locus-tag class description ALE3EI_0001 PF00308 Bacterial dnaA protein ALE3EI_0001 PF08299 Bacterial dnaA protein helix-turn-helix ALE3EI_0001 PF11638 DnaA N-terminal domain ALE3EI_0002 PF01451 Low molecular weight phosphotyrosine protein phosphatase ALE3EI_0004 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALE3EI_0007 PF02618 YceG-like family ALE3EI_0009 PF01678 Diaminopimelate epimerase ALE3EI_0010 PF17820 PDZ domain ALE3EI_0010 PF13180 PDZ domain ALE3EI_0011 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALE3EI_0011 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALE3EI_0012 PF00583 Acetyltransferase (GNAT) family ALE3EI_0014 PF01746 tRNA (Guanine-1)-methyltransferase ALE3EI_0016 PF01245 Ribosomal protein L19 ALE3EI_0017 PF03971 Monomeric isocitrate dehydrogenase ALE3EI_0018 PF13580 SIS domain ALE3EI_0021 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALE3EI_0021 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALE3EI_0021 PF02824 TGS domain ALE3EI_0021 PF03129 Anticodon binding domain ALE3EI_0022 PF05198 Translation initiation factor IF-3, N-terminal domain ALE3EI_0022 PF00707 Translation initiation factor IF-3, C-terminal domain ALE3EI_0023 PF01632 Ribosomal protein L35 ALE3EI_0024 PF00453 Ribosomal protein L20 ALE3EI_0033 PF01578 Cytochrome C assembly protein ALE3EI_0033 PF05140 ResB-like family ALE3EI_0034 PF00772 DnaB-like helicase N terminal domain ALE3EI_0034 PF03796 DnaB-like helicase C terminal domain ALE3EI_0035 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ALE3EI_0038 PF01702 Queuine tRNA-ribosyltransferase ALE3EI_0040 PF02779 Transketolase, pyrimidine binding domain ALE3EI_0040 PF02780 Transketolase, C-terminal domain ALE3EI_0042 PF01479 S4 domain ALE3EI_0043 PF00156 Phosphoribosyl transferase domain ALE3EI_0044 PF01202 Shikimate kinase ALE3EI_0046 PF01593 Flavin containing amine oxidoreductase ALE3EI_0050 PF08534 Redoxin ALE3EI_0052 PF00330 Aconitase family (aconitate hydratase) ALE3EI_0052 PF00694 Aconitase C-terminal domain ALE3EI_0053 PF01757 Acyltransferase family ALE3EI_0055 PF17863 AAA lid domain ALE3EI_0055 PF07726 ATPase family associated with various cellular activities (AAA) ALE3EI_0062 PF00478 IMP dehydrogenase / GMP reductase domain ALE3EI_0062 PF00571 CBS domain ALE3EI_0067 PF02872 5'-nucleotidase, C-terminal domain ALE3EI_0067 PF00149 Calcineurin-like phosphoesterase ALE3EI_0067 PF17936 Bacterial Ig domain ALE3EI_0068 PF00682 HMGL-like ALE3EI_0069 PF01810 LysE type translocator ALE3EI_0070 PF01180 Dihydroorotate dehydrogenase ALE3EI_0071 PF07687 Peptidase dimerisation domain ALE3EI_0071 PF01546 Peptidase family M20/M25/M40 ALE3EI_0072 PF02699 Preprotein translocase subunit ALE3EI_0074 PF01029 NusB family ALE3EI_0075 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALE3EI_0075 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALE3EI_0076 PF00005 ABC transporter ALE3EI_0076 PF00664 ABC transporter transmembrane region ALE3EI_0079 PF00916 Sulfate permease family ALE3EI_0079 PF01740 STAS domain ALE3EI_0083 PF03062 MBOAT, membrane-bound O-acyltransferase family ALE3EI_0085 PF04264 YceI-like domain ALE3EI_0086 PF01588 Putative tRNA binding domain ALE3EI_0089 PF12867 DinB superfamily ALE3EI_0090 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALE3EI_0091 PF00570 HRDC domain ALE3EI_0091 PF00270 DEAD/DEAH box helicase ALE3EI_0091 PF00271 Helicase conserved C-terminal domain ALE3EI_0091 PF16124 RecQ zinc-binding ALE3EI_0091 PF09382 RQC domain ALE3EI_0092 PF00571 CBS domain ALE3EI_0092 PF01380 SIS domain ALE3EI_0093 PF00902 Sec-independent protein translocase protein (TatC) ALE3EI_0095 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALE3EI_0095 PF00005 ABC transporter ALE3EI_0096 PF01066 CDP-alcohol phosphatidyltransferase ALE3EI_0099 PF02397 Bacterial sugar transferase ALE3EI_0100 PF00534 Glycosyl transferases group 1 ALE3EI_0104 PF00534 Glycosyl transferases group 1 ALE3EI_0104 PF13439 Glycosyltransferase Family 4 ALE3EI_0107 PF03062 MBOAT, membrane-bound O-acyltransferase family ALE3EI_0108 PF02348 Cytidylyltransferase ALE3EI_0109 PF02350 UDP-N-acetylglucosamine 2-epimerase ALE3EI_0110 PF03102 NeuB family ALE3EI_0110 PF08666 SAF domain ALE3EI_0111 PF00534 Glycosyl transferases group 1 ALE3EI_0111 PF13439 Glycosyltransferase Family 4 ALE3EI_0113 PF16363 GDP-mannose 4,6 dehydratase ALE3EI_0114 PF00535 Glycosyl transferase family 2 ALE3EI_0116 PF00535 Glycosyl transferase family 2 ALE3EI_0118 PF00483 Nucleotidyl transferase ALE3EI_0119 PF16363 GDP-mannose 4,6 dehydratase ALE3EI_0120 PF13439 Glycosyltransferase Family 4 ALE3EI_0120 PF00534 Glycosyl transferases group 1 ALE3EI_0122 PF00535 Glycosyl transferase family 2 ALE3EI_0127 PF00005 ABC transporter ALE3EI_0130 PF04480 Protein of unknown function (DUF559) ALE3EI_0131 PF01370 NAD dependent epimerase/dehydratase family ALE3EI_0132 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALE3EI_0132 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALE3EI_0132 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALE3EI_0133 PF02397 Bacterial sugar transferase ALE3EI_0134 PF13614 AAA domain ALE3EI_0134 PF13807 G-rich domain on putative tyrosine kinase ALE3EI_0134 PF02706 Chain length determinant protein ALE3EI_0136 PF00005 ABC transporter ALE3EI_0136 PF16326 ABC transporter C-terminal domain ALE3EI_0136 PF12848 ABC transporter ALE3EI_0138 PF02687 FtsX-like permease family ALE3EI_0138 PF00005 ABC transporter ALE3EI_0138 PF12704 MacB-like periplasmic core domain ALE3EI_0141 PF01923 Cobalamin adenosyltransferase ALE3EI_0143 PF07516 SecA Wing and Scaffold domain ALE3EI_0143 PF01043 SecA preprotein cross-linking domain ALE3EI_0143 PF07517 SecA DEAD-like domain ALE3EI_0150 PF08281 Sigma-70, region 4 ALE3EI_0150 PF04542 Sigma-70 region 2 ALE3EI_0154 PF04542 Sigma-70 region 2 ALE3EI_0154 PF08281 Sigma-70, region 4 ALE3EI_0156 PF02566 OsmC-like protein ALE3EI_0158 PF01370 NAD dependent epimerase/dehydratase family ALE3EI_0159 PF00535 Glycosyl transferase family 2 ALE3EI_0162 PF01569 PAP2 superfamily ALE3EI_0164 PF01554 MatE ALE3EI_0168 PF03976 Polyphosphate kinase 2 (PPK2) ALE3EI_0169 PF02954 Bacterial regulatory protein, Fis family ALE3EI_0169 PF00072 Response regulator receiver domain ALE3EI_0169 PF00158 Sigma-54 interaction domain ALE3EI_0171 PF12795 Mechanosensitive ion channel porin domain ALE3EI_0171 PF00924 Mechanosensitive ion channel ALE3EI_0171 PF12794 Mechanosensitive ion channel inner membrane domain 1 ALE3EI_0173 PF13732 Domain of unknown function (DUF4162) ALE3EI_0173 PF00005 ABC transporter ALE3EI_0174 PF00226 DnaJ domain ALE3EI_0174 PF01556 DnaJ C terminal domain ALE3EI_0174 PF00684 DnaJ central domain ALE3EI_0175 PF01025 GrpE ALE3EI_0177 PF08338 Domain of unknown function (DUF1731) ALE3EI_0177 PF01370 NAD dependent epimerase/dehydratase family ALE3EI_0178 PF01266 FAD dependent oxidoreductase ALE3EI_0178 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ALE3EI_0180 PF01063 Amino-transferase class IV ALE3EI_0184 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0184 PF07730 Histidine kinase ALE3EI_0184 PF13492 GAF domain ALE3EI_0185 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_0185 PF00072 Response regulator receiver domain ALE3EI_0189 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ALE3EI_0191 PF01965 DJ-1/PfpI family ALE3EI_0191 PF12833 Helix-turn-helix domain ALE3EI_0193 PF01037 Lrp/AsnC ligand binding domain ALE3EI_0195 PF02310 B12 binding domain ALE3EI_0195 PF01642 Methylmalonyl-CoA mutase ALE3EI_0200 PF01497 Periplasmic binding protein ALE3EI_0201 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ALE3EI_0202 PF03462 PCRF domain ALE3EI_0202 PF00472 RF-1 domain ALE3EI_0203 PF00586 AIR synthase related protein, N-terminal domain ALE3EI_0203 PF02769 AIR synthase related protein, C-terminal domain ALE3EI_0205 PF03783 Curli production assembly/transport component CsgG ALE3EI_0206 PF10614 Type VIII secretion system (T8SS), CsgF protein ALE3EI_0210 PF18318 Glutamine synthetase C-terminal domain ALE3EI_0210 PF00120 Glutamine synthetase, catalytic domain ALE3EI_0210 PF12437 Glutamine synthetase type III N terminal ALE3EI_0211 PF01699 Sodium/calcium exchanger protein ALE3EI_0214 PF00156 Phosphoribosyl transferase domain ALE3EI_0220 PF00121 Triosephosphate isomerase ALE3EI_0221 PF00528 Binding-protein-dependent transport system inner membrane component ALE3EI_0224 PF00809 Pterin binding enzyme ALE3EI_0225 PF02457 DisA bacterial checkpoint controller nucleotide-binding ALE3EI_0227 PF00664 ABC transporter transmembrane region ALE3EI_0227 PF00005 ABC transporter ALE3EI_0228 PF01416 tRNA pseudouridine synthase ALE3EI_0231 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALE3EI_0231 PF07497 Rho termination factor, RNA-binding domain ALE3EI_0236 PF00293 NUDIX domain ALE3EI_0237 PF00156 Phosphoribosyl transferase domain ALE3EI_0239 PF02237 Biotin protein ligase C terminal domain ALE3EI_0239 PF08279 HTH domain ALE3EI_0239 PF03099 Biotin/lipoate A/B protein ligase family ALE3EI_0241 PF17862 AAA+ lid domain ALE3EI_0241 PF01434 Peptidase family M41 ALE3EI_0241 PF00004 ATPase family associated with various cellular activities (AAA) ALE3EI_0244 PF02666 Phosphatidylserine decarboxylase ALE3EI_0247 PF10458 Valyl tRNA synthetase tRNA binding arm ALE3EI_0247 PF08264 Anticodon-binding domain of tRNA ALE3EI_0247 PF00133 tRNA synthetases class I (I, L, M and V) ALE3EI_0249 PF17820 PDZ domain ALE3EI_0249 PF02163 Peptidase family M50 ALE3EI_0250 PF00155 Aminotransferase class I and II ALE3EI_0251 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ALE3EI_0251 PF01565 FAD binding domain ALE3EI_0252 PF02469 Fasciclin domain ALE3EI_0254 PF00535 Glycosyl transferase family 2 ALE3EI_0257 PF04055 Radical SAM superfamily ALE3EI_0258 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALE3EI_0258 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALE3EI_0259 PF17149 Periplasmic sensor domain found in signal transduction proteins ALE3EI_0259 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0259 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_0259 PF01627 Hpt domain ALE3EI_0259 PF00072 Response regulator receiver domain ALE3EI_0259 PF00672 HAMP domain ALE3EI_0260 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ALE3EI_0261 PF01784 NIF3 (NGG1p interacting factor 3) ALE3EI_0263 PF01625 Peptide methionine sulfoxide reductase ALE3EI_0270 PF00266 Aminotransferase class-V ALE3EI_0271 PF01494 FAD binding domain ALE3EI_0272 PF01042 Endoribonuclease L-PSP ALE3EI_0273 PF00171 Aldehyde dehydrogenase family ALE3EI_0276 PF01596 O-methyltransferase ALE3EI_0277 PF01569 PAP2 superfamily ALE3EI_0278 PF02416 mttA/Hcf106 family ALE3EI_0283 PF03575 Peptidase family S51 ALE3EI_0284 PF02557 D-alanyl-D-alanine carboxypeptidase ALE3EI_0285 PF01435 Peptidase family M48 ALE3EI_0286 PF01676 Metalloenzyme superfamily ALE3EI_0286 PF06415 BPG-independent PGAM N-terminus (iPGM_N) ALE3EI_0288 PF00557 Metallopeptidase family M24 ALE3EI_0289 PF01209 ubiE/COQ5 methyltransferase family ALE3EI_0290 PF02424 ApbE family ALE3EI_0293 PF00970 Oxidoreductase FAD-binding domain ALE3EI_0293 PF00175 Oxidoreductase NAD-binding domain ALE3EI_0293 PF00111 2Fe-2S iron-sulfur cluster binding domain ALE3EI_0294 PF02508 Rnf-Nqr subunit, membrane protein ALE3EI_0295 PF02508 Rnf-Nqr subunit, membrane protein ALE3EI_0296 PF04205 FMN-binding domain ALE3EI_0297 PF03116 NQR2, RnfD, RnfE family ALE3EI_0298 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) ALE3EI_0298 PF11973 NQRA C-terminal domain ALE3EI_0301 PF04379 ApaG domain ALE3EI_0304 PF07495 Y_Y_Y domain ALE3EI_0304 PF00072 Response regulator receiver domain ALE3EI_0304 PF12833 Helix-turn-helix domain ALE3EI_0304 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_0304 PF07494 Two component regulator propeller ALE3EI_0304 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0306 PF00171 Aldehyde dehydrogenase family ALE3EI_0307 PF00293 NUDIX domain ALE3EI_0308 PF02527 rRNA small subunit methyltransferase G ALE3EI_0309 PF00487 Fatty acid desaturase ALE3EI_0312 PF00155 Aminotransferase class I and II ALE3EI_0314 PF02222 ATP-grasp domain ALE3EI_0315 PF02386 Cation transport protein ALE3EI_0316 PF02254 TrkA-N domain ALE3EI_0316 PF02080 TrkA-C domain ALE3EI_0317 PF01209 ubiE/COQ5 methyltransferase family ALE3EI_0321 PF01116 Fructose-bisphosphate aldolase class-II ALE3EI_0322 PF01039 Carboxyl transferase domain ALE3EI_0324 PF00312 Ribosomal protein S15 ALE3EI_0325 PF01138 3' exoribonuclease family, domain 1 ALE3EI_0325 PF00013 KH domain ALE3EI_0325 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ALE3EI_0325 PF03725 3' exoribonuclease family, domain 2 ALE3EI_0325 PF00575 S1 RNA binding domain ALE3EI_0330 PF03979 Sigma-70 factor, region 1.1 ALE3EI_0330 PF00140 Sigma-70 factor, region 1.2 ALE3EI_0330 PF04542 Sigma-70 region 2 ALE3EI_0330 PF04539 Sigma-70 region 3 ALE3EI_0330 PF04545 Sigma-70, region 4 ALE3EI_0332 PF00834 Ribulose-phosphate 3 epimerase family ALE3EI_0341 PF09424 Yqey-like protein ALE3EI_0342 PF12327 FtsZ family, C-terminal domain ALE3EI_0342 PF00091 Tubulin/FtsZ family, GTPase domain ALE3EI_0343 PF02491 SHS2 domain inserted in FTSA ALE3EI_0345 PF08245 Mur ligase middle domain ALE3EI_0345 PF01225 Mur ligase family, catalytic domain ALE3EI_0345 PF02875 Mur ligase family, glutamate ligase domain ALE3EI_0346 PF04101 Glycosyltransferase family 28 C-terminal domain ALE3EI_0346 PF03033 Glycosyltransferase family 28 N-terminal domain ALE3EI_0347 PF01098 