locus-tag	class	description
Ami103574_00005	COG0833	amino acid
Ami103574_00015	COG0019	diaminopimelate decarboxylase activity
Ami103574_00020	COG2204	response regulator
Ami103574_00035	COG2807	transmembrane transport
Ami103574_00115	COG0305	Participates in initiation and elongation during chromosome replication
Ami103574_00160	COG1725	Transcriptional regulator
Ami103574_00165	COG1131	(ABC) transporter
Ami103574_00175	COG0010	Belongs to the arginase family
Ami103574_00180	COG0833	amino acid
Ami103574_00185	COG3829	transcription factor binding
Ami103574_00260	COG2878	Part of a membrane complex involved in electron transport
Ami103574_00260	COG1245	4Fe-4S binding domain
Ami103574_00265	COG4657	Part of a membrane complex involved in electron transport
Ami103574_00270	COG4660	Part of a membrane complex involved in electron transport
Ami103574_00275	COG4659	FMN binding
Ami103574_00280	COG4658	electron transport chain
Ami103574_00285	COG4656	Part of a membrane complex involved in electron transport
Ami103574_00290	COG0583	DNA-binding transcription factor activity
Ami103574_00295	COG2217	Heavy metal translocating P-type atpase
Ami103574_00300	COG0640	Transcriptional regulator
Ami103574_00305	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
Ami103574_00310	COG2357	RelA SpoT domain protein
Ami103574_00345	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
Ami103574_00355	COG1615	UPF0182 protein
Ami103574_00395	COG3829	transcription factor binding
Ami103574_00395	COG3290	protein histidine kinase activity
Ami103574_00405	COG0280	phosphate acetyltransferase
Ami103574_00410	COG3246	L-lysine catabolic process to acetate
Ami103574_00415	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Ami103574_00425	COG2610	gluconate transmembrane transporter activity
Ami103574_00430	COG1250	3-hydroxyacyl-CoA dehydrogenase
Ami103574_00435	COG2199	diguanylate cyclase activity
Ami103574_00435	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Ami103574_00440	COG0582	viral genome integration into host DNA
Ami103574_00445	COG2814	Major facilitator Superfamily
Ami103574_00450	COG0765	amino acid transport
Ami103574_00455	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Ami103574_00460	COG0626	cystathionine gamma-synthase activity
Ami103574_00465	COG1126	abc transporter atp-binding protein
Ami103574_00480	COG0789	Transcriptional regulator
Ami103574_00480	COG4978	Transcriptional regulator
Ami103574_00485	COG1811	Na channel or pump
Ami103574_00490	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
Ami103574_00520	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
Ami103574_00525	COG1773	rubredoxin
Ami103574_00530	COG0426	domain, Protein
Ami103574_00535	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
Ami103574_00550	COG0840	transmembrane signaling receptor activity
Ami103574_00555	COG2827	Endonuclease containing a URI domain
Ami103574_00560	COG0784	Response regulator, receiver
Ami103574_00560	COG0835	chemotaxis
Ami103574_00565	COG3457	Alanine racemase
Ami103574_00575	COG5012	cobalamin binding
Ami103574_00585	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
Ami103574_00595	COG3804	dihydrodipicolinate reductase
Ami103574_00600	COG3829	transcription factor binding
Ami103574_00625	COG2200	EAL domain
Ami103574_00640	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
Ami103574_00665	COG0328	RNA-DNA hybrid ribonuclease activity
Ami103574_00670	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
Ami103574_00675	COG2076	Multidrug Resistance protein
Ami103574_00700	COG1725	Transcriptional regulator
Ami103574_00710	COG0577	efflux transmembrane transporter activity
Ami103574_00715	COG1136	(ABC) transporter
Ami103574_00720	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Ami103574_00730	COG1475	DNA binding
Ami103574_00735	COG1192	Involved in chromosome partitioning
Ami103574_00745	COG0357	Ribosomal RNA small subunit methyltransferase G
Ami103574_00750	COG0445	tRNA wobble uridine modification
Ami103574_00755	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
Ami103574_00760	COG1847	R3H domain protein
Ami103574_00765	COG0706	membrane insertase activity
Ami103574_00770	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
Ami103574_00780	COG0230	Belongs to the bacterial ribosomal protein bL34 family
Ami103574_00790	COG0592	DNA-directed DNA polymerase activity
Ami103574_00800	COG0187	DNA topoisomerase II activity
Ami103574_00805	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
Ami103574_00810	COG2172	sigma factor antagonist activity
Ami103574_00815	COG1191	sigma factor activity
Ami103574_00820	COG0180	Tryptophanyl-tRNA synthetase
Ami103574_00835	COG0671	phosphoesterase, PA-phosphatase related
Ami103574_00840	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
Ami103574_00855	COG0183	Belongs to the thiolase family
Ami103574_00860	COG1979	alcohol dehydrogenase
Ami103574_00875	COG3246	L-lysine catabolic process to acetate
Ami103574_00890	COG1250	3-hydroxyacyl-CoA dehydrogenase
Ami103574_00900	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
Ami103574_00905	COG0583	DNA-binding transcription factor activity
Ami103574_00920	COG1606	tRNA processing
Ami103574_00940	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
Ami103574_00945	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
Ami103574_00950	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
Ami103574_00960	COG2205	protein histidine kinase activity
Ami103574_00965	COG0745	RESPONSE REGULATOR receiver
Ami103574_00995	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Ami103574_00995	COG1116	anion transmembrane transporter activity
Ami103574_01000	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Ami103574_01010	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
Ami103574_01020	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
Ami103574_01025	COG0626	cystathionine gamma-synthase activity
Ami103574_01030	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
Ami103574_01070	COG0386	Belongs to the glutathione peroxidase family
Ami103574_01075	COG1846	Transcriptional regulator
Ami103574_01095	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Ami103574_01100	COG0360	Binds together with S18 to 16S ribosomal RNA
Ami103574_01105	COG0629	single-stranded DNA binding
Ami103574_01110	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
Ami103574_01125	COG0248	Ppx GppA phosphatase
Ami103574_01130	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Ami103574_01130	COG2199	diguanylate cyclase activity
Ami103574_01135	COG0840	transmembrane signaling receptor activity
Ami103574_01140	COG0582	viral genome integration into host DNA
Ami103574_01150	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
Ami103574_01155	COG0359	binds to the 23S rRNA
Ami103574_01160	COG0305	Participates in initiation and elongation during chromosome replication
Ami103574_01170	COG0739	heme binding
Ami103574_01180	COG1773	rubredoxin
Ami103574_01180	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
Ami103574_01185	COG1592	Rubrerythrin
Ami103574_01205	COG3608	succinylglutamate desuccinylase aspartoacylase
Ami103574_01225	COG0444	Belongs to the ABC transporter superfamily
Ami103574_01230	COG4608	Belongs to the ABC transporter superfamily
Ami103574_01235	COG0534	Mate efflux family protein
Ami103574_01245	COG3118	belongs to the thioredoxin family
Ami103574_01270	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
Ami103574_01275	COG2873	o-acetylhomoserine
Ami103574_01280	COG2207	Transcriptional regulator
Ami103574_01280	COG4753	response regulator
Ami103574_01290	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Ami103574_01295	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Ami103574_01305	COG1882	Formate acetyltransferase
Ami103574_01310	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Ami103574_01315	COG1404	Belongs to the peptidase S8 family
Ami103574_01320	COG0745	RESPONSE REGULATOR receiver
Ami103574_01325	COG5002	protein histidine kinase activity
Ami103574_01345	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
Ami103574_01350	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
Ami103574_01360	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Ami103574_01380	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Ami103574_01385	COG0251	oxidation-reduction process
Ami103574_01390	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
Ami103574_01400	COG0710	3-dehydroquinate dehydratase activity
Ami103574_01405	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Ami103574_01410	COG0077	Prephenate dehydratase
Ami103574_01410	COG1605	Chorismate mutase
Ami103574_01415	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
Ami103574_01420	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
Ami103574_01425	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
Ami103574_01430	COG0287	Prephenate dehydrogenase
Ami103574_01435	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
Ami103574_01440	COG5002	protein histidine kinase activity
Ami103574_01440	COG5001	Diguanylate cyclase
Ami103574_01440	COG3447	MASE1 domain protein
Ami103574_01450	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
Ami103574_01455	COG0066	3-isopropylmalate dehydratase activity
Ami103574_01460	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
Ami103574_01465	COG0066	3-isopropylmalate dehydratase activity
Ami103574_01470	COG0473	3-isopropylmalate dehydrogenase activity
Ami103574_01475	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Ami103574_01480	COG0028	Belongs to the TPP enzyme family
Ami103574_01485	COG0440	acetolactate synthase activity
Ami103574_01490	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
Ami103574_01495	COG0129	dihydroxy-acid dehydratase activity
Ami103574_01530	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
Ami103574_01535	COG2226	methyltransferase
Ami103574_01545	COG1132	(ABC) transporter
Ami103574_01550	COG0601	transmembrane transport
Ami103574_01560	COG0444	Belongs to the ABC transporter superfamily
Ami103574_01565	COG4608	Belongs to the ABC transporter superfamily
Ami103574_01570	COG0747	negative chemotaxis
Ami103574_01575	COG2986	histidine ammonia-lyase
Ami103574_01585	COG1228	amidohydrolase
Ami103574_01605	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
Ami103574_01620	COG1114	Component of the transport system for branched-chain amino acids
Ami103574_01625	COG2233	PERMEase
Ami103574_01650	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
Ami103574_01655	COG2223	nitrite transmembrane transporter activity
Ami103574_01660	COG2936	dipeptidyl-peptidase activity
Ami103574_01665	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
Ami103574_01695	COG0577	efflux transmembrane transporter activity
Ami103574_01695	COG1136	(ABC) transporter
Ami103574_01705	COG1361	Conserved repeat domain
