locus-tag class description Ami103574_00005 PF00324 Amino acid permease Ami103574_00015 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ami103574_00015 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Ami103574_00020 PF00158 Sigma-54 interaction domain Ami103574_00020 PF00072 Response regulator receiver domain Ami103574_00020 PF02954 Bacterial regulatory protein, Fis family Ami103574_00035 PF07690 Major Facilitator Superfamily Ami103574_00115 PF00772 DnaB-like helicase N terminal domain Ami103574_00115 PF03796 DnaB-like helicase C terminal domain Ami103574_00140 PF00589 Phage integrase family Ami103574_00140 PF14659 Phage integrase, N-terminal SAM-like domain Ami103574_00145 PF00005 ABC transporter Ami103574_00145 PF09383 NIL domain Ami103574_00160 PF00392 Bacterial regulatory proteins, gntR family Ami103574_00165 PF00005 ABC transporter Ami103574_00175 PF00491 Arginase family Ami103574_00180 PF00324 Amino acid permease Ami103574_00185 PF13426 PAS domain Ami103574_00185 PF00158 Sigma-54 interaction domain Ami103574_00185 PF02954 Bacterial regulatory protein, Fis family Ami103574_00255 PF00395 S-layer homology domain Ami103574_00260 PF00037 4Fe-4S binding domain Ami103574_00260 PF13187 4Fe-4S dicluster domain Ami103574_00260 PF04060 Putative Fe-S cluster Ami103574_00265 PF02508 Rnf-Nqr subunit, membrane protein Ami103574_00270 PF02508 Rnf-Nqr subunit, membrane protein Ami103574_00275 PF04205 FMN-binding domain Ami103574_00280 PF03116 NQR2, RnfD, RnfE family Ami103574_00285 PF13237 4Fe-4S dicluster domain Ami103574_00285 PF13375 RnfC Barrel sandwich hybrid domain Ami103574_00285 PF10531 SLBB domain Ami103574_00285 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Ami103574_00290 PF03466 LysR substrate binding domain Ami103574_00290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_00295 PF00403 Heavy-metal-associated domain Ami103574_00300 PF01022 Bacterial regulatory protein, arsR family Ami103574_00305 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Ami103574_00305 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Ami103574_00310 PF04607 Region found in RelA / SpoT proteins Ami103574_00325 PF13533 Biotin-lipoyl like Ami103574_00345 PF02403 Seryl-tRNA synthetase N-terminal domain Ami103574_00345 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Ami103574_00355 PF03699 Uncharacterised protein family (UPF0182) Ami103574_00395 PF02954 Bacterial regulatory protein, Fis family Ami103574_00395 PF00158 Sigma-54 interaction domain Ami103574_00395 PF00989 PAS fold Ami103574_00400 PF00871 Acetokinase family Ami103574_00405 PF01515 Phosphate acetyl/butaryl transferase Ami103574_00410 PF05853 beta-keto acid cleavage enzyme Ami103574_00415 PF01144 Coenzyme A transferase Ami103574_00420 PF01144 Coenzyme A transferase Ami103574_00430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Ami103574_00430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ami103574_00435 PF01966 HD domain Ami103574_00440 PF00589 Phage integrase family Ami103574_00440 PF14659 Phage integrase, N-terminal SAM-like domain Ami103574_00445 PF07690 Major Facilitator Superfamily Ami103574_00450 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_00455 PF00497 Bacterial extracellular solute-binding proteins, family 3 Ami103574_00460 PF01053 Cys/Met metabolism PLP-dependent enzyme Ami103574_00465 PF00005 ABC transporter Ami103574_00475 PF00491 Arginase family Ami103574_00480 PF06445 GyrI-like small molecule binding domain Ami103574_00480 PF13411 MerR HTH family regulatory protein Ami103574_00485 PF04474 Protein of unknown function (DUF554) Ami103574_00490 PF00266 Aminotransferase class-V Ami103574_00500 PF03577 Peptidase family C69 Ami103574_00515 PF00291 Pyridoxal-phosphate dependent enzyme Ami103574_00520 PF16916 Dimerisation domain of Zinc Transporter Ami103574_00520 PF01545 Cation efflux family Ami103574_00525 PF00301 Rubredoxin Ami103574_00530 PF00753 Metallo-beta-lactamase superfamily Ami103574_00530 PF00258 Flavodoxin Ami103574_00535 PF01261 Xylose isomerase-like TIM barrel Ami103574_00550 PF02203 Tar ligand binding domain homologue Ami103574_00550 PF00672 HAMP domain Ami103574_00550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_00555 PF01541 GIY-YIG catalytic domain Ami103574_00560 PF01584 CheW-like domain Ami103574_00560 PF00072 Response regulator receiver domain Ami103574_00565 PF01168 Alanine racemase, N-terminal domain Ami103574_00575 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Ami103574_00575 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase Ami103574_00575 PF02310 B12 binding domain Ami103574_00580 PF16552 D-ornithine 4,5-aminomutase alpha-subunit Ami103574_00585 PF00291 Pyridoxal-phosphate dependent enzyme Ami103574_00600 PF13426 PAS domain Ami103574_00600 PF02954 Bacterial regulatory protein, Fis family Ami103574_00600 PF00158 Sigma-54 interaction domain Ami103574_00605 PF01022 Bacterial regulatory protein, arsR family Ami103574_00625 PF00563 EAL domain Ami103574_00625 PF12792 CSS motif domain associated with EAL Ami103574_00635 PF13520 Amino acid permease Ami103574_00640 PF02590 Predicted SPOUT methyltransferase Ami103574_00665 PF00075 RNase H Ami103574_00670 PF00266 Aminotransferase class-V Ami103574_00675 PF00893 Small Multidrug Resistance protein Ami103574_00700 PF00392 Bacterial regulatory proteins, gntR family Ami103574_00710 PF12704 MacB-like periplasmic core domain Ami103574_00710 PF02687 FtsX-like permease family Ami103574_00715 PF00005 ABC transporter Ami103574_00720 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Ami103574_00730 PF17762 HTH domain found in ParB protein Ami103574_00730 PF02195 ParB-like nuclease domain Ami103574_00735 PF13614 AAA domain Ami103574_00740 PF17762 HTH domain found in ParB protein Ami103574_00740 PF02195 ParB-like nuclease domain Ami103574_00745 PF02527 rRNA small subunit methyltransferase G Ami103574_00750 PF13932 GidA associated domain Ami103574_00750 PF01134 Glucose inhibited division protein A Ami103574_00755 PF10396 GTP-binding protein TrmE N-terminus Ami103574_00755 PF12631 MnmE helical domain Ami103574_00755 PF01926 50S ribosome-binding GTPase Ami103574_00760 PF14804 Jag N-terminus Ami103574_00760 PF01424 R3H domain Ami103574_00765 PF14849 YidC periplasmic domain Ami103574_00765 PF02096 60Kd inner membrane protein Ami103574_00770 PF01809 Putative membrane protein insertion efficiency factor Ami103574_00775 PF00825 Ribonuclease P Ami103574_00780 PF00468 Ribosomal protein L34 Ami103574_00785 PF08299 Bacterial dnaA protein helix-turn-helix Ami103574_00785 PF11638 DnaA N-terminal domain Ami103574_00785 PF00308 Bacterial dnaA protein Ami103574_00790 PF02768 DNA polymerase III beta subunit, C-terminal domain Ami103574_00790 PF02767 DNA polymerase III beta subunit, central domain Ami103574_00790 PF00712 DNA polymerase III beta subunit, N-terminal domain Ami103574_00795 PF02463 RecF/RecN/SMC N terminal domain Ami103574_00800 PF00204 DNA gyrase B Ami103574_00800 PF00986 DNA gyrase B subunit, carboxyl terminus Ami103574_00800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_00800 PF01751 Toprim domain Ami103574_00805 PF03989 DNA gyrase C-terminal domain, beta-propeller Ami103574_00805 PF00521 DNA gyrase/topoisomerase IV, subunit A Ami103574_00810 PF13581 Histidine kinase-like ATPase domain Ami103574_00815 PF04545 Sigma-70, region 4 Ami103574_00815 PF04539 Sigma-70 region 3 Ami103574_00815 PF04542 Sigma-70 region 2 Ami103574_00820 PF00579 tRNA synthetases class I (W and Y) Ami103574_00825 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Ami103574_00825 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Ami103574_00835 PF01569 PAP2 superfamily Ami103574_00840 PF00293 NUDIX domain Ami103574_00845 PF02203 Tar ligand binding domain homologue Ami103574_00845 PF00672 HAMP domain Ami103574_00845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_00850 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal Ami103574_00850 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal Ami103574_00855 PF02803 Thiolase, C-terminal domain Ami103574_00855 PF00108 Thiolase, N-terminal domain Ami103574_00860 PF00465 Iron-containing alcohol dehydrogenase Ami103574_00875 PF05853 beta-keto acid cleavage enzyme Ami103574_00890 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Ami103574_00890 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ami103574_00900 PF01969 Protein of unknown function DUF111 Ami103574_00905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_00905 PF03466 LysR substrate binding domain Ami103574_00910 PF07690 Major Facilitator Superfamily Ami103574_00920 PF02540 NAD synthase Ami103574_00925 PF01022 Bacterial regulatory protein, arsR family Ami103574_00935 PF00403 Heavy-metal-associated domain Ami103574_00940 PF02669 K+-transporting ATPase, c chain Ami103574_00950 PF03814 Potassium-transporting ATPase A subunit Ami103574_00960 PF02702 Osmosensitive K+ channel His kinase sensor domain Ami103574_00960 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_00960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_00960 PF13493 Domain of unknown function (DUF4118) Ami103574_00965 PF00486 Transcriptional regulatory protein, C terminal Ami103574_00965 PF00072 Response regulator receiver domain Ami103574_00975 PF00266 Aminotransferase class-V Ami103574_00980 PF04055 Radical SAM superfamily Ami103574_00980 PF02579 Dinitrogenase iron-molybdenum cofactor Ami103574_00985 PF02579 Dinitrogenase iron-molybdenum cofactor Ami103574_00985 PF04055 Radical SAM superfamily Ami103574_00990 PF09084 NMT1/THI5 like Ami103574_00995 PF00005 ABC transporter Ami103574_01000 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_01005 PF00148 Nitrogenase component 1 type Oxidoreductase Ami103574_01010 PF00148 Nitrogenase component 1 type Oxidoreductase Ami103574_01020 PF04072 Leucine carboxyl methyltransferase Ami103574_01025 PF01053 Cys/Met metabolism PLP-dependent enzyme Ami103574_01030 PF00291 Pyridoxal-phosphate dependent enzyme Ami103574_01035 PF04397 LytTr DNA-binding domain Ami103574_01035 PF00072 Response regulator receiver domain Ami103574_01070 PF00255 Glutathione peroxidase Ami103574_01075 PF01047 MarR family Ami103574_01090 PF00596 Class II Aldolase and Adducin N-terminal domain Ami103574_01095 PF00294 pfkB family carbohydrate kinase Ami103574_01100 PF01250 Ribosomal protein S6 Ami103574_01105 PF00436 Single-strand binding protein family Ami103574_01110 PF01084 Ribosomal protein S18 Ami103574_01115 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) Ami103574_01115 PF07581 The GLUG motif Ami103574_01125 PF02541 Ppx/GppA phosphatase family Ami103574_01130 PF01966 HD domain Ami103574_01135 PF02203 Tar ligand binding domain homologue Ami103574_01135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_01135 PF00672 HAMP domain Ami103574_01140 PF00589 Phage integrase family Ami103574_01140 PF14659 Phage integrase, N-terminal SAM-like domain Ami103574_01150 PF02272 DHHA1 domain Ami103574_01150 PF01368 DHH family Ami103574_01155 PF03948 Ribosomal protein L9, C-terminal domain Ami103574_01155 PF01281 Ribosomal protein L9, N-terminal domain Ami103574_01160 PF00772 DnaB-like helicase N terminal domain Ami103574_01160 PF03796 DnaB-like helicase C terminal domain Ami103574_01170 PF01476 LysM domain Ami103574_01170 PF01551 Peptidase family M23 Ami103574_01170 PF08525 Opacity-associated protein A N-terminal motif Ami103574_01175 PF00485 Phosphoribulokinase / Uridine kinase family Ami103574_01180 PF01613 Flavin reductase like domain Ami103574_01180 PF00301 Rubredoxin Ami103574_01185 PF02915 Rubrerythrin Ami103574_01205 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Ami103574_01210 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_01220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Ami103574_01225 PF00005 ABC transporter Ami103574_01225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Ami103574_01230 PF00005 ABC transporter Ami103574_01230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Ami103574_01235 PF01554 MatE Ami103574_01245 PF00085 Thioredoxin Ami103574_01255 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Ami103574_01255 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Ami103574_01255 PF13187 4Fe-4S dicluster domain Ami103574_01270 PF00899 ThiF family Ami103574_01275 PF01053 Cys/Met metabolism PLP-dependent enzyme Ami103574_01280 PF00072 Response regulator receiver domain Ami103574_01280 PF12833 Helix-turn-helix domain Ami103574_01285 PF00291 Pyridoxal-phosphate dependent enzyme Ami103574_01290 PF09084 NMT1/THI5 like Ami103574_01295 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_01300 PF00005 ABC transporter Ami103574_01305 PF02901 Pyruvate formate lyase-like Ami103574_01305 PF01228 Glycine radical Ami103574_01310 PF04055 Radical SAM superfamily Ami103574_01310 PF13187 4Fe-4S dicluster domain Ami103574_01315 PF00082 Subtilase family Ami103574_01320 PF00486 Transcriptional regulatory protein, C terminal Ami103574_01320 PF00072 Response regulator receiver domain Ami103574_01325 PF13426 PAS domain Ami103574_01325 PF00672 HAMP domain Ami103574_01325 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_01325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_01340 PF04977 Septum formation initiator Ami103574_01345 PF13331 Domain of unknown function (DUF4093) Ami103574_01345 PF01751 Toprim domain Ami103574_01350 PF00398 Ribosomal RNA adenine dimethylase Ami103574_01360 PF13302 Acetyltransferase (GNAT) domain Ami103574_01380 PF04073 Aminoacyl-tRNA editing domain Ami103574_01385 PF01042 Endoribonuclease L-PSP Ami103574_01390 PF01202 Shikimate kinase Ami103574_01400 PF01487 Type I 3-dehydroquinase Ami103574_01405 PF08501 Shikimate dehydrogenase substrate binding domain Ami103574_01410 PF00800 Prephenate dehydratase Ami103574_01410 PF01817 Chorismate mutase type II Ami103574_01415 PF01264 Chorismate synthase Ami103574_01420 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Ami103574_01425 PF01761 3-dehydroquinate synthase Ami103574_01430 PF02153 Prephenate dehydrogenase Ami103574_01435 PF18152 DAHP synthase ferredoxin-like domain Ami103574_01435 PF00793 DAHP synthetase I family Ami103574_01440 PF00563 EAL domain Ami103574_01440 PF13426 PAS domain Ami103574_01440 PF08448 PAS fold Ami103574_01440 PF08447 PAS fold Ami103574_01440 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_01440 PF05231 MASE1 Ami103574_01450 PF00330 Aconitase family (aconitate hydratase) Ami103574_01455 PF00694 Aconitase C-terminal domain Ami103574_01460 PF00330 Aconitase family (aconitate hydratase) Ami103574_01465 PF00694 Aconitase C-terminal domain Ami103574_01470 PF00180 Isocitrate/isopropylmalate dehydrogenase Ami103574_01475 PF00682 HMGL-like Ami103574_01475 PF08502 LeuA allosteric (dimerisation) domain Ami103574_01480 PF00205 Thiamine pyrophosphate enzyme, central domain Ami103574_01480 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Ami103574_01480 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ami103574_01485 PF10369 Small subunit of acetolactate synthase Ami103574_01490 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Ami103574_01490 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Ami103574_01495 PF00920 Dehydratase family Ami103574_01530 PF13291 ACT domain Ami103574_01530 PF00291 Pyridoxal-phosphate dependent enzyme Ami103574_01535 PF01209 ubiE/COQ5 methyltransferase family Ami103574_01540 PF00005 ABC transporter Ami103574_01540 PF00664 ABC transporter transmembrane region Ami103574_01545 PF00664 ABC transporter transmembrane region Ami103574_01545 PF00005 ABC transporter Ami103574_01550 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_01560 PF00005 ABC transporter Ami103574_01560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Ami103574_01565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Ami103574_01565 PF00005 ABC transporter Ami103574_01570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Ami103574_01575 PF00221 Aromatic amino acid lyase Ami103574_01580 PF01175 Urocanase Rossmann-like domain Ami103574_01580 PF17391 Urocanase N-terminal domain Ami103574_01580 PF17392 Urocanase C-terminal domain Ami103574_01585 PF01979 Amidohydrolase family Ami103574_01595 PF07837 Formiminotransferase domain, N-terminal subdomain Ami103574_01595 PF02971 Formiminotransferase domain Ami103574_01605 PF01168 Alanine racemase, N-terminal domain Ami103574_01605 PF00842 Alanine racemase, C-terminal domain Ami103574_01610 PF07969 Amidohydrolase family Ami103574_01620 PF05525 Branched-chain amino acid transport protein Ami103574_01625 PF00860 Permease family Ami103574_01650 PF02074 Carboxypeptidase Taq (M32) metallopeptidase Ami103574_01655 PF07690 Major Facilitator Superfamily Ami103574_01660 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Ami103574_01660 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain Ami103574_01660 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal Ami103574_01665 PF10397 Adenylosuccinate lyase C-terminus Ami103574_01665 PF00206 Lyase Ami103574_01670 PF00709 Adenylosuccinate synthetase Ami103574_01680 PF04542 Sigma-70 region 2 Ami103574_01680 PF08281 Sigma-70, region 4 Ami103574_01695 PF12704 MacB-like periplasmic core domain Ami103574_01695 PF02687 FtsX-like permease family Ami103574_01695 PF00005 ABC transporter Ami103574_01700 PF00005 ABC transporter Ami103574_01700 PF12704 MacB-like periplasmic core domain Ami103574_01700 PF02687 FtsX-like permease family Ami103574_01705 PF00963 Cohesin domain Ami103574_01705 PF00395 S-layer homology domain Ami103574_01710 PF01381 Helix-turn-helix Ami103574_01760 PF00672 HAMP domain Ami103574_01760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_01760 PF02203 Tar ligand binding domain homologue Ami103574_01770 PF02525 Flavodoxin-like fold Ami103574_01780 PF00155 Aminotransferase class I and II Ami103574_01805 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami103574_01805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Ami103574_01810 PF01979 Amidohydrolase family Ami103574_01815 PF14437 MafB19-like deaminase Ami103574_01825 PF00288 GHMP kinases N terminal domain Ami103574_01825 PF08544 GHMP kinases C terminal Ami103574_01830 PF00392 Bacterial regulatory proteins, gntR family Ami103574_01830 PF07729 FCD domain Ami103574_01835 PF04509 CheC-like family Ami103574_01835 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Ami103574_01850 PF09551 Stage II sporulation protein R (spore_II_R) Ami103574_01855 PF13180 PDZ domain Ami103574_01860 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Ami103574_01860 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Ami103574_01860 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Ami103574_01860 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Ami103574_01865 PF01430 Hsp33 protein Ami103574_01870 PF01820 D-ala D-ala ligase N-terminus Ami103574_01870 PF07478 D-ala D-ala ligase C-terminus Ami103574_01880 PF03572 Peptidase family S41 Ami103574_01880 PF17820 PDZ domain Ami103574_01880 PF01471 Putative peptidoglycan binding domain Ami103574_01885 PF08903 Domain of unknown function (DUF1846) Ami103574_01895 PF07155 ECF-type riboflavin transporter, S component Ami103574_01900 PF00005 ABC transporter Ami103574_01900 PF12558 ATP-binding cassette cobalt transporter Ami103574_01910 PF00395 S-layer homology domain Ami103574_01910 PF00128 Alpha amylase, catalytic domain Ami103574_01910 PF02903 Alpha amylase, N-terminal ig-like domain Ami103574_01925 PF00395 S-layer homology domain Ami103574_01930 PF00395 S-layer homology domain Ami103574_01935 PF00963 