Cell cycle protein ALE3EI_0348 PF02875 Mur ligase family, glutamate ligase domain ALE3EI_0348 PF08245 Mur ligase middle domain ALE3EI_0349 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ALE3EI_0349 PF00953 Glycosyl transferase family 4 ALE3EI_0350 PF01225 Mur ligase family, catalytic domain ALE3EI_0350 PF02875 Mur ligase family, glutamate ligase domain ALE3EI_0350 PF08245 Mur ligase middle domain ALE3EI_0351 PF00905 Penicillin binding protein transpeptidase domain ALE3EI_0351 PF03717 Penicillin-binding Protein dimerisation domain ALE3EI_0351 PF03793 PASTA domain ALE3EI_0353 PF01795 MraW methylase family ALE3EI_0354 PF02381 MraZ protein, putative antitoxin-like ALE3EI_0356 PF01926 50S ribosome-binding GTPase ALE3EI_0359 PF02540 NAD synthase ALE3EI_0360 PF00072 Response regulator receiver domain ALE3EI_0360 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_0361 PF01807 CHC2 zinc finger ALE3EI_0361 PF08275 DNA primase catalytic core, N-terminal domain ALE3EI_0361 PF10410 DnaB-helicase binding domain of primase ALE3EI_0366 PF00348 Polyprenyl synthetase ALE3EI_0371 PF04055 Radical SAM superfamily ALE3EI_0372 PF01483 Proprotein convertase P-domain ALE3EI_0373 PF02547 Queuosine biosynthesis protein ALE3EI_0374 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALE3EI_0379 PF02580 D-Tyr-tRNA(Tyr) deacylase ALE3EI_0380 PF16745 RsgA N-terminal domain ALE3EI_0380 PF03193 RsgA GTPase ALE3EI_0381 PF00793 DAHP synthetase I family ALE3EI_0381 PF18152 DAHP synthase ferredoxin-like domain ALE3EI_0382 PF00005 ABC transporter ALE3EI_0387 PF00291 Pyridoxal-phosphate dependent enzyme ALE3EI_0388 PF02082 Transcriptional regulator ALE3EI_0389 PF02219 Methylenetetrahydrofolate reductase ALE3EI_0390 PF00809 Pterin binding enzyme ALE3EI_0390 PF02310 B12 binding domain ALE3EI_0390 PF02607 B12 binding domain ALE3EI_0390 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALE3EI_0390 PF02574 Homocysteine S-methyltransferase ALE3EI_0391 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALE3EI_0391 PF02574 Homocysteine S-methyltransferase ALE3EI_0391 PF02310 B12 binding domain ALE3EI_0391 PF00809 Pterin binding enzyme ALE3EI_0391 PF02607 B12 binding domain ALE3EI_0392 PF02566 OsmC-like protein ALE3EI_0393 PF13840 ACT domain ALE3EI_0393 PF00742 Homoserine dehydrogenase ALE3EI_0393 PF03447 Homoserine dehydrogenase, NAD binding domain ALE3EI_0393 PF01842 ACT domain ALE3EI_0393 PF00696 Amino acid kinase family ALE3EI_0394 PF01053 Cys/Met metabolism PLP-dependent enzyme ALE3EI_0396 PF02772 S-adenosylmethionine synthetase, central domain ALE3EI_0396 PF00438 S-adenosylmethionine synthetase, N-terminal domain ALE3EI_0396 PF02773 S-adenosylmethionine synthetase, C-terminal domain ALE3EI_0398 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_0398 PF00072 Response regulator receiver domain ALE3EI_0408 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALE3EI_0408 PF02272 DHHA1 domain ALE3EI_0408 PF01411 tRNA synthetases class II (A) ALE3EI_0409 PF01551 Peptidase family M23 ALE3EI_0409 PF08460 Bacterial SH3 domain ALE3EI_0415 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ALE3EI_0415 PF01926 50S ribosome-binding GTPase ALE3EI_0416 PF07650 KH domain ALE3EI_0416 PF01926 50S ribosome-binding GTPase ALE3EI_0420 PF00999 Sodium/hydrogen exchanger family ALE3EI_0424 PF00753 Metallo-beta-lactamase superfamily ALE3EI_0425 PF01925 Sulfite exporter TauE/SafE ALE3EI_0428 PF01738 Dienelactone hydrolase family ALE3EI_0429 PF00486 Transcriptional regulatory protein, C terminal ALE3EI_0429 PF00072 Response regulator receiver domain ALE3EI_0430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0430 PF16736 Single Cache-like ALE3EI_0430 PF00989 PAS fold ALE3EI_0430 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_0434 PF00672 HAMP domain ALE3EI_0434 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0434 PF07730 Histidine kinase ALE3EI_0443 PF12161 HsdM N-terminal domain ALE3EI_0443 PF02384 N-6 DNA Methylase ALE3EI_0447 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ALE3EI_0447 PF12008 Type I restriction and modification enzyme - subunit R C terminal ALE3EI_0447 PF18766 SWI2/SNF2 ATPase ALE3EI_0448 PF07728 AAA domain (dynein-related subfamily) ALE3EI_0448 PF12102 Domain of unknown function (DUF3578) ALE3EI_0454 PF00239 Resolvase, N terminal domain ALE3EI_0454 PF02796 Helix-turn-helix domain of resolvase ALE3EI_0458 PF11867 Domain of unknown function (DUF3387) ALE3EI_0458 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ALE3EI_0458 PF18766 SWI2/SNF2 ATPase ALE3EI_0462 PF12161 HsdM N-terminal domain ALE3EI_0462 PF02384 N-6 DNA Methylase ALE3EI_0470 PF00873 AcrB/AcrD/AcrF family ALE3EI_0472 PF12848 ABC transporter ALE3EI_0472 PF00005 ABC transporter ALE3EI_0472 PF16326 ABC transporter C-terminal domain ALE3EI_0474 PF01266 FAD dependent oxidoreductase ALE3EI_0474 PF05430 S-adenosyl-L-methionine-dependent methyltransferase ALE3EI_0478 PF03781 Sulfatase-modifying factor enzyme 1 ALE3EI_0480 PF01131 DNA topoisomerase ALE3EI_0480 PF13368 Topoisomerase C-terminal repeat ALE3EI_0480 PF01751 Toprim domain ALE3EI_0481 PF00719 Inorganic pyrophosphatase ALE3EI_0483 PF00919 Uncharacterized protein family UPF0004 ALE3EI_0483 PF01938 TRAM domain ALE3EI_0483 PF04055 Radical SAM superfamily ALE3EI_0484 PF00158 Sigma-54 interaction domain ALE3EI_0488 PF00166 Chaperonin 10 Kd subunit ALE3EI_0489 PF00118 TCP-1/cpn60 chaperonin family ALE3EI_0494 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALE3EI_0494 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALE3EI_0494 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALE3EI_0494 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALE3EI_0502 PF00005 ABC transporter ALE3EI_0502 PF02687 FtsX-like permease family ALE3EI_0502 PF12704 MacB-like periplasmic core domain ALE3EI_0503 PF02142 MGS-like domain ALE3EI_0503 PF01808 AICARFT/IMPCHase bienzyme ALE3EI_0507 PF03717 Penicillin-binding Protein dimerisation domain ALE3EI_0507 PF00905 Penicillin binding protein transpeptidase domain ALE3EI_0508 PF01098 Cell cycle protein ALE3EI_0510 PF12911 N-terminal TM domain of oligopeptide transport permease C ALE3EI_0510 PF00528 Binding-protein-dependent transport system inner membrane component ALE3EI_0511 PF17804 Tail specific protease N-terminal domain ALE3EI_0511 PF03572 Peptidase family S41 ALE3EI_0511 PF00595 PDZ domain ALE3EI_0511 PF11818 C-terminal domain of tail specific protease (DUF3340) ALE3EI_0513 PF01975 Survival protein SurE ALE3EI_0515 PF02684 Lipid-A-disaccharide synthetase ALE3EI_0516 PF00877 NlpC/P60 family ALE3EI_0517 PF00753 Metallo-beta-lactamase superfamily ALE3EI_0517 PF13567 Domain of unknown function (DUF4131) ALE3EI_0517 PF03772 Competence protein ALE3EI_0518 PF00085 Thioredoxin ALE3EI_0519 PF00854 POT family ALE3EI_0520 PF00854 POT family ALE3EI_0521 PF00326 Prolyl oligopeptidase family ALE3EI_0521 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ALE3EI_0522 PF00368 Hydroxymethylglutaryl-coenzyme A reductase ALE3EI_0525 PF03471 Transporter associated domain ALE3EI_0525 PF00571 CBS domain ALE3EI_0530 PF03309 Type III pantothenate kinase ALE3EI_0533 PF03301 Tryptophan 2,3-dioxygenase ALE3EI_0535 PF02627 Carboxymuconolactone decarboxylase family ALE3EI_0537 PF12368 Rhodanase C-terminal ALE3EI_0537 PF00581 Rhodanese-like domain ALE3EI_0537 PF17773 UPF0176 acylphosphatase like domain ALE3EI_0539 PF01048 Phosphorylase superfamily ALE3EI_0540 PF01209 ubiE/COQ5 methyltransferase family ALE3EI_0541 PF01384 Phosphate transporter family ALE3EI_0548 PF18113 Rubredoxin binding C-terminal domain ALE3EI_0548 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALE3EI_0551 PF00535 Glycosyl transferase family 2 ALE3EI_0551 PF07238 PilZ domain ALE3EI_0553 PF04389 Peptidase family M28 ALE3EI_0557 PF00583 Acetyltransferase (GNAT) family ALE3EI_0557 PF00795 Carbon-nitrogen hydrolase ALE3EI_0558 PF01916 Deoxyhypusine synthase ALE3EI_0559 PF00491 Arginase family ALE3EI_0560 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALE3EI_0560 PF17810 Arginine decarboxylase helical bundle domain ALE3EI_0560 PF17944 Arginine decarboxylase C-terminal helical extension ALE3EI_0562 PF01479 S4 domain ALE3EI_0562 PF00849 RNA pseudouridylate synthase ALE3EI_0576 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase ALE3EI_0577 PF00535 Glycosyl transferase family 2 ALE3EI_0580 PF08274 PhnA Zinc-Ribbon ALE3EI_0580 PF03831 PhnA domain ALE3EI_0590 PF04237 YjbR ALE3EI_0594 PF04055 Radical SAM superfamily ALE3EI_0594 PF06969 HemN C-terminal domain ALE3EI_0595 PF02075 Crossover junction endodeoxyribonuclease RuvC ALE3EI_0597 PF00535 Glycosyl transferase family 2 ALE3EI_0597 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 ALE3EI_0611 PF04011 LemA family ALE3EI_0615 PF00574 Clp protease ALE3EI_0616 PF00085 Thioredoxin ALE3EI_0617 PF02678 Pirin ALE3EI_0617 PF05726 Pirin C-terminal cupin domain ALE3EI_0620 PF01336 OB-fold nucleic acid binding domain ALE3EI_0620 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALE3EI_0620 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALE3EI_0620 PF02811 PHP domain ALE3EI_0620 PF14579 Helix-hairpin-helix motif ALE3EI_0623 PF00886 Ribosomal protein S16 ALE3EI_0624 PF01782 RimM N-terminal domain ALE3EI_0624 PF05239 PRC-barrel domain ALE3EI_0625 PF05175 Methyltransferase small domain ALE3EI_0626 PF13520 Amino acid permease ALE3EI_0628 PF02770 Acyl-CoA dehydrogenase, middle domain ALE3EI_0628 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALE3EI_0628 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALE3EI_0630 PF00111 2Fe-2S iron-sulfur cluster binding domain ALE3EI_0631 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALE3EI_0632 PF01521 Iron-sulphur cluster biosynthesis ALE3EI_0632 PF01106 NifU-like domain ALE3EI_0633 PF01883 Iron-sulfur cluster assembly protein ALE3EI_0633 PF10609 NUBPL iron-transfer P-loop NTPase ALE3EI_0634 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALE3EI_0636 PF02390 Putative methyltransferase ALE3EI_0637 PF04101 Glycosyltransferase family 28 C-terminal domain ALE3EI_0637 PF03033 Glycosyltransferase family 28 N-terminal domain ALE3EI_0638 PF16736 Single Cache-like ALE3EI_0638 PF00989 PAS fold ALE3EI_0638 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_0638 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0639 PF00486 Transcriptional regulatory protein, C terminal ALE3EI_0639 PF00072 Response regulator receiver domain ALE3EI_0644 PF00579 tRNA synthetases class I (W and Y) ALE3EI_0645 PF16363 GDP-mannose 4,6 dehydratase ALE3EI_0647 PF01979 Amidohydrolase family ALE3EI_0648 PF00535 Glycosyl transferase family 2 ALE3EI_0651 PF01293 Phosphoenolpyruvate carboxykinase ALE3EI_0652 PF04241 Protein of unknown function (DUF423) ALE3EI_0654 PF04298 Putative neutral zinc metallopeptidase ALE3EI_0655 PF08264 Anticodon-binding domain of tRNA ALE3EI_0655 PF13603 Leucyl-tRNA synthetase, Domain 2 ALE3EI_0655 PF09334 tRNA synthetases class I (M) ALE3EI_0656 PF18075 FtsX extracellular domain ALE3EI_0659 PF02673 Bacitracin resistance protein BacA ALE3EI_0660 PF01509 TruB family pseudouridylate synthase (N terminal domain) ALE3EI_0662 PF13673 Acetyltransferase (GNAT) domain ALE3EI_0662 PF00958 GMP synthase C terminal domain ALE3EI_0662 PF03352 Methyladenine glycosylase ALE3EI_0662 PF00117 Glutamine amidotransferase class-I ALE3EI_0662 PF13302 Acetyltransferase (GNAT) domain ALE3EI_0664 PF04371 Porphyromonas-type peptidyl-arginine deiminase ALE3EI_0665 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ALE3EI_0667 PF01613 Flavin reductase like domain ALE3EI_0668 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_0668 PF00989 PAS fold ALE3EI_0668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0670 PF01230 HIT domain ALE3EI_0671 PF01272 Transcription elongation factor, GreA/GreB, C-term ALE3EI_0671 PF03449 Transcription elongation factor, N-terminal ALE3EI_0674 PF00472 RF-1 domain ALE3EI_0674 PF03462 PCRF domain ALE3EI_0677 PF04973 Nicotinamide mononucleotide transporter ALE3EI_0679 PF01884 PcrB family ALE3EI_0681 PF05221 S-adenosyl-L-homocysteine hydrolase ALE3EI_0681 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ALE3EI_0683 PF01016 Ribosomal L27 protein ALE3EI_0684 PF00829 Ribosomal prokaryotic L21 protein ALE3EI_0688 PF00571 CBS domain ALE3EI_0688 PF03471 Transporter associated domain ALE3EI_0689 PF00436 Single-strand binding protein family ALE3EI_0690 PF14815 NUDIX domain ALE3EI_0690 PF00730 HhH-GPD superfamily base excision DNA repair protein ALE3EI_0691 PF00216 Bacterial DNA-binding protein ALE3EI_0692 PF10150 Ribonuclease E/G family ALE3EI_0692 PF00575 S1 RNA binding domain ALE3EI_0696 PF06968 Biotin and Thiamin Synthesis associated domain ALE3EI_0696 PF04055 Radical SAM superfamily ALE3EI_0697 PF00109 Beta-ketoacyl synthase, N-terminal domain ALE3EI_0697 PF02801 Beta-ketoacyl synthase, C-terminal domain ALE3EI_0699 PF00202 Aminotransferase class-III ALE3EI_0701 PF00155 Aminotransferase class I and II ALE3EI_0702 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ALE3EI_0703 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALE3EI_0703 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALE3EI_0704 PF01063 Amino-transferase class IV ALE3EI_0706 PF01380 SIS domain ALE3EI_0708 PF08323 Starch synthase catalytic domain ALE3EI_0708 PF00534 Glycosyl transferases group 1 ALE3EI_0709 PF02569 Pantoate-beta-alanine ligase ALE3EI_0710 PF02261 Aspartate decarboxylase ALE3EI_0719 PF00072 Response regulator