Ami103574_01705	COG2911	Protein conserved in bacteria
Ami103574_01705	COG3266	domain, Protein
Ami103574_01760	COG0840	transmembrane signaling receptor activity
Ami103574_01770	COG2249	NAD(P)H dehydrogenase (quinone) activity
Ami103574_01780	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Ami103574_01805	COG0446	pyridine nucleotide-disulphide oxidoreductase
Ami103574_01810	COG1228	amidohydrolase
Ami103574_01825	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
Ami103574_01830	COG1802	Transcriptional regulator
Ami103574_01835	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Ami103574_01835	COG1776	CheC inhibitor of MCP methylation
Ami103574_01855	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Ami103574_01860	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Ami103574_01865	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
Ami103574_01880	COG0793	Belongs to the peptidase S41A family
Ami103574_01885	COG4868	Belongs to the UPF0371 family
Ami103574_01925	COG2373	Large extracellular alpha-helical protein
Ami103574_01935	COG1361	Conserved repeat domain
Ami103574_01935	COG2911	Protein conserved in bacteria
Ami103574_01935	COG3266	domain, Protein
Ami103574_01945	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Ami103574_01950	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Ami103574_01950	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Ami103574_01955	COG0728	peptidoglycan biosynthetic process
Ami103574_01970	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
Ami103574_01980	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
Ami103574_01985	COG0110	maltose O-acetyltransferase activity
Ami103574_01990	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Ami103574_02015	COG0438	transferase activity, transferring glycosyl groups
Ami103574_02025	COG1088	dTDP-glucose 4,6-dehydratase activity
Ami103574_02035	COG1134	teichoic acid transport
Ami103574_02045	COG1216	Glycosyl transferase, family 2
Ami103574_02065	COG0110	maltose O-acetyltransferase activity
Ami103574_02075	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Ami103574_02090	COG1442	glycosyl transferase family 8
Ami103574_02090	COG1216	Glycosyl transferase, family 2
Ami103574_02105	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Ami103574_02140	COG0166	Belongs to the GPI family
Ami103574_02145	COG1250	3-hydroxyacyl-CoA dehydrogenase
Ami103574_02155	COG1316	TRANSCRIPTIONal
Ami103574_02165	COG3872	metal-dependent enzyme
Ami103574_02170	COG2890	protein-(glutamine-N5) methyltransferase activity
Ami103574_02180	COG0254	rRNA binding
Ami103574_02185	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
Ami103574_02190	COG0009	L-threonylcarbamoyladenylate synthase
Ami103574_02195	COG0698	ribose 5-phosphate isomerase
Ami103574_02205	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
Ami103574_02210	COG1136	(ABC) transporter
Ami103574_02220	COG1136	(ABC) transporter
Ami103574_02220	COG0577	efflux transmembrane transporter activity
Ami103574_02230	COG5002	protein histidine kinase activity
Ami103574_02235	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Ami103574_02235	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
Ami103574_02240	COG3481	metal-dependent phosphohydrolase, HD sub domain
Ami103574_02245	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
Ami103574_02250	COG1040	competence protein
Ami103574_02260	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
Ami103574_02270	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Ami103574_02285	COG3829	transcription factor binding
Ami103574_02290	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ami103574_02310	COG1473	amidohydrolase
Ami103574_02315	COG0531	amino acid
Ami103574_02335	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
Ami103574_02345	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
Ami103574_02350	COG0726	polysaccharide deacetylase
Ami103574_02360	COG1803	Methylglyoxal synthase
Ami103574_02375	COG1396	sequence-specific DNA binding
Ami103574_02380	COG1396	sequence-specific DNA binding
Ami103574_02395	COG2359	stage V sporulation protein S
Ami103574_02405	COG1484	DNA-dependent DNA replication
Ami103574_02470	COG0629	single-stranded DNA binding
Ami103574_02665	COG1595	DNA-templated transcription, initiation
Ami103574_02720	COG2088	sporulation resulting in formation of a cellular spore
Ami103574_02730	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
Ami103574_02815	COG2207	Transcriptional regulator
Ami103574_02860	COG0798	PFAM Bile acid sodium symporter
Ami103574_02885	COG0741	lytic transglycosylase activity
Ami103574_02885	COG0791	NLP P60 protein
Ami103574_02970	COG2720	vancomycin resistance protein
Ami103574_02975	COG1181	Belongs to the D-alanine--D-alanine ligase family
Ami103574_03000	COG2337	Toxic component of a toxin-antitoxin (TA) module
Ami103574_03045	COG4932	domain protein
Ami103574_03045	COG5492	domain, Protein
Ami103574_03050	COG0840	transmembrane signaling receptor activity
Ami103574_03070	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Ami103574_03075	COG1971	Probably functions as a manganese efflux pump
Ami103574_03090	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Ami103574_03100	COG3635	2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
Ami103574_03105	COG1686	Belongs to the peptidase S11 family
Ami103574_03110	COG0322	excinuclease ABC activity
Ami103574_03115	COG3906	Belongs to the UPF0473 family
Ami103574_03125	COG1558	bacterial-type flagellum-dependent cell motility
Ami103574_03135	COG1766	The M ring may be actively involved in energy transduction
Ami103574_03140	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Ami103574_03150	COG1157	protein secretion by the type III secretion system
Ami103574_03175	COG4786	Flagellar basal body rod
Ami103574_03185	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Ami103574_03190	COG1776	CheC inhibitor of MCP methylation
Ami103574_03190	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Ami103574_03195	COG2201	protein-glutamate methylesterase activity
Ami103574_03205	COG1338	Plays a role in the flagellum-specific transport system
Ami103574_03220	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
Ami103574_03245	COG1256	bacterial-type flagellum assembly
Ami103574_03245	COG4786	Flagellar basal body rod
Ami103574_03260	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
Ami103574_03265	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
Ami103574_03285	COG2201	protein-glutamate methylesterase activity
Ami103574_03300	COG3693	PFAM glycoside hydrolase, family 10
Ami103574_03305	COG1815	bacterial-type flagellum-dependent cell motility
Ami103574_03310	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
Ami103574_03315	COG1191	sigma factor activity
Ami103574_03320	COG4786	Flagellar basal body rod
Ami103574_03325	COG4786	Flagellar basal body rod
Ami103574_03335	COG1776	CheC inhibitor of MCP methylation
Ami103574_03350	COG1192	Involved in chromosome partitioning
Ami103574_03355	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
Ami103574_03370	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
Ami103574_03400	COG0693	protein deglycase activity
Ami103574_03405	COG0613	PHP domain protein
Ami103574_03415	COG2155	Conserved Protein
Ami103574_03420	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
Ami103574_03425	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Ami103574_03430	COG0051	transcription antitermination factor activity, RNA binding
Ami103574_03440	COG0088	Forms part of the polypeptide exit tunnel
Ami103574_03445	COG0089	rRNA binding
Ami103574_03450	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
Ami103574_03455	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
Ami103574_03460	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
Ami103574_03465	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
Ami103574_03470	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
Ami103574_03475	COG0255	Belongs to the universal ribosomal protein uL29 family
Ami103574_03480	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
Ami103574_03485	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
Ami103574_03490	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
Ami103574_03495	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
Ami103574_03500	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
Ami103574_03505	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
Ami103574_03515	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
Ami103574_03520	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
Ami103574_03525	COG1841	ribosomal large subunit assembly
Ami103574_03530	COG0200	Binds to the 23S rRNA
Ami103574_03535	COG0201	protein transport
Ami103574_03540	COG0563	adenylate kinase activity
Ami103574_03550	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Ami103574_03555	COG0257	Belongs to the bacterial ribosomal protein bL36 family
Ami103574_03560	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
Ami103574_03565	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
Ami103574_03570	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
Ami103574_03575	COG0202	RNA polymerase activity
Ami103574_03580	COG0203	ribosomal protein L17
Ami103574_03585	COG1122	ATPase activity
Ami103574_03590	COG1122	ATPase activity
Ami103574_03595	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
Ami103574_03605	COG0220	tRNA (guanine-N7-)-methyltransferase activity
Ami103574_03630	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
Ami103574_03635	COG1288	antiporter activity
Ami103574_03645	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
Ami103574_03655	COG0674	pyruvate-flavodoxin oxidoreductase activity
Ami103574_03655	COG1013	pyruvate-flavodoxin oxidoreductase activity
Ami103574_03655	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
Ami103574_03655	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Ami103574_03665	COG0493	'glutamate synthase
Ami103574_03665	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
Ami103574_03670	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Ami103574_03675	COG1827	regulation of RNA biosynthetic process
Ami103574_03680	COG1473	amidohydrolase
Ami103574_03690	COG0484	heat shock protein binding
Ami103574_03700	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
Ami103574_03715	COG1404	Belongs to the peptidase S8 family
Ami103574_03725	COG3279	Response regulator of the LytR AlgR family
Ami103574_03760	COG0544	peptidyl-prolyl cis-trans isomerase activity
Ami103574_03765	COG0740	serine-type endopeptidase activity
Ami103574_03770	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
Ami103574_03775	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Ami103574_03780	COG0218	Necessary for normal cell division and for the maintenance of normal septation