Cohesin domain Ami103574_01935 PF00395 S-layer homology domain Ami103574_01940 PF01370 NAD dependent epimerase/dehydratase family Ami103574_01945 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Ami103574_01950 PF02542 YgbB family Ami103574_01950 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Ami103574_01955 PF03023 Lipid II flippase MurJ Ami103574_01960 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Ami103574_01965 PF16363 GDP-mannose 4,6 dehydratase Ami103574_01970 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase Ami103574_01980 PF02397 Bacterial sugar transferase Ami103574_01985 PF17836 PglD N-terminal domain Ami103574_01985 PF00132 Bacterial transferase hexapeptide (six repeats) Ami103574_01990 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Ami103574_01995 PF02086 D12 class N6 adenine-specific DNA methyltransferase Ami103574_02015 PF00534 Glycosyl transferases group 1 Ami103574_02015 PF13439 Glycosyltransferase Family 4 Ami103574_02025 PF16363 GDP-mannose 4,6 dehydratase Ami103574_02030 PF01061 ABC-2 type transporter Ami103574_02035 PF08239 Bacterial SH3 domain Ami103574_02035 PF00005 ABC transporter Ami103574_02045 PF00535 Glycosyl transferase family 2 Ami103574_02050 PF05523 WxcM-like, C-terminal Ami103574_02055 PF00483 Nucleotidyl transferase Ami103574_02060 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Ami103574_02065 PF12464 Maltose acetyltransferase Ami103574_02065 PF00132 Bacterial transferase hexapeptide (six repeats) Ami103574_02075 PF00682 HMGL-like Ami103574_02075 PF07836 DmpG-like communication domain Ami103574_02090 PF00535 Glycosyl transferase family 2 Ami103574_02090 PF01501 Glycosyl transferase family 8 Ami103574_02105 PF16363 GDP-mannose 4,6 dehydratase Ami103574_02120 PF02397 Bacterial sugar transferase Ami103574_02135 PF02719 Polysaccharide biosynthesis protein Ami103574_02140 PF00342 Phosphoglucose isomerase Ami103574_02145 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Ami103574_02145 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ami103574_02150 PF03816 Cell envelope-related transcriptional attenuator domain Ami103574_02155 PF03816 Cell envelope-related transcriptional attenuator domain Ami103574_02160 PF07497 Rho termination factor, RNA-binding domain Ami103574_02160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Ami103574_02160 PF07498 Rho termination factor, N-terminal domain Ami103574_02165 PF07136 Protein of unknown function (DUF1385) Ami103574_02170 PF05175 Methyltransferase small domain Ami103574_02170 PF17827 PrmC N-terminal domain Ami103574_02180 PF01197 Ribosomal protein L31 Ami103574_02185 PF03462 PCRF domain Ami103574_02185 PF00472 RF-1 domain Ami103574_02190 PF03481 Putative GTP-binding controlling metal-binding Ami103574_02190 PF01300 Telomere recombination Ami103574_02195 PF02502 Ribose/Galactose Isomerase Ami103574_02205 PF00579 tRNA synthetases class I (W and Y) Ami103574_02210 PF00005 ABC transporter Ami103574_02220 PF02687 FtsX-like permease family Ami103574_02220 PF00005 ABC transporter Ami103574_02220 PF12704 MacB-like periplasmic core domain Ami103574_02225 PF00072 Response regulator receiver domain Ami103574_02225 PF00486 Transcriptional regulatory protein, C terminal Ami103574_02230 PF14827 Double sensory domain of two-component sensor kinase Ami103574_02230 PF13426 PAS domain Ami103574_02230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_02230 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_02230 PF00672 HAMP domain Ami103574_02235 PF00795 Carbon-nitrogen hydrolase Ami103574_02235 PF02540 NAD synthase Ami103574_02240 PF01966 HD domain Ami103574_02240 PF01336 OB-fold nucleic acid binding domain Ami103574_02245 PF14490 Helix-hairpin-helix containing domain Ami103574_02245 PF13538 UvrD-like helicase C-terminal domain Ami103574_02245 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Ami103574_02250 PF00156 Phosphoribosyl transferase domain Ami103574_02255 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Ami103574_02255 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Ami103574_02260 PF02457 DisA bacterial checkpoint controller nucleotide-binding Ami103574_02270 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Ami103574_02270 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Ami103574_02270 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Ami103574_02270 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Ami103574_02275 PF01380 SIS domain Ami103574_02285 PF13426 PAS domain Ami103574_02285 PF02954 Bacterial regulatory protein, Fis family Ami103574_02285 PF00158 Sigma-54 interaction domain Ami103574_02290 PF00753 Metallo-beta-lactamase superfamily Ami103574_02290 PF16123 Hydroxyacylglutathione hydrolase C-terminus Ami103574_02295 PF13520 Amino acid permease Ami103574_02305 PF01546 Peptidase family M20/M25/M40 Ami103574_02305 PF07687 Peptidase dimerisation domain Ami103574_02310 PF07687 Peptidase dimerisation domain Ami103574_02310 PF01546 Peptidase family M20/M25/M40 Ami103574_02315 PF13520 Amino acid permease Ami103574_02320 PF00654 Voltage gated chloride channel Ami103574_02335 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Ami103574_02335 PF05221 S-adenosyl-L-homocysteine hydrolase Ami103574_02345 PF00749 tRNA synthetases class I (E and Q), catalytic domain Ami103574_02350 PF01522 Polysaccharide deacetylase Ami103574_02355 PF14821 Threonine synthase N terminus Ami103574_02355 PF00291 Pyridoxal-phosphate dependent enzyme Ami103574_02360 PF02142 MGS-like domain Ami103574_02375 PF01381 Helix-turn-helix Ami103574_02380 PF01381 Helix-turn-helix Ami103574_02395 PF04232 Stage V sporulation protein S (SpoVS) Ami103574_02405 PF01695 IstB-like ATP binding protein Ami103574_02470 PF00436 Single-strand binding protein family Ami103574_02665 PF04542 Sigma-70 region 2 Ami103574_02665 PF08281 Sigma-70, region 4 Ami103574_02720 PF04026 SpoVG Ami103574_02730 PF06750 Bacterial Peptidase A24 N-terminal domain Ami103574_02730 PF01478 Type IV leader peptidase family Ami103574_02745 PF00437 Type II/IV secretion system protein Ami103574_02815 PF12833 Helix-turn-helix domain Ami103574_02845 PF02374 Anion-transporting ATPase Ami103574_02850 PF06953 Arsenical resistance operon trans-acting repressor ArsD Ami103574_02860 PF01758 Sodium Bile acid symporter family Ami103574_02865 PF01022 Bacterial regulatory protein, arsR family Ami103574_02885 PF00877 NlpC/P60 family Ami103574_02920 PF08275 DNA primase catalytic core, N-terminal domain Ami103574_02920 PF01807 CHC2 zinc finger Ami103574_02930 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) Ami103574_02930 PF01348 Type II intron maturase Ami103574_02955 PF00072 Response regulator receiver domain Ami103574_02955 PF00486 Transcriptional regulatory protein, C terminal Ami103574_02960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_02960 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_02970 PF04294 VanW like protein Ami103574_02975 PF01820 D-ala D-ala ligase N-terminus Ami103574_02975 PF07478 D-ala D-ala ligase C-terminus Ami103574_02980 PF02557 D-alanyl-D-alanine carboxypeptidase Ami103574_02985 PF01757 Acyltransferase family Ami103574_02985 PF00842 Alanine racemase, C-terminal domain Ami103574_02985 PF01168 Alanine racemase, N-terminal domain Ami103574_03000 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Ami103574_03035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_03035 PF00183 Hsp90 protein Ami103574_03045 PF02368 Bacterial Ig-like domain (group 2) Ami103574_03045 PF11999 Protein of unknown function (DUF3494) Ami103574_03050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_03050 PF02743 Cache domain Ami103574_03050 PF00672 HAMP domain Ami103574_03070 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ami103574_03070 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Ami103574_03075 PF02659 Putative manganese efflux pump Ami103574_03080 PF01725 Ham1 family Ami103574_03090 PF01842 ACT domain Ami103574_03090 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ami103574_03090 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Ami103574_03095 PF00266 Aminotransferase class-V Ami103574_03100 PF01676 Metalloenzyme superfamily Ami103574_03100 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Ami103574_03105 PF07943 Penicillin-binding protein 5, C-terminal domain Ami103574_03105 PF00768 D-alanyl-D-alanine carboxypeptidase Ami103574_03110 PF08459 UvrC Helix-hairpin-helix N-terminal Ami103574_03110 PF02151 UvrB/uvrC motif Ami103574_03110 PF01541 GIY-YIG catalytic domain Ami103574_03115 PF06949 Protein of unknown function (DUF1292) Ami103574_03125 PF00460 Flagella basal body rod protein Ami103574_03125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Ami103574_03130 PF02049 Flagellar hook-basal body complex protein FliE Ami103574_03135 PF08345 Flagellar M-ring protein C-terminal Ami103574_03135 PF01514 Secretory protein of YscJ/FliF family Ami103574_03140 PF01706 FliG C-terminal domain Ami103574_03140 PF14841 FliG middle domain Ami103574_03140 PF14842 FliG N-terminal domain Ami103574_03150 PF02874 ATP synthase alpha/beta family, beta-barrel domain Ami103574_03150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Ami103574_03150 PF18269 T3SS EscN ATPase C-terminal domain Ami103574_03175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Ami103574_03175 PF00460 Flagella basal body rod protein Ami103574_03185 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Ami103574_03185 PF02154 Flagellar motor switch protein FliM Ami103574_03190 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Ami103574_03190 PF04509 CheC-like family Ami103574_03195 PF00072 Response regulator receiver domain Ami103574_03205 PF00813 FliP family Ami103574_03210 PF01313 Bacterial export proteins, family 3 Ami103574_03215 PF01311 Bacterial export proteins, family 1 Ami103574_03220 PF01312 FlhB HrpN YscU SpaS Family Ami103574_03245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Ami103574_03245 PF00460 Flagella basal body rod protein Ami103574_03260 PF02623 FliW protein Ami103574_03265 PF02599 Global regulator protein family Ami103574_03270 PF00700 Bacterial flagellin C-terminal helical region Ami103574_03270 PF00669 Bacterial flagellin N-terminal helical region Ami103574_03280 PF02491 SHS2 domain inserted in FTSA Ami103574_03285 PF00072 Response regulator receiver domain Ami103574_03285 PF01339 CheB methylesterase Ami103574_03290 PF01739 CheR methyltransferase, SAM binding domain Ami103574_03290 PF03705 CheR methyltransferase, all-alpha domain Ami103574_03295 PF02895 Signal transducing histidine kinase, homodimeric domain Ami103574_03295 PF09078 CheY binding Ami103574_03295 PF01584 CheW-like domain Ami103574_03295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_03295 PF01627 Hpt domain Ami103574_03300 PF00331 Glycosyl hydrolase family 10 Ami103574_03300 PF00395 S-layer homology domain Ami103574_03300 PF06452 Carbohydrate family 9 binding domain-like Ami103574_03300 PF02018 Carbohydrate binding domain Ami103574_03305 PF00460 Flagella basal body rod protein Ami103574_03310 PF00771 FHIPEP family Ami103574_03315 PF04542 Sigma-70 region 2 Ami103574_03315 PF04539 Sigma-70 region 3 Ami103574_03315 PF04545 Sigma-70, region 4 Ami103574_03320 PF00460 Flagella basal body rod protein Ami103574_03320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Ami103574_03325 PF00460 Flagella basal body rod protein Ami103574_03325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Ami103574_03335 PF04509 CheC-like family Ami103574_03340 PF03975 CheD chemotactic sensory transduction Ami103574_03350 PF13614 AAA domain Ami103574_03355 PF07195 Flagellar hook-associated protein 2 C-terminus Ami103574_03355 PF02465 Flagellar hook-associated protein 2 N-terminus Ami103574_03355 PF07196 Flagellin hook IN motif Ami103574_03370 PF00156 Phosphoribosyl transferase domain Ami103574_03375 PF02608 ABC transporter substrate-binding protein PnrA-like Ami103574_03400 PF01965 DJ-1/PfpI family Ami103574_03405 PF02811 PHP domain Ami103574_03415 PF04070 Domain of unknown function (DUF378) Ami103574_03420 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Ami103574_03420 PF03129 Anticodon binding domain Ami103574_03420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Ami103574_03420 PF02824 TGS domain Ami103574_03425 PF00294 pfkB family carbohydrate kinase Ami103574_03430 PF00338 Ribosomal protein S10p/S20e Ami103574_03435 PF00297 Ribosomal protein L3 Ami103574_03440 PF00573 Ribosomal protein L4/L1 family Ami103574_03445 PF00276 Ribosomal protein L23 Ami103574_03450 PF03947 Ribosomal Proteins L2, C-terminal domain Ami103574_03450 PF00181 Ribosomal Proteins L2, RNA binding domain Ami103574_03455 PF00203 Ribosomal protein S19 Ami103574_03460 PF00237 Ribosomal protein L22p/L17e Ami103574_03465 PF07650 KH domain Ami103574_03465 PF00189 Ribosomal protein S3, C-terminal domain Ami103574_03470 PF00252 Ribosomal protein L16p/L10e Ami103574_03475 PF00831 Ribosomal L29 protein Ami103574_03480 PF00366 Ribosomal protein S17 Ami103574_03485 PF00238 Ribosomal protein L14p/L23e Ami103574_03490 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Ami103574_03490 PF00467 KOW motif Ami103574_03495 PF00281 Ribosomal protein L5 Ami103574_03495 PF00673 ribosomal L5P family C-terminus Ami103574_03500 PF00253 Ribosomal protein S14p/S29e Ami103574_03505 PF00410 Ribosomal protein S8 Ami103574_03510 PF00347 Ribosomal protein L6 Ami103574_03515 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ami103574_03520 PF03719 Ribosomal protein S5, C-terminal domain Ami103574_03520 PF00333 Ribosomal protein S5, N-terminal domain Ami103574_03525 PF00327 Ribosomal protein L30p/L7e Ami103574_03530 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ami103574_03535 PF00344 SecY translocase Ami103574_03540 PF05191 Adenylate kinase, active site lid Ami103574_03545 PF00557 Metallopeptidase family M24 Ami103574_03550 PF01176 Translation initiation factor 1A / IF-1 Ami103574_03555 PF00444 Ribosomal protein L36 Ami103574_03560 PF00416 Ribosomal protein S13/S18 Ami103574_03565 PF00411 Ribosomal protein S11 Ami103574_03570 PF00163 Ribosomal protein S4/S9 N-terminal domain Ami103574_03570 PF01479 S4 domain Ami103574_03575 PF01000 RNA polymerase Rpb3/RpoA insert domain Ami103574_03575 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Ami103574_03575 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Ami103574_03580 PF01196 Ribosomal protein L17 Ami103574_03585 PF00005 ABC transporter Ami103574_03590 PF00005 ABC transporter Ami103574_03595 PF02361 Cobalt transport protein Ami103574_03605 PF02390 Putative methyltransferase Ami103574_03620 PF01553 Acyltransferase Ami103574_03630 PF07969 Amidohydrolase family Ami103574_03635 PF03606 C4-dicarboxylate anaerobic carrier Ami103574_03645 PF02378 Phosphotransferase system, EIIC Ami103574_03650 PF00037 4Fe-4S binding domain Ami103574_03655 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Ami103574_03655 PF10371 Domain of unknown function Ami103574_03655 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Ami103574_03655 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ami103574_03655 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Ami103574_03660 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Ami103574_03660 PF00175 Oxidoreductase NAD-binding domain Ami103574_03665 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami103574_03665 PF13247 4Fe-4S dicluster domain Ami103574_03665 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Ami103574_03670 PF10996 Beta-Casp domain Ami103574_03670 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Ami103574_03670 PF00753 Metallo-beta-lactamase superfamily Ami103574_03675 PF02829 3H domain Ami103574_03675 PF08279 HTH domain Ami103574_03680 PF07687 Peptidase dimerisation domain Ami103574_03680 PF01546 Peptidase family M20/M25/M40 Ami103574_03690 PF00226 DnaJ domain Ami103574_03690 PF00684 DnaJ central domain Ami103574_03690 PF01556 DnaJ C terminal domain Ami103574_03700 PF01113 Dihydrodipicolinate reductase, N-terminus Ami103574_03700 PF05173 Dihydrodipicolinate reductase, C-terminus Ami103574_03715 PF00082 Subtilase family Ami103574_03725 PF04397 LytTr DNA-binding domain Ami103574_03725 PF00072 Response regulator receiver domain Ami103574_03760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Ami103574_03760 PF05698 Bacterial trigger factor protein (TF) C-terminus Ami103574_03760 PF05697 Bacterial trigger factor protein (TF) Ami103574_03765 PF00574 Clp protease Ami103574_03770 PF10431 C-terminal, D2-small domain, of ClpB protein Ami103574_03770 PF06689 ClpX C4-type zinc finger Ami103574_03770 PF07724 AAA domain (Cdc48 subfamily) Ami103574_03775 PF02190 ATP-dependent protease La (LON) substrate-binding domain Ami103574_03775 PF05362 Lon protease (S16) C-terminal proteolytic domain Ami103574_03775 PF00004 ATPase family associated with various cellular activities (AAA) Ami103574_03780 PF01926 50S ribosome-binding GTPase Ami103574_03795 PF06130 Phosphate propanoyltransferase Ami103574_03810 PF04203 Sortase domain Ami103574_03830 PF00482 Type II secretion system (T2SS), protein F Ami103574_03855 PF00437 Type II/IV secretion system protein Ami103574_03860 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Ami103574_03865 PF08486 Stage II sporulation protein Ami103574_03880 PF08668 HDOD domain Ami103574_03880 PF00563 EAL domain Ami103574_03895 PF07670 Nucleoside recognition Ami103574_03895 PF02421 Ferrous iron transport protein B Ami103574_03895 PF17910 FeoB cytosolic helical domain Ami103574_03895 PF07664 Ferrous iron transport protein B C terminus Ami103574_03910 PF00258 Flavodoxin Ami103574_03920 PF10609 NUBPL iron-transfer P-loop NTPase Ami103574_03925 PF02001 Protein of unknown function DUF134 Ami103574_03930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_03930 PF00672 HAMP domain Ami103574_03930 PF16591 Helical bimodular sensor domain Ami103574_03935 PF01144 Coenzyme A transferase Ami103574_03940 PF01144 Coenzyme A transferase Ami103574_03945 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_03955 PF13520 Amino acid permease Ami103574_03970 PF01969 Protein of unknown function DUF111 Ami103574_03990 PF00005 ABC transporter Ami103574_04000 PF16736 Single Cache-like Ami103574_04000 PF00989 PAS fold Ami103574_04000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_04000 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_04005 PF00072 Response regulator receiver domain Ami103574_04005 PF00486 Transcriptional regulatory protein, C terminal Ami103574_04025 PF01476 LysM domain Ami103574_04025 PF00704 Glycosyl hydrolases family 18 Ami103574_04030 PF02203 Tar ligand binding domain homologue Ami103574_04030 PF00672 HAMP domain Ami103574_04030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_04030 PF00672 HAMP domain Ami103574_04030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_04030 PF02203 Tar ligand binding domain homologue Ami103574_04035 PF02436 Conserved carboxylase domain Ami103574_04035 PF00682 HMGL-like Ami103574_04035 PF00364 Biotin-requiring enzyme Ami103574_04040 PF01131 DNA topoisomerase Ami103574_04040 PF01751 Toprim domain Ami103574_04045 PF06874 Firmicute fructose-1,6-bisphosphatase Ami103574_04050 PF04204 Homoserine O-succinyltransferase Ami103574_04060 PF02310 B12 binding domain Ami103574_04060 PF00809 Pterin binding enzyme Ami103574_04060 PF02607 B12 binding domain Ami103574_04060 PF02574 Homocysteine S-methyltransferase Ami103574_04060 PF02965 Vitamin B12 dependent methionine synthase, activation domain Ami103574_04065 