receiver domain ALE3EI_0719 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_0720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0720 PF07730 Histidine kinase ALE3EI_0722 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_0722 PF00072 Response regulator receiver domain ALE3EI_0723 PF00072 Response regulator receiver domain ALE3EI_0723 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_0724 PF07730 Histidine kinase ALE3EI_0724 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0724 PF05384 Sensor protein DegS ALE3EI_0725 PF18073 Rubredoxin metal binding domain ALE3EI_0727 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALE3EI_0727 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALE3EI_0727 PF02770 Acyl-CoA dehydrogenase, middle domain ALE3EI_0728 PF00248 Aldo/keto reductase family ALE3EI_0729 PF00691 OmpA family ALE3EI_0729 PF13488 Glycine zipper ALE3EI_0730 PF03372 Endonuclease/Exonuclease/phosphatase family ALE3EI_0736 PF03129 Anticodon binding domain ALE3EI_0738 PF00156 Phosphoribosyl transferase domain ALE3EI_0740 PF00795 Carbon-nitrogen hydrolase ALE3EI_0742 PF00141 Peroxidase ALE3EI_0743 PF00155 Aminotransferase class I and II ALE3EI_0744 PF00989 PAS fold ALE3EI_0744 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_0744 PF18415 Histidine kinase receptor ArcB trans-membrane domain ALE3EI_0744 PF00072 Response regulator receiver domain ALE3EI_0744 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0744 PF01627 Hpt domain ALE3EI_0745 PF13085 2Fe-2S iron-sulfur cluster binding domain ALE3EI_0746 PF02910 Fumarate reductase flavoprotein C-term ALE3EI_0746 PF00890 FAD binding domain ALE3EI_0749 PF05195 Aminopeptidase P, N-terminal domain ALE3EI_0749 PF00557 Metallopeptidase family M24 ALE3EI_0750 PF05525 Branched-chain amino acid transport protein ALE3EI_0751 PF00561 alpha/beta hydrolase fold ALE3EI_0754 PF00586 AIR synthase related protein, N-terminal domain ALE3EI_0754 PF02769 AIR synthase related protein, C-terminal domain ALE3EI_0760 PF03150 Di-haem cytochrome c peroxidase ALE3EI_0761 PF01521 Iron-sulphur cluster biosynthesis ALE3EI_0762 PF01458 Uncharacterized protein family (UPF0051) ALE3EI_0764 PF00005 ABC transporter ALE3EI_0765 PF01458 Uncharacterized protein family (UPF0051) ALE3EI_0766 PF00266 Aminotransferase class-V ALE3EI_0768 PF02657 Fe-S metabolism associated domain ALE3EI_0769 PF01883 Iron-sulfur cluster assembly protein ALE3EI_0773 PF16360 GTP-binding GTPase Middle Region ALE3EI_0773 PF13167 GTP-binding GTPase N-terminal ALE3EI_0773 PF01926 50S ribosome-binding GTPase ALE3EI_0778 PF00691 OmpA family ALE3EI_0778 PF01389 OmpA-like transmembrane domain ALE3EI_0782 PF00072 Response regulator receiver domain ALE3EI_0782 PF01339 CheB methylesterase ALE3EI_0783 PF01590 GAF domain ALE3EI_0783 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0783 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_0783 PF08446 PAS fold ALE3EI_0783 PF00360 Phytochrome region ALE3EI_0786 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_0786 PF00593 TonB dependent receptor ALE3EI_0788 PF03301 Tryptophan 2,3-dioxygenase ALE3EI_0790 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALE3EI_0791 PF04209 homogentisate 1,2-dioxygenase ALE3EI_0792 PF01734 Patatin-like phospholipase ALE3EI_0793 PF01541 GIY-YIG catalytic domain ALE3EI_0793 PF08459 UvrC Helix-hairpin-helix N-terminal ALE3EI_0793 PF02151 UvrB/uvrC motif ALE3EI_0794 PF08443 RimK-like ATP-grasp domain ALE3EI_0794 PF18030 RimK PreATP-grasp domain ALE3EI_0796 PF08443 RimK-like ATP-grasp domain ALE3EI_0796 PF18030 RimK PreATP-grasp domain ALE3EI_0798 PF01812 5-formyltetrahydrofolate cyclo-ligase family ALE3EI_0800 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_0800 PF00072 Response regulator receiver domain ALE3EI_0800 PF09308 LuxQ, periplasmic ALE3EI_0800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0801 PF01252 Signal peptidase (SPase) II ALE3EI_0804 PF00133 tRNA synthetases class I (I, L, M and V) ALE3EI_0804 PF08264 Anticodon-binding domain of tRNA ALE3EI_0809 PF01370 NAD dependent epimerase/dehydratase family ALE3EI_0810 PF05649 Peptidase family M13 ALE3EI_0810 PF01431 Peptidase family M13 ALE3EI_0812 PF01370 NAD dependent epimerase/dehydratase family ALE3EI_0814 PF13180 PDZ domain ALE3EI_0814 PF02163 Peptidase family M50 ALE3EI_0815 PF02630 SCO1/SenC ALE3EI_0817 PF07670 Nucleoside recognition ALE3EI_0817 PF07664 Ferrous iron transport protein B C terminus ALE3EI_0817 PF02421 Ferrous iron transport protein B ALE3EI_0820 PF00950 ABC 3 transport family ALE3EI_0821 PF00950 ABC 3 transport family ALE3EI_0822 PF00005 ABC transporter ALE3EI_0823 PF01297 Zinc-uptake complex component A periplasmic ALE3EI_0825 PF00950 ABC 3 transport family ALE3EI_0825 PF02742 Iron dependent repressor, metal binding and dimerisation domain ALE3EI_0826 PF00684 DnaJ central domain ALE3EI_0826 PF00226 DnaJ domain ALE3EI_0826 PF01556 DnaJ C terminal domain ALE3EI_0827 PF06491 Disulphide isomerase ALE3EI_0830 PF04055 Radical SAM superfamily ALE3EI_0830 PF13186 Iron-sulfur cluster-binding domain ALE3EI_0830 PF05402 Coenzyme PQQ synthesis protein D (PqqD) ALE3EI_0831 PF00378 Enoyl-CoA hydratase/isomerase ALE3EI_0832 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_0832 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_0832 PF00672 HAMP domain ALE3EI_0833 PF03653 Uncharacterised protein family (UPF0093) ALE3EI_0836 PF00762 Ferrochelatase ALE3EI_0838 PF01488 Shikimate / quinate 5-dehydrogenase ALE3EI_0838 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ALE3EI_0838 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ALE3EI_0839 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ALE3EI_0839 PF03900 Porphobilinogen deaminase, C-terminal domain ALE3EI_0841 PF01208 Uroporphyrinogen decarboxylase (URO-D) ALE3EI_0844 PF01218 Coproporphyrinogen III oxidase ALE3EI_0845 PF00490 Delta-aminolevulinic acid dehydratase ALE3EI_0847 PF01595 Cyclin M transmembrane N-terminal domain ALE3EI_0847 PF00571 CBS domain ALE3EI_0850 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALE3EI_0850 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALE3EI_0854 PF00041 Fibronectin type III domain ALE3EI_0854 PF00704 Glycosyl hydrolases family 18 ALE3EI_0855 PF00005 ABC transporter ALE3EI_0855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region ALE3EI_0856 PF01144 Coenzyme A transferase ALE3EI_0857 PF01144 Coenzyme A transferase ALE3EI_0858 PF00912 Transglycosylase ALE3EI_0858 PF00905 Penicillin binding protein transpeptidase domain ALE3EI_0859 PF14109 GldH lipoprotein ALE3EI_0860 PF04468 PSP1 C-terminal conserved region ALE3EI_0861 PF12368 Rhodanase C-terminal ALE3EI_0861 PF17773 UPF0176 acylphosphatase like domain ALE3EI_0861 PF00581 Rhodanese-like domain ALE3EI_0862 PF00154 recA bacterial DNA recombination protein ALE3EI_0866 PF00579 tRNA synthetases class I (W and Y) ALE3EI_0867 PF02481 DNA recombination-mediator protein A ALE3EI_0867 PF17782 DprA winged helix domain ALE3EI_0874 PF00483 Nucleotidyl transferase ALE3EI_0876 PF00692 dUTPase ALE3EI_0879 PF00231 ATP synthase ALE3EI_0880 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALE3EI_0880 PF00306 ATP synthase alpha/beta chain, C terminal domain ALE3EI_0880 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALE3EI_0881 PF00213 ATP synthase delta (OSCP) subunit ALE3EI_0882 PF00430 ATP synthase B/B' CF(0) ALE3EI_0883 PF00137 ATP synthase subunit C ALE3EI_0884 PF00119 ATP synthase A chain ALE3EI_0889 PF00175 Oxidoreductase NAD-binding domain ALE3EI_0889 PF00042 Globin ALE3EI_0889 PF00970 Oxidoreductase FAD-binding domain ALE3EI_0894 PF02843 Phosphoribosylglycinamide synthetase, C domain ALE3EI_0894 PF02844 Phosphoribosylglycinamide synthetase, N domain ALE3EI_0894 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ALE3EI_0895 PF14535 AMP-binding enzyme C-terminal domain ALE3EI_0895 PF00501 AMP-binding enzyme ALE3EI_0896 PF00535 Glycosyl transferase family 2 ALE3EI_0897 PF02397 Bacterial sugar transferase ALE3EI_0898 PF16363 GDP-mannose 4,6 dehydratase ALE3EI_0899 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALE3EI_0899 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALE3EI_0899 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALE3EI_0900 PF13439 Glycosyltransferase Family 4 ALE3EI_0900 PF00534 Glycosyl transferases group 1 ALE3EI_0907 PF04321 RmlD substrate binding domain ALE3EI_0908 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ALE3EI_0909 PF00483 Nucleotidyl transferase ALE3EI_0910 PF16363 GDP-mannose 4,6 dehydratase ALE3EI_0913 PF01551 Peptidase family M23 ALE3EI_0914 PF02416 mttA/Hcf106 family ALE3EI_0916 PF01476 LysM domain ALE3EI_0916 PF06725 3D domain ALE3EI_0917 PF00162 Phosphoglycerate kinase ALE3EI_0920 PF01134 Glucose inhibited division protein A ALE3EI_0920 PF13932 GidA associated domain ALE3EI_0921 PF02130 Uncharacterized protein family UPF0054 ALE3EI_0923 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALE3EI_0925 PF01145 SPFH domain / Band 7 family ALE3EI_0929 PF00884 Sulfatase ALE3EI_0929 PF08019 Phosphoethanolamine transferase EptA/EptB ALE3EI_0931 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ALE3EI_0931 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALE3EI_0932 PF02152 Dihydroneopterin aldolase ALE3EI_0934 PF00773 RNB domain ALE3EI_0934 PF17876 Cold shock domain ALE3EI_0934 PF00575 S1 RNA binding domain ALE3EI_0934 PF08206 Ribonuclease B OB domain ALE3EI_0936 PF02502 Ribose/Galactose Isomerase ALE3EI_0937 PF01545 Cation efflux family ALE3EI_0938 PF13673 Acetyltransferase (GNAT) domain ALE3EI_0940 PF04116 Fatty acid hydroxylase superfamily ALE3EI_0941 PF13180 PDZ domain ALE3EI_0941 PF03572 Peptidase family S41 ALE3EI_0942 PF00825 Ribonuclease P ALE3EI_0944 PF00082 Subtilase family ALE3EI_0945 PF00753 Metallo-beta-lactamase superfamily ALE3EI_0946 PF03471 Transporter associated domain ALE3EI_0946 PF00999 Sodium/hydrogen exchanger family ALE3EI_0948 PF06421 GTP-binding protein LepA C-terminus ALE3EI_0948 PF03144 Elongation factor Tu domain 2 ALE3EI_0948 PF00009 Elongation factor Tu GTP binding domain ALE3EI_0948 PF00679 Elongation factor G C-terminus ALE3EI_0950 PF01207 Dihydrouridine synthase (Dus) ALE3EI_0951 PF12704 MacB-like periplasmic core domain ALE3EI_0951 PF02687 FtsX-like permease family ALE3EI_0952 PF02033 Ribosome-binding factor A ALE3EI_0954 PF00677 Lumazine binding domain ALE3EI_0955 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ALE3EI_0957 PF01783 Ribosomal L32p protein family ALE3EI_0958 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALE3EI_0958 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALE3EI_0959 PF00364 Biotin-requiring enzyme ALE3EI_0960 PF00289 Biotin carboxylase, N-terminal domain ALE3EI_0960 PF02785 Biotin carboxylase C-terminal domain ALE3EI_0960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALE3EI_0962 PF00912 Transglycosylase ALE3EI_0965 PF00005 ABC transporter ALE3EI_0965 PF08402 TOBE domain ALE3EI_0966 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ALE3EI_0966 PF00326 Prolyl oligopeptidase family ALE3EI_0970 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALE3EI_0970 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALE3EI_0971 PF01741 Large-conductance mechanosensitive channel, MscL ALE3EI_0972 PF01168 Alanine racemase, N-terminal domain ALE3EI_0972 PF00842 Alanine racemase, C-terminal domain ALE3EI_0973 PF00265 Thymidine kinase ALE3EI_0975 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALE3EI_0976 PF03167 Uracil DNA glycosylase superfamily ALE3EI_0978 PF01368 DHH family ALE3EI_0978 PF02272 DHHA1 domain ALE3EI_0978 PF17768 RecJ OB domain ALE3EI_0978 PF10141 Single-strand DNA-specific exonuclease, C terminal domain ALE3EI_0979 PF00149 Calcineurin-like phosphoesterase ALE3EI_0980 PF01242 6-pyruvoyl tetrahydropterin synthase ALE3EI_0987 PF12705 PD-(D/E)XK nuclease superfamily ALE3EI_0988 PF00691 OmpA family ALE3EI_0988 PF00223 Photosystem I psaA/psaB protein ALE3EI_0989 PF00155 Aminotransferase class I and II ALE3EI_0990 PF13361 UvrD-like helicase C-terminal domain ALE3EI_0990 PF00580 UvrD/REP helicase N-terminal domain ALE3EI_0990 PF12705 PD-(D/E)XK nuclease superfamily ALE3EI_0991 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ALE3EI_0991 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ALE3EI_0997 PF00156 Phosphoribosyl transferase domain ALE3EI_0999 PF01693 Caulimovirus viroplasmin ALE3EI_1000 PF00551 Formyl transferase ALE3EI_1001 PF00550 Phosphopantetheine attachment site ALE3EI_1002 PF02801 Beta-ketoacyl synthase, C-terminal domain ALE3EI_1002 PF00109 Beta-ketoacyl synthase, N-terminal domain ALE3EI_1003 PF00035 Double-stranded RNA binding motif ALE3EI_1003 PF14622 Ribonuclease-III-like ALE3EI_1005 PF00224 Pyruvate kinase, barrel domain ALE3EI_1005 PF02887 Pyruvate kinase, alpha/beta domain ALE3EI_1005 PF00391 PEP-utilising enzyme, mobile domain ALE3EI_1007 PF00817 impB/mucB/samB family ALE3EI_1007 PF11799 impB/mucB/samB family C-terminal domain ALE3EI_1008 PF01928 CYTH domain ALE3EI_1010 PF03932 CutC family ALE3EI_1011 PF00728 Glycosyl hydrolase family 20, catalytic domain ALE3EI_1011 PF02838 Glycosyl hydrolase family 20, domain 2 ALE3EI_1011 PF07691 PA14 domain ALE3EI_1012 PF16355 Domain of unknown function (DUF4982) ALE3EI_1012 PF02837 Glycosyl hydrolases family 2, sugar binding domain ALE3EI_1012 PF02836 Glycosyl hydrolases family 2, TIM barrel domain ALE3EI_1012 PF00703 Glycosyl hydrolases family 2 ALE3EI_1012 