Ami103574_03795	COG4869	propanediol catabolic process
Ami103574_03860	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
Ami103574_03865	COG2385	sporulation resulting in formation of a cellular spore
Ami103574_03880	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
Ami103574_03925	COG1342	Belongs to the UPF0251 family
Ami103574_03930	COG0840	transmembrane signaling receptor activity
Ami103574_03935	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Ami103574_03945	COG3706	GGDEF domain
Ami103574_03970	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
Ami103574_04000	COG5002	protein histidine kinase activity
Ami103574_04005	COG0745	RESPONSE REGULATOR receiver
Ami103574_04025	COG1388	LysM domain
Ami103574_04025	COG3858	chitin binding
Ami103574_04040	COG0551	DNA topoisomerase type I activity
Ami103574_04040	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Ami103574_04050	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
Ami103574_04060	COG0646	methionine synthase
Ami103574_04060	COG1410	methionine synthase
Ami103574_04065	COG0488	(ABC) transporter
Ami103574_04070	COG1132	(ABC) transporter
Ami103574_04075	COG1132	(ABC) transporter
Ami103574_04090	COG1408	metallophosphoesterase
Ami103574_04100	COG1595	DNA-templated transcription, initiation
Ami103574_04110	COG1131	(ABC) transporter
Ami103574_04155	COG4115	mRNA cleavage
Ami103574_04205	COG2911	Protein conserved in bacteria
Ami103574_04205	COG3266	domain, Protein
Ami103574_04205	COG1361	Conserved repeat domain
Ami103574_04250	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
Ami103574_04300	COG2359	stage V sporulation protein S
Ami103574_04305	COG2002	toxin-antitoxin pair type II binding
Ami103574_04520	COG5492	domain, Protein
Ami103574_04520	COG4932	domain protein
Ami103574_04545	COG3546	catalase activity
Ami103574_04615	COG3299	homolog of phage Mu protein gp47
Ami103574_04650	COG4942	peptidase
Ami103574_04670	COG0708	Exodeoxyribonuclease III
Ami103574_04700	COG3655	Transcriptional regulator
Ami103574_04720	COG0824	Thioesterase
Ami103574_04725	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Ami103574_04730	COG0583	DNA-binding transcription factor activity
Ami103574_04755	COG0531	amino acid
Ami103574_04770	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ami103574_04780	COG0693	protein deglycase activity
Ami103574_04800	COG3328	transposase activity
Ami103574_04825	COG1857	crispr-associated protein
Ami103574_04840	COG1518	maintenance of DNA repeat elements
Ami103574_04845	COG2176	DNA-directed DNA polymerase activity
Ami103574_04870	COG2226	methyltransferase
Ami103574_04875	COG5001	Diguanylate cyclase
Ami103574_04880	COG1733	regulation of RNA biosynthetic process
Ami103574_04895	COG0277	FAD linked oxidase domain protein
Ami103574_04900	COG1846	Transcriptional regulator
Ami103574_04910	COG0275	rRNA processing
Ami103574_04915	COG3246	L-lysine catabolic process to acetate
Ami103574_04920	COG0583	DNA-binding transcription factor activity
Ami103574_04925	COG0183	Belongs to the thiolase family
Ami103574_04950	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Ami103574_04950	COG0493	'glutamate synthase
Ami103574_04960	COG0431	NADPH-dependent FMN reductase
Ami103574_04960	COG1053	succinate dehydrogenase
Ami103574_04960	COG3976	FMN-binding domain protein
Ami103574_04990	COG1028	Short-chain dehydrogenase reductase Sdr
Ami103574_05005	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
Ami103574_05025	COG0789	Transcriptional regulator
Ami103574_05050	COG1136	(ABC) transporter
Ami103574_05050	COG0577	efflux transmembrane transporter activity
Ami103574_05055	COG2205	protein histidine kinase activity
Ami103574_05060	COG0745	RESPONSE REGULATOR receiver
Ami103574_05065	COG1846	Transcriptional regulator
Ami103574_05080	COG2226	methyltransferase
Ami103574_05085	COG1959	2 iron, 2 sulfur cluster binding
Ami103574_05095	COG1132	(ABC) transporter
Ami103574_05115	COG2094	Belongs to the DNA glycosylase MPG family
Ami103574_05135	COG3695	enzyme binding
Ami103574_05145	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ami103574_05150	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
Ami103574_05155	COG1687	branched-chain amino acid
Ami103574_05170	COG1733	regulation of RNA biosynthetic process
Ami103574_05175	COG0531	amino acid
Ami103574_05195	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
Ami103574_05200	COG1360	Flagellar Motor Protein
Ami103574_05210	COG1113	amino acid transport
Ami103574_05230	COG2508	Transcriptional regulator
Ami103574_05240	COG1361	Conserved repeat domain
Ami103574_05255	COG1691	(AIR) carboxylase
Ami103574_05265	COG3620	sequence-specific DNA binding
Ami103574_05285	COG0789	Transcriptional regulator
Ami103574_05300	COG1116	anion transmembrane transporter activity
Ami103574_05305	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Ami103574_05310	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Ami103574_05315	COG0739	heme binding
Ami103574_05320	COG0598	Magnesium transport protein CorA
Ami103574_05325	COG1151	hydroxylamine reductase activity
Ami103574_05365	COG3842	ATPase activity
Ami103574_05370	COG1176	ABC-type spermidine putrescine transport system, permease component I
Ami103574_05375	COG1177	transmembrane transport
Ami103574_05380	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
Ami103574_05385	COG0288	reversible hydration of carbon dioxide
Ami103574_05390	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Ami103574_05395	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Ami103574_05400	COG1116	anion transmembrane transporter activity
Ami103574_05405	COG0084	hydrolase, TatD family'
Ami103574_05425	COG3279	Response regulator of the LytR AlgR family
Ami103574_05430	COG5492	domain, Protein
Ami103574_05440	COG0024	Methionine aminopeptidase
Ami103574_05460	COG0346	lactoylglutathione lyase activity
Ami103574_05485	COG0803	Belongs to the bacterial solute-binding protein 9 family
Ami103574_05485	COG3443	Belongs to the bacterial solute-binding protein 9 family
Ami103574_05490	COG1121	(ABC) transporter
Ami103574_05495	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Ami103574_05510	COG5001	Diguanylate cyclase
Ami103574_05540	COG3829	transcription factor binding
Ami103574_05545	COG0833	amino acid
Ami103574_05550	COG4187	Peptidase family M20/M25/M40
Ami103574_05555	COG1132	(ABC) transporter
Ami103574_05560	COG1132	(ABC) transporter
Ami103574_05580	COG1331	Highly conserved protein containing a thioredoxin domain
Ami103574_05585	COG1331	Highly conserved protein containing a thioredoxin domain
Ami103574_05600	COG0745	RESPONSE REGULATOR receiver
Ami103574_05610	COG4978	Transcriptional regulator
Ami103574_05610	COG0789	Transcriptional regulator
Ami103574_05640	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
Ami103574_05645	COG1012	belongs to the aldehyde dehydrogenase family
Ami103574_05645	COG1454	alcohol dehydrogenase
Ami103574_05650	COG1882	Formate acetyltransferase
Ami103574_05655	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Ami103574_05685	COG4656	Part of a membrane complex involved in electron transport
Ami103574_05705	COG1454	alcohol dehydrogenase
Ami103574_05705	COG1012	belongs to the aldehyde dehydrogenase family
Ami103574_05710	COG4869	propanediol catabolic process
Ami103574_05760	COG0583	DNA-binding transcription factor activity
Ami103574_05770	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
Ami103574_05785	COG2359	stage V sporulation protein S
Ami103574_05795	COG0488	(ABC) transporter
Ami103574_05800	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
Ami103574_05805	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
Ami103574_05820	COG4974	Belongs to the 'phage' integrase family
Ami103574_05830	COG0765	amino acid transport
Ami103574_05835	COG1126	abc transporter atp-binding protein
Ami103574_05855	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
Ami103574_05860	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
Ami103574_05865	COG2759	Belongs to the formate--tetrahydrofolate ligase family
Ami103574_05870	COG3404	Formiminotransferase-cyclodeaminase
Ami103574_05875	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
Ami103574_05880	COG0113	porphobilinogen synthase activity
Ami103574_05885	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
Ami103574_05895	COG2217	Heavy metal translocating P-type atpase
Ami103574_05915	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
Ami103574_05925	COG0181	hydroxymethylbilane synthase activity
Ami103574_05935	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
Ami103574_05960	COG2226	methyltransferase
Ami103574_05965	COG1309	transcriptional regulator
Ami103574_05975	COG1476	TRANSCRIPTIONal
Ami103574_05995	COG0242	peptide deformylase activity
Ami103574_06020	COG2086	electron transfer activity
Ami103574_06025	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
Ami103574_06035	COG0436	Aminotransferase
Ami103574_06050	COG1132	(ABC) transporter
Ami103574_06055	COG3706	GGDEF domain
Ami103574_06070	COG0525	valine-tRNA ligase activity
Ami103574_06075	COG0285	dihydrofolate synthase activity
Ami103574_06080	COG1597	lipid kinase activity
Ami103574_06085	COG0482	sulfurtransferase activity
Ami103574_06095	COG0726	polysaccharide deacetylase
Ami103574_06105	COG1619	proteins homologs of microcin C7 resistance protein MccF
Ami103574_06110	COG0700	Nucleoside recognition
Ami103574_06115	COG2715	membrane protein required for spore maturation
Ami103574_06135	COG1473	amidohydrolase
Ami103574_06140	COG0833	amino acid
Ami103574_06145	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Ami103574_06150	COG1574	metal-dependent hydrolase with the TIM-barrel fold
Ami103574_06170	COG0416	fatty acid biosynthetic process
Ami103574_06175	COG0571	ribonuclease III activity
Ami103574_06180	COG1196	nuclear chromosome segregation
Ami103574_06185	COG0552	protein localization to endoplasmic reticulum
Ami103574_06190	COG1160	GTP binding
Ami103574_06195	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
Ami103574_06200	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
Ami103574_06205	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Ami103574_06230	COG0436	Aminotransferase
Ami103574_06255	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
Ami103574_06265	COG2814	Major facilitator Superfamily
Ami103574_06275	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
Ami103574_06280	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Ami103574_06285	COG0791	NLP P60 protein
Ami103574_06285	COG1388	LysM domain
Ami103574_06290	COG1994	Peptidase M50
Ami103574_06295	COG1733	regulation of RNA biosynthetic process
Ami103574_06300	COG0542	response to heat
Ami103574_06315	COG1121	(ABC) transporter
Ami103574_06320	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Ami103574_06340	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Ami103574_06345	COG2610	gluconate transmembrane transporter activity