PF00005 ABC transporter Ami103574_04065 PF12848 ABC transporter Ami103574_04070 PF00005 ABC transporter Ami103574_04070 PF00664 ABC transporter transmembrane region Ami103574_04075 PF00664 ABC transporter transmembrane region Ami103574_04075 PF00005 ABC transporter Ami103574_04090 PF00149 Calcineurin-like phosphoesterase Ami103574_04100 PF08281 Sigma-70, region 4 Ami103574_04100 PF04542 Sigma-70 region 2 Ami103574_04110 PF13732 Domain of unknown function (DUF4162) Ami103574_04110 PF00005 ABC transporter Ami103574_04155 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Ami103574_04205 PF00963 Cohesin domain Ami103574_04205 PF00395 S-layer homology domain Ami103574_04215 PF01076 Plasmid recombination enzyme Ami103574_04250 PF13408 Recombinase zinc beta ribbon domain Ami103574_04250 PF00239 Resolvase, N terminal domain Ami103574_04250 PF07508 Recombinase Ami103574_04300 PF04232 Stage V sporulation protein S (SpoVS) Ami103574_04305 PF15714 Stage V sporulation protein T C-terminal, transcription factor Ami103574_04305 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Ami103574_04425 PF00574 Clp protease Ami103574_04520 PF02368 Bacterial Ig-like domain (group 2) Ami103574_04520 PF11999 Protein of unknown function (DUF3494) Ami103574_04545 PF05067 Manganese containing catalase Ami103574_04615 PF04865 Baseplate J-like protein Ami103574_04650 PF01551 Peptidase family M23 Ami103574_04670 PF03372 Endonuclease/Exonuclease/phosphatase family Ami103574_04675 PF00465 Iron-containing alcohol dehydrogenase Ami103574_04700 PF13443 Cro/C1-type HTH DNA-binding domain Ami103574_04710 PF13472 GDSL-like Lipase/Acylhydrolase family Ami103574_04720 PF03061 Thioesterase superfamily Ami103574_04725 PF01938 TRAM domain Ami103574_04725 PF05958 tRNA (Uracil-5-)-methyltransferase Ami103574_04730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_04730 PF03466 LysR substrate binding domain Ami103574_04735 PF01177 Asp/Glu/Hydantoin racemase Ami103574_04740 PF00155 Aminotransferase class I and II Ami103574_04745 PF00158 Sigma-54 interaction domain Ami103574_04745 PF13426 PAS domain Ami103574_04745 PF02954 Bacterial regulatory protein, Fis family Ami103574_04755 PF13520 Amino acid permease Ami103574_04760 PF03576 Peptidase family S58 Ami103574_04770 PF00753 Metallo-beta-lactamase superfamily Ami103574_04770 PF16123 Hydroxyacylglutathione hydrolase C-terminus Ami103574_04780 PF01965 DJ-1/PfpI family Ami103574_04800 PF00872 Transposase, Mutator family Ami103574_04810 PF18019 HD domain Ami103574_04810 PF00270 DEAD/DEAH box helicase Ami103574_04810 PF18395 Cas3 C-terminal domain Ami103574_04825 PF09344 CT1975-like protein Ami103574_04835 PF08798 CRISPR associated protein Ami103574_04840 PF01867 CRISPR associated protein Cas1 Ami103574_04845 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Ami103574_04845 PF14579 Helix-hairpin-helix motif Ami103574_04845 PF14480 DNA polymerase III polC-type N-terminus I Ami103574_04845 PF11490 DNA polymerase III polC-type N-terminus II Ami103574_04845 PF07733 Bacterial DNA polymerase III alpha NTPase domain Ami103574_04845 PF00929 Exonuclease Ami103574_04845 PF02811 PHP domain Ami103574_04870 PF01209 ubiE/COQ5 methyltransferase family Ami103574_04875 PF00563 EAL domain Ami103574_04875 PF13426 PAS domain Ami103574_04875 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_04880 PF01638 HxlR-like helix-turn-helix Ami103574_04895 PF08031 Berberine and berberine like Ami103574_04895 PF01565 FAD binding domain Ami103574_04900 PF01047 MarR family Ami103574_04910 PF01795 MraW methylase family Ami103574_04915 PF05853 beta-keto acid cleavage enzyme Ami103574_04920 PF03466 LysR substrate binding domain Ami103574_04920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_04925 PF02803 Thiolase, C-terminal domain Ami103574_04925 PF00108 Thiolase, N-terminal domain Ami103574_04930 PF01144 Coenzyme A transferase Ami103574_04935 PF01144 Coenzyme A transferase Ami103574_04940 PF07690 Major Facilitator Superfamily Ami103574_04950 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami103574_04950 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Ami103574_04960 PF00890 FAD binding domain Ami103574_04960 PF04205 FMN-binding domain Ami103574_04960 PF03358 NADPH-dependent FMN reductase Ami103574_04970 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami103574_04970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Ami103574_04980 PF00378 Enoyl-CoA hydratase/isomerase Ami103574_04985 PF00183 Hsp90 protein Ami103574_05005 PF12008 Type I restriction and modification enzyme - subunit R C terminal Ami103574_05005 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Ami103574_05005 PF18766 SWI2/SNF2 ATPase Ami103574_05020 PF12161 HsdM N-terminal domain Ami103574_05020 PF02384 N-6 DNA Methylase Ami103574_05025 PF13411 MerR HTH family regulatory protein Ami103574_05030 PF00465 Iron-containing alcohol dehydrogenase Ami103574_05040 PF07581 The GLUG motif Ami103574_05040 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) Ami103574_05050 PF12704 MacB-like periplasmic core domain Ami103574_05050 PF00005 ABC transporter Ami103574_05050 PF02687 FtsX-like permease family Ami103574_05055 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_05055 PF00672 HAMP domain Ami103574_05055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_05060 PF00072 Response regulator receiver domain Ami103574_05060 PF00486 Transcriptional regulatory protein, C terminal Ami103574_05065 PF01047 MarR family Ami103574_05075 PF00881 Nitroreductase family Ami103574_05080 PF08241 Methyltransferase domain Ami103574_05085 PF02082 Transcriptional regulator Ami103574_05095 PF00005 ABC transporter Ami103574_05095 PF00664 ABC transporter transmembrane region Ami103574_05100 PF04954 Siderophore-interacting protein Ami103574_05100 PF00005 ABC transporter Ami103574_05100 PF00664 ABC transporter transmembrane region Ami103574_05100 PF08021 Siderophore-interacting FAD-binding domain Ami103574_05110 PF00301 Rubredoxin Ami103574_05110 PF00258 Flavodoxin Ami103574_05110 PF00753 Metallo-beta-lactamase superfamily Ami103574_05115 PF02245 Methylpurine-DNA glycosylase (MPG) Ami103574_05120 PF01047 MarR family Ami103574_05125 PF00999 Sodium/hydrogen exchanger family Ami103574_05135 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Ami103574_05145 PF00155 Aminotransferase class I and II Ami103574_05145 PF00392 Bacterial regulatory proteins, gntR family Ami103574_05150 PF03591 AzlC protein Ami103574_05155 PF05437 Branched-chain amino acid transport protein (AzlD) Ami103574_05170 PF01638 HxlR-like helix-turn-helix Ami103574_05175 PF13520 Amino acid permease Ami103574_05195 PF01618 MotA/TolQ/ExbB proton channel family Ami103574_05200 PF13677 Membrane MotB of proton-channel complex MotA/MotB Ami103574_05200 PF00691 OmpA family Ami103574_05205 PF00009 Elongation factor Tu GTP binding domain Ami103574_05205 PF14492 Elongation Factor G, domain II Ami103574_05205 PF00679 Elongation factor G C-terminus Ami103574_05205 PF03764 Elongation factor G, domain IV Ami103574_05210 PF00324 Amino acid permease Ami103574_05215 PF00155 Aminotransferase class I and II Ami103574_05220 PF02423 Ornithine cyclodeaminase/mu-crystallin family Ami103574_05230 PF17853 GGDEF-like domain Ami103574_05230 PF07905 Purine catabolism regulatory protein-like family Ami103574_05230 PF13556 PucR C-terminal helix-turn-helix domain Ami103574_05240 PF00963 Cohesin domain Ami103574_05240 PF00395 S-layer homology domain Ami103574_05255 PF00731 AIR carboxylase Ami103574_05265 PF01381 Helix-turn-helix Ami103574_05270 PF00465 Iron-containing alcohol dehydrogenase Ami103574_05285 PF13411 MerR HTH family regulatory protein Ami103574_05300 PF00005 ABC transporter Ami103574_05305 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_05315 PF01551 Peptidase family M23 Ami103574_05320 PF01544 CorA-like Mg2+ transporter protein Ami103574_05325 PF03063 Prismane/CO dehydrogenase family Ami103574_05330 PF03551 Transcriptional regulator PadR-like family Ami103574_05365 PF08402 TOBE domain Ami103574_05365 PF00005 ABC transporter Ami103574_05370 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_05375 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_05380 PF13416 Bacterial extracellular solute-binding protein Ami103574_05385 PF00484 Carbonic anhydrase Ami103574_05390 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_05395 PF09084 NMT1/THI5 like Ami103574_05400 PF00005 ABC transporter Ami103574_05405 PF01026 TatD related DNase Ami103574_05425 PF00072 Response regulator receiver domain Ami103574_05425 PF04397 LytTr DNA-binding domain Ami103574_05430 PF02368 Bacterial Ig-like domain (group 2) Ami103574_05435 PF12833 Helix-turn-helix domain Ami103574_05440 PF00557 Metallopeptidase family M24 Ami103574_05440 PF02810 SEC-C motif Ami103574_05450 PF00132 Bacterial transferase hexapeptide (six repeats) Ami103574_05460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Ami103574_05470 PF02018 Carbohydrate binding domain Ami103574_05470 PF00395 S-layer homology domain Ami103574_05470 PF00331 Glycosyl hydrolase family 10 Ami103574_05470 PF06452 Carbohydrate family 9 binding domain-like Ami103574_05475 PF00082 Subtilase family Ami103574_05485 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Ami103574_05485 PF01297 Zinc-uptake complex component A periplasmic Ami103574_05490 PF00005 ABC transporter Ami103574_05495 PF00950 ABC 3 transport family Ami103574_05505 PF00563 EAL domain Ami103574_05505 PF03707 Bacterial signalling protein N terminal repeat Ami103574_05505 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_05510 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_05510 PF13426 PAS domain Ami103574_05510 PF00563 EAL domain Ami103574_05520 PF00155 Aminotransferase class I and II Ami103574_05525 PF02423 Ornithine cyclodeaminase/mu-crystallin family Ami103574_05535 PF02525 Flavodoxin-like fold Ami103574_05540 PF13426 PAS domain Ami103574_05540 PF00158 Sigma-54 interaction domain Ami103574_05540 PF02954 Bacterial regulatory protein, Fis family Ami103574_05545 PF00324 Amino acid permease Ami103574_05550 PF01546 Peptidase family M20/M25/M40 Ami103574_05555 PF00005 ABC transporter Ami103574_05555 PF00664 ABC transporter transmembrane region Ami103574_05560 PF00664 ABC transporter transmembrane region Ami103574_05560 PF00005 ABC transporter Ami103574_05570 PF08331 Domain of unknown function (DUF1730) Ami103574_05580 PF03190 Protein of unknown function, DUF255 Ami103574_05585 PF03190 Protein of unknown function, DUF255 Ami103574_05595 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_05595 PF00672 HAMP domain Ami103574_05595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_05595 PF18698 Histidine kinase sensor domain Ami103574_05600 PF00072 Response regulator receiver domain Ami103574_05600 PF00486 Transcriptional regulatory protein, C terminal Ami103574_05605 PF00395 S-layer homology domain Ami103574_05610 PF13411 MerR HTH family regulatory protein Ami103574_05610 PF06445 GyrI-like small molecule binding domain Ami103574_05615 PF00893 Small Multidrug Resistance protein Ami103574_05635 PF00936 BMC domain Ami103574_05640 PF00936 BMC domain Ami103574_05645 PF00171 Aldehyde dehydrogenase family Ami103574_05645 PF00465 Iron-containing alcohol dehydrogenase Ami103574_05650 PF01228 Glycine radical Ami103574_05650 PF02901 Pyruvate formate lyase-like Ami103574_05655 PF04055 Radical SAM superfamily Ami103574_05655 PF13187 4Fe-4S dicluster domain Ami103574_05660 PF00936 BMC domain Ami103574_05685 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Ami103574_05685 PF13375 RnfC Barrel sandwich hybrid domain Ami103574_05685 PF10531 SLBB domain Ami103574_05685 PF13237 4Fe-4S dicluster domain Ami103574_05700 PF00936 BMC domain Ami103574_05705 PF00465 Iron-containing alcohol dehydrogenase Ami103574_05705 PF00171 Aldehyde dehydrogenase family Ami103574_05710 PF06130 Phosphate propanoyltransferase Ami103574_05715 PF00936 BMC domain Ami103574_05755 PF00696 Amino acid kinase family Ami103574_05760 PF03466 LysR substrate binding domain Ami103574_05760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_05770 PF00171 Aldehyde dehydrogenase family Ami103574_05785 PF04232 Stage V sporulation protein S (SpoVS) Ami103574_05795 PF12848 ABC transporter Ami103574_05795 PF00005 ABC transporter Ami103574_05800 PF00696 Amino acid kinase family Ami103574_05805 PF14748 Pyrroline-5-carboxylate reductase dimerisation Ami103574_05805 PF03807 NADP oxidoreductase coenzyme F420-dependent Ami103574_05810 PF00293 NUDIX domain Ami103574_05820 PF02899 Phage integrase, N-terminal SAM-like domain Ami103574_05820 PF00589 Phage integrase family Ami103574_05825 PF00497 Bacterial extracellular solute-binding proteins, family 3 Ami103574_05830 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_05835 PF00005 ABC transporter Ami103574_05840 PF01053 Cys/Met metabolism PLP-dependent enzyme Ami103574_05845 PF01245 Ribosomal protein L19 Ami103574_05850 PF01926 50S ribosome-binding GTPase Ami103574_05855 PF01351 Ribonuclease HII Ami103574_05860 PF02219 Methylenetetrahydrofolate reductase Ami103574_05865 PF01268 Formate--tetrahydrofolate ligase Ami103574_05870 PF04961 Formiminotransferase-cyclodeaminase Ami103574_05875 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Ami103574_05875 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Ami103574_05880 PF00490 Delta-aminolevulinic acid dehydratase Ami103574_05885 PF00202 Aminotransferase class-III Ami103574_05890 PF02583 Metal-sensitive transcriptional repressor Ami103574_05895 PF00403 Heavy-metal-associated domain Ami103574_05905 PF06180 Cobalt chelatase (CbiK) Ami103574_05910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Ami103574_05915 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Ami103574_05915 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Ami103574_05915 PF01488 Shikimate / quinate 5-dehydrogenase Ami103574_05920 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Ami103574_05920 PF01488 Shikimate / quinate 5-dehydrogenase Ami103574_05925 PF03900 Porphobilinogen deaminase, C-terminal domain Ami103574_05925 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Ami103574_05930 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Ami103574_05930 PF02602 Uroporphyrinogen-III synthase HemD Ami103574_05935 PF17760 UvrA interaction domain Ami103574_05935 PF17755 UvrA DNA-binding domain Ami103574_05935 PF00005 ABC transporter Ami103574_05945 PF01381 Helix-turn-helix Ami103574_05960 PF13649 Methyltransferase domain Ami103574_05965 PF00440 Bacterial regulatory proteins, tetR family Ami103574_05975 PF01381 Helix-turn-helix Ami103574_05995 PF01327 Polypeptide deformylase Ami103574_06020 PF01012 Electron transfer flavoprotein domain Ami103574_06025 PF00766 Electron transfer flavoprotein FAD-binding domain Ami103574_06025 PF01012 Electron transfer flavoprotein domain Ami103574_06030 PF02913 FAD linked oxidases, C-terminal domain Ami103574_06030 PF01565 FAD binding domain Ami103574_06035 PF00155 Aminotransferase class I and II Ami103574_06040 PF00440 Bacterial regulatory proteins, tetR family Ami103574_06040 PF08361 MAATS-type transcriptional repressor, C-terminal region Ami103574_06045 PF00005 ABC transporter Ami103574_06045 PF00664 ABC transporter transmembrane region Ami103574_06050 PF00005 ABC transporter Ami103574_06050 PF00664 ABC transporter transmembrane region Ami103574_06055 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_06055 PF08448 PAS fold Ami103574_06070 PF00133 tRNA synthetases class I (I, L, M and V) Ami103574_06070 PF10458 Valyl tRNA synthetase tRNA binding arm Ami103574_06070 PF08264 Anticodon-binding domain of tRNA Ami103574_06075 PF08245 Mur ligase middle domain Ami103574_06075 PF02875 Mur ligase family, glutamate ligase domain Ami103574_06080 PF00781 Diacylglycerol kinase catalytic domain Ami103574_06090 PF00583 Acetyltransferase (GNAT) family Ami103574_06095 PF13739 Deacetylase PdaC Ami103574_06095 PF01522 Polysaccharide deacetylase Ami103574_06095 PF11738 Protein of unknown function (DUF3298) Ami103574_06105 PF17676 LD-carboxypeptidase C-terminal domain Ami103574_06105 PF02016 LD-carboxypeptidase N-terminal domain Ami103574_06110 PF07670 Nucleoside recognition Ami103574_06115 PF07670 Nucleoside recognition Ami103574_06135 PF07687 Peptidase dimerisation domain Ami103574_06135 PF01546 Peptidase family M20/M25/M40 Ami103574_06140 PF00324 Amino acid permease Ami103574_06145 PF07687 Peptidase dimerisation domain Ami103574_06145 PF01546 Peptidase family M20/M25/M40 Ami103574_06150 PF07969 Amidohydrolase family Ami103574_06155 PF07969 Amidohydrolase family Ami103574_06170 PF02504 Fatty acid synthesis protein Ami103574_06175 PF14622 Ribonuclease-III-like Ami103574_06175 PF00035 Double-stranded RNA binding motif Ami103574_06180 PF06470 SMC proteins Flexible Hinge Domain Ami103574_06180 PF02463 RecF/RecN/SMC N terminal domain Ami103574_06185 PF02881 SRP54-type protein, helical bundle domain Ami103574_06185 PF00448 SRP54-type protein, GTPase domain Ami103574_06190 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Ami103574_06190 PF01926 50S ribosome-binding GTPase Ami103574_06195 PF02660 Glycerol-3-phosphate acyltransferase Ami103574_06200 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Ami103574_06200 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Ami103574_06205 PF04055 Radical SAM superfamily Ami103574_06205 PF01938 TRAM domain Ami103574_06205 PF00919 Uncharacterized protein family UPF0004 Ami103574_06220 PF01515 Phosphate acetyl/butaryl transferase Ami103574_06225 PF00871 Acetokinase family Ami103574_06230 PF00155 Aminotransferase class I and II Ami103574_06250 PF03965 Penicillinase repressor Ami103574_06255 PF09547 Stage IV sporulation protein A (spore_IV_A) Ami103574_06265 PF07690 Major Facilitator Superfamily Ami103574_06275 PF12849 PBP superfamily domain Ami103574_06280 PF13091 PLD-like domain Ami103574_06280 PF13396 Phospholipase_D-nuclease N-terminal Ami103574_06285 PF00877 NlpC/P60 family Ami103574_06285 PF01476 LysM domain Ami103574_06290 PF02163 Peptidase family M50 Ami103574_06295 PF01638 HxlR-like helix-turn-helix Ami103574_06300 PF02861 Clp amino terminal domain, pathogenicity island component Ami103574_06300 PF00004 ATPase family associated with various cellular activities (AAA) Ami103574_06300 PF17871 AAA lid domain Ami103574_06300 PF10431 C-terminal, D2-small domain, of ClpB protein Ami103574_06300 PF07724 AAA domain (Cdc48 subfamily) Ami103574_06305 PF02901 Pyruvate formate lyase-like Ami103574_06305 PF01228 Glycine radical Ami103574_06310 PF01297 Zinc-uptake complex component A periplasmic Ami103574_06315 PF00005 ABC transporter Ami103574_06320 PF00950 ABC 3 transport family Ami103574_06325 PF01475 Ferric uptake regulator family Ami103574_06330 PF00158 Sigma-54 interaction domain Ami103574_06330 PF13426 PAS domain Ami103574_06330 PF02954 Bacterial regulatory protein, Fis family Ami103574_06335 PF01144 Coenzyme A transferase Ami103574_06340 PF01144 Coenzyme A transferase Ami103574_06345 PF02447 GntP family permease Ami103574_06350 PF05853 beta-keto acid cleavage enzyme Ami103574_06355 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Ami103574_06355 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ami103574_06375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_06375 PF03466 LysR substrate binding domain Ami103574_06380 PF00270 DEAD/DEAH box helicase Ami103574_06380 PF00271 Helicase conserved C-terminal domain Ami103574_06400 PF00817 impB/mucB/samB family Ami103574_06400 PF11799 impB/mucB/samB