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 ALE3EI_1013 PF06832 Penicillin-Binding Protein C-terminus Family ALE3EI_1013 PF00912 Transglycosylase ALE3EI_1013 PF00905 Penicillin binding protein transpeptidase domain ALE3EI_1014 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain ALE3EI_1014 PF01835 MG2 domain ALE3EI_1014 PF17962 Bacterial macroglobulin domain 6 ALE3EI_1014 PF11974 Bacterial alpha-2-macroglobulin MG3 domain ALE3EI_1014 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain ALE3EI_1014 PF00207 Alpha-2-macroglobulin family ALE3EI_1015 PF03992 Antibiotic biosynthesis monooxygenase ALE3EI_1016 PF01112 Asparaginase ALE3EI_1018 PF06052 3-hydroxyanthranilic acid dioxygenase ALE3EI_1019 PF00171 Aldehyde dehydrogenase family ALE3EI_1021 PF00149 Calcineurin-like phosphoesterase ALE3EI_1023 PF13421 SPFH domain-Band 7 family ALE3EI_1026 PF00106 short chain dehydrogenase ALE3EI_1029 PF07726 ATPase family associated with various cellular activities (AAA) ALE3EI_1029 PF17863 AAA lid domain ALE3EI_1030 PF01882 Protein of unknown function DUF58 ALE3EI_1032 PF13519 von Willebrand factor type A domain ALE3EI_1033 PF07584 Aerotolerance regulator N-terminal ALE3EI_1033 PF13519 von Willebrand factor type A domain ALE3EI_1039 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ALE3EI_1039 PF01409 tRNA synthetases class II core domain (F) ALE3EI_1041 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ALE3EI_1041 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ALE3EI_1043 PF01467 Cytidylyltransferase-like ALE3EI_1044 PF00625 Guanylate kinase ALE3EI_1045 PF03755 YicC-like family, N-terminal region ALE3EI_1045 PF08340 Domain of unknown function (DUF1732) ALE3EI_1052 PF01053 Cys/Met metabolism PLP-dependent enzyme ALE3EI_1053 PF07694 5TMR of 5TMR-LYT ALE3EI_1053 PF06580 Histidine kinase ALE3EI_1054 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_1054 PF00072 Response regulator receiver domain ALE3EI_1057 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALE3EI_1057 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALE3EI_1059 PF11967 Recombination protein O N terminal ALE3EI_1059 PF02565 Recombination protein O C terminal ALE3EI_1060 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_1060 PF00593 TonB dependent receptor ALE3EI_1061 PF16177 Acetyl-coenzyme A synthetase N-terminus ALE3EI_1061 PF13193 AMP-binding enzyme C-terminal domain ALE3EI_1061 PF00501 AMP-binding enzyme ALE3EI_1067 PF07237 Protein of unknown function (DUF1428) ALE3EI_1069 PF01381 Helix-turn-helix ALE3EI_1071 PF00436 Single-strand binding protein family ALE3EI_1072 PF08264 Anticodon-binding domain of tRNA ALE3EI_1072 PF01588 Putative tRNA binding domain ALE3EI_1072 PF09334 tRNA synthetases class I (M) ALE3EI_1074 PF02016 LD-carboxypeptidase N-terminal domain ALE3EI_1074 PF17676 LD-carboxypeptidase C-terminal domain ALE3EI_1075 PF02021 Uncharacterised protein family UPF0102 ALE3EI_1076 PF02559 CarD-like/TRCF domain ALE3EI_1076 PF00270 DEAD/DEAH box helicase ALE3EI_1076 PF17757 UvrB interaction domain ALE3EI_1076 PF00271 Helicase conserved C-terminal domain ALE3EI_1076 PF03461 TRCF domain ALE3EI_1077 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALE3EI_1078 PF00266 Aminotransferase class-V ALE3EI_1081 PF00270 DEAD/DEAH box helicase ALE3EI_1081 PF00271 Helicase conserved C-terminal domain ALE3EI_1081 PF08494 DEAD/H associated ALE3EI_1082 PF01068 ATP dependent DNA ligase domain ALE3EI_1085 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain ALE3EI_1087 PF01842 ACT domain ALE3EI_1087 PF00696 Amino acid kinase family ALE3EI_1089 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) ALE3EI_1089 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 ALE3EI_1091 PF12833 Helix-turn-helix domain ALE3EI_1091 PF14525 AraC-binding-like domain ALE3EI_1094 PF12706 Beta-lactamase superfamily domain ALE3EI_1099 PF00672 HAMP domain ALE3EI_1099 PF00211 Adenylate and Guanylate cyclase catalytic domain ALE3EI_1100 PF01966 HD domain ALE3EI_1100 PF00072 Response regulator receiver domain ALE3EI_1101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_1101 PF08448 PAS fold ALE3EI_1101 PF08447 PAS fold ALE3EI_1102 PF00072 Response regulator receiver domain ALE3EI_1102 PF13426 PAS domain ALE3EI_1102 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_1108 PF01451 Low molecular weight phosphotyrosine protein phosphatase ALE3EI_1111 PF01022 Bacterial regulatory protein, arsR family ALE3EI_1113 PF12681 Glyoxalase-like domain ALE3EI_1114 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALE3EI_1114 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALE3EI_1116 PF00571 CBS domain ALE3EI_1116 PF01769 Divalent cation transporter ALE3EI_1116 PF03448 MgtE intracellular N domain ALE3EI_1117 PF00398 Ribosomal RNA adenine dimethylase ALE3EI_1121 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALE3EI_1121 PF02403 Seryl-tRNA synthetase N-terminal domain ALE3EI_1123 PF01687 Riboflavin kinase ALE3EI_1123 PF06574 FAD synthetase ALE3EI_1124 PF01195 Peptidyl-tRNA hydrolase ALE3EI_1125 PF14693 Ribosomal protein TL5, C-terminal domain ALE3EI_1125 PF01386 Ribosomal L25p family ALE3EI_1126 PF14572 Phosphoribosyl synthetase-associated domain ALE3EI_1126 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ALE3EI_1130 PF13180 PDZ domain ALE3EI_1130 PF03572 Peptidase family S41 ALE3EI_1132 PF01914 MarC family integral membrane protein ALE3EI_1136 PF02867 Ribonucleotide reductase, barrel domain ALE3EI_1136 PF00317 Ribonucleotide reductase, all-alpha domain ALE3EI_1136 PF03477 ATP cone domain ALE3EI_1144 PF00916 Sulfate permease family ALE3EI_1144 PF01740 STAS domain ALE3EI_1145 PF00484 Carbonic anhydrase ALE3EI_1147 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_1147 PF00593 TonB dependent receptor ALE3EI_1149 PF01966 HD domain ALE3EI_1149 PF13286 Phosphohydrolase-associated domain ALE3EI_1150 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ALE3EI_1150 PF02780 Transketolase, C-terminal domain ALE3EI_1150 PF02779 Transketolase, pyrimidine binding domain ALE3EI_1151 PF14437 MafB19-like deaminase ALE3EI_1152 PF00313 'Cold-shock' DNA-binding domain ALE3EI_1154 PF00654 Voltage gated chloride channel ALE3EI_1155 PF01336 OB-fold nucleic acid binding domain ALE3EI_1155 PF00152 tRNA synthetases class II (D, K and N) ALE3EI_1155 PF02938 GAD domain ALE3EI_1156 PF00593 TonB dependent receptor ALE3EI_1156 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_1158 PF00873 AcrB/AcrD/AcrF family ALE3EI_1159 PF00529 HlyD membrane-fusion protein of T1SS ALE3EI_1159 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALE3EI_1161 PF00440 Bacterial regulatory proteins, tetR family ALE3EI_1161 PF08361 MAATS-type transcriptional repressor, C-terminal region ALE3EI_1162 PF00348 Polyprenyl synthetase ALE3EI_1164 PF16078 2-oxoglutarate dehydrogenase N-terminus ALE3EI_1164 PF02779 Transketolase, pyrimidine binding domain ALE3EI_1164 PF16870 2-oxoglutarate dehydrogenase C-terminal ALE3EI_1164 PF00676 Dehydrogenase E1 component ALE3EI_1165 PF00364 Biotin-requiring enzyme ALE3EI_1165 PF02817 e3 binding domain ALE3EI_1165 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALE3EI_1166 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_1166 PF00072 Response regulator receiver domain ALE3EI_1167 PF07730 Histidine kinase ALE3EI_1167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_1167 PF05384 Sensor protein DegS ALE3EI_1169 PF01026 TatD related DNase ALE3EI_1170 PF17763 Glutaminase/Asparaginase C-terminal domain ALE3EI_1170 PF00710 Asparaginase, N-terminal ALE3EI_1172 PF01618 MotA/TolQ/ExbB proton channel family ALE3EI_1178 PF04552 Sigma-54, DNA binding domain ALE3EI_1178 PF00309 Sigma-54 factor, Activator interacting domain (AID) ALE3EI_1178 PF04963 Sigma-54 factor, core binding domain ALE3EI_1179 PF00152 tRNA synthetases class II (D, K and N) ALE3EI_1179 PF01336 OB-fold nucleic acid binding domain ALE3EI_1182 PF01765 Ribosome recycling factor ALE3EI_1183 PF00696 Amino acid kinase family ALE3EI_1184 PF00889 Elongation factor TS ALE3EI_1185 PF00318 Ribosomal protein S2 ALE3EI_1186 PF00380 Ribosomal protein S9/S16 ALE3EI_1187 PF00572 Ribosomal protein L13 ALE3EI_1190 PF01612 3'-5' exonuclease ALE3EI_1190 PF01367 5'-3' exonuclease, C-terminal SAM fold ALE3EI_1190 PF00476 DNA polymerase family A ALE3EI_1190 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ALE3EI_1192 PF00072 Response regulator receiver domain ALE3EI_1192 PF03861 ANTAR domain ALE3EI_1193 PF13581 Histidine kinase-like ATPase domain ALE3EI_1193 PF13426 PAS domain ALE3EI_1193 PF07568 Histidine kinase ALE3EI_1194 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALE3EI_1194 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALE3EI_1194 PF00034 Cytochrome c ALE3EI_1196 PF01112 Asparaginase ALE3EI_1197 PF03575 Peptidase family S51 ALE3EI_1198 PF02875 Mur ligase family, glutamate ligase domain ALE3EI_1198 PF08443 RimK-like ATP-grasp domain ALE3EI_1198 PF08245 Mur ligase middle domain ALE3EI_1200 PF04397 LytTr DNA-binding domain ALE3EI_1200 PF00072 Response regulator receiver domain ALE3EI_1201 PF13581 Histidine kinase-like ATPase domain ALE3EI_1201 PF07568 Histidine kinase ALE3EI_1201 PF13426 PAS domain ALE3EI_1202 PF07690 Major Facilitator Superfamily ALE3EI_1203 PF01112 Asparaginase ALE3EI_1204 PF17678 Glycosyl hydrolase family 92 N-terminal domain ALE3EI_1204 PF07971 Glycosyl hydrolase family 92 ALE3EI_1205 PF10518 TAT (twin-arginine translocation) pathway signal sequence ALE3EI_1205 PF00149 Calcineurin-like phosphoesterase ALE3EI_1206 PF00085 Thioredoxin ALE3EI_1210 PF01522 Polysaccharide deacetylase ALE3EI_1213 PF04820 Tryptophan halogenase ALE3EI_1214 PF00221 Aromatic amino acid lyase ALE3EI_1217 PF07977 FabA-like domain ALE3EI_1222 PF00550 Phosphopantetheine attachment site ALE3EI_1223 PF02801 Beta-ketoacyl synthase, C-terminal domain ALE3EI_1223 PF00109 Beta-ketoacyl synthase, N-terminal domain ALE3EI_1225 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain ALE3EI_1225 PF01522 Polysaccharide deacetylase ALE3EI_1227 PF07977 FabA-like domain ALE3EI_1228 PF00535 Glycosyl transferase family 2 ALE3EI_1232 PF00501 AMP-binding enzyme ALE3EI_1232 PF14535 AMP-binding enzyme C-terminal domain ALE3EI_1234 PF00582 Universal stress protein family ALE3EI_1235 PF02576 RimP N-terminal domain ALE3EI_1236 PF13184 NusA-like KH domain ALE3EI_1236 PF08529 NusA N-terminal domain ALE3EI_1236 PF00575 S1 RNA binding domain ALE3EI_1237 PF00009 Elongation factor Tu GTP binding domain ALE3EI_1237 PF11987 Translation-initiation factor 2 ALE3EI_1237 PF04760 Translation initiation factor IF-2, N-terminal region ALE3EI_1240 PF00037 4Fe-4S binding domain ALE3EI_1240 PF13247 4Fe-4S dicluster domain ALE3EI_1241 PF00318 Ribosomal protein S2 ALE3EI_1245 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALE3EI_1245 PF06481 COX Aromatic Rich Motif ALE3EI_1246 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALE3EI_1247 PF01554 MatE ALE3EI_1249 PF05496 Holliday junction DNA helicase RuvB P-loop domain ALE3EI_1249 PF17864 RuvB AAA lid domain ALE3EI_1249 PF05491 RuvB C-terminal winged helix domain ALE3EI_1250 PF00067 Cytochrome P450 ALE3EI_1251 PF08331 Domain of unknown function (DUF1730) ALE3EI_1252 PF01515 Phosphate acetyl/butaryl transferase ALE3EI_1252 PF03949 Malic enzyme, NAD binding domain ALE3EI_1252 PF00390 Malic enzyme, N-terminal domain ALE3EI_1253 PF01330 RuvA N terminal domain ALE3EI_1253 PF07499 RuvA, C-terminal domain ALE3EI_1255 PF01597 Glycine cleavage H-protein ALE3EI_1260 PF16123 Hydroxyacylglutathione hydrolase C-terminus ALE3EI_1260 PF00753 Metallo-beta-lactamase superfamily ALE3EI_1261 PF01040 UbiA prenyltransferase family ALE3EI_1262 PF00510 Cytochrome c oxidase subunit III ALE3EI_1263 PF00510 Cytochrome c oxidase subunit III ALE3EI_1267 PF02630 SCO1/SenC ALE3EI_1268 PF04238 Protein of unknown function (DUF420) ALE3EI_1270 PF00005 ABC transporter ALE3EI_1271 PF02687 FtsX-like permease family ALE3EI_1271 PF00005 ABC transporter ALE3EI_1271 PF12704 MacB-like periplasmic core domain ALE3EI_1272 PF00005 ABC transporter ALE3EI_1272 PF12704 MacB-like periplasmic core domain ALE3EI_1272 PF02687 FtsX-like permease family ALE3EI_1275 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALE3EI_1276 PF00814 Glycoprotease family ALE3EI_1281 PF05552 Conserved TM helix ALE3EI_1281 PF00924 Mechanosensitive ion channel ALE3EI_1282 PF03190 Protein of unknown function, DUF255 ALE3EI_1284 PF01106 NifU-like domain ALE3EI_1288 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_1288 PF07694 5TMR of 5TMR-LYT ALE3EI_1288 PF06580 Histidine kinase ALE3EI_1289 PF04397 LytTr DNA-binding domain ALE3EI_1289 PF00072 Response regulator receiver domain ALE3EI_1290 PF01177 Asp/Glu/Hydantoin racemase ALE3EI_1294 PF01255 Putative undecaprenyl diphosphate synthase ALE3EI_1296 PF01513 ATP-NAD kinase ALE3EI_1298 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ALE3EI_1299 PF00561 alpha/beta hydrolase fold ALE3EI_1303 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALE3EI_1303 PF05697 Bacterial trigger factor protein (TF) ALE3EI_1303 PF05698 Bacterial trigger factor protein (TF) C-terminus ALE3EI_1304 PF00574 Clp protease ALE3EI_1305 PF06689 ClpX C4-type zinc finger ALE3EI_1305 PF07724 AAA domain (Cdc48 subfamily) ALE3EI_1305 PF10431 C-terminal, D2-small domain, of ClpB protein ALE3EI_1311 PF01712 Deoxynucleoside kinase ALE3EI_1312 PF00588 SpoU rRNA Methylase family ALE3EI_1312 