Ami103574_06350	COG3246	L-lysine catabolic process to acetate
Ami103574_06355	COG1250	3-hydroxyacyl-CoA dehydrogenase
Ami103574_06375	COG0583	DNA-binding transcription factor activity
Ami103574_06400	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
Ami103574_06415	COG2081	HI0933 family
Ami103574_06420	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
Ami103574_06425	COG4124	Belongs to the glycosyl hydrolase 26 family
Ami103574_06425	COG2730	Belongs to the glycosyl hydrolase 5 (cellulase A) family
Ami103574_06440	COG2195	Cleaves the N-terminal amino acid of tripeptides
Ami103574_06455	COG4565	transcriptional regulatory protein
Ami103574_06470	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
Ami103574_06515	COG3693	PFAM glycoside hydrolase, family 10
Ami103574_06535	COG1074	ATP-dependent DNA helicase activity
Ami103574_06545	COG4187	Peptidase family M20/M25/M40
Ami103574_06560	COG0616	signal peptide processing
Ami103574_06565	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
Ami103574_06570	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
Ami103574_06575	COG0228	four-way junction DNA binding
Ami103574_06585	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
Ami103574_06590	COG0336	Belongs to the RNA methyltransferase TrmD family
Ami103574_06600	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
Ami103574_06605	COG1799	cell septum assembly
Ami103574_06615	COG3599	regulation of cell shape
Ami103574_06620	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
Ami103574_06625	COG0564	pseudouridine synthase activity
Ami103574_06645	COG1561	YicC-like family, N-terminal region
Ami103574_06650	COG0194	GDP metabolic process
Ami103574_06655	COG1758	RNA polymerase activity
Ami103574_06665	COG0052	Belongs to the universal ribosomal protein uS2 family
Ami103574_06670	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Ami103574_06675	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Ami103574_06680	COG0528	UMP kinase activity
Ami103574_06685	COG0233	cytoplasmic translational termination
Ami103574_06690	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
Ami103574_06695	COG0575	Belongs to the CDS family
Ami103574_06700	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
Ami103574_06705	COG0750	zinc metalloprotease
Ami103574_06710	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
Ami103574_06725	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
Ami103574_06735	COG0779	Required for maturation of 30S ribosomal subunits
Ami103574_06740	COG0195	Participates in both transcription termination and antitermination
Ami103574_06750	COG1358	cellular component organization or biogenesis
Ami103574_06755	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
Ami103574_06760	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
Ami103574_06765	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
Ami103574_06770	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
Ami103574_06775	COG0196	riboflavin kinase activity
Ami103574_06780	COG4251	negative regulation of phosphorylation
Ami103574_06780	COG2203	Gaf domain
Ami103574_06780	COG3706	GGDEF domain
Ami103574_06780	COG5001	Diguanylate cyclase
Ami103574_06785	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
Ami103574_06790	COG1185	polyribonucleotide nucleotidyltransferase activity
Ami103574_06795	COG1476	TRANSCRIPTIONal
Ami103574_06800	COG1368	sulfuric ester hydrolase activity
Ami103574_06810	COG0745	RESPONSE REGULATOR receiver
Ami103574_06815	COG5002	protein histidine kinase activity
Ami103574_06820	COG1136	(ABC) transporter
Ami103574_06820	COG0577	efflux transmembrane transporter activity
Ami103574_06830	COG3275	phosphorelay sensor kinase activity
Ami103574_06835	COG3279	Response regulator of the LytR AlgR family
Ami103574_06850	COG0427	acetyl-CoA hydrolase
Ami103574_06915	COG1247	-acetyltransferase
Ami103574_06930	COG1131	(ABC) transporter
Ami103574_06955	COG3829	transcription factor binding
Ami103574_06960	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
Ami103574_06965	COG0833	amino acid
Ami103574_06970	COG4187	Peptidase family M20/M25/M40
Ami103574_06980	COG1024	Enoyl-CoA hydratase
Ami103574_06995	COG0494	nUDIX hydrolase
Ami103574_07005	COG2205	protein histidine kinase activity
Ami103574_07005	COG0784	Response regulator, receiver
Ami103574_07010	COG3437	response regulator, receiver
Ami103574_07025	COG1285	pathogenesis
Ami103574_07035	COG0137	argininosuccinate synthase activity
Ami103574_07040	COG0812	UDP-N-acetylmuramate dehydrogenase activity
Ami103574_07050	COG3457	Alanine racemase
Ami103574_07055	COG1660	Displays ATPase and GTPase activities
Ami103574_07060	COG3246	L-lysine catabolic process to acetate
Ami103574_07065	COG1481	regulation of sporulation
Ami103574_07070	COG2848	UPF0210 protein
Ami103574_07080	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Ami103574_07110	COG3279	Response regulator of the LytR AlgR family
Ami103574_07120	COG1361	Conserved repeat domain
Ami103574_07145	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
Ami103574_07150	COG0438	transferase activity, transferring glycosyl groups
Ami103574_07190	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Ami103574_07195	COG0166	Belongs to the GPI family
Ami103574_07215	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
Ami103574_07220	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
Ami103574_07225	COG1176	ABC-type spermidine putrescine transport system, permease component I
Ami103574_07230	COG1177	transmembrane transport
Ami103574_07235	COG3842	ATPase activity
Ami103574_07240	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Ami103574_07245	COG1397	ADP-ribosylglycohydrolase
Ami103574_07255	COG0668	transmembrane transport
Ami103574_07260	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
Ami103574_07265	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
Ami103574_07270	COG2239	Acts as a magnesium transporter
Ami103574_07275	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
Ami103574_07275	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
Ami103574_07280	COG2337	Toxic component of a toxin-antitoxin (TA) module
Ami103574_07305	COG3959	Transketolase, thiamine diphosphate binding domain
Ami103574_07310	COG3958	Transketolase
Ami103574_07325	COG0512	Glutamine amidotransferase of anthranilate synthase
Ami103574_07325	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
Ami103574_07330	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
Ami103574_07335	COG0134	indole-3-glycerol-phosphate synthase activity
Ami103574_07345	COG0133	tryptophan synthase activity
Ami103574_07350	COG0159	tryptophan synthase activity
Ami103574_07365	COG2884	Cell division ATP-binding protein ftsE
Ami103574_07370	COG2177	Part of the ABC transporter FtsEX involved in
Ami103574_07375	COG0739	heme binding
Ami103574_07380	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
Ami103574_07380	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
Ami103574_07395	COG3409	Peptidoglycan-binding domain 1 protein
Ami103574_07395	COG0793	Belongs to the peptidase S41A family
Ami103574_07400	COG2972	Histidine kinase
Ami103574_07405	COG2207	Transcriptional regulator
Ami103574_07450	COG4869	propanediol catabolic process
Ami103574_07460	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
Ami103574_07470	COG1012	belongs to the aldehyde dehydrogenase family
Ami103574_07475	COG4656	Part of a membrane complex involved in electron transport
Ami103574_07500	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
Ami103574_07505	COG4496	protein, YerC YecD
Ami103574_07515	COG2137	regulation of response to DNA damage stimulus
Ami103574_07530	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
Ami103574_07535	COG0820	rRNA (adenine-C2-)-methyltransferase activity
Ami103574_07545	COG0697	spore germination
Ami103574_07550	COG0494	nUDIX hydrolase
Ami103574_07555	COG2340	Cysteine-rich secretory protein family
Ami103574_07590	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
Ami103574_07595	COG1132	(ABC) transporter
Ami103574_07600	COG0617	tRNA 3'-terminal CCA addition
Ami103574_07610	COG2949	membrane
Ami103574_07635	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
Ami103574_07635	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
Ami103574_07695	COG1937	Protein conserved in bacteria
Ami103574_07705	COG0601	transmembrane transport
Ami103574_07710	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Ami103574_07715	COG0444	Belongs to the ABC transporter superfamily
Ami103574_07720	COG1124	(ABC) transporter
Ami103574_07725	COG2111	Na H antiporter
Ami103574_07725	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
Ami103574_07735	COG3260	NADH ubiquinone oxidoreductase 20
Ami103574_07745	COG0649	NAD binding
Ami103574_07765	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
Ami103574_07800	COG3340	Belongs to the peptidase S51 family
Ami103574_07805	COG2211	Major facilitator Superfamily
Ami103574_07810	COG0789	Transcriptional regulator
Ami103574_07810	COG4978	Transcriptional regulator
Ami103574_07815	COG2264	protein methyltransferase activity
Ami103574_07820	COG1385	rRNA (uridine-N3-)-methyltransferase activity
Ami103574_07825	COG2033	superoxide reductase activity
Ami103574_07835	COG0726	polysaccharide deacetylase
Ami103574_07865	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Ami103574_07870	COG0537	adenosine 5'-monophosphoramidase activity
Ami103574_07875	COG0828	Belongs to the bacterial ribosomal protein bS21 family
Ami103574_07885	COG1959	2 iron, 2 sulfur cluster binding
Ami103574_07905	COG1702	phosphate starvation-inducible protein PhoH
Ami103574_07910	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
Ami103574_07915	COG0295	cytidine deaminase activity
Ami103574_07920	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
Ami103574_07930	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Ami103574_07940	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Ami103574_07940	COG0574	Belongs to the PEP-utilizing enzyme family
Ami103574_07955	COG2720	vancomycin resistance protein
Ami103574_07975	COG0740	serine-type endopeptidase activity
Ami103574_07985	COG1283	sodium-dependent phosphate transmembrane transporter activity
Ami103574_07990	COG0745	RESPONSE REGULATOR receiver
Ami103574_07995	COG5002	protein histidine kinase activity
Ami103574_08000	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Ami103574_08000	COG4651	solute:proton antiporter activity
Ami103574_08045	COG3290	protein histidine kinase activity
Ami103574_08045	COG3829	transcription factor binding
Ami103574_08050	COG2814	Major facilitator Superfamily
Ami103574_08055	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
Ami103574_08060	COG3246	L-lysine catabolic process to acetate