family C-terminal domain Ami103574_06425 PF00404 Dockerin type I domain Ami103574_06425 PF00150 Cellulase (glycosyl hydrolase family 5) Ami103574_06425 PF03425 Carbohydrate binding domain (family 11) Ami103574_06425 PF02156 Glycosyl hydrolase family 26 Ami103574_06440 PF01546 Peptidase family M20/M25/M40 Ami103574_06440 PF07687 Peptidase dimerisation domain Ami103574_06450 PF02324 Glycosyl hydrolase family 70 Ami103574_06450 PF01473 Putative cell wall binding repeat Ami103574_06455 PF00072 Response regulator receiver domain Ami103574_06470 PF07670 Nucleoside recognition Ami103574_06470 PF07664 Ferrous iron transport protein B C terminus Ami103574_06470 PF17910 FeoB cytosolic helical domain Ami103574_06470 PF02421 Ferrous iron transport protein B Ami103574_06495 PF01676 Metalloenzyme superfamily Ami103574_06495 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Ami103574_06515 PF00395 S-layer homology domain Ami103574_06515 PF06452 Carbohydrate family 9 binding domain-like Ami103574_06515 PF02018 Carbohydrate binding domain Ami103574_06515 PF00331 Glycosyl hydrolase family 10 Ami103574_06520 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Ami103574_06525 PF00148 Nitrogenase component 1 type Oxidoreductase Ami103574_06525 PF08369 Proto-chlorophyllide reductase 57 kD subunit Ami103574_06535 PF13361 UvrD-like helicase C-terminal domain Ami103574_06535 PF00580 UvrD/REP helicase N-terminal domain Ami103574_06535 PF12705 PD-(D/E)XK nuclease superfamily Ami103574_06545 PF01546 Peptidase family M20/M25/M40 Ami103574_06555 PF03590 Aspartate-ammonia ligase Ami103574_06560 PF01343 Peptidase family S49 Ami103574_06565 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Ami103574_06570 PF00448 SRP54-type protein, GTPase domain Ami103574_06570 PF02881 SRP54-type protein, helical bundle domain Ami103574_06570 PF02978 Signal peptide binding domain Ami103574_06575 PF00886 Ribosomal protein S16 Ami103574_06585 PF01782 RimM N-terminal domain Ami103574_06585 PF05239 PRC-barrel domain Ami103574_06590 PF01746 tRNA (Guanine-1)-methyltransferase Ami103574_06600 PF01168 Alanine racemase, N-terminal domain Ami103574_06605 PF04472 Cell division protein SepF Ami103574_06615 PF05103 DivIVA protein Ami103574_06620 PF01252 Signal peptidase (SPase) II Ami103574_06625 PF00849 RNA pseudouridylate synthase Ami103574_06625 PF01479 S4 domain Ami103574_06630 PF01613 Flavin reductase like domain Ami103574_06640 PF05670 NFACT protein RNA binding domain Ami103574_06645 PF03755 YicC-like family, N-terminal region Ami103574_06645 PF08340 Domain of unknown function (DUF1732) Ami103574_06650 PF00625 Guanylate kinase Ami103574_06655 PF01192 RNA polymerase Rpb6 Ami103574_06665 PF00318 Ribosomal protein S2 Ami103574_06670 PF00889 Elongation factor TS Ami103574_06675 PF01966 HD domain Ami103574_06680 PF00696 Amino acid kinase family Ami103574_06685 PF01765 Ribosome recycling factor Ami103574_06690 PF01255 Putative undecaprenyl diphosphate synthase Ami103574_06700 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Ami103574_06700 PF13288 DXP reductoisomerase C-terminal domain Ami103574_06700 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Ami103574_06705 PF17820 PDZ domain Ami103574_06705 PF02163 Peptidase family M50 Ami103574_06710 PF04551 GcpE protein Ami103574_06720 PF11490 DNA polymerase III polC-type N-terminus II Ami103574_06720 PF14579 Helix-hairpin-helix motif Ami103574_06720 PF02811 PHP domain Ami103574_06720 PF00929 Exonuclease Ami103574_06720 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Ami103574_06720 PF07733 Bacterial DNA polymerase III alpha NTPase domain Ami103574_06725 PF00501 AMP-binding enzyme Ami103574_06725 PF14535 AMP-binding enzyme C-terminal domain Ami103574_06735 PF02576 RimP N-terminal domain Ami103574_06735 PF17384 RimP C-terminal SH3 domain Ami103574_06740 PF08529 NusA N-terminal domain Ami103574_06740 PF13184 NusA-like KH domain Ami103574_06740 PF00575 S1 RNA binding domain Ami103574_06750 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family Ami103574_06755 PF11987 Translation-initiation factor 2 Ami103574_06755 PF00009 Elongation factor Tu GTP binding domain Ami103574_06755 PF04760 Translation initiation factor IF-2, N-terminal region Ami103574_06760 PF02033 Ribosome-binding factor A Ami103574_06765 PF01368 DHH family Ami103574_06765 PF02272 DHHA1 domain Ami103574_06770 PF01509 TruB family pseudouridylate synthase (N terminal domain) Ami103574_06770 PF16198 tRNA pseudouridylate synthase B C-terminal domain Ami103574_06775 PF01687 Riboflavin kinase Ami103574_06775 PF06574 FAD synthetase Ami103574_06780 PF00360 Phytochrome region Ami103574_06780 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_06780 PF01590 GAF domain Ami103574_06780 PF00563 EAL domain Ami103574_06785 PF00312 Ribosomal protein S15 Ami103574_06790 PF00013 KH domain Ami103574_06790 PF00575 S1 RNA binding domain Ami103574_06790 PF03725 3' exoribonuclease family, domain 2 Ami103574_06790 PF01138 3' exoribonuclease family, domain 1 Ami103574_06790 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Ami103574_06795 PF01381 Helix-turn-helix Ami103574_06800 PF00884 Sulfatase Ami103574_06810 PF00072 Response regulator receiver domain Ami103574_06810 PF00486 Transcriptional regulatory protein, C terminal Ami103574_06815 PF00989 PAS fold Ami103574_06815 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_06815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_06815 PF16736 Single Cache-like Ami103574_06820 PF02687 FtsX-like permease family Ami103574_06820 PF12704 MacB-like periplasmic core domain Ami103574_06820 PF00005 ABC transporter Ami103574_06830 PF07694 5TMR of 5TMR-LYT Ami103574_06830 PF06580 Histidine kinase Ami103574_06835 PF04397 LytTr DNA-binding domain Ami103574_06835 PF00072 Response regulator receiver domain Ami103574_06850 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Ami103574_06850 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Ami103574_06870 PF02743 Cache domain Ami103574_06870 PF00672 HAMP domain Ami103574_06870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_06930 PF00005 ABC transporter Ami103574_06930 PF13732 Domain of unknown function (DUF4162) Ami103574_06955 PF02954 Bacterial regulatory protein, Fis family Ami103574_06955 PF13426 PAS domain Ami103574_06955 PF00158 Sigma-54 interaction domain Ami103574_06960 PF14693 Ribosomal protein TL5, C-terminal domain Ami103574_06960 PF01386 Ribosomal L25p family Ami103574_06965 PF00324 Amino acid permease Ami103574_06970 PF01546 Peptidase family M20/M25/M40 Ami103574_06975 PF02515 CoA-transferase family III Ami103574_06980 PF00378 Enoyl-CoA hydratase/isomerase Ami103574_06990 PF00248 Aldo/keto reductase family Ami103574_06995 PF00293 NUDIX domain Ami103574_07000 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Ami103574_07000 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Ami103574_07005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_07005 PF09308 LuxQ, periplasmic Ami103574_07005 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_07005 PF00072 Response regulator receiver domain Ami103574_07010 PF00072 Response regulator receiver domain Ami103574_07015 PF12850 Calcineurin-like phosphoesterase superfamily domain Ami103574_07025 PF02308 MgtC family Ami103574_07035 PF00764 Arginosuccinate synthase Ami103574_07040 PF01565 FAD binding domain Ami103574_07040 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Ami103574_07050 PF01168 Alanine racemase, N-terminal domain Ami103574_07055 PF03668 P-loop ATPase protein family Ami103574_07060 PF05853 beta-keto acid cleavage enzyme Ami103574_07065 PF10298 WhiA N-terminal LAGLIDADG-like domain Ami103574_07065 PF14527 WhiA LAGLIDADG-like domain Ami103574_07065 PF02650 WhiA C-terminal HTH domain Ami103574_07070 PF05167 Uncharacterised ACR (DUF711) Ami103574_07080 PF06969 HemN C-terminal domain Ami103574_07080 PF04055 Radical SAM superfamily Ami103574_07090 PF03167 Uracil DNA glycosylase superfamily Ami103574_07110 PF00072 Response regulator receiver domain Ami103574_07110 PF04397 LytTr DNA-binding domain Ami103574_07120 PF00395 S-layer homology domain Ami103574_07120 PF00963 Cohesin domain Ami103574_07145 PF02397 Bacterial sugar transferase Ami103574_07150 PF13439 Glycosyltransferase Family 4 Ami103574_07150 PF00534 Glycosyl transferases group 1 Ami103574_07190 PF16363 GDP-mannose 4,6 dehydratase Ami103574_07195 PF00342 Phosphoglucose isomerase Ami103574_07215 PF01255 Putative undecaprenyl diphosphate synthase Ami103574_07220 PF13416 Bacterial extracellular solute-binding protein Ami103574_07225 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_07230 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_07235 PF00005 ABC transporter Ami103574_07235 PF08402 TOBE domain Ami103574_07240 PF00294 pfkB family carbohydrate kinase Ami103574_07245 PF03747 ADP-ribosylglycohydrolase Ami103574_07255 PF00924 Mechanosensitive ion channel Ami103574_07255 PF05552 Conserved TM helix Ami103574_07260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Ami103574_07260 PF02785 Biotin carboxylase C-terminal domain Ami103574_07260 PF02436 Conserved carboxylase domain Ami103574_07260 PF00289 Biotin carboxylase, N-terminal domain Ami103574_07260 PF00682 HMGL-like Ami103574_07260 PF00364 Biotin-requiring enzyme Ami103574_07265 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Ami103574_07265 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Ami103574_07270 PF01769 Divalent cation transporter Ami103574_07270 PF00571 CBS domain Ami103574_07270 PF03448 MgtE intracellular N domain Ami103574_07275 PF03853 YjeF-related protein N-terminus Ami103574_07275 PF01256 Carbohydrate kinase Ami103574_07280 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Ami103574_07300 PF03808 Glycosyl transferase WecB/TagA/CpsF family Ami103574_07305 PF00456 Transketolase, thiamine diphosphate binding domain Ami103574_07310 PF02780 Transketolase, C-terminal domain Ami103574_07310 PF02779 Transketolase, pyrimidine binding domain Ami103574_07320 PF04715 Anthranilate synthase component I, N terminal region Ami103574_07320 PF00425 chorismate binding enzyme Ami103574_07325 PF02885 Glycosyl transferase family, helical bundle domain Ami103574_07325 PF00117 Glutamine amidotransferase class-I Ami103574_07325 PF00591 Glycosyl transferase family, a/b domain Ami103574_07330 PF02885 Glycosyl transferase family, helical bundle domain Ami103574_07330 PF00591 Glycosyl transferase family, a/b domain Ami103574_07335 PF00218 Indole-3-glycerol phosphate synthase Ami103574_07340 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Ami103574_07345 PF00291 Pyridoxal-phosphate dependent enzyme Ami103574_07350 PF00290 Tryptophan synthase alpha chain Ami103574_07365 PF00005 ABC transporter Ami103574_07370 PF02687 FtsX-like permease family Ami103574_07370 PF18075 FtsX extracellular domain Ami103574_07375 PF04225 Opacity-associated protein A LysM-like domain Ami103574_07375 PF01551 Peptidase family M23 Ami103574_07380 PF17768 RecJ OB domain Ami103574_07380 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Ami103574_07380 PF02272 DHHA1 domain Ami103574_07380 PF01368 DHH family Ami103574_07385 PF03466 LysR substrate binding domain Ami103574_07385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_07390 PF01053 Cys/Met metabolism PLP-dependent enzyme Ami103574_07395 PF03572 Peptidase family S41 Ami103574_07395 PF17820 PDZ domain Ami103574_07395 PF01471 Putative peptidoglycan binding domain Ami103574_07400 PF06580 Histidine kinase Ami103574_07400 PF02743 Cache domain Ami103574_07400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_07400 PF00672 HAMP domain Ami103574_07405 PF12833 Helix-turn-helix domain Ami103574_07410 PF00936 BMC domain Ami103574_07415 PF02286 Dehydratase large subunit Ami103574_07420 PF02288 Dehydratase medium subunit Ami103574_07425 PF02287 Dehydratase small subunit Ami103574_07430 PF18427 DD-reactivating factor swiveling domain Ami103574_07430 PF08841 Diol dehydratase reactivase ATPase-like domain Ami103574_07435 PF02288 Dehydratase medium subunit Ami103574_07445 PF00936 BMC domain Ami103574_07450 PF06130 Phosphate propanoyltransferase Ami103574_07460 PF03319 Ethanolamine utilisation protein EutN/carboxysome Ami103574_07465 PF01923 Cobalamin adenosyltransferase Ami103574_07470 PF00171 Aldehyde dehydrogenase family Ami103574_07475 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Ami103574_07475 PF10531 SLBB domain Ami103574_07475 PF13237 4Fe-4S dicluster domain Ami103574_07475 PF13375 RnfC Barrel sandwich hybrid domain Ami103574_07490 PF00936 BMC domain Ami103574_07495 PF10662 Ethanolamine utilisation - propanediol utilisation Ami103574_07500 PF01636 Phosphotransferase enzyme family Ami103574_07505 PF01371 Trp repressor protein Ami103574_07515 PF02631 RecX family Ami103574_07530 PF00133 tRNA synthetases class I (I, L, M and V) Ami103574_07530 PF08264 Anticodon-binding domain of tRNA Ami103574_07535 PF04055 Radical SAM superfamily Ami103574_07545 PF00892 EamA-like transporter family Ami103574_07550 PF00293 NUDIX domain Ami103574_07555 PF00188 Cysteine-rich secretory protein family Ami103574_07580 PF11842 Domain of unknown function (DUF3362) Ami103574_07580 PF04055 Radical SAM superfamily Ami103574_07580 PF08497 Radical SAM N-terminal Ami103574_07585 PF01555 DNA methylase Ami103574_07590 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Ami103574_07590 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Ami103574_07595 PF00664 ABC transporter transmembrane region Ami103574_07595 PF00005 ABC transporter Ami103574_07600 PF01743 Poly A polymerase head domain Ami103574_07600 PF12627 Probable RNA and SrmB- binding site of polymerase A Ami103574_07600 PF01966 HD domain Ami103574_07610 PF02698 DUF218 domain Ami103574_07620 PF00395 S-layer homology domain Ami103574_07635 PF03853 YjeF-related protein N-terminus Ami103574_07635 PF01256 Carbohydrate kinase Ami103574_07655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_07655 PF03466 LysR substrate binding domain Ami103574_07670 PF00704 Glycosyl hydrolases family 18 Ami103574_07680 PF01743 Poly A polymerase head domain Ami103574_07680 PF13735 tRNA nucleotidyltransferase domain 2 putative Ami103574_07680 PF12627 Probable RNA and SrmB- binding site of polymerase A Ami103574_07695 PF02583 Metal-sensitive transcriptional repressor Ami103574_07700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Ami103574_07705 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_07710 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_07710 PF12911 N-terminal TM domain of oligopeptide transport permease C Ami103574_07715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Ami103574_07715 PF00005 ABC transporter Ami103574_07720 PF00005 ABC transporter Ami103574_07725 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Ami103574_07725 PF00361 Proton-conducting membrane transporter Ami103574_07725 PF13244 Domain of unknown function (DUF4040) Ami103574_07735 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Ami103574_07745 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Ami103574_07760 PF02492 CobW/HypB/UreG, nucleotide-binding domain Ami103574_07765 PF07503 HypF finger Ami103574_07765 PF01300 Telomere recombination Ami103574_07765 PF17788 HypF Kae1-like domain Ami103574_07765 PF00708 Acylphosphatase Ami103574_07770 PF01455 HupF/HypC family Ami103574_07775 PF01924 Hydrogenase formation hypA family Ami103574_07780 PF02769 AIR synthase related protein, C-terminal domain Ami103574_07780 PF00586 AIR synthase related protein, N-terminal domain Ami103574_07800 PF03575 Peptidase family S51 Ami103574_07810 PF06445 GyrI-like small molecule binding domain Ami103574_07810 PF13411 MerR HTH family regulatory protein Ami103574_07820 PF04452 RNA methyltransferase Ami103574_07825 PF01880 Desulfoferrodoxin Ami103574_07825 PF06397 Desulfoferrodoxin, N-terminal domain Ami103574_07830 PF05036 Sporulation related domain Ami103574_07830 PF01520 N-acetylmuramoyl-L-alanine amidase Ami103574_07835 PF01522 Polysaccharide deacetylase Ami103574_07865 PF00919 Uncharacterized protein family UPF0004 Ami103574_07865 PF01938 TRAM domain Ami103574_07865 PF04055 Radical SAM superfamily Ami103574_07870 PF01230 HIT domain Ami103574_07875 PF01165 Ribosomal protein S21 Ami103574_07885 PF02082 Transcriptional regulator Ami103574_07890 PF00291 Pyridoxal-phosphate dependent enzyme Ami103574_07900 PF06898 Putative stage IV sporulation protein YqfD Ami103574_07905 PF02562 PhoH-like protein Ami103574_07910 PF02130 Uncharacterized protein family UPF0054 Ami103574_07915 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Ami103574_07920 PF01926 50S ribosome-binding GTPase Ami103574_07920 PF07650 KH domain Ami103574_07930 PF00889 Elongation factor TS Ami103574_07935 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Ami103574_07935 PF03129 Anticodon binding domain Ami103574_07940 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Ami103574_07940 PF00391 PEP-utilising enzyme, mobile domain Ami103574_07940 PF02896 PEP-utilising enzyme, TIM barrel domain Ami103574_07945 PF00072 Response regulator receiver domain Ami103574_07945 PF00486 Transcriptional regulatory protein, C terminal Ami103574_07950 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_07950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_07955 PF04294 VanW like protein Ami103574_07960 PF07478 D-ala D-ala ligase C-terminus Ami103574_07960 PF01820 D-ala D-ala ligase N-terminus Ami103574_07965 PF02557 D-alanyl-D-alanine carboxypeptidase Ami103574_07975 PF00574 Clp protease Ami103574_07985 PF02690 Na+/Pi-cotransporter Ami103574_07990 PF00486 Transcriptional regulatory protein, C terminal Ami103574_07990 PF00072 Response regulator receiver domain Ami103574_07995 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_07995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_07995 PF16736 Single Cache-like Ami103574_07995 PF00989 PAS fold Ami103574_08000 PF02254 TrkA-N domain Ami103574_08000 PF00999 Sodium/hydrogen exchanger family Ami103574_08005 PF00437 Type II/IV secretion system protein Ami103574_08045 PF02954 Bacterial regulatory protein, Fis family Ami103574_08045 PF00989 PAS fold Ami103574_08045 PF00158 Sigma-54 interaction domain Ami103574_08050 PF07690 Major Facilitator Superfamily Ami103574_08055 PF04199 Putative cyclase Ami103574_08060 PF05853 beta-keto acid cleavage enzyme Ami103574_08075 PF12002 MgsA AAA+ ATPase C terminal Ami103574_08075 PF16193 AAA C-terminal domain Ami103574_08075 PF00004 ATPase family associated with various cellular activities (AAA) Ami103574_08080 PF00575 S1 RNA binding domain Ami103574_08080 PF02401 LytB protein Ami103574_08085 PF01202 Shikimate kinase Ami103574_08090 PF13476 AAA domain Ami103574_08095 PF02863 Arginine repressor, C-terminal domain Ami103574_08095 PF01316 Arginine repressor, DNA binding domain Ami103574_08100 PF02075 Crossover junction endodeoxyribonuclease RuvC Ami103574_08105 PF01330 RuvA N terminal domain Ami103574_08105 PF07499 RuvA, C-terminal domain Ami103574_08110 PF17864 RuvB AAA lid domain Ami103574_08110 PF05491 RuvB C-terminal winged helix domain Ami103574_08110 PF05496 Holliday junction DNA helicase RuvB P-loop domain Ami103574_08115 PF08486 Stage II sporulation protein Ami103574_08120 PF02547 Queuosine biosynthesis protein Ami103574_08125 PF01702 Queuine tRNA-ribosyltransferase Ami103574_08130 PF05958 tRNA (Uracil-5-)-methyltransferase Ami103574_08185 PF01965 DJ-1/PfpI family Ami103574_08195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_08195 PF03466 LysR