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALE3EI_1313 PF05192 MutS domain III ALE3EI_1313 PF05190 MutS family domain IV ALE3EI_1313 PF00488 MutS domain V ALE3EI_1313 PF01624 MutS domain I ALE3EI_1313 PF05188 MutS domain II ALE3EI_1314 PF08818 Domain of unknown function (DU1801) ALE3EI_1327 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALE3EI_1328 PF16363 GDP-mannose 4,6 dehydratase ALE3EI_1329 PF01979 Amidohydrolase family ALE3EI_1331 PF00698 Acyl transferase domain ALE3EI_1332 PF03881 Fructosamine kinase ALE3EI_1333 PF00186 Dihydrofolate reductase ALE3EI_1337 PF10017 Histidine-specific methyltransferase, SAM-dependent ALE3EI_1338 PF12867 DinB superfamily ALE3EI_1338 PF03781 Sulfatase-modifying factor enzyme 1 ALE3EI_1341 PF00303 Thymidylate synthase ALE3EI_1342 PF01773 Na+ dependent nucleoside transporter N-terminus ALE3EI_1342 PF07662 Na+ dependent nucleoside transporter C-terminus ALE3EI_1342 PF07670 Nucleoside recognition ALE3EI_1344 PF00766 Electron transfer flavoprotein FAD-binding domain ALE3EI_1344 PF01012 Electron transfer flavoprotein domain ALE3EI_1346 PF02779 Transketolase, pyrimidine binding domain ALE3EI_1346 PF00364 Biotin-requiring enzyme ALE3EI_1346 PF02780 Transketolase, C-terminal domain ALE3EI_1347 PF00593 TonB dependent receptor ALE3EI_1347 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_1348 PF01551 Peptidase family M23 ALE3EI_1349 PF03030 Inorganic H+ pyrophosphatase ALE3EI_1350 PF13194 Domain of unknown function (DUF4010) ALE3EI_1352 PF02503 Polyphosphate kinase middle domain ALE3EI_1352 PF13089 Polyphosphate kinase N-terminal domain ALE3EI_1352 PF17941 Polyphosphate kinase C-terminal domain 1 ALE3EI_1352 PF13090 Polyphosphate kinase C-terminal domain 2 ALE3EI_1353 PF01712 Deoxynucleoside kinase ALE3EI_1357 PF00593 TonB dependent receptor ALE3EI_1357 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_1361 PF00440 Bacterial regulatory proteins, tetR family ALE3EI_1361 PF17922 Tetracyclin repressor-like, C-terminal domain ALE3EI_1362 PF00970 Oxidoreductase FAD-binding domain ALE3EI_1362 PF00111 2Fe-2S iron-sulfur cluster binding domain ALE3EI_1362 PF00175 Oxidoreductase NAD-binding domain ALE3EI_1363 PF05138 Phenylacetic acid catabolic protein ALE3EI_1364 PF06243 Phenylacetic acid degradation B ALE3EI_1365 PF05138 Phenylacetic acid catabolic protein ALE3EI_1366 PF01883 Iron-sulfur cluster assembly protein ALE3EI_1368 PF00378 Enoyl-CoA hydratase/isomerase ALE3EI_1369 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain ALE3EI_1369 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALE3EI_1369 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALE3EI_1371 PF00108 Thiolase, N-terminal domain ALE3EI_1371 PF02803 Thiolase, C-terminal domain ALE3EI_1373 PF00171 Aldehyde dehydrogenase family ALE3EI_1373 PF01575 MaoC like domain ALE3EI_1375 PF00132 Bacterial transferase hexapeptide (six repeats) ALE3EI_1376 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALE3EI_1376 PF00364 Biotin-requiring enzyme ALE3EI_1376 PF02817 e3 binding domain ALE3EI_1377 PF01063 Amino-transferase class IV ALE3EI_1378 PF02779 Transketolase, pyrimidine binding domain ALE3EI_1378 PF02780 Transketolase, C-terminal domain ALE3EI_1381 PF01175 Urocanase Rossmann-like domain ALE3EI_1381 PF17391 Urocanase N-terminal domain ALE3EI_1381 PF17392 Urocanase C-terminal domain ALE3EI_1389 PF00291 Pyridoxal-phosphate dependent enzyme ALE3EI_1390 PF00877 NlpC/P60 family ALE3EI_1390 PF01476 LysM domain ALE3EI_1391 PF00202 Aminotransferase class-III ALE3EI_1394 PF00041 Fibronectin type III domain ALE3EI_1394 PF00704 Glycosyl hydrolases family 18 ALE3EI_1399 PF00152 tRNA synthetases class II (D, K and N) ALE3EI_1399 PF01336 OB-fold nucleic acid binding domain ALE3EI_1401 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_1401 PF00072 Response regulator receiver domain ALE3EI_1403 PF03099 Biotin/lipoate A/B protein ligase family ALE3EI_1405 PF00691 OmpA family ALE3EI_1405 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALE3EI_1409 PF00072 Response regulator receiver domain ALE3EI_1409 PF07494 Two component regulator propeller ALE3EI_1409 PF12833 Helix-turn-helix domain ALE3EI_1409 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_1409 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_1409 PF07495 Y_Y_Y domain ALE3EI_1411 PF01351 Ribonuclease HII ALE3EI_1419 PF02770 Acyl-CoA dehydrogenase, middle domain ALE3EI_1419 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALE3EI_1419 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALE3EI_1420 PF03702 Anhydro-N-acetylmuramic acid kinase ALE3EI_1421 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALE3EI_1421 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALE3EI_1422 PF03600 Citrate transporter ALE3EI_1423 PF01618 MotA/TolQ/ExbB proton channel family ALE3EI_1424 PF02472 Biopolymer transport protein ExbD/TolR ALE3EI_1427 PF08245 Mur ligase middle domain ALE3EI_1427 PF02875 Mur ligase family, glutamate ligase domain ALE3EI_1428 PF02875 Mur ligase family, glutamate ligase domain ALE3EI_1428 PF01225 Mur ligase family, catalytic domain ALE3EI_1428 PF08245 Mur ligase middle domain ALE3EI_1429 PF03781 Sulfatase-modifying factor enzyme 1 ALE3EI_1433 PF00676 Dehydrogenase E1 component ALE3EI_1434 PF00364 Biotin-requiring enzyme ALE3EI_1434 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALE3EI_1434 PF02817 e3 binding domain ALE3EI_1437 PF00483 Nucleotidyl transferase ALE3EI_1437 PF01050 Mannose-6-phosphate isomerase ALE3EI_1439 PF00005 ABC transporter ALE3EI_1440 PF02405 Permease MlaE ALE3EI_1441 PF00245 Alkaline phosphatase ALE3EI_1442 PF00535 Glycosyl transferase family 2 ALE3EI_1444 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALE3EI_1444 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALE3EI_1445 PF02347 Glycine cleavage system P-protein ALE3EI_1449 PF01432 Peptidase family M3 ALE3EI_1450 PF00731 AIR carboxylase ALE3EI_1451 PF02222 ATP-grasp domain ALE3EI_1451 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ALE3EI_1453 PF01018 GTP1/OBG ALE3EI_1453 PF01926 50S ribosome-binding GTPase ALE3EI_1456 PF01225 Mur ligase family, catalytic domain ALE3EI_1456 PF02875 Mur ligase family, glutamate ligase domain ALE3EI_1456 PF08245 Mur ligase middle domain ALE3EI_1459 PF04002 RadC-like JAB domain ALE3EI_1465 PF12002 MgsA AAA+ ATPase C terminal ALE3EI_1465 PF00004 ATPase family associated with various cellular activities (AAA) ALE3EI_1465 PF16193 AAA C-terminal domain ALE3EI_1467 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALE3EI_1467 PF00588 SpoU rRNA Methylase family ALE3EI_1470 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_1470 PF00593 TonB dependent receptor ALE3EI_1473 PF00177 Ribosomal protein S7p/S5e ALE3EI_1474 PF00009 Elongation factor Tu GTP binding domain ALE3EI_1474 PF03764 Elongation factor G, domain IV ALE3EI_1474 PF14492 Elongation Factor G, domain II ALE3EI_1474 PF00679 Elongation factor G C-terminus ALE3EI_1474 PF03144 Elongation factor Tu domain 2 ALE3EI_1475 PF00338 Ribosomal protein S10p/S20e ALE3EI_1476 PF00297 Ribosomal protein L3 ALE3EI_1477 PF00573 Ribosomal protein L4/L1 family ALE3EI_1478 PF00276 Ribosomal protein L23 ALE3EI_1479 PF00181 Ribosomal Proteins L2, RNA binding domain ALE3EI_1479 PF03947 Ribosomal Proteins L2, C-terminal domain ALE3EI_1480 PF00203 Ribosomal protein S19 ALE3EI_1481 PF00237 Ribosomal protein L22p/L17e ALE3EI_1482 PF00189 Ribosomal protein S3, C-terminal domain ALE3EI_1482 PF07650 KH domain ALE3EI_1483 PF00252 Ribosomal protein L16p/L10e ALE3EI_1484 PF00831 Ribosomal L29 protein ALE3EI_1485 PF00366 Ribosomal protein S17 ALE3EI_1486 PF00238 Ribosomal protein L14p/L23e ALE3EI_1487 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ALE3EI_1487 PF00467 KOW motif ALE3EI_1488 PF00281 Ribosomal protein L5 ALE3EI_1488 PF00673 ribosomal L5P family C-terminus ALE3EI_1489 PF00253 Ribosomal protein S14p/S29e ALE3EI_1490 PF00410 Ribosomal protein S8 ALE3EI_1491 PF00347 Ribosomal protein L6 ALE3EI_1492 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ALE3EI_1493 PF03719 Ribosomal protein S5, C-terminal domain ALE3EI_1493 PF00333 Ribosomal protein S5, N-terminal domain ALE3EI_1494 PF00327 Ribosomal protein L30p/L7e ALE3EI_1495 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ALE3EI_1496 PF00344 SecY translocase ALE3EI_1497 PF01176 Translation initiation factor 1A / IF-1 ALE3EI_1498 PF00416 Ribosomal protein S13/S18 ALE3EI_1499 PF00411 Ribosomal protein S11 ALE3EI_1500 PF01479 S4 domain ALE3EI_1500 PF00163 Ribosomal protein S4/S9 N-terminal domain ALE3EI_1501 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ALE3EI_1501 PF01000 RNA polymerase Rpb3/RpoA insert domain ALE3EI_1501 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ALE3EI_1502 PF01196 Ribosomal protein L17 ALE3EI_1503 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ALE3EI_1503 PF00117 Glutamine amidotransferase class-I ALE3EI_1504 PF03952 Enolase, N-terminal domain ALE3EI_1504 PF00113 Enolase, C-terminal TIM barrel domain ALE3EI_1505 PF00285 Citrate synthase, C-terminal domain ALE3EI_1509 PF01370 NAD dependent epimerase/dehydratase family ALE3EI_1509 PF08338 Domain of unknown function (DUF1731) ALE3EI_1511 PF03485 Arginyl tRNA synthetase N terminal domain ALE3EI_1511 PF05746 DALR anticodon binding domain ALE3EI_1511 PF00750 tRNA synthetases class I (R) ALE3EI_1516 PF00072 Response regulator receiver domain ALE3EI_1516 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_1517 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_1517 PF05231 MASE1 ALE3EI_1517 PF07730 Histidine kinase ALE3EI_1534 PF00270 DEAD/DEAH box helicase ALE3EI_1534 PF00271 Helicase conserved C-terminal domain ALE3EI_1536 PF00448 SRP54-type protein, GTPase domain ALE3EI_1536 PF02881 SRP54-type protein, helical bundle domain ALE3EI_1536 PF02978 Signal peptide binding domain ALE3EI_1537 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ALE3EI_1537 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ALE3EI_1538 PF06803 Protein of unknown function (DUF1232) ALE3EI_1547 PF05872 Bacterial protein of unknown function (DUF853) ALE3EI_1548 PF01042 Endoribonuclease L-PSP ALE3EI_1549 PF04055 Radical SAM superfamily ALE3EI_1551 PF01751 Toprim domain ALE3EI_1551 PF00986 DNA gyrase B subunit, carboxyl terminus ALE3EI_1551 PF00204 DNA gyrase B ALE3EI_1551 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_1553 PF00056 lactate/malate dehydrogenase, NAD binding domain ALE3EI_1553 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ALE3EI_1554 PF07549 SecD/SecF GG Motif ALE3EI_1554 PF02355 Protein export membrane protein ALE3EI_1556 PF01790 Prolipoprotein diacylglyceryl transferase ALE3EI_1557 PF09190 DALR domain ALE3EI_1557 PF01406 tRNA synthetases class I (C) catalytic domain ALE3EI_1558 PF01227 GTP cyclohydrolase I ALE3EI_1563 PF03129 Anticodon binding domain ALE3EI_1563 PF09180 Prolyl-tRNA synthetase, C-terminal ALE3EI_1563 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALE3EI_1564 PF01649 Ribosomal protein S20 ALE3EI_1572 PF01914 MarC family integral membrane protein ALE3EI_1577 PF12697 Alpha/beta hydrolase family ALE3EI_1580 PF01979 Amidohydrolase family ALE3EI_1583 PF00144 Beta-lactamase ALE3EI_1588 PF14870 Photosynthesis system II assembly factor YCF48 ALE3EI_1598 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system ALE3EI_1615 PF01022 Bacterial regulatory protein, arsR family ALE3EI_1616 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ALE3EI_1616 PF18766 SWI2/SNF2 ATPase ALE3EI_1616 PF12008 Type I restriction and modification enzyme - subunit R C terminal ALE3EI_1618 PF01420 Type I restriction modification DNA specificity domain ALE3EI_1619 PF12161 HsdM N-terminal domain ALE3EI_1619 PF02384 N-6 DNA Methylase ALE3EI_1625 PF02899 Phage integrase, N-terminal SAM-like domain ALE3EI_1625 PF00589 Phage integrase family ALE3EI_1626 PF01467 Cytidylyltransferase-like ALE3EI_1627 PF01820 D-ala D-ala ligase N-terminus ALE3EI_1627 PF07478 D-ala D-ala ligase C-terminus ALE3EI_1629 PF01479 S4 domain ALE3EI_1629 PF00849 RNA pseudouridylate synthase ALE3EI_1630 PF03883 Peroxide stress protein YaaA ALE3EI_1637 PF00290 Tryptophan synthase alpha chain ALE3EI_1638 PF00291 Pyridoxal-phosphate dependent enzyme ALE3EI_1639 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ALE3EI_1640 PF00218 Indole-3-glycerol phosphate synthase ALE3EI_1641 PF02885 Glycosyl transferase family, helical bundle domain ALE3EI_1641 PF00591 Glycosyl transferase family, a/b domain ALE3EI_1642 PF00117 Glutamine amidotransferase class-I ALE3EI_1643 PF04715 Anthranilate synthase component I, N terminal region ALE3EI_1643 PF00425 chorismate binding enzyme ALE3EI_1647 PF01047 MarR family ALE3EI_1648 PF00578 AhpC/TSA family ALE3EI_1650 PF00581 Rhodanese-like domain ALE3EI_1651 PF12368 Rhodanase C-terminal ALE3EI_1651 PF00581 Rhodanese-like domain ALE3EI_1651 PF17773 UPF0176 acylphosphatase like domain ALE3EI_1658 PF06123 Inner membrane protein CreD ALE3EI_1662 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_1662 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_1662 PF00072 Response regulator receiver domain ALE3EI_1662 PF09308 LuxQ, periplasmic ALE3EI_1664 PF00793 DAHP synthetase I family ALE3EI_1665 PF14492 Elongation Factor G, domain II ALE3EI_1665 PF00009 Elongation factor Tu GTP binding domain ALE3EI_1665 PF03144 Elongation factor Tu domain 2 ALE3EI_1665 PF00679 Elongation factor G C-terminus ALE3EI_1672 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALE3EI_1676 