Ami103574_08075	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
Ami103574_08080	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
Ami103574_08080	COG0539	negative regulation of cytoplasmic translation
Ami103574_08085	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
Ami103574_08090	COG0497	DNA recombination
Ami103574_08095	COG1438	arginine binding
Ami103574_08100	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
Ami103574_08105	COG0632	four-way junction helicase activity
Ami103574_08115	COG2385	sporulation resulting in formation of a cellular spore
Ami103574_08125	COG0343	queuine tRNA-ribosyltransferase activity
Ami103574_08130	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Ami103574_08180	COG2217	Heavy metal translocating P-type atpase
Ami103574_08200	COG2814	Major facilitator Superfamily
Ami103574_08225	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
Ami103574_08235	COG2169	Transcriptional regulator
Ami103574_08245	COG1522	sequence-specific DNA binding
Ami103574_08255	COG3708	Transcriptional regulator
Ami103574_08255	COG2207	Transcriptional regulator
Ami103574_08285	COG0739	heme binding
Ami103574_08290	COG3693	PFAM glycoside hydrolase, family 10
Ami103574_08300	COG1366	Belongs to the anti-sigma-factor antagonist family
Ami103574_08305	COG2208	phosphoserine phosphatase activity
Ami103574_08320	COG2274	protein secretion by the type I secretion system
Ami103574_08330	COG0789	Transcriptional regulator
Ami103574_08350	COG1297	OPT oligopeptide transporter protein
Ami103574_08355	COG2195	Cleaves the N-terminal amino acid of tripeptides
Ami103574_08370	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Ami103574_08375	COG2972	Histidine kinase
Ami103574_08375	COG0745	RESPONSE REGULATOR receiver
Ami103574_08380	COG3279	Response regulator of the LytR AlgR family
Ami103574_08390	COG0697	spore germination
Ami103574_08395	COG1917	Cupin 2, conserved barrel domain protein
Ami103574_08395	COG2207	Transcriptional regulator
Ami103574_08415	COG3384	dioxygenase
Ami103574_08420	COG1741	Belongs to the pirin family
Ami103574_08425	COG1162	GTPase activity
Ami103574_08445	COG0583	DNA-binding transcription factor activity
Ami103574_08470	COG1194	a g-specific adenine glycosylase
Ami103574_08475	COG3290	protein histidine kinase activity
Ami103574_08475	COG0840	transmembrane signaling receptor activity
Ami103574_08480	COG0840	transmembrane signaling receptor activity
Ami103574_08505	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Ami103574_08510	COG0227	Belongs to the bacterial ribosomal protein bL28 family
Ami103574_08525	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
Ami103574_08535	COG0742	ribosomal rna small subunit methyltransferase
Ami103574_08555	COG1323	Belongs to the UPF0348 family
Ami103574_08560	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
Ami103574_08565	COG0333	Belongs to the bacterial ribosomal protein bL32 family
Ami103574_08600	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Ami103574_08605	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Ami103574_08610	COG1058	Belongs to the CinA family
Ami103574_08610	COG1546	Belongs to the CinA family
Ami103574_08615	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
Ami103574_08620	COG0261	This protein binds to 23S rRNA in the presence of protein L20
Ami103574_08625	COG0211	Belongs to the bacterial ribosomal protein bL27 family
Ami103574_08630	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
Ami103574_08645	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Ami103574_08655	COG1555	photosystem II stabilization
Ami103574_08655	COG1596	polysaccharide export
Ami103574_08665	COG0750	zinc metalloprotease
Ami103574_08670	COG0745	RESPONSE REGULATOR receiver
Ami103574_08675	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
Ami103574_08690	COG1104	cysteine desulfurase activity
Ami103574_08725	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Ami103574_08730	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
Ami103574_08735	COG1570	exodeoxyribonuclease VII activity
Ami103574_08745	COG0142	geranyltranstransferase activity
Ami103574_08750	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
Ami103574_08755	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
Ami103574_08760	COG0436	Aminotransferase
Ami103574_08765	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
Ami103574_08770	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
Ami103574_08775	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
Ami103574_08780	COG4974	Belongs to the 'phage' integrase family
Ami103574_08785	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
Ami103574_08790	COG0398	Pfam SNARE associated Golgi protein
Ami103574_08805	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
Ami103574_08880	COG4472	Bacterial protein of unknown function (DUF965)
Ami103574_08885	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
Ami103574_08910	COG3854	ATPases associated with a variety of cellular activities
Ami103574_08915	COG1253	flavin adenine dinucleotide binding
Ami103574_08925	COG4122	O-methyltransferase activity
Ami103574_08930	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
Ami103574_08935	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
Ami103574_08940	COG3679	Belongs to the UPF0342 family
Ami103574_08945	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
Ami103574_08950	COG0495	leucyl-tRNA aminoacylation
Ami103574_08955	COG0799	negative regulation of ribosome biogenesis
Ami103574_08960	COG1713	HD superfamily hydrolase involved in NAD metabolism
Ami103574_08975	COG0124	histidyl-tRNA synthetase
Ami103574_08980	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Ami103574_08985	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ami103574_08990	COG1490	D-aminoacyl-tRNA deacylase activity
Ami103574_08995	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Ami103574_09000	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Ami103574_09000	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Ami103574_09010	COG1862	Preprotein translocase
Ami103574_09030	COG0237	dephospho-CoA kinase activity
Ami103574_09035	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Ami103574_09035	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Ami103574_09050	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
Ami103574_09055	COG1253	flavin adenine dinucleotide binding
Ami103574_09060	COG0789	Transcriptional regulator
Ami103574_09065	COG1131	(ABC) transporter
Ami103574_09075	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
Ami103574_09085	COG3191	aminopeptidase activity
Ami103574_09105	COG0217	transcriptional regulatory protein
Ami103574_09135	COG2384	SAM-dependent methyltransferase
Ami103574_09140	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Ami103574_09145	COG0358	DNA primase activity
Ami103574_09150	COG0232	Belongs to the dGTPase family. Type 2 subfamily
Ami103574_09155	COG0306	phosphate transporter
Ami103574_09170	COG0693	protein deglycase activity
Ami103574_09170	COG0753	catalase activity
Ami103574_09180	COG1492	cobalamin metabolic process
Ami103574_09185	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Ami103574_09205	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
Ami103574_09210	COG1797	cobyrinic acid a,c-diamide synthase activity
Ami103574_09230	COG0612	Peptidase, M16
Ami103574_09235	COG0726	polysaccharide deacetylase
Ami103574_09250	COG1696	Membrane protein involved in D-alanine export
Ami103574_09290	COG0659	secondary active sulfate transmembrane transporter activity
Ami103574_09310	COG2268	Band 7 protein
Ami103574_09320	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
Ami103574_09345	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
Ami103574_09370	COG0006	proline dipeptidase activity
Ami103574_09385	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
Ami103574_09395	COG1404	Belongs to the peptidase S8 family
Ami103574_09400	COG0419	ATPase involved in DNA repair
Ami103574_09405	COG0420	3'-5' exonuclease activity
Ami103574_09410	COG1649	PFAM Uncharacterised BCR, COG1649
Ami103574_09415	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
Ami103574_09420	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
Ami103574_09420	COG3153	acetyltransferase
Ami103574_09435	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Ami103574_09435	COG2199	diguanylate cyclase activity
Ami103574_09450	COG4475	Protein of unknown function (DUF436)
Ami103574_09490	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
Ami103574_09495	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
Ami103574_09510	COG1022	Amp-dependent synthetase and ligase
Ami103574_09515	COG0813	purine-nucleoside phosphorylase activity
Ami103574_09520	COG0840	transmembrane signaling receptor activity
Ami103574_09530	COG4869	propanediol catabolic process
Ami103574_09535	COG1454	alcohol dehydrogenase
Ami103574_09535	COG1012	belongs to the aldehyde dehydrogenase family
Ami103574_09545	COG4656	Part of a membrane complex involved in electron transport
Ami103574_09550	COG1250	3-hydroxyacyl-CoA dehydrogenase
Ami103574_09555	COG4716	Myosin-crossreactive antigen
Ami103574_09560	COG0484	heat shock protein binding
Ami103574_09565	COG0443	Heat shock 70 kDa protein
Ami103574_09570	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
Ami103574_09575	COG1420	regulation of RNA biosynthetic process
Ami103574_09580	COG0410	ABC transporter
Ami103574_09595	COG0559	Belongs to the binding-protein-dependent transport system permease family
Ami103574_09625	COG3655	Transcriptional regulator
Ami103574_09640	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
Ami103574_09650	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Ami103574_09665	COG0481	GTPase activity
Ami103574_09680	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
Ami103574_09685	COG0268	Binds directly to 16S ribosomal RNA
Ami103574_09690	COG2207	Transcriptional regulator
Ami103574_09690	COG1917	Cupin 2, conserved barrel domain protein
Ami103574_09705	COG2235	arginine
Ami103574_09710	COG3835	regulator
Ami103574_09720	COG0460	homoserine dehydrogenase
Ami103574_09725	COG3949	Membrane
Ami103574_09730	COG2962	Rard protein
Ami103574_09745	COG1164	Oligoendopeptidase f
Ami103574_09750	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
Ami103574_09755	COG0564	pseudouridine synthase activity
Ami103574_09760	COG3706	GGDEF domain
Ami103574_09765	COG0346	lactoylglutathione lyase activity
Ami103574_09875	COG2323	membrane
Ami103574_09885	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
Ami103574_09890	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
Ami103574_09895	COG2267	carboxylic ester hydrolase activity
Ami103574_09900	COG0776	regulation of translation
Ami103574_09905	COG3956	TIGRFAM MazG family protein