substrate binding domain Ami103574_08200 PF07690 Major Facilitator Superfamily Ami103574_08205 PF00270 DEAD/DEAH box helicase Ami103574_08205 PF00271 Helicase conserved C-terminal domain Ami103574_08205 PF03880 DbpA RNA binding domain Ami103574_08225 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Ami103574_08225 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Ami103574_08230 PF00892 EamA-like transporter family Ami103574_08235 PF12833 Helix-turn-helix domain Ami103574_08235 PF02805 Metal binding domain of Ada Ami103574_08245 PF01037 Lrp/AsnC ligand binding domain Ami103574_08255 PF06445 GyrI-like small molecule binding domain Ami103574_08255 PF12833 Helix-turn-helix domain Ami103574_08260 PF00005 ABC transporter Ami103574_08260 PF13732 Domain of unknown function (DUF4162) Ami103574_08270 PF01624 MutS domain I Ami103574_08270 PF05192 MutS domain III Ami103574_08270 PF05190 MutS family domain IV Ami103574_08270 PF00488 MutS domain V Ami103574_08270 PF05188 MutS domain II Ami103574_08285 PF04225 Opacity-associated protein A LysM-like domain Ami103574_08285 PF01551 Peptidase family M23 Ami103574_08290 PF00395 S-layer homology domain Ami103574_08290 PF06452 Carbohydrate family 9 binding domain-like Ami103574_08290 PF00331 Glycosyl hydrolase family 10 Ami103574_08290 PF02018 Carbohydrate binding domain Ami103574_08300 PF01740 STAS domain Ami103574_08305 PF07228 Stage II sporulation protein E (SpoIIE) Ami103574_08305 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain Ami103574_08315 PF03412 Peptidase C39 family Ami103574_08315 PF00005 ABC transporter Ami103574_08315 PF00664 ABC transporter transmembrane region Ami103574_08320 PF00664 ABC transporter transmembrane region Ami103574_08320 PF00005 ABC transporter Ami103574_08320 PF03412 Peptidase C39 family Ami103574_08330 PF13411 MerR HTH family regulatory protein Ami103574_08335 PF01042 Endoribonuclease L-PSP Ami103574_08350 PF03169 OPT oligopeptide transporter protein Ami103574_08355 PF07687 Peptidase dimerisation domain Ami103574_08355 PF01546 Peptidase family M20/M25/M40 Ami103574_08370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Ami103574_08370 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami103574_08375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_08375 PF06580 Histidine kinase Ami103574_08380 PF04397 LytTr DNA-binding domain Ami103574_08380 PF00072 Response regulator receiver domain Ami103574_08390 PF00892 EamA-like transporter family Ami103574_08395 PF12833 Helix-turn-helix domain Ami103574_08395 PF02311 AraC-like ligand binding domain Ami103574_08415 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase Ami103574_08420 PF02678 Pirin Ami103574_08420 PF05726 Pirin C-terminal cupin domain Ami103574_08425 PF03193 RsgA GTPase Ami103574_08440 PF00491 Arginase family Ami103574_08445 PF03466 LysR substrate binding domain Ami103574_08445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_08470 PF00730 HhH-GPD superfamily base excision DNA repair protein Ami103574_08470 PF14815 NUDIX domain Ami103574_08475 PF17202 Single cache domain 3 Ami103574_08475 PF00672 HAMP domain Ami103574_08475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_08480 PF00672 HAMP domain Ami103574_08480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_08480 PF02203 Tar ligand binding domain homologue Ami103574_08495 PF00583 Acetyltransferase (GNAT) family Ami103574_08500 PF13597 Anaerobic ribonucleoside-triphosphate reductase Ami103574_08500 PF03477 ATP cone domain Ami103574_08505 PF04055 Radical SAM superfamily Ami103574_08510 PF00830 Ribosomal L28 family Ami103574_08525 PF00270 DEAD/DEAH box helicase Ami103574_08525 PF00271 Helicase conserved C-terminal domain Ami103574_08525 PF17191 RecG wedge domain Ami103574_08530 PF00269 Small, acid-soluble spore proteins, alpha/beta type Ami103574_08540 PF01467 Cytidylyltransferase-like Ami103574_08555 PF05636 HIGH Nucleotidyl Transferase Ami103574_08560 PF00871 Acetokinase family Ami103574_08565 PF01783 Ribosomal L32p protein family Ami103574_08580 PF00701 Dihydrodipicolinate synthetase family Ami103574_08585 PF02774 Semialdehyde dehydrogenase, dimerisation domain Ami103574_08585 PF01118 Semialdehyde dehydrogenase, NAD binding domain Ami103574_08590 PF09397 Ftsk gamma domain Ami103574_08590 PF17854 FtsK alpha domain Ami103574_08590 PF01580 FtsK/SpoIIIE family Ami103574_08600 PF00919 Uncharacterized protein family UPF0004 Ami103574_08600 PF04055 Radical SAM superfamily Ami103574_08600 PF18693 TRAM domain Ami103574_08605 PF01066 CDP-alcohol phosphatidyltransferase Ami103574_08610 PF02464 Competence-damaged protein Ami103574_08610 PF18146 Damage-inducible protein CinA KH domain Ami103574_08610 PF00994 Probable molybdopterin binding domain Ami103574_08615 PF00154 recA bacterial DNA recombination protein Ami103574_08620 PF00829 Ribosomal prokaryotic L21 protein Ami103574_08625 PF01016 Ribosomal L27 protein Ami103574_08630 PF09269 Domain of unknown function (DUF1967) Ami103574_08630 PF01926 50S ribosome-binding GTPase Ami103574_08630 PF01018 GTP1/OBG Ami103574_08645 PF04055 Radical SAM superfamily Ami103574_08645 PF06969 HemN C-terminal domain Ami103574_08655 PF10531 SLBB domain Ami103574_08665 PF05580 SpoIVB peptidase S55 Ami103574_08665 PF17820 PDZ domain Ami103574_08670 PF00072 Response regulator receiver domain Ami103574_08670 PF08769 Sporulation initiation factor Spo0A C terminal Ami103574_08675 PF00239 Resolvase, N terminal domain Ami103574_08675 PF18010 Cry35Ab1 HTH C-terminal domain Ami103574_08680 PF05979 Bacterial protein of unknown function (DUF896) Ami103574_08690 PF00266 Aminotransferase class-V Ami103574_08695 PF01592 NifU-like N terminal domain Ami103574_08725 PF01029 NusB family Ami103574_08730 PF00814 Glycoprotease family Ami103574_08735 PF13742 OB-fold nucleic acid binding domain Ami103574_08735 PF02601 Exonuclease VII, large subunit Ami103574_08740 PF02609 Exonuclease VII small subunit Ami103574_08745 PF00348 Polyprenyl synthetase Ami103574_08750 PF02779 Transketolase, pyrimidine binding domain Ami103574_08750 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Ami103574_08750 PF02780 Transketolase, C-terminal domain Ami103574_08755 PF01728 FtsJ-like methyltransferase Ami103574_08755 PF01479 S4 domain Ami103574_08760 PF00155 Aminotransferase class I and II Ami103574_08765 PF05192 MutS domain III Ami103574_08765 PF01624 MutS domain I Ami103574_08765 PF05190 MutS family domain IV Ami103574_08765 PF05188 MutS domain II Ami103574_08765 PF00488 MutS domain V Ami103574_08770 PF01119 DNA mismatch repair protein, C-terminal domain Ami103574_08770 PF08676 MutL C terminal dimerisation domain Ami103574_08780 PF00589 Phage integrase family Ami103574_08780 PF02899 Phage integrase, N-terminal SAM-like domain Ami103574_08785 PF06838 Methionine gamma-lyase Ami103574_08790 PF09335 SNARE associated Golgi protein Ami103574_08805 PF00578 AhpC/TSA family Ami103574_08810 PF01022 Bacterial regulatory protein, arsR family Ami103574_08815 PF06953 Arsenical resistance operon trans-acting repressor ArsD Ami103574_08820 PF02374 Anion-transporting ATPase Ami103574_08860 PF05569 BlaR1 peptidase M56 Ami103574_08860 PF00905 Penicillin binding protein transpeptidase domain Ami103574_08875 PF03652 Holliday junction resolvase Ami103574_08880 PF06135 IreB regulatory phosphoprotein Ami103574_08885 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Ami103574_08885 PF01411 tRNA synthetases class II (A) Ami103574_08885 PF02272 DHHA1 domain Ami103574_08895 PF06686 Stage III sporulation protein AC/AD protein family Ami103574_08915 PF01595 Cyclin M transmembrane N-terminal domain Ami103574_08915 PF03471 Transporter associated domain Ami103574_08915 PF00571 CBS domain Ami103574_08925 PF01596 O-methyltransferase Ami103574_08930 PF02618 YceG-like family Ami103574_08935 PF09285 Elongation factor P, C-terminal Ami103574_08935 PF08207 Elongation factor P (EF-P) KOW-like domain Ami103574_08935 PF01132 Elongation factor P (EF-P) OB domain Ami103574_08940 PF06133 Control of competence regulator ComK, YlbF/YmcA Ami103574_08945 PF17770 Ribonuclease J C-terminal domain Ami103574_08945 PF00753 Metallo-beta-lactamase superfamily Ami103574_08945 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Ami103574_08950 PF08264 Anticodon-binding domain of tRNA Ami103574_08950 PF00133 tRNA synthetases class I (I, L, M and V) Ami103574_08950 PF13603 Leucyl-tRNA synthetase, Domain 2 Ami103574_08950 PF09334 tRNA synthetases class I (M) Ami103574_08960 PF01966 HD domain Ami103574_08965 PF01467 Cytidylyltransferase-like Ami103574_08970 PF02938 GAD domain Ami103574_08970 PF00152 tRNA synthetases class II (D, K and N) Ami103574_08970 PF01336 OB-fold nucleic acid binding domain Ami103574_08975 PF13393 Histidyl-tRNA synthetase Ami103574_08975 PF03129 Anticodon binding domain Ami103574_08980 PF04055 Radical SAM superfamily Ami103574_08985 PF00753 Metallo-beta-lactamase superfamily Ami103574_08990 PF02580 D-Tyr-tRNA(Tyr) deacylase Ami103574_08995 PF02824 TGS domain Ami103574_08995 PF13291 ACT domain Ami103574_08995 PF04607 Region found in RelA / SpoT proteins Ami103574_09000 PF07549 SecD/SecF GG Motif Ami103574_09000 PF02355 Protein export membrane protein Ami103574_09010 PF02699 Preprotein translocase subunit Ami103574_09030 PF01121 Dephospho-CoA kinase Ami103574_09035 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Ami103574_09035 PF01367 5'-3' exonuclease, C-terminal SAM fold Ami103574_09035 PF00476 DNA polymerase family A Ami103574_09045 PF04542 Sigma-70 region 2 Ami103574_09045 PF08281 Sigma-70, region 4 Ami103574_09050 PF02811 PHP domain Ami103574_09055 PF03471 Transporter associated domain Ami103574_09055 PF00571 CBS domain Ami103574_09055 PF01595 Cyclin M transmembrane N-terminal domain Ami103574_09060 PF13411 MerR HTH family regulatory protein Ami103574_09065 PF00005 ABC transporter Ami103574_09075 PF03073 TspO/MBR family Ami103574_09080 PF01797 Transposase IS200 like Ami103574_09085 PF03576 Peptidase family S58 Ami103574_09105 PF01709 Transcriptional regulator Ami103574_09110 PF01869 BadF/BadG/BcrA/BcrD ATPase family Ami103574_09130 PF01784 NIF3 (NGG1p interacting factor 3) Ami103574_09135 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Ami103574_09140 PF04542 Sigma-70 region 2 Ami103574_09140 PF00140 Sigma-70 factor, region 1.2 Ami103574_09140 PF03979 Sigma-70 factor, region 1.1 Ami103574_09140 PF04539 Sigma-70 region 3 Ami103574_09140 PF04545 Sigma-70, region 4 Ami103574_09145 PF10410 DnaB-helicase binding domain of primase Ami103574_09145 PF08275 DNA primase catalytic core, N-terminal domain Ami103574_09145 PF01807 CHC2 zinc finger Ami103574_09150 PF01966 HD domain Ami103574_09150 PF13286 Phosphohydrolase-associated domain Ami103574_09155 PF01384 Phosphate transporter family Ami103574_09170 PF18011 C-terminal domain found in long catalases Ami103574_09170 PF06628 Catalase-related immune-responsive Ami103574_09170 PF00199 Catalase Ami103574_09175 PF02570 Precorrin-8X methylmutase Ami103574_09180 PF07685 CobB/CobQ-like glutamine amidotransferase domain Ami103574_09185 PF00155 Aminotransferase class I and II Ami103574_09190 PF03186 CobD/Cbib protein Ami103574_09195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Ami103574_09195 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Ami103574_09200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Ami103574_09205 PF01888 CbiD Ami103574_09210 PF07685 CobB/CobQ-like glutamine amidotransferase domain Ami103574_09210 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Ami103574_09215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Ami103574_09220 PF11760 Cobalamin synthesis G N-terminal Ami103574_09220 PF11761 Cobalamin biosynthesis central region Ami103574_09220 PF01890 Cobalamin synthesis G C-terminus Ami103574_09230 PF00675 Insulinase (Peptidase family M16) Ami103574_09230 PF05193 Peptidase M16 inactive domain Ami103574_09235 PF01522 Polysaccharide deacetylase Ami103574_09240 PF02018 Carbohydrate binding domain Ami103574_09240 PF06452 Carbohydrate family 9 binding domain-like Ami103574_09240 PF00395 S-layer homology domain Ami103574_09240 PF00331 Glycosyl hydrolase family 10 Ami103574_09250 PF03062 MBOAT, membrane-bound O-acyltransferase family Ami103574_09280 PF01209 ubiE/COQ5 methyltransferase family Ami103574_09285 PF00589 Phage integrase family Ami103574_09285 PF02899 Phage integrase, N-terminal SAM-like domain Ami103574_09290 PF01740 STAS domain Ami103574_09290 PF00916 Sulfate permease family Ami103574_09310 PF01145 SPFH domain / Band 7 family Ami103574_09310 PF15975 Flotillin Ami103574_09320 PF09924 Uncharacterised conserved protein (DUF2156) Ami103574_09345 PF00155 Aminotransferase class I and II Ami103574_09355 PF02673 Bacitracin resistance protein BacA Ami103574_09360 PF02535 ZIP Zinc transporter Ami103574_09370 PF00557 Metallopeptidase family M24 Ami103574_09370 PF01321 Creatinase/Prolidase N-terminal domain Ami103574_09385 PF03144 Elongation factor Tu domain 2 Ami103574_09385 PF16658 Class II release factor RF3, C-terminal domain Ami103574_09385 PF00009 Elongation factor Tu GTP binding domain Ami103574_09390 PF00072 Response regulator receiver domain Ami103574_09395 PF00082 Subtilase family Ami103574_09400 PF13476 AAA domain Ami103574_09405 PF12320 Type 5 capsule protein repressor C-terminal domain Ami103574_09405 PF00149 Calcineurin-like phosphoesterase Ami103574_09410 PF02638 Glycosyl hydrolase-like 10 Ami103574_09415 PF00578 AhpC/TSA family Ami103574_09420 PF00583 Acetyltransferase (GNAT) family Ami103574_09420 PF00795 Carbon-nitrogen hydrolase Ami103574_09435 PF01966 HD domain Ami103574_09450 PF04260 Protein of unknown function (DUF436) Ami103574_09460 PF03006 Haemolysin-III related Ami103574_09485 PF03063 Prismane/CO dehydrogenase family Ami103574_09490 PF02675 S-adenosylmethionine decarboxylase Ami103574_09495 PF17284 Spermidine synthase tetramerisation domain Ami103574_09510 PF00501 AMP-binding enzyme Ami103574_09515 PF01048 Phosphorylase superfamily Ami103574_09520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_09520 PF00672 HAMP domain Ami103574_09520 PF12729 Four helix bundle sensory module for signal transduction Ami103574_09525 PF00936 BMC domain Ami103574_09530 PF06130 Phosphate propanoyltransferase Ami103574_09535 PF00465 Iron-containing alcohol dehydrogenase Ami103574_09535 PF00171 Aldehyde dehydrogenase family Ami103574_09545 PF10531 SLBB domain Ami103574_09545 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Ami103574_09545 PF13237 4Fe-4S dicluster domain Ami103574_09545 PF13375 RnfC Barrel sandwich hybrid domain Ami103574_09550 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Ami103574_09550 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ami103574_09555 PF06100 MCRA family Ami103574_09560 PF01556 DnaJ C terminal domain Ami103574_09560 PF00226 DnaJ domain Ami103574_09560 PF00684 DnaJ central domain Ami103574_09565 PF00012 Hsp70 protein Ami103574_09570 PF01025 GrpE Ami103574_09575 PF01628 HrcA protein C terminal domain Ami103574_09580 PF00005 ABC transporter Ami103574_09585 PF12399 Branched-chain amino acid ATP-binding cassette transporter Ami103574_09585 PF00005 ABC transporter Ami103574_09590 PF11862 Domain of unknown function (DUF3382) Ami103574_09590 PF02653 Branched-chain amino acid transport system / permease component Ami103574_09595 PF02653 Branched-chain amino acid transport system / permease component Ami103574_09600 PF13458 Periplasmic binding protein Ami103574_09615 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Ami103574_09615 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Ami103574_09625 PF13443 Cro/C1-type HTH DNA-binding domain Ami103574_09640 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Ami103574_09640 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Ami103574_09650 PF06969 HemN C-terminal domain Ami103574_09650 PF04055 Radical SAM superfamily Ami103574_09665 PF06421 GTP-binding protein LepA C-terminus Ami103574_09665 PF00679 Elongation factor G C-terminus Ami103574_09665 PF03144 Elongation factor Tu domain 2 Ami103574_09665 PF00009 Elongation factor Tu GTP binding domain Ami103574_09680 PF03418 Germination protease Ami103574_09685 PF01649 Ribosomal protein S20 Ami103574_09690 PF12833 Helix-turn-helix domain Ami103574_09690 PF02311 AraC-like ligand binding domain Ami103574_09695 PF00696 Amino acid kinase family Ami103574_09700 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Ami103574_09700 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Ami103574_09710 PF17853 GGDEF-like domain Ami103574_09710 PF13556 PucR C-terminal helix-turn-helix domain Ami103574_09710 PF05651 Putative sugar diacid recognition Ami103574_09715 PF13520 Amino acid permease Ami103574_09720 PF01842 ACT domain Ami103574_09720 PF03447 Homoserine dehydrogenase, NAD binding domain Ami103574_09720 PF00742 Homoserine dehydrogenase Ami103574_09730 PF00892 EamA-like transporter family Ami103574_09745 PF01432 Peptidase family M3 Ami103574_09745 PF08439 Oligopeptidase F Ami103574_09750 PF01513 ATP-NAD kinase Ami103574_09755 PF01479 S4 domain Ami103574_09755 PF00849 RNA pseudouridylate synthase Ami103574_09760 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_09765 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Ami103574_09805 PF00535 Glycosyl transferase family 2 Ami103574_09875 PF04239 Protein of unknown function (DUF421) Ami103574_09885 PF12822 ECF transporter, substrate-specific component Ami103574_09890 PF01479 S4 domain Ami103574_09895 PF00561 alpha/beta hydrolase fold Ami103574_09895 PF08386 TAP-like protein Ami103574_09900 PF00216 Bacterial DNA-binding protein Ami103574_09905 PF03819 MazG nucleotide pyrophosphohydrolase domain Ami103574_09915 PF01979 Amidohydrolase family Ami103574_09920 PF15714 Stage V sporulation protein T C-terminal, transcription factor Ami103574_09920 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Ami103574_09925 PF03461 TRCF domain Ami103574_09925 PF02559 CarD-like/TRCF domain Ami103574_09925 PF17757 UvrB interaction domain Ami103574_09925 PF00271 Helicase conserved C-terminal domain Ami103574_09925 PF00270 DEAD/DEAH box helicase Ami103574_09930 PF01195 Peptidyl-tRNA hydrolase Ami103574_09935 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Ami103574_09935 PF14572 Phosphoribosyl synthetase-associated domain Ami103574_09940 PF00132 Bacterial transferase hexapeptide (six repeats) Ami103574_09940 PF00483 Nucleotidyl transferase Ami103574_09945 PF02875 Mur ligase family, glutamate ligase domain Ami103574_09945 PF08245 Mur ligase middle domain Ami103574_09945 PF01225 Mur ligase family, catalytic domain Ami103574_09950 PF00156 Phosphoribosyl transferase domain Ami103574_09950 PF09182 Bacterial purine repressor, N-terminal Ami103574_09955 PF04026 SpoVG Ami103574_09960 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami103574_09965 PF00085 Thioredoxin Ami103574_09980 PF01464 Transglycosylase SLT domain Ami103574_09985 PF00860 Permease family Ami103574_09990 PF01098 Cell cycle protein Ami103574_09995 PF00905 Penicillin binding protein transpeptidase domain Ami103574_10010 PF00156 Phosphoribosyl transferase domain Ami103574_10020 PF04542 Sigma-70 region 2 Ami103574_10020 PF08281 Sigma-70, region 4 Ami103574_10025 PF10417 C-terminal domain of 1-Cys peroxiredoxin Ami103574_10025 PF00578 AhpC/TSA family Ami103574_10030 PF03323 Bacillus/Clostridium GerA spore germination protein Ami103574_10040 PF08279 HTH domain Ami103574_10040 PF13280 WYL domain Ami103574_10045 PF01180 Dihydroorotate dehydrogenase Ami103574_10050 