PF13439 Glycosyltransferase Family 4 ALE3EI_1676 PF00534 Glycosyl transferases group 1 ALE3EI_1677 PF05523 WxcM-like, C-terminal ALE3EI_1678 PF00535 Glycosyl transferase family 2 ALE3EI_1680 PF00082 Subtilase family ALE3EI_1682 PF00005 ABC transporter ALE3EI_1687 PF07969 Amidohydrolase family ALE3EI_1694 PF07075 Protein of unknown function (DUF1343) ALE3EI_1695 PF12704 MacB-like periplasmic core domain ALE3EI_1695 PF02687 FtsX-like permease family ALE3EI_1696 PF00291 Pyridoxal-phosphate dependent enzyme ALE3EI_1696 PF00571 CBS domain ALE3EI_1700 PF07885 Ion channel ALE3EI_1700 PF02254 TrkA-N domain ALE3EI_1701 PF01235 Sodium:alanine symporter family ALE3EI_1703 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALE3EI_1703 PF02770 Acyl-CoA dehydrogenase, middle domain ALE3EI_1703 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALE3EI_1705 PF01165 Ribosomal protein S21 ALE3EI_1707 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus ALE3EI_1707 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ALE3EI_1708 PF03144 Elongation factor Tu domain 2 ALE3EI_1708 PF03143 Elongation factor Tu C-terminal domain ALE3EI_1708 PF00009 Elongation factor Tu GTP binding domain ALE3EI_1709 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ALE3EI_1710 PF00467 KOW motif ALE3EI_1710 PF02357 Transcription termination factor nusG ALE3EI_1711 PF03946 Ribosomal protein L11, N-terminal domain ALE3EI_1711 PF00298 Ribosomal protein L11, RNA binding domain ALE3EI_1712 PF00687 Ribosomal protein L1p/L10e family ALE3EI_1713 PF00466 Ribosomal protein L10 ALE3EI_1714 PF00542 Ribosomal protein L7/L12 C-terminal domain ALE3EI_1714 PF16320 Ribosomal protein L7/L12 dimerisation domain ALE3EI_1715 PF04563 RNA polymerase beta subunit ALE3EI_1715 PF04560 RNA polymerase Rpb2, domain 7 ALE3EI_1715 PF04561 RNA polymerase Rpb2, domain 2 ALE3EI_1715 PF04565 RNA polymerase Rpb2, domain 3 ALE3EI_1715 PF10385 RNA polymerase beta subunit external 1 domain ALE3EI_1715 PF00562 RNA polymerase Rpb2, domain 6 ALE3EI_1716 PF04998 RNA polymerase Rpb1, domain 5 ALE3EI_1716 PF04997 RNA polymerase Rpb1, domain 1 ALE3EI_1716 PF00623 RNA polymerase Rpb1, domain 2 ALE3EI_1716 PF04983 RNA polymerase Rpb1, domain 3 ALE3EI_1716 PF05000 RNA polymerase Rpb1, domain 4 ALE3EI_1720 PF16658 Class II release factor RF3, C-terminal domain ALE3EI_1720 PF00009 Elongation factor Tu GTP binding domain ALE3EI_1720 PF03144 Elongation factor Tu domain 2 ALE3EI_1724 PF00691 OmpA family ALE3EI_1724 PF00223 Photosystem I psaA/psaB protein ALE3EI_1725 PF00293 NUDIX domain ALE3EI_1727 PF01238 Phosphomannose isomerase type I ALE3EI_1736 PF00183 Hsp90 protein ALE3EI_1737 PF00326 Prolyl oligopeptidase family ALE3EI_1737 PF07676 WD40-like Beta Propeller Repeat ALE3EI_1737 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ALE3EI_1738 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALE3EI_1738 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALE3EI_1741 PF00474 Sodium:solute symporter family ALE3EI_1743 PF13662 Toprim domain ALE3EI_1743 PF02132 RecR protein ALE3EI_1745 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALE3EI_1745 PF00364 Biotin-requiring enzyme ALE3EI_1745 PF02817 e3 binding domain ALE3EI_1747 PF00929 Exonuclease ALE3EI_1748 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALE3EI_1750 PF02464 Competence-damaged protein ALE3EI_1750 PF18146 Damage-inducible protein CinA KH domain ALE3EI_1750 PF00994 Probable molybdopterin binding domain ALE3EI_1751 PF00830 Ribosomal L28 family ALE3EI_1752 PF00471 Ribosomal protein L33 ALE3EI_1754 PF00448 SRP54-type protein, GTPase domain ALE3EI_1754 PF02881 SRP54-type protein, helical bundle domain ALE3EI_1756 PF04055 Radical SAM superfamily ALE3EI_1756 PF18693 TRAM domain ALE3EI_1756 PF00919 Uncharacterized protein family UPF0004 ALE3EI_1763 PF10079 Bacillithiol biosynthesis BshC ALE3EI_1764 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ALE3EI_1764 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ALE3EI_1766 PF00117 Glutamine amidotransferase class-I ALE3EI_1766 PF00958 GMP synthase C terminal domain ALE3EI_1766 PF02540 NAD synthase ALE3EI_1770 PF12843 Putative quorum-sensing-regulated virulence factor ALE3EI_1771 PF00117 Glutamine amidotransferase class-I ALE3EI_1771 PF06418 CTP synthase N-terminus ALE3EI_1772 PF14849 YidC periplasmic domain ALE3EI_1772 PF02096 60Kd inner membrane protein ALE3EI_1775 PF00082 Subtilase family ALE3EI_1776 PF03060 Nitronate monooxygenase ALE3EI_1780 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALE3EI_1780 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain ALE3EI_1781 PF08442 ATP-grasp domain ALE3EI_1781 PF00549 CoA-ligase ALE3EI_1784 PF10011 Predicted membrane protein (DUF2254) ALE3EI_1785 PF00011 Hsp20/alpha crystallin family ALE3EI_1786 PF01479 S4 domain ALE3EI_1786 PF00849 RNA pseudouridylate synthase ALE3EI_1789 PF17757 UvrB interaction domain ALE3EI_1789 PF04851 Type III restriction enzyme, res subunit ALE3EI_1789 PF12344 Ultra-violet resistance protein B ALE3EI_1789 PF00271 Helicase conserved C-terminal domain ALE3EI_1791 PF13649 Methyltransferase domain ALE3EI_1795 PF00005 ABC transporter ALE3EI_1799 PF02628 Cytochrome oxidase assembly protein ALE3EI_1801 PF01368 DHH family ALE3EI_1801 PF01743 Poly A polymerase head domain ALE3EI_1801 PF00571 CBS domain ALE3EI_1801 PF02272 DHHA1 domain ALE3EI_1802 PF01300 Telomere recombination ALE3EI_1805 PF00535 Glycosyl transferase family 2 ALE3EI_1808 PF00535 Glycosyl transferase family 2 ALE3EI_1811 PF00535 Glycosyl transferase family 2 ALE3EI_1815 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ALE3EI_1815 PF14602 Hexapeptide repeat of succinyl-transferase ALE3EI_1815 PF00132 Bacterial transferase hexapeptide (six repeats) ALE3EI_1816 PF03652 Holliday junction resolvase ALE3EI_1817 PF01327 Polypeptide deformylase ALE3EI_1819 PF03819 MazG nucleotide pyrophosphohydrolase domain ALE3EI_1822 PF01488 Shikimate / quinate 5-dehydrogenase ALE3EI_1822 PF08501 Shikimate dehydrogenase substrate binding domain ALE3EI_1822 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ALE3EI_1826 PF00202 Aminotransferase class-III ALE3EI_1828 PF00709 Adenylosuccinate synthetase ALE3EI_1829 PF01475 Ferric uptake regulator family ALE3EI_1830 PF02824 TGS domain ALE3EI_1830 PF13291 ACT domain ALE3EI_1830 PF04607 Region found in RelA / SpoT proteins ALE3EI_1831 PF01435 Peptidase family M48 ALE3EI_1831 PF16491 CAAX prenyl protease N-terminal, five membrane helices ALE3EI_1833 PF00588 SpoU rRNA Methylase family ALE3EI_1833 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALE3EI_1837 PF01979 Amidohydrolase family ALE3EI_1839 PF07687 Peptidase dimerisation domain ALE3EI_1839 PF01546 Peptidase family M20/M25/M40 ALE3EI_1840 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALE3EI_1842 PF02272 DHHA1 domain ALE3EI_1842 PF01368 DHH family ALE3EI_1843 PF00334 Nucleoside diphosphate kinase ALE3EI_1846 PF02463 RecF/RecN/SMC N terminal domain ALE3EI_1848 PF00885 6,7-dimethyl-8-ribityllumazine synthase ALE3EI_1850 PF01119 DNA mismatch repair protein, C-terminal domain ALE3EI_1850 PF08676 MutL C terminal dimerisation domain ALE3EI_1855 PF10502 Signal peptidase, peptidase S26 ALE3EI_1856 PF01113 Dihydrodipicolinate reductase, N-terminus ALE3EI_1856 PF05173 Dihydrodipicolinate reductase, C-terminus ALE3EI_1858 PF02195 ParB-like nuclease domain ALE3EI_1858 PF17762 HTH domain found in ParB protein ALE3EI_1859 PF13614 AAA domain ALE3EI_1863 PF02310 B12 binding domain ALE3EI_1863 PF01642 Methylmalonyl-CoA mutase ALE3EI_1865 PF01642 Methylmalonyl-CoA mutase ALE3EI_1867 PF00485 Phosphoribulokinase / Uridine kinase family ALE3EI_1868 PF00034 Cytochrome c ALE3EI_1868 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALE3EI_1869 PF07995 Glucose / Sorbosone dehydrogenase ALE3EI_1872 PF02080 TrkA-C domain ALE3EI_1872 PF03600 Citrate transporter ALE3EI_1874 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALE3EI_1887 PF03466 LysR substrate binding domain ALE3EI_1887 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALE3EI_1889 PF07726 ATPase family associated with various cellular activities (AAA) ALE3EI_1889 PF17863 AAA lid domain ALE3EI_1895 PF03458 UPF0126 domain ALE3EI_1896 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALE3EI_1901 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALE3EI_1903 PF00072 Response regulator receiver domain ALE3EI_1903 PF00211 Adenylate and Guanylate cyclase catalytic domain ALE3EI_1904 PF08818 Domain of unknown function (DU1801) ALE3EI_1909 PF06580 Histidine kinase ALE3EI_1909 PF07694 5TMR of 5TMR-LYT ALE3EI_1909 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_1912 PF00072 Response regulator receiver domain ALE3EI_1912 PF04397 LytTr DNA-binding domain ALE3EI_1913 PF01209 ubiE/COQ5 methyltransferase family ALE3EI_1919 PF04542 Sigma-70 region 2 ALE3EI_1919 PF08281 Sigma-70, region 4 ALE3EI_1925 PF00326 Prolyl oligopeptidase family ALE3EI_1928 PF01476 LysM domain ALE3EI_1928 PF04972 BON domain ALE3EI_1929 PF02469 Fasciclin domain ALE3EI_1930 PF01979 Amidohydrolase family ALE3EI_1931 PF00781 Diacylglycerol kinase catalytic domain ALE3EI_1935 PF04389 Peptidase family M28 ALE3EI_1935 PF04151 Bacterial pre-peptidase C-terminal domain ALE3EI_1939 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALE3EI_1939 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALE3EI_1939 PF02770 Acyl-CoA dehydrogenase, middle domain ALE3EI_1940 PF00108 Thiolase, N-terminal domain ALE3EI_1940 PF02803 Thiolase, C-terminal domain ALE3EI_1941 PF00378 Enoyl-CoA hydratase/isomerase ALE3EI_1941 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALE3EI_1941 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALE3EI_1943 PF00501 AMP-binding enzyme ALE3EI_1944 PF05547 Immune inhibitor A peptidase M6 ALE3EI_1945 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ALE3EI_1945 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ALE3EI_1945 PF02769 AIR synthase related protein, C-terminal domain ALE3EI_1948 PF01029 NusB family ALE3EI_1948 PF01189 16S rRNA methyltransferase RsmB/F ALE3EI_1952 PF04542 Sigma-70 region 2 ALE3EI_1952 PF08281 Sigma-70, region 4 ALE3EI_1953 PF00005 ABC transporter ALE3EI_1953 PF00664 ABC transporter transmembrane region ALE3EI_1954 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALE3EI_1954 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALE3EI_1954 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALE3EI_1954 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALE3EI_1955 PF00535 Glycosyl transferase family 2 ALE3EI_1957 PF01197 Ribosomal protein L31 ALE3EI_1962 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle ALE3EI_1964 PF04055 Radical SAM superfamily ALE3EI_1964 PF01938 TRAM domain ALE3EI_1964 PF00919 Uncharacterized protein family UPF0004 ALE3EI_1971 PF00468 Ribosomal protein L34 ALE3EI_1972 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ALE3EI_1972 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALE3EI_1972 PF02142 MGS-like domain ALE3EI_1975 PF02646 RmuC family ALE3EI_1976 PF00005 ABC transporter ALE3EI_1977 PF01032 FecCD transport family ALE3EI_1979 PF00593 TonB dependent receptor ALE3EI_1979 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_1983 PF04542 Sigma-70 region 2 ALE3EI_1983 PF08281 Sigma-70, region 4 ALE3EI_1987 PF08328 Adenylosuccinate lyase C-terminal ALE3EI_1987 PF00206 Lyase ALE3EI_1990 PF02146 Sir2 family ALE3EI_1991 PF00588 SpoU rRNA Methylase family ALE3EI_1994 PF01725 Ham1 family ALE3EI_1995 PF03880 DbpA RNA binding domain ALE3EI_1995 PF00270 DEAD/DEAH box helicase ALE3EI_1995 PF00271 Helicase conserved C-terminal domain ALE3EI_1997 PF00171 Aldehyde dehydrogenase family ALE3EI_1999 PF02590 Predicted SPOUT methyltransferase ALE3EI_2000 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALE3EI_2000 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALE3EI_2004 PF00271 Helicase conserved C-terminal domain ALE3EI_2004 PF04851 Type III restriction enzyme, res subunit ALE3EI_2004 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ALE3EI_2004 PF17764 3′ DNA-binding domain (3′BD) ALE3EI_2004 PF18074 Primosomal protein N C-terminal domain ALE3EI_2005 PF00072 Response regulator receiver domain ALE3EI_2005 PF04397 LytTr DNA-binding domain ALE3EI_2006 PF01250 Ribosomal protein S6 ALE3EI_2007 PF01084 Ribosomal protein S18 ALE3EI_2008 PF03948 Ribosomal protein L9, C-terminal domain ALE3EI_2008 PF01281 Ribosomal protein L9, N-terminal domain ALE3EI_2010 PF00005 ABC transporter ALE3EI_2010 PF02687 FtsX-like permease family ALE3EI_2010 PF12704 MacB-like periplasmic core domain ALE3EI_2011 PF13393 Histidyl-tRNA synthetase ALE3EI_2011 PF03129 Anticodon binding domain ALE3EI_2015 PF02080 TrkA-C domain ALE3EI_2015 PF02254 TrkA-N domain ALE3EI_2020 PF00011 Hsp20/alpha crystallin family ALE3EI_2021 PF07730 Histidine kinase ALE3EI_2021 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2021 PF00672 HAMP domain ALE3EI_2024 PF02622 Uncharacterized ACR, COG1678 ALE3EI_2025 PF00216 Bacterial DNA-binding protein ALE3EI_2026 PF02911 Formyl transferase, C-terminal domain ALE3EI_2026 PF00551 Formyl transferase ALE3EI_2027 PF00271 Helicase conserved C-terminal domain ALE3EI_2027 PF00270 DEAD/DEAH box helicase ALE3EI_2027 PF09382 RQC domain ALE3EI_2027 PF00570 HRDC domain ALE3EI_2027 PF16124 RecQ zinc-binding ALE3EI_2031 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALE3EI_2034 PF00875 DNA photolyase ALE3EI_2034 PF03441 FAD