Ami103574_09915	COG0402	S-adenosylhomocysteine deaminase activity
Ami103574_09920	COG2002	toxin-antitoxin pair type II binding
Ami103574_09925	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
Ami103574_09930	COG0193	aminoacyl-tRNA hydrolase activity
Ami103574_09940	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
Ami103574_09945	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Ami103574_09950	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
Ami103574_09955	COG2088	sporulation resulting in formation of a cellular spore
Ami103574_09960	COG0492	ferredoxin-NADP+ reductase activity
Ami103574_09965	COG3118	belongs to the thioredoxin family
Ami103574_09980	COG0741	lytic transglycosylase activity
Ami103574_09985	COG2252	PERMEase
Ami103574_09995	COG0768	penicillin binding
Ami103574_10010	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
Ami103574_10020	COG1595	DNA-templated transcription, initiation
Ami103574_10025	COG0450	alkyl hydroperoxide reductase
Ami103574_10030	COG0697	spore germination
Ami103574_10040	COG2378	regulation of single-species biofilm formation
Ami103574_10045	COG0167	dihydroorotate dehydrogenase activity
Ami103574_10050	COG0543	2 iron, 2 sulfur cluster binding
Ami103574_10055	COG0284	orotidine-5'-phosphate decarboxylase activity
Ami103574_10060	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
Ami103574_10075	COG0019	diaminopimelate decarboxylase activity
Ami103574_10120	COG1725	Transcriptional regulator
Ami103574_10125	COG1131	(ABC) transporter
Ami103574_10135	COG1982	Orn Lys Arg decarboxylase major
Ami103574_10140	COG2195	Cleaves the N-terminal amino acid of tripeptides
Ami103574_10145	COG2081	HI0933 family
Ami103574_10150	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ami103574_10170	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Ami103574_10170	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
Ami103574_10180	COG1131	(ABC) transporter
Ami103574_10210	COG2205	protein histidine kinase activity
Ami103574_10215	COG0745	RESPONSE REGULATOR receiver
Ami103574_10220	COG2608	mercury ion transmembrane transporter activity
Ami103574_10230	COG2217	Heavy metal translocating P-type atpase
Ami103574_10240	COG2217	Heavy metal translocating P-type atpase
Ami103574_10250	COG1136	(ABC) transporter
Ami103574_10255	COG2205	protein histidine kinase activity
Ami103574_10255	COG2202	Pas domain
Ami103574_10260	COG0745	RESPONSE REGULATOR receiver
Ami103574_10335	COG1114	Component of the transport system for branched-chain amino acids
Ami103574_10350	COG1472	Belongs to the glycosyl hydrolase 3 family
Ami103574_10360	COG0789	Transcriptional regulator
Ami103574_10385	COG0789	Transcriptional regulator
Ami103574_10450	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
Ami103574_10485	COG1013	pyruvate-flavodoxin oxidoreductase activity
Ami103574_10490	COG0674	pyruvate-flavodoxin oxidoreductase activity
Ami103574_10500	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
Ami103574_10520	COG1489	DNA binding
Ami103574_10525	COG0351	phosphomethylpyrimidine kinase
Ami103574_10525	COG0352	thiamine-phosphate diphosphorylase activity
Ami103574_10530	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Ami103574_10540	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
Ami103574_10545	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
Ami103574_10550	COG1686	Belongs to the peptidase S11 family
Ami103574_10560	COG0745	RESPONSE REGULATOR receiver
Ami103574_10565	COG2205	protein histidine kinase activity
Ami103574_10585	COG0488	(ABC) transporter
Ami103574_10585	COG0488	(ABC) transporter
Ami103574_10590	COG0426	domain, Protein
Ami103574_10595	COG1960	acyl-CoA dehydrogenase activity
Ami103574_10610	COG0833	amino acid
Ami103574_10615	COG0784	Response regulator, receiver
Ami103574_10620	COG5002	protein histidine kinase activity
Ami103574_10625	COG0833	amino acid
Ami103574_10630	COG1012	belongs to the aldehyde dehydrogenase family
Ami103574_10670	COG3206	protein involved in exopolysaccharide biosynthesis
Ami103574_10680	COG1395	domain, Protein
Ami103574_10685	COG1396	sequence-specific DNA binding
Ami103574_10695	COG1396	sequence-specific DNA binding
Ami103574_10700	COG0232	Belongs to the dGTPase family. Type 2 subfamily
Ami103574_10710	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
Ami103574_10770	COG2003	Belongs to the UPF0758 family
Ami103574_10985	COG1404	Belongs to the peptidase S8 family
Ami103574_10995	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Ami103574_10995	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Ami103574_11015	COG0281	malic enzyme
Ami103574_11020	COG1027	Aspartate ammonia-lyase
Ami103574_11025	COG0583	DNA-binding transcription factor activity
Ami103574_11040	COG0531	amino acid
Ami103574_11045	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
Ami103574_11055	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ami103574_11065	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
Ami103574_11085	COG1024	Enoyl-CoA hydratase
Ami103574_11100	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Ami103574_11105	COG0095	Lipoate-protein ligase
Ami103574_11125	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Ami103574_11140	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ami103574_11155	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
Ami103574_11170	COG0658	competence protein
Ami103574_11170	COG2333	competence protein COMEC
Ami103574_11180	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
Ami103574_11185	COG1288	antiporter activity
Ami103574_11190	COG3829	transcription factor binding
Ami103574_11190	COG3290	protein histidine kinase activity
Ami103574_11215	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Ami103574_11225	COG0424	maF-like protein
Ami103574_11235	COG0281	malic enzyme
Ami103574_11240	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
Ami103574_11245	COG2086	electron transfer activity
Ami103574_11250	COG1960	acyl-CoA dehydrogenase activity
Ami103574_11270	COG0301	tRNA thio-modification
Ami103574_11280	COG1418	mRNA catabolic process
Ami103574_11285	COG0772	Belongs to the SEDS family
Ami103574_11290	COG2894	cell division
Ami103574_11310	COG1077	Cell shape determining protein MreB Mrl
Ami103574_11315	COG2003	Belongs to the UPF0758 family
Ami103574_11330	COG5001	Diguanylate cyclase
Ami103574_11330	COG3300	MHYT domain
Ami103574_11335	COG5002	protein histidine kinase activity
Ami103574_11335	COG5001	Diguanylate cyclase
Ami103574_11335	COG3447	MASE1 domain protein
Ami103574_11345	COG1126	abc transporter atp-binding protein
Ami103574_11350	COG4215	(ABC) transporter
Ami103574_11365	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
Ami103574_11370	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Ami103574_11375	COG1873	PFAM PRC-barrel domain
Ami103574_11380	COG0544	peptidyl-prolyl cis-trans isomerase activity
Ami103574_11385	COG1191	sigma factor activity
Ami103574_11395	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
Ami103574_11400	COG1748	Saccharopine dehydrogenase
Ami103574_11405	COG0493	'glutamate synthase
Ami103574_11410	COG0069	glutamate synthase activity
Ami103574_11410	COG0070	glutamate synthase
Ami103574_11410	COG0067	glutamate synthase
Ami103574_11425	COG1191	sigma factor activity
Ami103574_11440	COG0291	Belongs to the bacterial ribosomal protein bL35 family
Ami103574_11445	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
Ami103574_11450	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Ami103574_11460	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
Ami103574_11465	COG2247	cell wall binding repeat
Ami103574_11465	COG0860	N-Acetylmuramoyl-L-alanine amidase
Ami103574_11470	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
Ami103574_11485	COG1357	PFAM Pentapeptide repeats (8 copies)
Ami103574_11500	COG0577	efflux transmembrane transporter activity
Ami103574_11500	COG1136	(ABC) transporter
Ami103574_11520	COG1136	(ABC) transporter
Ami103574_11525	COG1136	(ABC) transporter
Ami103574_11525	COG0577	efflux transmembrane transporter activity
Ami103574_11530	COG0577	efflux transmembrane transporter activity
Ami103574_11530	COG1136	(ABC) transporter
Ami103574_11540	COG3470	protein probably involved in high-affinity Fe2 transport
Ami103574_11545	COG0672	)-iron permease
Ami103574_11550	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ami103574_11555	COG2217	Heavy metal translocating P-type atpase
Ami103574_11585	COG1454	alcohol dehydrogenase
Ami103574_11605	COG3447	MASE1 domain protein
Ami103574_11605	COG5002	protein histidine kinase activity
Ami103574_11605	COG5001	Diguanylate cyclase
Ami103574_11610	COG2199	diguanylate cyclase activity
Ami103574_11615	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
Ami103574_11675	COG0488	(ABC) transporter
Ami103574_11705	COG3290	protein histidine kinase activity
Ami103574_11715	COG0772	Belongs to the SEDS family
Ami103574_11725	COG0583	DNA-binding transcription factor activity
Ami103574_11740	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
Ami103574_11745	COG1162	GTPase activity
Ami103574_11750	COG2815	serine threonine protein kinase
Ami103574_11750	COG0515	serine threonine protein kinase
Ami103574_11760	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
Ami103574_11760	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Ami103574_11765	COG2738	Putative neutral zinc metallopeptidase
Ami103574_11770	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
Ami103574_11780	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
Ami103574_11790	COG1242	4 iron, 4 sulfur cluster binding
Ami103574_11795	COG1435	thymidine kinase activity
Ami103574_11935	COG1739	Uncharacterized protein family UPF0029
Ami103574_11940	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
Ami103574_11950	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
Ami103574_11955	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
Ami103574_11960	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
Ami103574_11965	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Ami103574_11970	COG0758	DNA mediated transformation
Ami103574_11975	COG0606	chelatase, subunit chli
Ami103574_11980	COG0792	nuclease activity
Ami103574_11985	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
Ami103574_11995	COG0561	phosphatase activity
Ami103574_12005	COG0569	domain protein
Ami103574_12005	COG0475	glutathione-regulated potassium exporter activity
Ami103574_12010	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Ami103574_12015	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Ami103574_12020	COG0517	IMP dehydrogenase activity
Ami103574_12025	COG0557	exoribonuclease II activity
Ami103574_12035	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
Ami103574_12045	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Ami103574_12050	COG0148	phosphopyruvate hydratase activity