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Ami103574_10055 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Ami103574_10060 PF01979 Amidohydrolase family Ami103574_10065 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain Ami103574_10065 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain Ami103574_10070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Ami103574_10070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Ami103574_10075 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Ami103574_10075 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ami103574_10080 PF00005 ABC transporter Ami103574_10095 PF00128 Alpha amylase, catalytic domain Ami103574_10095 PF02903 Alpha amylase, N-terminal ig-like domain Ami103574_10095 PF00395 S-layer homology domain Ami103574_10120 PF00392 Bacterial regulatory proteins, gntR family Ami103574_10125 PF00005 ABC transporter Ami103574_10135 PF01276 Orn/Lys/Arg decarboxylase, major domain Ami103574_10135 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Ami103574_10140 PF07687 Peptidase dimerisation domain Ami103574_10140 PF01546 Peptidase family M20/M25/M40 Ami103574_10150 PF00392 Bacterial regulatory proteins, gntR family Ami103574_10150 PF00155 Aminotransferase class I and II Ami103574_10170 PF01625 Peptide methionine sulfoxide reductase Ami103574_10170 PF01641 SelR domain Ami103574_10180 PF00005 ABC transporter Ami103574_10210 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_10210 PF00672 HAMP domain Ami103574_10210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_10215 PF00072 Response regulator receiver domain Ami103574_10215 PF00486 Transcriptional regulatory protein, C terminal Ami103574_10220 PF00403 Heavy-metal-associated domain Ami103574_10230 PF00403 Heavy-metal-associated domain Ami103574_10240 PF00403 Heavy-metal-associated domain Ami103574_10250 PF00005 ABC transporter Ami103574_10255 PF00989 PAS fold Ami103574_10255 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_10255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_10260 PF00486 Transcriptional regulatory protein, C terminal Ami103574_10260 PF00072 Response regulator receiver domain Ami103574_10285 PF13673 Acetyltransferase (GNAT) domain Ami103574_10335 PF05525 Branched-chain amino acid transport protein Ami103574_10350 PF00933 Glycosyl hydrolase family 3 N terminal domain Ami103574_10350 PF01915 Glycosyl hydrolase family 3 C-terminal domain Ami103574_10360 PF13411 MerR HTH family regulatory protein Ami103574_10360 PF07739 TipAS antibiotic-recognition domain Ami103574_10370 PF12802 MarR family Ami103574_10385 PF13411 MerR HTH family regulatory protein Ami103574_10395 PF00005 ABC transporter Ami103574_10400 PF01032 FecCD transport family Ami103574_10405 PF01032 FecCD transport family Ami103574_10415 PF02903 Alpha amylase, N-terminal ig-like domain Ami103574_10415 PF00128 Alpha amylase, catalytic domain Ami103574_10415 PF00395 S-layer homology domain Ami103574_10430 PF00440 Bacterial regulatory proteins, tetR family Ami103574_10450 PF00027 Cyclic nucleotide-binding domain Ami103574_10460 PF05857 TraX protein Ami103574_10465 PF10706 Aminoglycoside-2''-adenylyltransferase Ami103574_10485 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ami103574_10490 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Ami103574_10490 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Ami103574_10500 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Ami103574_10520 PF03749 Sugar fermentation stimulation protein RE domain Ami103574_10520 PF17746 SfsA N-terminal OB domain Ami103574_10525 PF08543 Phosphomethylpyrimidine kinase Ami103574_10525 PF02581 Thiamine monophosphate synthase Ami103574_10530 PF13419 Haloacid dehalogenase-like hydrolase Ami103574_10535 PF02581 Thiamine monophosphate synthase Ami103574_10540 PF02110 Hydroxyethylthiazole kinase family Ami103574_10545 PF01964 Radical SAM ThiC family Ami103574_10550 PF00768 D-alanyl-D-alanine carboxypeptidase Ami103574_10550 PF07943 Penicillin-binding protein 5, C-terminal domain Ami103574_10560 PF00486 Transcriptional regulatory protein, C terminal Ami103574_10560 PF00072 Response regulator receiver domain Ami103574_10565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_10565 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_10565 PF02702 Osmosensitive K+ channel His kinase sensor domain Ami103574_10565 PF13493 Domain of unknown function (DUF4118) Ami103574_10585 PF16326 ABC transporter C-terminal domain Ami103574_10585 PF00005 ABC transporter Ami103574_10585 PF16326 ABC transporter C-terminal domain Ami103574_10585 PF12848 ABC transporter Ami103574_10585 PF00005 ABC transporter Ami103574_10585 PF12848 ABC transporter Ami103574_10590 PF00753 Metallo-beta-lactamase superfamily Ami103574_10590 PF00258 Flavodoxin Ami103574_10595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Ami103574_10595 PF02770 Acyl-CoA dehydrogenase, middle domain Ami103574_10595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Ami103574_10610 PF00324 Amino acid permease Ami103574_10615 PF00072 Response regulator receiver domain Ami103574_10615 PF08664 YcbB domain Ami103574_10620 PF18698 Histidine kinase sensor domain Ami103574_10620 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_10620 PF00989 PAS fold Ami103574_10620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_10620 PF00672 HAMP domain Ami103574_10625 PF00324 Amino acid permease Ami103574_10630 PF00171 Aldehyde dehydrogenase family Ami103574_10635 PF08245 Mur ligase middle domain Ami103574_10635 PF02875 Mur ligase family, glutamate ligase domain Ami103574_10670 PF00395 S-layer homology domain Ami103574_10680 PF01381 Helix-turn-helix Ami103574_10685 PF01381 Helix-turn-helix Ami103574_10695 PF01381 Helix-turn-helix Ami103574_10700 PF13286 Phosphohydrolase-associated domain Ami103574_10700 PF01966 HD domain Ami103574_10710 PF00817 impB/mucB/samB family Ami103574_10710 PF11799 impB/mucB/samB family C-terminal domain Ami103574_10770 PF04002 RadC-like JAB domain Ami103574_10805 PF00437 Type II/IV secretion system protein Ami103574_10930 PF00436 Single-strand binding protein family Ami103574_10955 PF17762 HTH domain found in ParB protein Ami103574_10955 PF02195 ParB-like nuclease domain Ami103574_10960 PF13614 AAA domain Ami103574_10985 PF00082 Subtilase family Ami103574_10990 PF00885 6,7-dimethyl-8-ribityllumazine synthase Ami103574_10995 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Ami103574_10995 PF00925 GTP cyclohydrolase II Ami103574_11000 PF00677 Lumazine binding domain Ami103574_11005 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Ami103574_11005 PF01872 RibD C-terminal domain Ami103574_11015 PF00390 Malic enzyme, N-terminal domain Ami103574_11015 PF03949 Malic enzyme, NAD binding domain Ami103574_11020 PF10415 Fumarase C C-terminus Ami103574_11020 PF00206 Lyase Ami103574_11025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_11025 PF03466 LysR substrate binding domain Ami103574_11035 PF03576 Peptidase family S58 Ami103574_11040 PF13520 Amino acid permease Ami103574_11045 PF00144 Beta-lactamase Ami103574_11045 PF07930 D-aminopeptidase, domain B Ami103574_11050 PF02954 Bacterial regulatory protein, Fis family Ami103574_11050 PF13426 PAS domain Ami103574_11050 PF00158 Sigma-54 interaction domain Ami103574_11055 PF00753 Metallo-beta-lactamase superfamily Ami103574_11055 PF16123 Hydroxyacylglutathione hydrolase C-terminus Ami103574_11060 PF00591 Glycosyl transferase family, a/b domain Ami103574_11060 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Ami103574_11060 PF02885 Glycosyl transferase family, helical bundle domain Ami103574_11065 PF01676 Metalloenzyme superfamily Ami103574_11075 PF02646 RmuC family Ami103574_11085 PF00378 Enoyl-CoA hydratase/isomerase Ami103574_11100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Ami103574_11100 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami103574_11105 PF10437 Bacterial lipoate protein ligase C-terminus Ami103574_11105 PF03099 Biotin/lipoate A/B protein ligase family Ami103574_11115 PF01145 SPFH domain / Band 7 family Ami103574_11125 PF04434 SWIM zinc finger Ami103574_11125 PF00176 SNF2 family N-terminal domain Ami103574_11125 PF00271 Helicase conserved C-terminal domain Ami103574_11140 PF00392 Bacterial regulatory proteins, gntR family Ami103574_11140 PF00155 Aminotransferase class I and II Ami103574_11145 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Ami103574_11145 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Ami103574_11145 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami103574_11150 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Ami103574_11150 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Ami103574_11150 PF00037 4Fe-4S binding domain Ami103574_11170 PF13567 Domain of unknown function (DUF4131) Ami103574_11170 PF00753 Metallo-beta-lactamase superfamily Ami103574_11170 PF03772 Competence protein Ami103574_11175 PF00905 Penicillin binding protein transpeptidase domain Ami103574_11175 PF00912 Transglycosylase Ami103574_11180 PF01979 Amidohydrolase family Ami103574_11185 PF03606 C4-dicarboxylate anaerobic carrier Ami103574_11190 PF02954 Bacterial regulatory protein, Fis family Ami103574_11190 PF00989 PAS fold Ami103574_11190 PF00158 Sigma-54 interaction domain Ami103574_11215 PF07451 Stage V sporulation protein AD (SpoVAD) Ami103574_11220 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Ami103574_11225 PF02545 Maf-like protein Ami103574_11235 PF03949 Malic enzyme, NAD binding domain Ami103574_11235 PF00390 Malic enzyme, N-terminal domain Ami103574_11240 PF13237 4Fe-4S dicluster domain Ami103574_11240 PF01012 Electron transfer flavoprotein domain Ami103574_11240 PF00766 Electron transfer flavoprotein FAD-binding domain Ami103574_11245 PF01012 Electron transfer flavoprotein domain Ami103574_11250 PF02770 Acyl-CoA dehydrogenase, middle domain Ami103574_11250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Ami103574_11250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Ami103574_11255 PF04545 Sigma-70, region 4 Ami103574_11255 PF04539 Sigma-70 region 3 Ami103574_11255 PF04542 Sigma-70 region 2 Ami103574_11260 PF13581 Histidine kinase-like ATPase domain Ami103574_11265 PF01740 STAS domain Ami103574_11270 PF02568 Thiamine biosynthesis protein (ThiI) Ami103574_11270 PF02926 THUMP domain Ami103574_11275 PF00266 Aminotransferase class-V Ami103574_11280 PF12072 Domain of unknown function (DUF3552) Ami103574_11280 PF00013 KH domain Ami103574_11280 PF01966 HD domain Ami103574_11285 PF01098 Cell cycle protein Ami103574_11290 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Ami103574_11315 PF04002 RadC-like JAB domain Ami103574_11325 PF04542 Sigma-70 region 2 Ami103574_11325 PF04545 Sigma-70, region 4 Ami103574_11330 PF00563 EAL domain Ami103574_11330 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_11330 PF03707 Bacterial signalling protein N terminal repeat Ami103574_11335 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_11335 PF13426 PAS domain Ami103574_11335 PF05231 MASE1 Ami103574_11335 PF00563 EAL domain Ami103574_11335 PF08447 PAS fold Ami103574_11335 PF08448 PAS fold Ami103574_11340 PF00497 Bacterial extracellular solute-binding proteins, family 3 Ami103574_11345 PF00005 ABC transporter Ami103574_11350 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_11365 PF02224 Cytidylate kinase Ami103574_11370 PF03477 ATP cone domain Ami103574_11375 PF05239 PRC-barrel domain Ami103574_11380 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Ami103574_11380 PF05697 Bacterial trigger factor protein (TF) Ami103574_11380 PF05698 Bacterial trigger factor protein (TF) C-terminus Ami103574_11385 PF04545 Sigma-70, region 4 Ami103574_11385 PF04542 Sigma-70 region 2 Ami103574_11385 PF04539 Sigma-70 region 3 Ami103574_11390 PF00701 Dihydrodipicolinate synthetase family Ami103574_11395 PF05173 Dihydrodipicolinate reductase, C-terminus Ami103574_11395 PF01113 Dihydrodipicolinate reductase, N-terminus Ami103574_11400 PF16654 Diaminopimelic acid dehydrogenase C-terminal domain Ami103574_11405 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Ami103574_11405 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami103574_11410 PF04898 Glutamate synthase central domain Ami103574_11410 PF01645 Conserved region in glutamate synthase Ami103574_11410 PF01493 GXGXG motif Ami103574_11410 PF00310 Glutamine amidotransferases class-II Ami103574_11415 PF12437 Glutamine synthetase type III N terminal Ami103574_11415 PF18318 Glutamine synthetase C-terminal domain Ami103574_11415 PF00120 Glutamine synthetase, catalytic domain Ami103574_11425 PF04545 Sigma-70, region 4 Ami103574_11425 PF04542 Sigma-70 region 2 Ami103574_11435 PF00453 Ribosomal protein L20 Ami103574_11440 PF01632 Ribosomal protein L35 Ami103574_11445 PF00707 Translation initiation factor IF-3, C-terminal domain Ami103574_11445 PF05198 Translation initiation factor IF-3, N-terminal domain Ami103574_11450 PF00717 Peptidase S24-like Ami103574_11450 PF01726 LexA DNA binding domain Ami103574_11460 PF07724 AAA domain (Cdc48 subfamily) Ami103574_11460 PF10431 C-terminal, D2-small domain, of ClpB protein Ami103574_11460 PF06689 ClpX C4-type zinc finger Ami103574_11465 PF04122 Putative cell wall binding repeat 2 Ami103574_11465 PF01520 N-acetylmuramoyl-L-alanine amidase Ami103574_11470 PF13638 PIN domain Ami103574_11470 PF02562 PhoH-like protein Ami103574_11475 PF01520 N-acetylmuramoyl-L-alanine amidase Ami103574_11475 PF05036 Sporulation related domain Ami103574_11485 PF00805 Pentapeptide repeats (8 copies) Ami103574_11500 PF12704 MacB-like periplasmic core domain Ami103574_11500 PF00005 ABC transporter Ami103574_11500 PF02687 FtsX-like permease family Ami103574_11520 PF00005 ABC transporter Ami103574_11525 PF00005 ABC transporter Ami103574_11525 PF12704 MacB-like periplasmic core domain Ami103574_11525 PF02687 FtsX-like permease family Ami103574_11530 PF02687 FtsX-like permease family Ami103574_11530 PF00005 ABC transporter Ami103574_11530 PF12704 MacB-like periplasmic core domain Ami103574_11540 PF10634 Fe2+ transport protein Ami103574_11545 PF03239 Iron permease FTR1 family Ami103574_11550 PF00155 Aminotransferase class I and II Ami103574_11550 PF00392 Bacterial regulatory proteins, gntR family Ami103574_11555 PF00403 Heavy-metal-associated domain Ami103574_11560 PF01022 Bacterial regulatory protein, arsR family Ami103574_11580 PF01066 CDP-alcohol phosphatidyltransferase Ami103574_11585 PF00465 Iron-containing alcohol dehydrogenase Ami103574_11590 PF00376 MerR family regulatory protein Ami103574_11590 PF09278 MerR, DNA binding Ami103574_11605 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_11605 PF13426 PAS domain Ami103574_11605 PF05231 MASE1 Ami103574_11605 PF08448 PAS fold Ami103574_11605 PF08447 PAS fold Ami103574_11605 PF00563 EAL domain Ami103574_11610 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_11610 PF17156 Gammaproteobacterial periplasmic sensor domain Ami103574_11615 PF03129 Anticodon binding domain Ami103574_11615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Ami103574_11615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Ami103574_11615 PF02824 TGS domain Ami103574_11620 PF02277 Phosphoribosyltransferase Ami103574_11675 PF00005 ABC transporter Ami103574_11675 PF12848 ABC transporter Ami103574_11700 PF00072 Response regulator receiver domain Ami103574_11700 PF00486 Transcriptional regulatory protein, C terminal Ami103574_11705 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain Ami103574_11705 PF17203 Single cache domain 3 Ami103574_11705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_11705 PF00989 PAS fold Ami103574_11710 PF03551 Transcriptional regulator PadR-like family Ami103574_11715 PF01098 Cell cycle protein Ami103574_11725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_11725 PF03466 LysR substrate binding domain Ami103574_11730 PF03601 Conserved hypothetical protein 698 Ami103574_11735 PF00936 BMC domain Ami103574_11740 PF00834 Ribulose-phosphate 3 epimerase family Ami103574_11745 PF03193 RsgA GTPase Ami103574_11745 PF16745 RsgA N-terminal domain Ami103574_11750 PF03793 PASTA domain Ami103574_11750 PF00069 Protein kinase domain Ami103574_11760 PF01189 16S rRNA methyltransferase RsmB/F Ami103574_11760 PF01029 NusB family Ami103574_11765 PF04298 Putative neutral zinc metallopeptidase Ami103574_11770 PF02911 Formyl transferase, C-terminal domain Ami103574_11770 PF00551 Formyl transferase Ami103574_11775 PF01327 Polypeptide deformylase Ami103574_11780 PF18074 Primosomal protein N C-terminal domain Ami103574_11780 PF04851 Type III restriction enzyme, res subunit Ami103574_11780 PF17764 3′ DNA-binding domain (3′BD) Ami103574_11780 PF00271 Helicase conserved C-terminal domain Ami103574_11780 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Ami103574_11785 PF02677 Epoxyqueuosine reductase QueH Ami103574_11790 PF16199 Radical_SAM C-terminal domain Ami103574_11790 PF04055 Radical SAM superfamily Ami103574_11795 PF00265 Thymidine kinase Ami103574_11935 PF09186 Domain of unknown function (DUF1949) Ami103574_11935 PF01205 Uncharacterized protein family UPF0029 Ami103574_11940 PF01926 50S ribosome-binding GTPase Ami103574_11940 PF16360 GTP-binding GTPase Middle Region Ami103574_11940 PF13167 GTP-binding GTPase N-terminal Ami103574_11950 PF08222 CodY helix-turn-helix domain Ami103574_11950 PF06018 CodY GAF-like domain Ami103574_11955 PF10431 C-terminal, D2-small domain, of ClpB protein Ami103574_11955 PF07724 AAA domain (Cdc48 subfamily) Ami103574_11955 PF00004 ATPase family associated with various cellular activities (AAA) Ami103574_11960 PF00227 Proteasome subunit Ami103574_11965 PF01396 Topoisomerase DNA binding C4 zinc finger Ami103574_11965 PF01751 Toprim domain Ami103574_11965 PF01131 DNA topoisomerase Ami103574_11970 PF02481 DNA recombination-mediator protein A Ami103574_11975 PF01078 Magnesium chelatase, subunit ChlI Ami103574_11975 PF13335 Magnesium chelatase, subunit ChlI C-terminal Ami103574_11980 PF02021 Uncharacterised protein family UPF0102 Ami103574_11985 PF00707 Translation initiation factor IF-3, C-terminal domain Ami103574_11985 PF05198 Translation initiation factor IF-3, N-terminal domain Ami103574_12000 PF00753 Metallo-beta-lactamase superfamily Ami103574_12005 PF02080 TrkA-C domain Ami103574_12005 PF00999 Sodium/hydrogen exchanger family Ami103574_12005 PF02254 TrkA-N domain Ami103574_12010 PF02386 Cation transport protein Ami103574_12015 PF02386 Cation transport protein Ami103574_12020 PF00571 CBS domain Ami103574_12025 PF00575 S1 RNA binding domain Ami103574_12025 PF17876 Cold shock domain Ami103574_12025 PF08206 Ribonuclease B OB domain Ami103574_12025 PF00773 RNB domain Ami103574_12035 PF01063 Amino-transferase class IV Ami103574_12040 PF03030 Inorganic H+ pyrophosphatase Ami103574_12045 PF03840 Preprotein translocase SecG subunit Ami103574_12050 PF03952 Enolase, N-terminal domain Ami103574_12050 PF00113 Enolase, C-terminal TIM barrel domain Ami103574_12055 PF00121 Triosephosphate isomerase Ami103574_12060 PF00162 Phosphoglycerate kinase Ami103574_12065 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Ami103574_12065 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Ami103574_12070 PF04963 Sigma-54 factor, core binding domain Ami103574_12070 PF00309 Sigma-54 factor, Activator interacting domain (AID) Ami103574_12070 PF04552 Sigma-54, DNA binding domain Ami103574_12075 PF00588 SpoU rRNA Methylase family Ami103574_12080 PF01842 ACT domain Ami103574_12080 PF00742 Homoserine dehydrogenase Ami103574_12080 PF03447 