binding domain of DNA photolyase ALE3EI_2036 PF00230 Major intrinsic protein ALE3EI_2040 PF02585 GlcNAc-PI de-N-acetylase ALE3EI_2043 PF02545 Maf-like protein ALE3EI_2050 PF01578 Cytochrome C assembly protein ALE3EI_2050 PF05140 ResB-like family ALE3EI_2052 PF10415 Fumarase C C-terminus ALE3EI_2052 PF00206 Lyase ALE3EI_2054 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_2054 PF00593 TonB dependent receptor ALE3EI_2055 PF03960 ArsC family ALE3EI_2057 PF00583 Acetyltransferase (GNAT) family ALE3EI_2057 PF01047 MarR family ALE3EI_2058 PF00472 RF-1 domain ALE3EI_2058 PF03462 PCRF domain ALE3EI_2061 PF01212 Beta-eliminating lyase ALE3EI_2062 PF07411 Domain of unknown function (DUF1508) ALE3EI_2063 PF02575 YbaB/EbfC DNA-binding family ALE3EI_2064 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ALE3EI_2064 PF00326 Prolyl oligopeptidase family ALE3EI_2065 PF00291 Pyridoxal-phosphate dependent enzyme ALE3EI_2065 PF00571 CBS domain ALE3EI_2066 PF00155 Aminotransferase class I and II ALE3EI_2076 PF17760 UvrA interaction domain ALE3EI_2076 PF17755 UvrA DNA-binding domain ALE3EI_2076 PF00005 ABC transporter ALE3EI_2079 PF10576 Iron-sulfur binding domain of endonuclease III ALE3EI_2079 PF00633 Helix-hairpin-helix motif ALE3EI_2079 PF00730 HhH-GPD superfamily base excision DNA repair protein ALE3EI_2080 PF00578 AhpC/TSA family ALE3EI_2082 PF00753 Metallo-beta-lactamase superfamily ALE3EI_2087 PF01979 Amidohydrolase family ALE3EI_2089 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_2089 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2089 PF08446 PAS fold ALE3EI_2089 PF00360 Phytochrome region ALE3EI_2089 PF01590 GAF domain ALE3EI_2090 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_2090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2092 PF00005 ABC transporter ALE3EI_2094 PF01625 Peptide methionine sulfoxide reductase ALE3EI_2095 PF01227 GTP cyclohydrolase I ALE3EI_2097 PF00593 TonB dependent receptor ALE3EI_2097 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_2102 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALE3EI_2102 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALE3EI_2103 PF00266 Aminotransferase class-V ALE3EI_2105 PF00037 4Fe-4S binding domain ALE3EI_2111 PF06071 Protein of unknown function (DUF933) ALE3EI_2111 PF01926 50S ribosome-binding GTPase ALE3EI_2113 PF01751 Toprim domain ALE3EI_2113 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2113 PF00986 DNA gyrase B subunit, carboxyl terminus ALE3EI_2113 PF00204 DNA gyrase B ALE3EI_2115 PF00521 DNA gyrase/topoisomerase IV, subunit A ALE3EI_2116 PF01741 Large-conductance mechanosensitive channel, MscL ALE3EI_2117 PF00072 Response regulator receiver domain ALE3EI_2117 PF09308 LuxQ, periplasmic ALE3EI_2117 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_2117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2121 PF01037 Lrp/AsnC ligand binding domain ALE3EI_2122 PF01965 DJ-1/PfpI family ALE3EI_2124 PF01761 3-dehydroquinate synthase ALE3EI_2125 PF01619 Proline dehydrogenase ALE3EI_2130 PF12833 Helix-turn-helix domain ALE3EI_2130 PF07883 Cupin domain ALE3EI_2132 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ALE3EI_2132 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ALE3EI_2135 PF17864 RuvB AAA lid domain ALE3EI_2135 PF05491 RuvB C-terminal winged helix domain ALE3EI_2135 PF05496 Holliday junction DNA helicase RuvB P-loop domain ALE3EI_2136 PF00072 Response regulator receiver domain ALE3EI_2136 PF02954 Bacterial regulatory protein, Fis family ALE3EI_2136 PF00158 Sigma-54 interaction domain ALE3EI_2137 PF01966 HD domain ALE3EI_2138 PF00132 Bacterial transferase hexapeptide (six repeats) ALE3EI_2138 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ALE3EI_2139 PF07977 FabA-like domain ALE3EI_2139 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ALE3EI_2140 PF00132 Bacterial transferase hexapeptide (six repeats) ALE3EI_2140 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ALE3EI_2141 PF08207 Elongation factor P (EF-P) KOW-like domain ALE3EI_2141 PF01132 Elongation factor P (EF-P) OB domain ALE3EI_2141 PF09285 Elongation factor P, C-terminal ALE3EI_2142 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ALE3EI_2142 PF00132 Bacterial transferase hexapeptide (six repeats) ALE3EI_2144 PF00549 CoA-ligase ALE3EI_2144 PF02629 CoA binding domain ALE3EI_2148 PF00474 Sodium:solute symporter family ALE3EI_2149 PF00318 Ribosomal protein S2 ALE3EI_2151 PF01634 ATP phosphoribosyltransferase ALE3EI_2151 PF08029 HisG, C-terminal domain ALE3EI_2152 PF00815 Histidinol dehydrogenase ALE3EI_2153 PF00155 Aminotransferase class I and II ALE3EI_2154 PF08645 Polynucleotide kinase 3 phosphatase ALE3EI_2154 PF00475 Imidazoleglycerol-phosphate dehydratase ALE3EI_2155 PF00117 Glutamine amidotransferase class-I ALE3EI_2156 PF00977 Histidine biosynthesis protein ALE3EI_2157 PF00977 Histidine biosynthesis protein ALE3EI_2158 PF01502 Phosphoribosyl-AMP cyclohydrolase ALE3EI_2158 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ALE3EI_2159 PF01544 CorA-like Mg2+ transporter protein ALE3EI_2165 PF00171 Aldehyde dehydrogenase family ALE3EI_2169 PF00924 Mechanosensitive ion channel ALE3EI_2170 PF12823 Domain of unknown function (DUF3817) ALE3EI_2171 PF12795 Mechanosensitive ion channel porin domain ALE3EI_2171 PF12794 Mechanosensitive ion channel inner membrane domain 1 ALE3EI_2171 PF00924 Mechanosensitive ion channel ALE3EI_2179 PF00691 OmpA family ALE3EI_2179 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALE3EI_2180 PF00924 Mechanosensitive ion channel ALE3EI_2180 PF05552 Conserved TM helix ALE3EI_2181 PF04539 Sigma-70 region 3 ALE3EI_2181 PF04542 Sigma-70 region 2 ALE3EI_2181 PF00140 Sigma-70 factor, region 1.2 ALE3EI_2181 PF03979 Sigma-70 factor, region 1.1 ALE3EI_2181 PF04545 Sigma-70, region 4 ALE3EI_2183 PF00246 Zinc carboxypeptidase ALE3EI_2194 PF00313 'Cold-shock' DNA-binding domain ALE3EI_2195 PF02805 Metal binding domain of Ada ALE3EI_2195 PF12833 Helix-turn-helix domain ALE3EI_2201 PF02559 CarD-like/TRCF domain ALE3EI_2201 PF00270 DEAD/DEAH box helicase ALE3EI_2201 PF17757 UvrB interaction domain ALE3EI_2201 PF03461 TRCF domain ALE3EI_2201 PF00271 Helicase conserved C-terminal domain ALE3EI_2208 PF04264 YceI-like domain ALE3EI_2210 PF00486 Transcriptional regulatory protein, C terminal ALE3EI_2210 PF00072 Response regulator receiver domain ALE3EI_2212 PF01431 Peptidase family M13 ALE3EI_2212 PF05649 Peptidase family M13 ALE3EI_2213 PF07676 WD40-like Beta Propeller Repeat ALE3EI_2213 PF04052 TolB amino-terminal domain ALE3EI_2216 PF00313 'Cold-shock' DNA-binding domain ALE3EI_2218 PF00211 Adenylate and Guanylate cyclase catalytic domain ALE3EI_2220 PF05971 RNA methyltransferase ALE3EI_2222 PF07690 Major Facilitator Superfamily ALE3EI_2223 PF03741 Integral membrane protein TerC family ALE3EI_2227 PF10672 S-adenosylmethionine-dependent methyltransferase ALE3EI_2227 PF17785 PUA-like domain ALE3EI_2228 PF03741 Integral membrane protein TerC family ALE3EI_2229 PF00550 Phosphopantetheine attachment site ALE3EI_2231 PF07977 FabA-like domain ALE3EI_2233 PF02797 Chalcone and stilbene synthases, C-terminal domain ALE3EI_2233 PF00195 Chalcone and stilbene synthases, N-terminal domain ALE3EI_2235 PF01494 FAD binding domain ALE3EI_2236 PF00691 OmpA family ALE3EI_2236 PF05736 OprF membrane domain ALE3EI_2239 PF02780 Transketolase, C-terminal domain ALE3EI_2239 PF02779 Transketolase, pyrimidine binding domain ALE3EI_2242 PF01048 Phosphorylase superfamily ALE3EI_2245 PF03167 Uracil DNA glycosylase superfamily ALE3EI_2246 PF01713 Smr domain ALE3EI_2246 PF00488 MutS domain V ALE3EI_2247 PF04134 Protein of unknown function, DUF393 ALE3EI_2250 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ALE3EI_2250 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ALE3EI_2252 PF00375 Sodium:dicarboxylate symporter family ALE3EI_2253 PF01264 Chorismate synthase ALE3EI_2255 PF13183 4Fe-4S dicluster domain ALE3EI_2255 PF01565 FAD binding domain ALE3EI_2255 PF02913 FAD linked oxidases, C-terminal domain ALE3EI_2259 PF13439 Glycosyltransferase Family 4 ALE3EI_2259 PF00534 Glycosyl transferases group 1 ALE3EI_2260 PF00933 Glycosyl hydrolase family 3 N terminal domain ALE3EI_2260 PF01915 Glycosyl hydrolase family 3 C-terminal domain ALE3EI_2262 PF02754 Cysteine-rich domain ALE3EI_2262 PF13183 4Fe-4S dicluster domain ALE3EI_2262 PF02665 Nitrate reductase gamma subunit ALE3EI_2264 PF02754 Cysteine-rich domain ALE3EI_2264 PF13183 4Fe-4S dicluster domain ALE3EI_2266 PF01520 N-acetylmuramoyl-L-alanine amidase ALE3EI_2268 PF01042 Endoribonuclease L-PSP ALE3EI_2270 PF00814 Glycoprotease family ALE3EI_2274 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALE3EI_2274 PF00588 SpoU rRNA Methylase family ALE3EI_2279 PF01679 Proteolipid membrane potential modulator ALE3EI_2285 PF05974 Domain of unknown function (DUF892) ALE3EI_2286 PF00072 Response regulator receiver domain ALE3EI_2286 PF12833 Helix-turn-helix domain ALE3EI_2286 PF07495 Y_Y_Y domain ALE3EI_2286 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2286 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_2286 PF07494 Two component regulator propeller ALE3EI_2289 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ALE3EI_2289 PF01266 FAD dependent oxidoreductase ALE3EI_2290 PF07698 7TM receptor with intracellular HD hydrolase ALE3EI_2290 PF01966 HD domain ALE3EI_2290 PF07697 7TM-HD extracellular ALE3EI_2291 PF00108 Thiolase, N-terminal domain ALE3EI_2291 PF02803 Thiolase, C-terminal domain ALE3EI_2292 PF00877 NlpC/P60 family ALE3EI_2293 PF01739 CheR methyltransferase, SAM binding domain ALE3EI_2294 PF03989 DNA gyrase C-terminal domain, beta-propeller ALE3EI_2294 PF00521 DNA gyrase/topoisomerase IV, subunit A ALE3EI_2295 PF07724 AAA domain (Cdc48 subfamily) ALE3EI_2295 PF10431 C-terminal, D2-small domain, of ClpB protein ALE3EI_2295 PF02861 Clp amino terminal domain, pathogenicity island component ALE3EI_2295 PF17871 AAA lid domain ALE3EI_2295 PF00004 ATPase family associated with various cellular activities (AAA) ALE3EI_2299 PF00221 Aromatic amino acid lyase ALE3EI_2300 PF08534 Redoxin ALE3EI_2301 PF03853 YjeF-related protein N-terminus ALE3EI_2301 PF01256 Carbohydrate kinase ALE3EI_2302 PF01571 Aminomethyltransferase folate-binding domain ALE3EI_2302 PF08669 Glycine cleavage T-protein C-terminal barrel domain ALE3EI_2304 PF01329 Pterin 4 alpha carbinolamine dehydratase ALE3EI_2305 PF03572 Peptidase family S41 ALE3EI_2305 PF11818 C-terminal domain of tail specific protease (DUF3340) ALE3EI_2305 PF17804 Tail specific protease N-terminal domain ALE3EI_2305 PF00595 PDZ domain ALE3EI_2306 PF01709 Transcriptional regulator ALE3EI_2309 PF00465 Iron-containing alcohol dehydrogenase ALE3EI_2311 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain ALE3EI_2311 PF14490 Helix-hairpin-helix containing domain ALE3EI_2311 PF13538 UvrD-like helicase C-terminal domain ALE3EI_2317 PF12169 DNA polymerase III subunits gamma and tau domain III ALE3EI_2320 PF02541 Ppx/GppA phosphatase family ALE3EI_2321 PF02503 Polyphosphate kinase middle domain ALE3EI_2321 PF13090 Polyphosphate kinase C-terminal domain 2 ALE3EI_2321 PF17941 Polyphosphate kinase C-terminal domain 1 ALE3EI_2321 PF13089 Polyphosphate kinase N-terminal domain ALE3EI_2323 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ALE3EI_2323 PF01243 Pyridoxamine 5'-phosphate oxidase ALE3EI_2325 PF12706 Beta-lactamase superfamily domain ALE3EI_2327 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALE3EI_2327 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALE3EI_2328 PF00156 Phosphoribosyl transferase domain ALE3EI_2329 PF00575 S1 RNA binding domain ALE3EI_2331 PF06736 Protein of unknown function (DUF1211) ALE3EI_2333 PF02224 Cytidylate kinase ALE3EI_2335 PF02190 ATP-dependent protease La (LON) substrate-binding domain ALE3EI_2335 PF00004 ATPase family associated with various cellular activities (AAA) ALE3EI_2335 PF05362 Lon protease (S16) C-terminal proteolytic domain ALE3EI_2336 PF08281 Sigma-70, region 4 ALE3EI_2336 PF04542 Sigma-70 region 2 ALE3EI_2341 PF11700 Vacuole effluxer Atg22 like ALE3EI_2345 PF01641 SelR domain ALE3EI_2346 PF01641 SelR domain ALE3EI_2347 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALE3EI_2347 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALE3EI_2348 PF01220 Dehydroquinase class II ALE3EI_2353 PF02899 Phage integrase, N-terminal SAM-like domain ALE3EI_2353 PF00589 Phage integrase family ALE3EI_2354 PF00248 Aldo/keto reductase family ALE3EI_2355 PF01966 HD domain ALE3EI_2355 PF00013 KH domain ALE3EI_2355 PF12072 Domain of unknown function (DUF3552) ALE3EI_2358 PF01551 Peptidase family M23 ALE3EI_2358 PF08460 Bacterial SH3 domain ALE3EI_2360 PF00266 Aminotransferase class-V ALE3EI_2366 PF00202 Aminotransferase class-III ALE3EI_2367 PF01938 TRAM domain ALE3EI_2367 PF05958 tRNA (Uracil-5-)-methyltransferase ALE3EI_2370 PF10672 S-adenosylmethionine-dependent methyltransferase ALE3EI_2370 PF02926 THUMP domain ALE3EI_2370 PF01170 Putative RNA methylase family UPF0020 ALE3EI_2373 PF03006 Haemolysin-III related ALE3EI_2378 PF05343 M42 glutamyl aminopeptidase ALE3EI_2381 PF03062 MBOAT, membrane-bound O-acyltransferase family ALE3EI_2383 PF01235 Sodium:alanine symporter family ALE3EI_2385 PF01259 SAICAR synthetase ALE3EI_2386 PF02562 PhoH-like protein ALE3EI_2391 PF00712 DNA polymerase III beta subunit, N-terminal domain ALE3EI_2391 PF02767 DNA polymerase III beta subunit, central