Ami103574_12060	COG0126	phosphoglycerate kinase activity
Ami103574_12065	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
Ami103574_12070	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
Ami103574_12080	COG0460	homoserine dehydrogenase
Ami103574_12085	COG0653	protein targeting
Ami103574_12095	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
Ami103574_12110	COG5012	cobalamin binding
Ami103574_12130	COG5012	cobalamin binding
Ami103574_12135	COG1917	Cupin 2, conserved barrel domain protein
Ami103574_12135	COG2207	Transcriptional regulator
Ami103574_12155	COG0840	transmembrane signaling receptor activity
Ami103574_12160	COG0840	transmembrane signaling receptor activity
Ami103574_12180	COG4974	Belongs to the 'phage' integrase family
Ami103574_12185	COG0732	type I restriction modification DNA specificity domain
Ami103574_12200	COG0840	transmembrane signaling receptor activity
Ami103574_12210	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Ami103574_12240	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
Ami103574_12245	COG0473	3-isopropylmalate dehydrogenase activity
Ami103574_12250	COG1802	Transcriptional regulator
Ami103574_12260	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
Ami103574_12265	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
Ami103574_12270	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
Ami103574_12275	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Ami103574_12280	COG0131	Imidazoleglycerol-phosphate dehydratase
Ami103574_12290	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
Ami103574_12295	COG0107	imidazoleglycerol-phosphate synthase activity
Ami103574_12300	COG0140	phosphoribosyl-ATP diphosphatase activity
Ami103574_12300	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
Ami103574_12310	COG1476	TRANSCRIPTIONal
Ami103574_12315	COG0205	6-phosphofructokinase activity
Ami103574_12325	COG1288	antiporter activity
Ami103574_12340	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
Ami103574_12345	COG0833	amino acid
Ami103574_12350	COG1477	protein flavinylation
Ami103574_12380	COG1252	NADH dehydrogenase
Ami103574_12465	COG1401	restriction endodeoxyribonuclease activity
Ami103574_12480	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Ami103574_12490	COG3835	regulator
Ami103574_12495	COG0789	Transcriptional regulator
Ami103574_12495	COG4978	Transcriptional regulator
Ami103574_12500	COG1720	tRNA m6t6A37 methyltransferase activity
Ami103574_12510	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
Ami103574_12515	COG2223	nitrite transmembrane transporter activity
Ami103574_12520	COG1028	Short-chain dehydrogenase reductase Sdr
Ami103574_12530	COG1592	Rubrerythrin
Ami103574_12565	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Ami103574_12570	COG1882	Formate acetyltransferase
Ami103574_12600	COG0457	Tetratricopeptide repeat
Ami103574_12600	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
Ami103574_12610	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Ami103574_12615	COG0018	arginyl-trna synthetase
Ami103574_12620	COG1683	Conserved Protein
Ami103574_12625	COG1193	negative regulation of DNA recombination
Ami103574_12630	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
Ami103574_12635	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ami103574_12635	COG0072	phenylalanine-tRNA ligase activity
Ami103574_12640	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
Ami103574_12645	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Ami103574_12650	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
Ami103574_12655	COG3856	small basic protein
Ami103574_12675	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
Ami103574_12680	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
Ami103574_12685	COG0772	Belongs to the SEDS family
Ami103574_12690	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
Ami103574_12695	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
Ami103574_12700	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
Ami103574_12705	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Ami103574_12710	COG0768	penicillin binding
Ami103574_12720	COG0275	rRNA processing
Ami103574_12725	COG2001	Belongs to the MraZ family
Ami103574_12740	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Ami103574_12745	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Ami103574_12750	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Ami103574_12755	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
Ami103574_12765	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
Ami103574_12780	COG0012	GTP binding
Ami103574_12785	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
Ami103574_12795	COG2002	toxin-antitoxin pair type II binding
Ami103574_12815	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
Ami103574_12820	COG1774	PSP1 C-terminal conserved region
Ami103574_12825	COG0470	DNA polymerase III
Ami103574_12830	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
Ami103574_12870	COG0628	permease
Ami103574_12885	COG1802	Transcriptional regulator
Ami103574_12900	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Ami103574_12905	COG0505	Belongs to the CarA family
Ami103574_12915	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
Ami103574_12920	COG0116	Belongs to the methyltransferase superfamily
Ami103574_12935	COG0726	polysaccharide deacetylase
Ami103574_12955	COG1609	Transcriptional regulator
Ami103574_12960	COG5001	Diguanylate cyclase
Ami103574_12985	COG1045	serine acetyltransferase
Ami103574_12995	COG1172	Belongs to the binding-protein-dependent transport system permease family
Ami103574_13000	COG1129	ABC transporter
Ami103574_13005	COG1869	D-ribose catabolic process
Ami103574_13010	COG1609	Transcriptional regulator
Ami103574_13035	COG0531	amino acid
Ami103574_13040	COG2204	response regulator
Ami103574_13045	COG5002	protein histidine kinase activity
Ami103574_13060	COG2814	Major facilitator Superfamily
Ami103574_13065	COG1566	PFAM secretion protein HlyD family protein
Ami103574_13080	COG3853	Toxic anion resistance protein (TelA)
Ami103574_13090	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
Ami103574_13100	COG2217	Heavy metal translocating P-type atpase
Ami103574_13105	COG0477	Major facilitator Superfamily
Ami103574_13120	COG0017	Asparaginyl-tRNA synthetase
Ami103574_13125	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
Ami103574_13135	COG3706	GGDEF domain
Ami103574_13155	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
Ami103574_13160	COG0681	Belongs to the peptidase S26 family
Ami103574_13165	COG0681	Belongs to the peptidase S26 family
Ami103574_13190	COG0191	fructose-bisphosphate aldolase activity
Ami103574_13210	COG1528	Iron-storage protein
Ami103574_13215	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
Ami103574_13225	COG0556	nucleotide-excision repair
Ami103574_13230	COG0372	Belongs to the citrate synthase family
Ami103574_13260	COG1129	ABC transporter
Ami103574_13260	COG0842	Transport permease protein
Ami103574_13265	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Ami103574_13265	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
Ami103574_13265	COG1013	pyruvate-flavodoxin oxidoreductase activity
Ami103574_13265	COG0674	pyruvate-flavodoxin oxidoreductase activity
Ami103574_13285	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
Ami103574_13290	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
Ami103574_13300	COG0519	Catalyzes the synthesis of GMP from XMP
Ami103574_13320	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
Ami103574_13330	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
Ami103574_13335	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
Ami103574_13345	COG1131	(ABC) transporter
Ami103574_13360	COG1454	alcohol dehydrogenase
Ami103574_13360	COG1012	belongs to the aldehyde dehydrogenase family
Ami103574_13395	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Ami103574_13400	COG1882	Formate acetyltransferase
Ami103574_13405	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
Ami103574_13415	COG2972	Histidine kinase
Ami103574_13425	COG2313	pseudouridylate synthase activity
Ami103574_13430	COG0622	Phosphoesterase
Ami103574_13435	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
Ami103574_13440	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Ami103574_13445	COG0049	tRNA binding
Ami103574_13450	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
Ami103574_13455	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
Ami103574_13460	COG0085	RNA polymerase activity
Ami103574_13465	COG0222	ribosome binding
Ami103574_13475	COG0081	regulation of translation
Ami103574_13480	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
Ami103574_13485	COG0250	Participates in transcription elongation, termination and antitermination
Ami103574_13490	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Ami103574_13495	COG0267	Belongs to the bacterial ribosomal protein bL33 family
Ami103574_13525	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
Ami103574_13540	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Ami103574_13555	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
Ami103574_13560	COG0215	cysteine-tRNA ligase activity
Ami103574_13570	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Ami103574_13575	COG1051	belongs to the nudix hydrolase family
Ami103574_13580	COG0442	prolyl-tRNA aminoacylation
Ami103574_13585	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Ami103574_13585	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Ami103574_13590	COG4956	integral membrane protein (PIN domain superfamily)
Ami103574_13600	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
Ami103574_13605	COG5002	protein histidine kinase activity
Ami103574_13610	COG0745	RESPONSE REGULATOR receiver
Ami103574_13615	COG0531	amino acid
Ami103574_13620	COG1716	ATPase activity
Ami103574_13620	COG5001	Diguanylate cyclase
Ami103574_13630	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
Ami103574_13635	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Ami103574_13640	COG0252	asparaginase activity
Ami103574_13645	COG0017	Asparaginyl-tRNA synthetase
Ami103574_13675	COG2204	response regulator
Ami103574_13700	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
Ami103574_13705	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Ami103574_13710	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
Ami103574_13715	COG1592	Rubrerythrin
Ami103574_13725	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Ami103574_13730	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
Ami103574_13740	COG4770	biotin carboxylase activity
Ami103574_13750	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
Ami103574_13760	COG2508	Transcriptional regulator
Ami103574_13760	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