Homoserine dehydrogenase, NAD binding domain Ami103574_12085 PF07516 SecA Wing and Scaffold domain Ami103574_12085 PF07517 SecA DEAD-like domain Ami103574_12085 PF01043 SecA preprotein cross-linking domain Ami103574_12085 PF02810 SEC-C motif Ami103574_12095 PF04055 Radical SAM superfamily Ami103574_12095 PF06968 Biotin and Thiamin Synthesis associated domain Ami103574_12110 PF02310 B12 binding domain Ami103574_12110 PF02607 B12 binding domain Ami103574_12120 PF06253 Trimethylamine methyltransferase (MTTB) Ami103574_12125 PF06253 Trimethylamine methyltransferase (MTTB) Ami103574_12130 PF02310 B12 binding domain Ami103574_12130 PF02607 B12 binding domain Ami103574_12135 PF02311 AraC-like ligand binding domain Ami103574_12135 PF12833 Helix-turn-helix domain Ami103574_12145 PF00936 BMC domain Ami103574_12155 PF12729 Four helix bundle sensory module for signal transduction Ami103574_12155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_12155 PF00672 HAMP domain Ami103574_12160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_12160 PF00672 HAMP domain Ami103574_12160 PF02203 Tar ligand binding domain homologue Ami103574_12180 PF00589 Phage integrase family Ami103574_12180 PF02899 Phage integrase, N-terminal SAM-like domain Ami103574_12185 PF01420 Type I restriction modification DNA specificity domain Ami103574_12190 PF02384 N-6 DNA Methylase Ami103574_12200 PF08447 PAS fold Ami103574_12200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_12210 PF10576 Iron-sulfur binding domain of endonuclease III Ami103574_12210 PF00633 Helix-hairpin-helix motif Ami103574_12210 PF00730 HhH-GPD superfamily base excision DNA repair protein Ami103574_12240 PF00330 Aconitase family (aconitate hydratase) Ami103574_12245 PF00180 Isocitrate/isopropylmalate dehydrogenase Ami103574_12245 PF18324 Hypothetical protein TT1725 Ami103574_12250 PF00392 Bacterial regulatory proteins, gntR family Ami103574_12250 PF07729 FCD domain Ami103574_12255 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Ami103574_12255 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Ami103574_12260 PF13393 Histidyl-tRNA synthetase Ami103574_12265 PF01634 ATP phosphoribosyltransferase Ami103574_12270 PF00815 Histidinol dehydrogenase Ami103574_12275 PF00155 Aminotransferase class I and II Ami103574_12280 PF00475 Imidazoleglycerol-phosphate dehydratase Ami103574_12285 PF00117 Glutamine amidotransferase class-I Ami103574_12290 PF00977 Histidine biosynthesis protein Ami103574_12295 PF00977 Histidine biosynthesis protein Ami103574_12300 PF01502 Phosphoribosyl-AMP cyclohydrolase Ami103574_12300 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Ami103574_12310 PF01381 Helix-turn-helix Ami103574_12315 PF00365 Phosphofructokinase Ami103574_12320 PF02811 PHP domain Ami103574_12320 PF14579 Helix-hairpin-helix motif Ami103574_12320 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Ami103574_12320 PF01336 OB-fold nucleic acid binding domain Ami103574_12320 PF07733 Bacterial DNA polymerase III alpha NTPase domain Ami103574_12325 PF03606 C4-dicarboxylate anaerobic carrier Ami103574_12330 PF10662 Ethanolamine utilisation - propanediol utilisation Ami103574_12335 PF00936 BMC domain Ami103574_12340 PF03030 Inorganic H+ pyrophosphatase Ami103574_12345 PF00324 Amino acid permease Ami103574_12350 PF02424 ApbE family Ami103574_12375 PF00348 Polyprenyl synthetase Ami103574_12380 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami103574_12445 PF02903 Alpha amylase, N-terminal ig-like domain Ami103574_12445 PF00395 S-layer homology domain Ami103574_12445 PF00128 Alpha amylase, catalytic domain Ami103574_12465 PF07728 AAA domain (dynein-related subfamily) Ami103574_12480 PF00155 Aminotransferase class I and II Ami103574_12485 PF02423 Ornithine cyclodeaminase/mu-crystallin family Ami103574_12490 PF17853 GGDEF-like domain Ami103574_12490 PF13556 PucR C-terminal helix-turn-helix domain Ami103574_12490 PF05651 Putative sugar diacid recognition Ami103574_12495 PF13411 MerR HTH family regulatory protein Ami103574_12495 PF06445 GyrI-like small molecule binding domain Ami103574_12500 PF01980 tRNA-methyltransferase O Ami103574_12500 PF18389 TrmO C-terminal domain Ami103574_12505 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Ami103574_12510 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Ami103574_12515 PF07690 Major Facilitator Superfamily Ami103574_12525 PF09278 MerR, DNA binding Ami103574_12525 PF00376 MerR family regulatory protein Ami103574_12530 PF02915 Rubrerythrin Ami103574_12565 PF13187 4Fe-4S dicluster domain Ami103574_12565 PF04055 Radical SAM superfamily Ami103574_12570 PF01228 Glycine radical Ami103574_12570 PF02901 Pyruvate formate lyase-like Ami103574_12575 PF12833 Helix-turn-helix domain Ami103574_12575 PF10114 Sensory domain found in PocR Ami103574_12600 PF01739 CheR methyltransferase, SAM binding domain Ami103574_12610 PF00919 Uncharacterized protein family UPF0004 Ami103574_12610 PF04055 Radical SAM superfamily Ami103574_12610 PF01938 TRAM domain Ami103574_12615 PF03485 Arginyl tRNA synthetase N terminal domain Ami103574_12615 PF05746 DALR anticodon binding domain Ami103574_12615 PF00750 tRNA synthetases class I (R) Ami103574_12620 PF04463 Protein of unknown function (DUF523) Ami103574_12625 PF01713 Smr domain Ami103574_12625 PF00488 MutS domain V Ami103574_12630 PF05164 Cell division protein ZapA Ami103574_12635 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Ami103574_12635 PF01588 Putative tRNA binding domain Ami103574_12635 PF03147 Ferredoxin-fold anticodon binding domain Ami103574_12635 PF03483 B3/4 domain Ami103574_12635 PF03484 tRNA synthetase B5 domain Ami103574_12640 PF01409 tRNA synthetases class II core domain (F) Ami103574_12640 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Ami103574_12645 PF08032 RNA 2'-O ribose methyltransferase substrate binding Ami103574_12645 PF00588 SpoU rRNA Methylase family Ami103574_12650 PF12327 FtsZ family, C-terminal domain Ami103574_12650 PF00091 Tubulin/FtsZ family, GTPase domain Ami103574_12655 PF06947 Protein of unknown function (DUF1290) Ami103574_12675 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Ami103574_12680 PF04101 Glycosyltransferase family 28 C-terminal domain Ami103574_12680 PF03033 Glycosyltransferase family 28 N-terminal domain Ami103574_12685 PF01098 Cell cycle protein Ami103574_12690 PF02875 Mur ligase family, glutamate ligase domain Ami103574_12690 PF08245 Mur ligase middle domain Ami103574_12695 PF00953 Glycosyl transferase family 4 Ami103574_12700 PF08245 Mur ligase middle domain Ami103574_12700 PF01225 Mur ligase family, catalytic domain Ami103574_12700 PF02875 Mur ligase family, glutamate ligase domain Ami103574_12705 PF01225 Mur ligase family, catalytic domain Ami103574_12705 PF08245 Mur ligase middle domain Ami103574_12705 PF02875 Mur ligase family, glutamate ligase domain Ami103574_12710 PF03717 Penicillin-binding Protein dimerisation domain Ami103574_12710 PF03793 PASTA domain Ami103574_12710 PF00905 Penicillin binding protein transpeptidase domain Ami103574_12720 PF01795 MraW methylase family Ami103574_12725 PF02381 MraZ protein, putative antitoxin-like Ami103574_12740 PF09084 NMT1/THI5 like Ami103574_12745 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_12750 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_12755 PF00005 ABC transporter Ami103574_12760 PF00291 Pyridoxal-phosphate dependent enzyme Ami103574_12765 PF00899 ThiF family Ami103574_12770 PF01791 DeoC/LacD family aldolase Ami103574_12780 PF06071 Protein of unknown function (DUF933) Ami103574_12780 PF01926 50S ribosome-binding GTPase Ami103574_12785 PF01790 Prolipoprotein diacylglyceryl transferase Ami103574_12795 PF18277 AbrB C-terminal domain Ami103574_12795 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Ami103574_12815 PF05175 Methyltransferase small domain Ami103574_12820 PF04468 PSP1 C-terminal conserved region Ami103574_12825 PF09115 DNA polymerase III, delta subunit, C terminal Ami103574_12830 PF02223 Thymidylate kinase Ami103574_12860 PF04055 Radical SAM superfamily Ami103574_12870 PF01594 AI-2E family transporter Ami103574_12885 PF07729 FCD domain Ami103574_12885 PF00392 Bacterial regulatory proteins, gntR family Ami103574_12895 PF13520 Amino acid permease Ami103574_12900 PF02142 MGS-like domain Ami103574_12900 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Ami103574_12900 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Ami103574_12905 PF00117 Glutamine amidotransferase class-I Ami103574_12905 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Ami103574_12915 PF00689 Cation transporting ATPase, C-terminus Ami103574_12915 PF00690 Cation transporter/ATPase, N-terminus Ami103574_12920 PF02926 THUMP domain Ami103574_12920 PF01170 Putative RNA methylase family UPF0020 Ami103574_12935 PF01522 Polysaccharide deacetylase Ami103574_12955 PF12116 Stage III sporulation protein D Ami103574_12960 PF00563 EAL domain Ami103574_12960 PF13426 PAS domain Ami103574_12960 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_12970 PF01212 Beta-eliminating lyase Ami103574_12980 PF00072 Response regulator receiver domain Ami103574_12985 PF00132 Bacterial transferase hexapeptide (six repeats) Ami103574_12990 PF13407 Periplasmic binding protein domain Ami103574_12995 PF02653 Branched-chain amino acid transport system / permease component Ami103574_13000 PF00005 ABC transporter Ami103574_13005 PF05025 RbsD / FucU transport protein family Ami103574_13010 PF00356 Bacterial regulatory proteins, lacI family Ami103574_13030 PF00857 Isochorismatase family Ami103574_13035 PF00324 Amino acid permease Ami103574_13040 PF00158 Sigma-54 interaction domain Ami103574_13040 PF02954 Bacterial regulatory protein, Fis family Ami103574_13040 PF00072 Response regulator receiver domain Ami103574_13045 PF00989 PAS fold Ami103574_13045 PF13426 PAS domain Ami103574_13045 PF13188 PAS domain Ami103574_13045 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_13045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_13050 PF00350 Dynamin family Ami103574_13060 PF07690 Major Facilitator Superfamily Ami103574_13080 PF05816 Toxic anion resistance protein (TelA) Ami103574_13090 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Ami103574_13090 PF06827 Zinc finger found in FPG and IleRS Ami103574_13090 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Ami103574_13100 PF00403 Heavy-metal-associated domain Ami103574_13105 PF07690 Major Facilitator Superfamily Ami103574_13120 PF00152 tRNA synthetases class II (D, K and N) Ami103574_13120 PF01336 OB-fold nucleic acid binding domain Ami103574_13125 PF01208 Uroporphyrinogen decarboxylase (URO-D) Ami103574_13135 PF17158 Membrane-associated sensor, integral membrane domain Ami103574_13135 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_13155 PF01668 SmpB protein Ami103574_13160 PF10502 Signal peptidase, peptidase S26 Ami103574_13165 PF10502 Signal peptidase, peptidase S26 Ami103574_13170 PF00849 RNA pseudouridylate synthase Ami103574_13170 PF01479 S4 domain Ami103574_13190 PF01116 Fructose-bisphosphate aldolase class-II Ami103574_13210 PF00210 Ferritin-like domain Ami103574_13215 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Ami103574_13215 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain Ami103574_13215 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Ami103574_13220 PF17760 UvrA interaction domain Ami103574_13220 PF17755 UvrA DNA-binding domain Ami103574_13225 PF02151 UvrB/uvrC motif Ami103574_13225 PF04851 Type III restriction enzyme, res subunit Ami103574_13225 PF12344 Ultra-violet resistance protein B Ami103574_13225 PF00271 Helicase conserved C-terminal domain Ami103574_13225 PF17757 UvrB interaction domain Ami103574_13230 PF00285 Citrate synthase, C-terminal domain Ami103574_13240 PF12833 Helix-turn-helix domain Ami103574_13240 PF14525 AraC-binding-like domain Ami103574_13260 PF00005 ABC transporter Ami103574_13265 PF10371 Domain of unknown function Ami103574_13265 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Ami103574_13265 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Ami103574_13265 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Ami103574_13265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ami103574_13280 PF02132 RecR protein Ami103574_13280 PF13662 Toprim domain Ami103574_13285 PF02575 YbaB/EbfC DNA-binding family Ami103574_13290 PF12169 DNA polymerase III subunits gamma and tau domain III Ami103574_13300 PF00117 Glutamine amidotransferase class-I Ami103574_13300 PF03352 Methyladenine glycosylase Ami103574_13300 PF00958 GMP synthase C terminal domain Ami103574_13300 PF13302 Acetyltransferase (GNAT) domain Ami103574_13300 PF13673 Acetyltransferase (GNAT) domain Ami103574_13320 PF12826 Helix-hairpin-helix motif Ami103574_13320 PF03120 NAD-dependent DNA ligase OB-fold domain Ami103574_13320 PF01653 NAD-dependent DNA ligase adenylation domain Ami103574_13320 PF00533 BRCA1 C Terminus (BRCT) domain Ami103574_13325 PF00580 UvrD/REP helicase N-terminal domain Ami103574_13325 PF13361 UvrD-like helicase C-terminal domain Ami103574_13330 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Ami103574_13330 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Ami103574_13335 PF06968 Biotin and Thiamin Synthesis associated domain Ami103574_13335 PF04055 Radical SAM superfamily Ami103574_13345 PF00005 ABC transporter Ami103574_13355 PF00936 BMC domain Ami103574_13360 PF00465 Iron-containing alcohol dehydrogenase Ami103574_13360 PF00171 Aldehyde dehydrogenase family Ami103574_13365 PF00936 BMC domain Ami103574_13385 PF10662 Ethanolamine utilisation - propanediol utilisation Ami103574_13390 PF00936 BMC domain Ami103574_13395 PF13187 4Fe-4S dicluster domain Ami103574_13395 PF04055 Radical SAM superfamily Ami103574_13400 PF01228 Glycine radical Ami103574_13400 PF02901 Pyruvate formate lyase-like Ami103574_13405 PF00230 Major intrinsic protein Ami103574_13410 PF00936 BMC domain Ami103574_13415 PF00672 HAMP domain Ami103574_13415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_13415 PF02743 Cache domain Ami103574_13415 PF06580 Histidine kinase Ami103574_13420 PF12833 Helix-turn-helix domain Ami103574_13420 PF00072 Response regulator receiver domain Ami103574_13425 PF04227 Indigoidine synthase A like protein Ami103574_13430 PF12850 Calcineurin-like phosphoesterase superfamily domain Ami103574_13435 PF00009 Elongation factor Tu GTP binding domain Ami103574_13435 PF03143 Elongation factor Tu C-terminal domain Ami103574_13435 PF03144 Elongation factor Tu domain 2 Ami103574_13440 PF03144 Elongation factor Tu domain 2 Ami103574_13440 PF14492 Elongation Factor G, domain II Ami103574_13440 PF03764 Elongation factor G, domain IV Ami103574_13440 PF00679 Elongation factor G C-terminus Ami103574_13440 PF00009 Elongation factor Tu GTP binding domain Ami103574_13445 PF00177 Ribosomal protein S7p/S5e Ami103574_13450 PF00164 Ribosomal protein S12/S23 Ami103574_13455 PF04998 RNA polymerase Rpb1, domain 5 Ami103574_13455 PF04997 RNA polymerase Rpb1, domain 1 Ami103574_13455 PF05000 RNA polymerase Rpb1, domain 4 Ami103574_13455 PF04983 RNA polymerase Rpb1, domain 3 Ami103574_13455 PF00623 RNA polymerase Rpb1, domain 2 Ami103574_13460 PF04561 RNA polymerase Rpb2, domain 2 Ami103574_13460 PF04565 RNA polymerase Rpb2, domain 3 Ami103574_13460 PF10385 RNA polymerase beta subunit external 1 domain Ami103574_13460 PF00562 RNA polymerase Rpb2, domain 6 Ami103574_13460 PF04560 RNA polymerase Rpb2, domain 7 Ami103574_13460 PF04563 RNA polymerase beta subunit Ami103574_13465 PF00542 Ribosomal protein L7/L12 C-terminal domain Ami103574_13465 PF16320 Ribosomal protein L7/L12 dimerisation domain Ami103574_13470 PF00466 Ribosomal protein L10 Ami103574_13475 PF00687 Ribosomal protein L1p/L10e family Ami103574_13480 PF03946 Ribosomal protein L11, N-terminal domain Ami103574_13480 PF00298 Ribosomal protein L11, RNA binding domain Ami103574_13485 PF02357 Transcription termination factor nusG Ami103574_13485 PF00467 KOW motif Ami103574_13490 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Ami103574_13495 PF00471 Ribosomal protein L33 Ami103574_13510 PF03062 MBOAT, membrane-bound O-acyltransferase family Ami103574_13525 PF03143 Elongation factor Tu C-terminal domain Ami103574_13525 PF03144 Elongation factor Tu domain 2 Ami103574_13525 PF00009 Elongation factor Tu GTP binding domain Ami103574_13535 PF08281 Sigma-70, region 4 Ami103574_13535 PF04542 Sigma-70 region 2 Ami103574_13540 PF08032 RNA 2'-O ribose methyltransferase substrate binding Ami103574_13540 PF00588 SpoU rRNA Methylase family Ami103574_13545 PF00186 Dihydrofolate reductase Ami103574_13550 PF00303 Thymidylate synthase Ami103574_13555 PF00636 Ribonuclease III domain Ami103574_13560 PF09190 DALR domain Ami103574_13560 PF01406 tRNA synthetases class I (C) catalytic domain Ami103574_13570 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Ami103574_13575 PF00293 NUDIX domain Ami103574_13580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Ami103574_13580 PF04073 Aminoacyl-tRNA editing domain Ami103574_13580 PF03129 Anticodon binding domain Ami103574_13585 PF02542 YgbB family Ami103574_13585 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Ami103574_13595 PF02559 CarD-like/TRCF domain Ami103574_13600 PF00690 Cation transporter/ATPase, N-terminus Ami103574_13600 PF00689 Cation transporting ATPase, C-terminus Ami103574_13605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_13605 PF16736 Single Cache-like Ami103574_13605 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_13605 PF00989 PAS fold Ami103574_13610 PF00486 Transcriptional regulatory protein, C terminal Ami103574_13610 PF00072 Response regulator receiver domain Ami103574_13615 PF13520 Amino acid permease Ami103574_13620 PF00498 FHA domain Ami103574_13620 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_13620 PF00563 EAL domain Ami103574_13630 PF18073 Rubredoxin metal binding domain Ami103574_13635 PF14492 Elongation Factor G, domain II Ami103574_13635 PF03144 Elongation factor Tu domain 2 Ami103574_13635 PF00009 Elongation factor Tu GTP binding domain Ami103574_13635 PF03764 Elongation factor G, domain IV Ami103574_13635 PF00679 Elongation factor G C-terminus Ami103574_13640 PF00710 Asparaginase, N-terminal Ami103574_13640 PF17763 Glutaminase/Asparaginase C-terminal domain Ami103574_13645 PF00152 tRNA synthetases class II (D, K and N) Ami103574_13645 PF01336 OB-fold nucleic acid binding domain Ami103574_13660 PF00368 Hydroxymethylglutaryl-coenzyme A reductase Ami103574_13675 PF02954 Bacterial regulatory protein, Fis family Ami103574_13675 PF00072 Response regulator receiver domain Ami103574_13675 PF00158 Sigma-54 interaction domain Ami103574_13695 PF02086 D12 class N6 adenine-specific DNA methyltransferase Ami103574_13700 PF00152 tRNA synthetases class II (D, K and N) Ami103574_13700 PF01336 OB-fold nucleic acid binding domain Ami103574_13705 PF01272 Transcription elongation factor, GreA/GreB, C-term Ami103574_13705 PF03449 Transcription elongation factor, N-terminal Ami103574_13710 PF06965 Na+/H+ antiporter 1 Ami103574_13715 PF02915 Rubrerythrin Ami103574_13725 PF01207 Dihydrouridine synthase (Dus) Ami103574_13730 PF03309 Type III pantothenate kinase Ami103574_13740 PF00364 Biotin-requiring enzyme Ami103574_13750 PF01039 Carboxyl transferase domain Ami103574_13760 PF06018 CodY GAF-like domain Ami103574_13760 PF17853 GGDEF-like domain Ami103574_13760 PF13556 PucR C-terminal helix-turn-helix domain Ami103574_13765 PF17862 AAA+ lid domain Ami103574_13765 PF01434 