domain ALE3EI_2391 PF02768 DNA polymerase III beta subunit, C-terminal domain ALE3EI_2392 PF12697 Alpha/beta hydrolase family ALE3EI_2393 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_2393 PF09308 LuxQ, periplasmic ALE3EI_2393 PF00072 Response regulator receiver domain ALE3EI_2393 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2394 PF03109 ABC1 family ALE3EI_2397 PF10396 GTP-binding protein TrmE N-terminus ALE3EI_2397 PF12631 MnmE helical domain ALE3EI_2397 PF01926 50S ribosome-binding GTPase ALE3EI_2401 PF02719 Polysaccharide biosynthesis protein ALE3EI_2402 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALE3EI_2404 PF02397 Bacterial sugar transferase ALE3EI_2405 PF00534 Glycosyl transferases group 1 ALE3EI_2405 PF13477 Glycosyl transferase 4-like ALE3EI_2406 PF00534 Glycosyl transferases group 1 ALE3EI_2406 PF13579 Glycosyl transferase 4-like domain ALE3EI_2409 PF01370 NAD dependent epimerase/dehydratase family ALE3EI_2411 PF13537 Glutamine amidotransferase domain ALE3EI_2411 PF00733 Asparagine synthase ALE3EI_2412 PF00132 Bacterial transferase hexapeptide (six repeats) ALE3EI_2412 PF12464 Maltose acetyltransferase ALE3EI_2413 PF01943 Polysaccharide biosynthesis protein ALE3EI_2413 PF14667 Polysaccharide biosynthesis C-terminal domain ALE3EI_2415 PF00535 Glycosyl transferase family 2 ALE3EI_2418 PF01943 Polysaccharide biosynthesis protein ALE3EI_2419 PF00009 Elongation factor Tu GTP binding domain ALE3EI_2420 PF01507 Phosphoadenosine phosphosulfate reductase family ALE3EI_2423 PF00459 Inositol monophosphatase family ALE3EI_2425 PF00210 Ferritin-like domain ALE3EI_2432 PF00578 AhpC/TSA family ALE3EI_2434 PF01694 Rhomboid family ALE3EI_2436 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALE3EI_2436 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALE3EI_2436 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALE3EI_2436 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALE3EI_2440 PF00005 ABC transporter ALE3EI_2440 PF17755 UvrA DNA-binding domain ALE3EI_2440 PF17760 UvrA interaction domain ALE3EI_2441 PF03641 Possible lysine decarboxylase ALE3EI_2444 PF02780 Transketolase, C-terminal domain ALE3EI_2444 PF02779 Transketolase, pyrimidine binding domain ALE3EI_2446 PF13537 Glutamine amidotransferase domain ALE3EI_2446 PF00733 Asparagine synthase ALE3EI_2448 PF00072 Response regulator receiver domain ALE3EI_2448 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_2449 PF00378 Enoyl-CoA hydratase/isomerase ALE3EI_2453 PF17783 CvfB-like winged helix domain ALE3EI_2453 PF13509 S1 domain ALE3EI_2455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALE3EI_2455 PF16582 Middle domain of thiamine pyrophosphate ALE3EI_2455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALE3EI_2456 PF00425 chorismate binding enzyme ALE3EI_2457 PF03061 Thioesterase superfamily ALE3EI_2460 PF01758 Sodium Bile acid symporter family ALE3EI_2470 PF00144 Beta-lactamase ALE3EI_2471 PF00012 Hsp70 protein ALE3EI_2472 PF02811 PHP domain ALE3EI_2472 PF14579 Helix-hairpin-helix motif ALE3EI_2472 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALE3EI_2472 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALE3EI_2473 PF11798 IMS family HHH motif ALE3EI_2473 PF00817 impB/mucB/samB family ALE3EI_2473 PF11799 impB/mucB/samB family C-terminal domain ALE3EI_2474 PF02586 SOS response associated peptidase (SRAP) ALE3EI_2475 PF03315 Serine dehydratase beta chain ALE3EI_2475 PF03313 Serine dehydratase alpha chain ALE3EI_2477 PF02548 Ketopantoate hydroxymethyltransferase ALE3EI_2478 PF01479 S4 domain ALE3EI_2478 PF00849 RNA pseudouridylate synthase ALE3EI_2479 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_2479 PF00072 Response regulator receiver domain ALE3EI_2480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2480 PF07730 Histidine kinase ALE3EI_2485 PF02682 Carboxyltransferase domain, subdomain C and D ALE3EI_2486 PF03746 LamB/YcsF family ALE3EI_2487 PF01566 Natural resistance-associated macrophage protein ALE3EI_2488 PF00675 Insulinase (Peptidase family M16) ALE3EI_2488 PF05193 Peptidase M16 inactive domain ALE3EI_2489 PF13335 Magnesium chelatase, subunit ChlI C-terminal ALE3EI_2489 PF01078 Magnesium chelatase, subunit ChlI ALE3EI_2490 PF00196 Bacterial regulatory proteins, luxR family ALE3EI_2490 PF00072 Response regulator receiver domain ALE3EI_2491 PF07730 Histidine kinase ALE3EI_2491 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2494 PF00342 Phosphoglucose isomerase ALE3EI_2496 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALE3EI_2496 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALE3EI_2497 PF00365 Phosphofructokinase ALE3EI_2499 PF02683 Cytochrome C biogenesis protein transmembrane region ALE3EI_2499 PF11412 Disulphide bond corrector protein DsbC ALE3EI_2500 PF11734 TilS substrate C-terminal domain ALE3EI_2500 PF01171 PP-loop family ALE3EI_2501 PF00425 chorismate binding enzyme ALE3EI_2501 PF04715 Anthranilate synthase component I, N terminal region ALE3EI_2502 PF03358 NADPH-dependent FMN reductase ALE3EI_2504 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALE3EI_2504 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALE3EI_2506 PF01037 Lrp/AsnC ligand binding domain ALE3EI_2507 PF01053 Cys/Met metabolism PLP-dependent enzyme ALE3EI_2512 PF03553 Na+/H+ antiporter family ALE3EI_2513 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALE3EI_2513 PF00578 AhpC/TSA family ALE3EI_2514 PF08534 Redoxin ALE3EI_2517 PF01580 FtsK/SpoIIIE family ALE3EI_2517 PF09397 Ftsk gamma domain ALE3EI_2517 PF17854 FtsK alpha domain ALE3EI_2517 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ALE3EI_2520 PF00925 GTP cyclohydrolase II ALE3EI_2520 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ALE3EI_2523 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2523 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_2523 PF12833 Helix-turn-helix domain ALE3EI_2523 PF07494 Two component regulator propeller ALE3EI_2523 PF00072 Response regulator receiver domain ALE3EI_2523 PF07495 Y_Y_Y domain ALE3EI_2524 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALE3EI_2525 PF00881 Nitroreductase family ALE3EI_2531 PF00582 Universal stress protein family ALE3EI_2533 PF00085 Thioredoxin ALE3EI_2537 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2537 PF18698 Histidine kinase sensor domain ALE3EI_2537 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_2537 PF00672 HAMP domain ALE3EI_2538 PF00486 Transcriptional regulatory protein, C terminal ALE3EI_2538 PF00072 Response regulator receiver domain ALE3EI_2539 PF00582 Universal stress protein family ALE3EI_2543 PF10996 Beta-Casp domain ALE3EI_2543 PF00753 Metallo-beta-lactamase superfamily ALE3EI_2543 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain ALE3EI_2551 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALE3EI_2551 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALE3EI_2552 PF00582 Universal stress protein family ALE3EI_2554 PF02469 Fasciclin domain ALE3EI_2555 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALE3EI_2555 PF18793 Nitrous oxide reductase propeller repeat 2 ALE3EI_2555 PF18764 Nitrous oxide reductase propeller repeat ALE3EI_2560 PF00005 ABC transporter ALE3EI_2565 PF00873 AcrB/AcrD/AcrF family ALE3EI_2569 PF00403 Heavy-metal-associated domain ALE3EI_2571 PF00873 AcrB/AcrD/AcrF family ALE3EI_2574 PF00394 Multicopper oxidase ALE3EI_2574 PF07731 Multicopper oxidase ALE3EI_2574 PF07732 Multicopper oxidase ALE3EI_2578 PF03773 Predicted permease ALE3EI_2583 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALE3EI_2596 PF00072 Response regulator receiver domain ALE3EI_2596 PF08448 PAS fold ALE3EI_2596 PF13188 PAS domain ALE3EI_2596 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_2596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2597 PF00158 Sigma-54 interaction domain ALE3EI_2597 PF00072 Response regulator receiver domain ALE3EI_2597 PF02954 Bacterial regulatory protein, Fis family ALE3EI_2598 PF04542 Sigma-70 region 2 ALE3EI_2598 PF08281 Sigma-70, region 4 ALE3EI_2602 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALE3EI_2602 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALE3EI_2603 PF03449 Transcription elongation factor, N-terminal ALE3EI_2603 PF01272 Transcription elongation factor, GreA/GreB, C-term ALE3EI_2607 PF00581 Rhodanese-like domain ALE3EI_2607 PF00753 Metallo-beta-lactamase superfamily ALE3EI_2610 PF02585 GlcNAc-PI de-N-acetylase ALE3EI_2611 PF01053 Cys/Met metabolism PLP-dependent enzyme ALE3EI_2612 PF01979 Amidohydrolase family ALE3EI_2613 PF00491 Arginase family ALE3EI_2614 PF07837 Formiminotransferase domain, N-terminal subdomain ALE3EI_2614 PF02971 Formiminotransferase domain ALE3EI_2618 PF00593 TonB dependent receptor ALE3EI_2618 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_2621 PF07676 WD40-like Beta Propeller Repeat ALE3EI_2621 PF00326 Prolyl oligopeptidase family ALE3EI_2623 PF12848 ABC transporter ALE3EI_2623 PF00005 ABC transporter ALE3EI_2625 PF01039 Carboxyl transferase domain ALE3EI_2629 PF00593 TonB dependent receptor ALE3EI_2629 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_2630 PF00501 AMP-binding enzyme ALE3EI_2630 PF13193 AMP-binding enzyme C-terminal domain ALE3EI_2632 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain ALE3EI_2632 PF13378 Enolase C-terminal domain-like ALE3EI_2634 PF01040 UbiA prenyltransferase family ALE3EI_2639 PF00535 Glycosyl transferase family 2 ALE3EI_2639 PF00534 Glycosyl transferases group 1 ALE3EI_2643 PF01300 Telomere recombination ALE3EI_2645 PF00580 UvrD/REP helicase N-terminal domain ALE3EI_2645 PF13361 UvrD-like helicase C-terminal domain ALE3EI_2646 PF07687 Peptidase dimerisation domain ALE3EI_2646 PF01546 Peptidase family M20/M25/M40 ALE3EI_2647 PF01645 Conserved region in glutamate synthase ALE3EI_2648 PF00072 Response regulator receiver domain ALE3EI_2648 PF04397 LytTr DNA-binding domain ALE3EI_2649 PF06580 Histidine kinase ALE3EI_2649 PF07694 5TMR of 5TMR-LYT ALE3EI_2649 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2653 PF01433 Peptidase family M1 domain ALE3EI_2653 PF11838 ERAP1-like C-terminal domain ALE3EI_2654 PF00270 DEAD/DEAH box helicase ALE3EI_2654 PF00271 Helicase conserved C-terminal domain ALE3EI_2654 PF17191 RecG wedge domain ALE3EI_2657 PF03483 B3/4 domain ALE3EI_2657 PF03147 Ferredoxin-fold anticodon binding domain ALE3EI_2657 PF01588 Putative tRNA binding domain ALE3EI_2657 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ALE3EI_2657 PF03484 tRNA synthetase B5 domain ALE3EI_2661 PF00005 ABC transporter ALE3EI_2661 PF12848 ABC transporter ALE3EI_2663 PF00923 Transaldolase/Fructose-6-phosphate aldolase ALE3EI_2664 PF00106 short chain dehydrogenase ALE3EI_2667 PF00313 'Cold-shock' DNA-binding domain ALE3EI_2669 PF03150 Di-haem cytochrome c peroxidase ALE3EI_2669 PF00034 Cytochrome c ALE3EI_2672 PF00464 Serine hydroxymethyltransferase ALE3EI_2676 PF17871 AAA lid domain ALE3EI_2676 PF10431 C-terminal, D2-small domain, of ClpB protein ALE3EI_2676 PF02861 Clp amino terminal domain, pathogenicity island component ALE3EI_2676 PF07724 AAA domain (Cdc48 subfamily) ALE3EI_2676 PF00004 ATPase family associated with various cellular activities (AAA) ALE3EI_2677 PF00440 Bacterial regulatory proteins, tetR family ALE3EI_2677 PF08361 MAATS-type transcriptional repressor, C-terminal region ALE3EI_2684 PF01668 SmpB protein ALE3EI_2685 PF00593 TonB dependent receptor ALE3EI_2685 PF07715 TonB-dependent Receptor Plug Domain ALE3EI_2689 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ALE3EI_2689 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ALE3EI_2690 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALE3EI_2690 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALE3EI_2692 PF01168 Alanine racemase, N-terminal domain ALE3EI_2693 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALE3EI_2693 PF11490 DNA polymerase III polC-type N-terminus II ALE3EI_2693 PF14579 Helix-hairpin-helix motif ALE3EI_2693 PF02811 PHP domain ALE3EI_2693 PF00929 Exonuclease ALE3EI_2693 PF01336 OB-fold nucleic acid binding domain ALE3EI_2693 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALE3EI_2694 PF00027 Cyclic nucleotide-binding domain ALE3EI_2694 PF00520 Ion transport protein ALE3EI_2696 PF00072 Response regulator receiver domain ALE3EI_2696 PF00486 Transcriptional regulatory protein, C terminal ALE3EI_2697 PF00512 His Kinase A (phospho-acceptor) domain ALE3EI_2697 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALE3EI_2698 PF01121 Dephospho-CoA kinase ALE3EI_2700 PF00535 Glycosyl transferase family 2 ALE3EI_2704 PF02463 RecF/RecN/SMC N terminal domain ALE3EI_2706 PF04127 DNA / pantothenate metabolism flavoprotein ALE3EI_2706 PF02441 Flavoprotein ALE3EI_2709 PF00701 Dihydrodipicolinate synthetase family ALE3EI_2711 PF01653 NAD-dependent DNA ligase adenylation domain ALE3EI_2711 PF03120 NAD-dependent DNA ligase OB-fold domain ALE3EI_2711 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ALE3EI_2711 PF12826 Helix-hairpin-helix motif ALE3EI_2711 PF00533 BRCA1 C Terminus (BRCT) domain ALE3EI_2712 PF03641 Possible lysine decarboxylase ALE3EI_2713 PF17827 PrmC N-terminal domain ALE3EI_2713 PF05175 Methyltransferase small domain ALE3EI_2715 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALE3EI_2715 PF01872 RibD C-terminal domain ALE3EI_2717 PF01205 Uncharacterized protein family UPF0029 ALE3EI_2717 PF09186 Domain of unknown function (DUF1949)