Ami103574_13765	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
Ami103574_13770	COG0037	tRNA processing
Ami103574_13775	COG0488	(ABC) transporter
Ami103574_13825	COG2244	polysaccharide biosynthetic process
Ami103574_13860	COG2208	phosphoserine phosphatase activity
Ami103574_13870	COG0084	hydrolase, TatD family'
Ami103574_13885	COG0840	transmembrane signaling receptor activity
Ami103574_13900	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ami103574_13900	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ami103574_13910	COG1268	BioY protein
Ami103574_13915	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
Ami103574_13915	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
Ami103574_13930	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
Ami103574_13940	COG2378	regulation of single-species biofilm formation
Ami103574_13950	COG2119	membrane
Ami103574_13965	COG1120	ATPase activity
Ami103574_13980	COG0583	DNA-binding transcription factor activity
Ami103574_13995	COG3279	Response regulator of the LytR AlgR family
Ami103574_14015	COG0583	DNA-binding transcription factor activity
Ami103574_14050	COG0559	Belongs to the binding-protein-dependent transport system permease family
Ami103574_14065	COG0410	ABC transporter
Ami103574_14095	COG0326	Molecular chaperone. Has ATPase activity
Ami103574_14100	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Ami103574_14105	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
Ami103574_14135	COG1476	TRANSCRIPTIONal
Ami103574_14140	COG1464	Belongs to the NlpA lipoprotein family
Ami103574_14145	COG2011	ABC-type metal ion transport system permease component
Ami103574_14150	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
Ami103574_14155	COG0840	transmembrane signaling receptor activity
Ami103574_14160	COG0840	transmembrane signaling receptor activity
Ami103574_14165	COG0534	Mate efflux family protein
Ami103574_14170	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Ami103574_14180	COG1937	Protein conserved in bacteria
Ami103574_14185	COG1733	regulation of RNA biosynthetic process
Ami103574_14195	COG0628	permease
Ami103574_14210	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
Ami103574_14220	COG0010	Belongs to the arginase family
Ami103574_14230	COG3829	transcription factor binding
Ami103574_14240	COG1695	Transcriptional regulator
Ami103574_14270	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Ami103574_14280	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Ami103574_14300	COG0516	GMP reductase activity
Ami103574_14300	COG0517	IMP dehydrogenase activity
Ami103574_14305	COG1876	peptidase activity
Ami103574_14325	COG0459	protein refolding
Ami103574_14330	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
Ami103574_14335	COG1811	Na channel or pump
Ami103574_14355	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
Ami103574_14360	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Ami103574_14365	COG0488	(ABC) transporter
Ami103574_14380	COG0456	acetyltransferase
Ami103574_14385	COG1214	PFAM Peptidase M22, glycoprotease
Ami103574_14390	COG0802	atpase or kinase
Ami103574_14400	COG1129	ABC transporter
Ami103574_14420	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
Ami103574_14425	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Ami103574_14435	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
Ami103574_14445	COG1773	rubredoxin
Ami103574_14445	COG1592	Rubrerythrin
Ami103574_14465	COG3457	Alanine racemase
Ami103574_14470	COG0318	PFAM AMP-dependent synthetase and ligase
Ami103574_14475	COG0318	PFAM AMP-dependent synthetase and ligase
Ami103574_14485	COG2234	aminopeptidase activity
Ami103574_14510	COG1733	regulation of RNA biosynthetic process
Ami103574_14520	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Ami103574_14525	COG0488	(ABC) transporter
Ami103574_14530	COG4820	ethanolamine utilization protein (EutJ)
Ami103574_14550	COG3192	ethanolamine utilization protein
Ami103574_14595	COG4303	Ethanolamine ammonia lyase large subunit
Ami103574_14655	COG1132	(ABC) transporter
Ami103574_14670	COG1278	Cold shock
Ami103574_14690	COG2205	protein histidine kinase activity
Ami103574_14695	COG0745	RESPONSE REGULATOR receiver
Ami103574_14700	COG0745	RESPONSE REGULATOR receiver
Ami103574_14705	COG5002	protein histidine kinase activity
Ami103574_14720	COG0175	sulfate reduction
Ami103574_14735	COG1609	Transcriptional regulator
Ami103574_14740	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
Ami103574_14745	COG4208	sulfate ABC transporter
Ami103574_14750	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
Ami103574_14755	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
Ami103574_14760	COG1132	(ABC) transporter
Ami103574_14765	COG1120	ATPase activity
Ami103574_14770	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Ami103574_14775	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
Ami103574_14780	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
Ami103574_14790	COG1609	Transcriptional regulator
Ami103574_14790	COG2207	Transcriptional regulator
Ami103574_14795	COG2132	Multicopper oxidase
Ami103574_14865	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
Ami103574_14875	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
Ami103574_14880	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Ami103574_14885	COG1028	Short-chain dehydrogenase reductase Sdr
Ami103574_14890	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
Ami103574_14900	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Ami103574_14905	COG0438	transferase activity, transferring glycosyl groups
Ami103574_14910	COG0546	phosphoglycolate phosphatase activity
Ami103574_14920	COG2183	response to ionizing radiation
Ami103574_14930	COG0653	protein targeting
Ami103574_14935	COG1253	flavin adenine dinucleotide binding
Ami103574_14940	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
Ami103574_14945	COG0527	aspartate kinase activity
Ami103574_14950	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
Ami103574_14965	COG0860	N-Acetylmuramoyl-L-alanine amidase
Ami103574_14970	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
Ami103574_14980	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Ami103574_14985	COG5012	cobalamin binding
Ami103574_14990	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
Ami103574_14995	COG1193	negative regulation of DNA recombination
Ami103574_15005	COG1509	lysine 2,3-aminomutase activity
Ami103574_15010	COG0604	alcohol dehydrogenase
Ami103574_15015	COG0604	alcohol dehydrogenase
Ami103574_15025	COG1607	acyl-coa hydrolase
Ami103574_15030	COG0165	Argininosuccinate lyase
Ami103574_15040	COG2195	Cleaves the N-terminal amino acid of tripeptides
Ami103574_15060	COG1132	(ABC) transporter
Ami103574_15070	COG0445	tRNA wobble uridine modification
Ami103574_15070	COG0445	tRNA wobble uridine modification
Ami103574_15085	COG2204	response regulator
Ami103574_15120	COG0833	amino acid
Ami103574_15125	COG4187	Peptidase family M20/M25/M40
Ami103574_15135	COG3829	transcription factor binding
Ami103574_15140	COG0789	Transcriptional regulator
Ami103574_15140	COG4978	Transcriptional regulator
Ami103574_15145	COG3437	response regulator, receiver
Ami103574_15165	COG1187	pseudouridine synthase activity
Ami103574_15170	COG1360	Flagellar Motor Protein
Ami103574_15175	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
Ami103574_15180	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Ami103574_15190	COG3850	Histidine kinase
Ami103574_15190	COG5002	protein histidine kinase activity
Ami103574_15220	COG3209	COG3209 Rhs family protein
Ami103574_15240	COG0840	transmembrane signaling receptor activity
Ami103574_15250	COG0151	Belongs to the GarS family
Ami103574_15255	COG0138	bifunctional purine biosynthesis protein purh
Ami103574_15260	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
Ami103574_15265	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
Ami103574_15270	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
Ami103574_15275	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
Ami103574_15280	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
Ami103574_15285	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
Ami103574_15295	COG1346	cytolysis
Ami103574_15315	COG1686	Belongs to the peptidase S11 family
Ami103574_15335	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
Ami103574_15350	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
Ami103574_15355	COG1760	l-serine dehydratase
Ami103574_15360	COG1760	l-serine dehydratase
Ami103574_15365	COG0741	lytic transglycosylase activity
Ami103574_15370	COG0372	Belongs to the citrate synthase family
Ami103574_15375	COG3706	GGDEF domain
Ami103574_15380	COG0355	proton-transporting ATP synthase activity, rotational mechanism
Ami103574_15385	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
Ami103574_15390	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
Ami103574_15395	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
Ami103574_15400	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
Ami103574_15405	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
Ami103574_15410	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
Ami103574_15415	COG0356	it plays a direct role in the translocation of protons across the membrane
Ami103574_15425	COG0534	Mate efflux family protein
Ami103574_15430	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
Ami103574_15435	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
Ami103574_15450	COG1534	Rna-binding protein
Ami103574_15455	COG5002	protein histidine kinase activity
Ami103574_15455	COG0784	Response regulator, receiver
Ami103574_15465	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
Ami103574_15475	COG1126	abc transporter atp-binding protein
Ami103574_15480	COG0765	amino acid transport
Ami103574_15485	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Ami103574_15495	COG0183	Belongs to the thiolase family
Ami103574_15505	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
Ami103574_15510	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Ami103574_15515	COG5002	protein histidine kinase activity
Ami103574_15520	COG0745	RESPONSE REGULATOR receiver
Ami103574_15530	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
Ami103574_15535	COG0581	inorganic phosphate transmembrane transporter activity
Ami103574_15540	COG0573	inorganic phosphate transmembrane transporter activity
Ami103574_15550	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
Ami103574_15560	COG1122	ATPase activity
Ami103574_15565	COG0310	cobalt ion transport
Ami103574_15575	COG0469	pyruvate kinase activity
Ami103574_15595	COG0019	diaminopimelate decarboxylase activity
Ami103574_15605	COG2204	response regulator
Ami103574_15650	COG2801	Transposase and inactivated derivatives