Peptidase family M41 Ami103574_13765 PF00004 ATPase family associated with various cellular activities (AAA) Ami103574_13770 PF11734 TilS substrate C-terminal domain Ami103574_13770 PF01171 PP-loop family Ami103574_13775 PF12848 ABC transporter Ami103574_13775 PF00005 ABC transporter Ami103574_13775 PF16326 ABC transporter C-terminal domain Ami103574_13780 PF12729 Four helix bundle sensory module for signal transduction Ami103574_13780 PF00672 HAMP domain Ami103574_13780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_13825 PF01943 Polysaccharide biosynthesis protein Ami103574_13825 PF14667 Polysaccharide biosynthesis C-terminal domain Ami103574_13845 PF05569 BlaR1 peptidase M56 Ami103574_13845 PF00905 Penicillin binding protein transpeptidase domain Ami103574_13860 PF07228 Stage II sporulation protein E (SpoIIE) Ami103574_13870 PF01026 TatD related DNase Ami103574_13885 PF00672 HAMP domain Ami103574_13885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_13885 PF02203 Tar ligand binding domain homologue Ami103574_13900 PF01588 Putative tRNA binding domain Ami103574_13900 PF09334 tRNA synthetases class I (M) Ami103574_13900 PF08264 Anticodon-binding domain of tRNA Ami103574_13910 PF02632 BioY family Ami103574_13915 PF02237 Biotin protein ligase C terminal domain Ami103574_13915 PF03099 Biotin/lipoate A/B protein ligase family Ami103574_13915 PF08279 HTH domain Ami103574_13930 PF04072 Leucine carboxyl methyltransferase Ami103574_13940 PF08279 HTH domain Ami103574_13940 PF13280 WYL domain Ami103574_13950 PF01169 Uncharacterized protein family UPF0016 Ami103574_13965 PF00005 ABC transporter Ami103574_13980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_13980 PF03466 LysR substrate binding domain Ami103574_13995 PF04397 LytTr DNA-binding domain Ami103574_13995 PF00072 Response regulator receiver domain Ami103574_14005 PF02654 Cobalamin-5-phosphate synthase Ami103574_14015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami103574_14015 PF03466 LysR substrate binding domain Ami103574_14035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Ami103574_14050 PF02653 Branched-chain amino acid transport system / permease component Ami103574_14055 PF02653 Branched-chain amino acid transport system / permease component Ami103574_14055 PF11862 Domain of unknown function (DUF3382) Ami103574_14060 PF00005 ABC transporter Ami103574_14060 PF12399 Branched-chain amino acid ATP-binding cassette transporter Ami103574_14065 PF00005 ABC transporter Ami103574_14075 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Ami103574_14075 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Ami103574_14075 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Ami103574_14075 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Ami103574_14085 PF02742 Iron dependent repressor, metal binding and dimerisation domain Ami103574_14085 PF01325 Iron dependent repressor, N-terminal DNA binding domain Ami103574_14085 PF18357 Diphteria toxin repressor SH3 domain Ami103574_14095 PF00183 Hsp90 protein Ami103574_14100 PF00380 Ribosomal protein S9/S16 Ami103574_14105 PF00572 Ribosomal protein L13 Ami103574_14115 PF01177 Asp/Glu/Hydantoin racemase Ami103574_14120 PF03577 Peptidase family C69 Ami103574_14135 PF01381 Helix-turn-helix Ami103574_14140 PF03180 NLPA lipoprotein Ami103574_14145 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_14150 PF09383 NIL domain Ami103574_14150 PF00005 ABC transporter Ami103574_14155 PF00672 HAMP domain Ami103574_14155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_14155 PF02743 Cache domain Ami103574_14160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_14160 PF00672 HAMP domain Ami103574_14160 PF02743 Cache domain Ami103574_14165 PF01554 MatE Ami103574_14170 PF04073 Aminoacyl-tRNA editing domain Ami103574_14175 PF00403 Heavy-metal-associated domain Ami103574_14180 PF02583 Metal-sensitive transcriptional repressor Ami103574_14185 PF01638 HxlR-like helix-turn-helix Ami103574_14195 PF01594 AI-2E family transporter Ami103574_14210 PF01048 Phosphorylase superfamily Ami103574_14215 PF01420 Type I restriction modification DNA specificity domain Ami103574_14220 PF00491 Arginase family Ami103574_14225 PF13520 Amino acid permease Ami103574_14230 PF00158 Sigma-54 interaction domain Ami103574_14230 PF13426 PAS domain Ami103574_14230 PF02954 Bacterial regulatory protein, Fis family Ami103574_14240 PF03551 Transcriptional regulator PadR-like family Ami103574_14265 PF01144 Coenzyme A transferase Ami103574_14270 PF01144 Coenzyme A transferase Ami103574_14275 PF07690 Major Facilitator Superfamily Ami103574_14280 PF08502 LeuA allosteric (dimerisation) domain Ami103574_14280 PF00682 HMGL-like Ami103574_14290 PF00158 Sigma-54 interaction domain Ami103574_14290 PF13426 PAS domain Ami103574_14290 PF02954 Bacterial regulatory protein, Fis family Ami103574_14295 PF00117 Glutamine amidotransferase class-I Ami103574_14295 PF00958 GMP synthase C terminal domain Ami103574_14300 PF00478 IMP dehydrogenase / GMP reductase domain Ami103574_14300 PF00571 CBS domain Ami103574_14305 PF02557 D-alanyl-D-alanine carboxypeptidase Ami103574_14320 PF00072 Response regulator receiver domain Ami103574_14320 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_14325 PF00118 TCP-1/cpn60 chaperonin family Ami103574_14330 PF00166 Chaperonin 10 Kd subunit Ami103574_14335 PF04474 Protein of unknown function (DUF554) Ami103574_14350 PF13187 4Fe-4S dicluster domain Ami103574_14355 PF02629 CoA binding domain Ami103574_14355 PF06971 Putative DNA-binding protein N-terminus Ami103574_14360 PF00550 Phosphopantetheine attachment site Ami103574_14365 PF12848 ABC transporter Ami103574_14365 PF00005 ABC transporter Ami103574_14365 PF16326 ABC transporter C-terminal domain Ami103574_14370 PF00814 Glycoprotease family Ami103574_14380 PF00583 Acetyltransferase (GNAT) family Ami103574_14385 PF00814 Glycoprotease family Ami103574_14390 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE Ami103574_14400 PF00005 ABC transporter Ami103574_14415 PF12833 Helix-turn-helix domain Ami103574_14420 PF12822 ECF transporter, substrate-specific component Ami103574_14425 PF01546 Peptidase family M20/M25/M40 Ami103574_14435 PF01106 NifU-like domain Ami103574_14445 PF02915 Rubrerythrin Ami103574_14465 PF01168 Alanine racemase, N-terminal domain Ami103574_14470 PF13193 AMP-binding enzyme C-terminal domain Ami103574_14470 PF00501 AMP-binding enzyme Ami103574_14475 PF00501 AMP-binding enzyme Ami103574_14475 PF13193 AMP-binding enzyme C-terminal domain Ami103574_14485 PF04389 Peptidase family M28 Ami103574_14485 PF02225 PA domain Ami103574_14510 PF01638 HxlR-like helix-turn-helix Ami103574_14520 PF13302 Acetyltransferase (GNAT) domain Ami103574_14525 PF16326 ABC transporter C-terminal domain Ami103574_14525 PF00005 ABC transporter Ami103574_14525 PF12848 ABC transporter Ami103574_14550 PF04346 Ethanolamine utilisation protein, EutH Ami103574_14555 PF03319 Ethanolamine utilisation protein EutN/carboxysome Ami103574_14570 PF00936 BMC domain Ami103574_14575 PF00936 BMC domain Ami103574_14580 PF00936 BMC domain Ami103574_14585 PF00936 BMC domain Ami103574_14590 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Ami103574_14595 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Ami103574_14600 PF06277 Ethanolamine utilisation protein EutA Ami103574_14605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_14605 PF07568 Histidine kinase Ami103574_14605 PF12282 Signal transduction histidine kinase Ami103574_14610 PF00072 Response regulator receiver domain Ami103574_14610 PF03861 ANTAR domain Ami103574_14615 PF00936 BMC domain Ami103574_14620 PF10662 Ethanolamine utilisation - propanediol utilisation Ami103574_14625 PF03358 NADPH-dependent FMN reductase Ami103574_14640 PF01966 HD domain Ami103574_14640 PF00072 Response regulator receiver domain Ami103574_14650 PF04954 Siderophore-interacting protein Ami103574_14650 PF08021 Siderophore-interacting FAD-binding domain Ami103574_14650 PF00005 ABC transporter Ami103574_14650 PF00664 ABC transporter transmembrane region Ami103574_14655 PF00005 ABC transporter Ami103574_14655 PF00664 ABC transporter transmembrane region Ami103574_14670 PF00313 'Cold-shock' DNA-binding domain Ami103574_14685 PF00005 ABC transporter Ami103574_14690 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_14690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_14695 PF00486 Transcriptional regulatory protein, C terminal Ami103574_14695 PF00072 Response regulator receiver domain Ami103574_14700 PF00072 Response regulator receiver domain Ami103574_14700 PF00486 Transcriptional regulatory protein, C terminal Ami103574_14705 PF00989 PAS fold Ami103574_14705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_14705 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_14705 PF16736 Single Cache-like Ami103574_14715 PF00009 Elongation factor Tu GTP binding domain Ami103574_14720 PF01507 Phosphoadenosine phosphosulfate reductase family Ami103574_14735 PF00356 Bacterial regulatory proteins, lacI family Ami103574_14740 PF08402 TOBE domain Ami103574_14740 PF00005 ABC transporter Ami103574_14745 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_14750 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_14760 PF00005 ABC transporter Ami103574_14760 PF00664 ABC transporter transmembrane region Ami103574_14765 PF00005 ABC transporter Ami103574_14770 PF01032 FecCD transport family Ami103574_14775 PF01032 FecCD transport family Ami103574_14780 PF01497 Periplasmic binding protein Ami103574_14790 PF12833 Helix-turn-helix domain Ami103574_14795 PF00394 Multicopper oxidase Ami103574_14795 PF07732 Multicopper oxidase Ami103574_14795 PF07731 Multicopper oxidase Ami103574_14810 PF01638 HxlR-like helix-turn-helix Ami103574_14830 PF01228 Glycine radical Ami103574_14830 PF02901 Pyruvate formate lyase-like Ami103574_14835 PF18671 4-Hydroxyphenylacetate decarboxylase subunit gamma N-terminal Ami103574_14835 PF18524 High potential iron-sulfur protein like Ami103574_14840 PF04055 Radical SAM superfamily Ami103574_14845 PF09297 NADH pyrophosphatase zinc ribbon domain Ami103574_14845 PF00293 NUDIX domain Ami103574_14865 PF12705 PD-(D/E)XK nuclease superfamily Ami103574_14870 PF03060 Nitronate monooxygenase Ami103574_14875 PF07977 FabA-like domain Ami103574_14880 PF00109 Beta-ketoacyl synthase, N-terminal domain Ami103574_14880 PF02801 Beta-ketoacyl synthase, C-terminal domain Ami103574_14890 PF00698 Acyl transferase domain Ami103574_14895 PF03060 Nitronate monooxygenase Ami103574_14900 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ami103574_14900 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Ami103574_14905 PF00534 Glycosyl transferases group 1 Ami103574_14905 PF13439 Glycosyltransferase Family 4 Ami103574_14910 PF13419 Haloacid dehalogenase-like hydrolase Ami103574_14920 PF17674 HHH domain Ami103574_14920 PF00575 S1 RNA binding domain Ami103574_14920 PF16921 Tex protein YqgF-like domain Ami103574_14920 PF09371 Tex-like protein N-terminal domain Ami103574_14930 PF01043 SecA preprotein cross-linking domain Ami103574_14930 PF02810 SEC-C motif Ami103574_14930 PF07516 SecA Wing and Scaffold domain Ami103574_14930 PF07517 SecA DEAD-like domain Ami103574_14935 PF00571 CBS domain Ami103574_14935 PF03471 Transporter associated domain Ami103574_14935 PF01595 Cyclin M transmembrane N-terminal domain Ami103574_14940 PF04204 Homoserine O-succinyltransferase Ami103574_14945 PF00696 Amino acid kinase family Ami103574_14945 PF13840 ACT domain Ami103574_14950 PF02773 S-adenosylmethionine synthetase, C-terminal domain Ami103574_14950 PF02772 S-adenosylmethionine synthetase, central domain Ami103574_14950 PF00438 S-adenosylmethionine synthetase, N-terminal domain Ami103574_14965 PF01520 N-acetylmuramoyl-L-alanine amidase Ami103574_14970 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Ami103574_14970 PF01411 tRNA synthetases class II (A) Ami103574_14970 PF02272 DHHA1 domain Ami103574_14975 PF01144 Coenzyme A transferase Ami103574_14980 PF01144 Coenzyme A transferase Ami103574_14985 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase Ami103574_14985 PF02310 B12 binding domain Ami103574_14990 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Ami103574_14995 PF01713 Smr domain Ami103574_14995 PF00488 MutS domain V Ami103574_15005 PF12544 Lysine-2,3-aminomutase Ami103574_15005 PF04055 Radical SAM superfamily Ami103574_15020 PF00158 Sigma-54 interaction domain Ami103574_15025 PF03061 Thioesterase superfamily Ami103574_15030 PF00206 Lyase Ami103574_15030 PF14698 Argininosuccinate lyase C-terminal Ami103574_15040 PF01546 Peptidase family M20/M25/M40 Ami103574_15040 PF07687 Peptidase dimerisation domain Ami103574_15045 PF01368 DHH family Ami103574_15045 PF07085 DRTGG domain Ami103574_15045 PF02833 DHHA2 domain Ami103574_15045 PF00571 CBS domain Ami103574_15055 PF00005 ABC transporter Ami103574_15055 PF00664 ABC transporter transmembrane region Ami103574_15060 PF00664 ABC transporter transmembrane region Ami103574_15060 PF00005 ABC transporter Ami103574_15070 PF01134 Glucose inhibited division protein A Ami103574_15070 PF13932 GidA associated domain Ami103574_15070 PF13932 GidA associated domain Ami103574_15070 PF01134 Glucose inhibited division protein A Ami103574_15085 PF00158 Sigma-54 interaction domain Ami103574_15085 PF00072 Response regulator receiver domain Ami103574_15085 PF02954 Bacterial regulatory protein, Fis family Ami103574_15120 PF00324 Amino acid permease Ami103574_15125 PF01546 Peptidase family M20/M25/M40 Ami103574_15135 PF02954 Bacterial regulatory protein, Fis family Ami103574_15135 PF13426 PAS domain Ami103574_15135 PF00158 Sigma-54 interaction domain Ami103574_15140 PF13411 MerR HTH family regulatory protein Ami103574_15140 PF06445 GyrI-like small molecule binding domain Ami103574_15145 PF00072 Response regulator receiver domain Ami103574_15165 PF00849 RNA pseudouridylate synthase Ami103574_15165 PF01479 S4 domain Ami103574_15170 PF00691 OmpA family Ami103574_15170 PF13677 Membrane MotB of proton-channel complex MotA/MotB Ami103574_15175 PF01618 MotA/TolQ/ExbB proton channel family Ami103574_15180 PF00873 AcrB/AcrD/AcrF family Ami103574_15190 PF00672 HAMP domain Ami103574_15190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_15190 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_15220 PF05593 RHS Repeat Ami103574_15220 PF03527 RHS protein Ami103574_15230 PF00486 Transcriptional regulatory protein, C terminal Ami103574_15230 PF00072 Response regulator receiver domain Ami103574_15240 PF02743 Cache domain Ami103574_15240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami103574_15240 PF00672 HAMP domain Ami103574_15245 PF01797 Transposase IS200 like Ami103574_15250 PF02844 Phosphoribosylglycinamide synthetase, N domain Ami103574_15250 PF02843 Phosphoribosylglycinamide synthetase, C domain Ami103574_15250 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Ami103574_15255 PF02142 MGS-like domain Ami103574_15255 PF01808 AICARFT/IMPCHase bienzyme Ami103574_15260 PF00551 Formyl transferase Ami103574_15265 PF02769 AIR synthase related protein, C-terminal domain Ami103574_15265 PF00586 AIR synthase related protein, N-terminal domain Ami103574_15270 PF00156 Phosphoribosyl transferase domain Ami103574_15275 PF01259 SAICAR synthetase Ami103574_15280 PF00731 AIR carboxylase Ami103574_15285 PF00586 AIR synthase related protein, N-terminal domain Ami103574_15285 PF02769 AIR synthase related protein, C-terminal domain Ami103574_15285 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Ami103574_15295 PF04172 LrgB-like family Ami103574_15300 PF03788 LrgA family Ami103574_15315 PF07943 Penicillin-binding protein 5, C-terminal domain Ami103574_15315 PF00768 D-alanyl-D-alanine carboxypeptidase Ami103574_15335 PF04079 Segregation and condensation complex subunit ScpB Ami103574_15340 PF02616 Segregation and condensation protein ScpA Ami103574_15350 PF01008 Initiation factor 2 subunit family Ami103574_15355 PF03313 Serine dehydratase alpha chain Ami103574_15360 PF01842 ACT domain Ami103574_15360 PF03315 Serine dehydratase beta chain Ami103574_15365 PF01464 Transglycosylase SLT domain Ami103574_15370 PF00285 Citrate synthase, C-terminal domain Ami103574_15375 PF00990 Diguanylate cyclase, GGDEF domain Ami103574_15375 PF17158 Membrane-associated sensor, integral membrane domain Ami103574_15380 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Ami103574_15380 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Ami103574_15385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Ami103574_15385 PF02874 ATP synthase alpha/beta family, beta-barrel domain Ami103574_15390 PF00231 ATP synthase Ami103574_15395 PF00306 ATP synthase alpha/beta chain, C terminal domain Ami103574_15395 PF02874 ATP synthase alpha/beta family, beta-barrel domain Ami103574_15395 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Ami103574_15400 PF00213 ATP synthase delta (OSCP) subunit Ami103574_15405 PF00430 ATP synthase B/B' CF(0) Ami103574_15410 PF00137 ATP synthase subunit C Ami103574_15415 PF00119 ATP synthase A chain Ami103574_15425 PF01554 MatE Ami103574_15430 PF02350 UDP-N-acetylglucosamine 2-epimerase Ami103574_15435 PF00953 Glycosyl transferase family 4 Ami103574_15440 PF14437 MafB19-like deaminase Ami103574_15445 PF01416 tRNA pseudouridine synthase Ami103574_15450 PF01985 CRS1 / YhbY (CRM) domain Ami103574_15455 PF00072 Response regulator receiver domain Ami103574_15455 PF09308 LuxQ, periplasmic Ami103574_15455 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_15455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_15460 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Ami103574_15460 PF00749 tRNA synthetases class I (E and Q), catalytic domain Ami103574_15465 PF04127 DNA / pantothenate metabolism flavoprotein Ami103574_15465 PF02441 Flavoprotein Ami103574_15475 PF00005 ABC transporter Ami103574_15480 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_15485 PF00497 Bacterial extracellular solute-binding proteins, family 3 Ami103574_15495 PF02803 Thiolase, C-terminal domain Ami103574_15495 PF00108 Thiolase, N-terminal domain Ami103574_15505 PF01975 Survival protein SurE Ami103574_15515 PF16736 Single Cache-like Ami103574_15515 PF00989 PAS fold Ami103574_15515 PF00512 His Kinase A (phospho-acceptor) domain Ami103574_15515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami103574_15520 PF00072 Response regulator receiver domain Ami103574_15520 PF00486 Transcriptional regulatory protein, C terminal Ami103574_15525 PF01895 PhoU domain Ami103574_15530 PF00005 ABC transporter Ami103574_15535 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_15540 PF00528 Binding-protein-dependent transport system inner membrane component Ami103574_15545 PF12849 PBP superfamily domain Ami103574_15550 PF02146 Sir2 family Ami103574_15555 PF02361 Cobalt transport protein Ami103574_15560 PF00005 ABC transporter Ami103574_15565 PF01891 Cobalt uptake substrate-specific transmembrane region Ami103574_15575 PF00224 Pyruvate kinase, barrel domain Ami103574_15575 PF02887 Pyruvate kinase, alpha/beta domain Ami103574_15595 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Ami103574_15595 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ami103574_15605 PF00072 Response regulator receiver domain Ami103574_15605 PF00158 Sigma-54 interaction domain Ami103574_15605 PF02954 Bacterial regulatory protein, Fis family Ami103574_15650 PF13276 HTH-like domain Ami103574_15650 PF13333 Integrase core domain Ami103574_15650 PF00665 Integrase core domain