locus-tag class description Ami3637_00010 PF00664 ABC transporter transmembrane region Ami3637_00010 PF00005 ABC transporter Ami3637_00025 PF02735 Ku70/Ku80 beta-barrel domain Ami3637_00035 PF01588 Putative tRNA binding domain Ami3637_00035 PF09334 tRNA synthetases class I (M) Ami3637_00035 PF08264 Anticodon-binding domain of tRNA Ami3637_00065 PF00989 PAS fold Ami3637_00065 PF02954 Bacterial regulatory protein, Fis family Ami3637_00065 PF00158 Sigma-54 interaction domain Ami3637_00080 PF01979 Amidohydrolase family Ami3637_00080 PF13382 Adenine deaminase C-terminal domain Ami3637_00085 PF13382 Adenine deaminase C-terminal domain Ami3637_00085 PF01979 Amidohydrolase family Ami3637_00090 PF02082 Transcriptional regulator Ami3637_00110 PF00271 Helicase conserved C-terminal domain Ami3637_00110 PF03880 DbpA RNA binding domain Ami3637_00110 PF00270 DEAD/DEAH box helicase Ami3637_00115 PF01638 HxlR-like helix-turn-helix Ami3637_00145 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) Ami3637_00145 PF07581 The GLUG motif Ami3637_00155 PF03576 Peptidase family S58 Ami3637_00160 PF13520 Amino acid permease Ami3637_00170 PF13426 PAS domain Ami3637_00170 PF02954 Bacterial regulatory protein, Fis family Ami3637_00170 PF00158 Sigma-54 interaction domain Ami3637_00175 PF00155 Aminotransferase class I and II Ami3637_00180 PF01177 Asp/Glu/Hydantoin racemase Ami3637_00185 PF03466 LysR substrate binding domain Ami3637_00185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami3637_00200 PF00324 Amino acid permease Ami3637_00205 PF00171 Aldehyde dehydrogenase family Ami3637_00210 PF13411 MerR HTH family regulatory protein Ami3637_00225 PF08361 MAATS-type transcriptional repressor, C-terminal region Ami3637_00225 PF00440 Bacterial regulatory proteins, tetR family Ami3637_00230 PF00753 Metallo-beta-lactamase superfamily Ami3637_00230 PF16123 Hydroxyacylglutathione hydrolase C-terminus Ami3637_00255 PF04397 LytTr DNA-binding domain Ami3637_00255 PF00072 Response regulator receiver domain Ami3637_00260 PF01965 DJ-1/PfpI family Ami3637_00275 PF03099 Biotin/lipoate A/B protein ligase family Ami3637_00275 PF10437 Bacterial lipoate protein ligase C-terminus Ami3637_00280 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Ami3637_00280 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami3637_00290 PF01047 MarR family Ami3637_00340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami3637_00340 PF03466 LysR substrate binding domain Ami3637_00385 PF05569 BlaR1 peptidase M56 Ami3637_00385 PF00905 Penicillin binding protein transpeptidase domain Ami3637_00390 PF03965 Penicillinase repressor Ami3637_00400 PF05958 tRNA (Uracil-5-)-methyltransferase Ami3637_00405 PF01702 Queuine tRNA-ribosyltransferase Ami3637_00410 PF02547 Queuosine biosynthesis protein Ami3637_00415 PF08486 Stage II sporulation protein Ami3637_00425 PF07499 RuvA, C-terminal domain Ami3637_00425 PF01330 RuvA N terminal domain Ami3637_00430 PF02075 Crossover junction endodeoxyribonuclease RuvC Ami3637_00435 PF02863 Arginine repressor, C-terminal domain Ami3637_00435 PF01316 Arginine repressor, DNA binding domain Ami3637_00440 PF13476 AAA domain Ami3637_00455 PF01202 Shikimate kinase Ami3637_00460 PF00575 S1 RNA binding domain Ami3637_00460 PF02401 LytB protein Ami3637_00465 PF16193 AAA C-terminal domain Ami3637_00465 PF05496 Holliday junction DNA helicase RuvB P-loop domain Ami3637_00465 PF12002 MgsA AAA+ ATPase C terminal Ami3637_00515 PF00437 Type II/IV secretion system protein Ami3637_00520 PF00999 Sodium/hydrogen exchanger family Ami3637_00520 PF02254 TrkA-N domain Ami3637_00525 PF00989 PAS fold Ami3637_00525 PF16736 Single Cache-like Ami3637_00525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_00525 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_00530 PF00486 Transcriptional regulatory protein, C terminal Ami3637_00530 PF00072 Response regulator receiver domain Ami3637_00535 PF02690 Na+/Pi-cotransporter Ami3637_00545 PF00574 Clp protease Ami3637_00555 PF02896 PEP-utilising enzyme, TIM barrel domain Ami3637_00555 PF00391 PEP-utilising enzyme, mobile domain Ami3637_00555 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Ami3637_00565 PF00889 Elongation factor TS Ami3637_00575 PF07650 KH domain Ami3637_00575 PF01926 50S ribosome-binding GTPase Ami3637_00580 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Ami3637_00585 PF02130 Uncharacterized protein family UPF0054 Ami3637_00590 PF02562 PhoH-like protein Ami3637_00595 PF06898 Putative stage IV sporulation protein YqfD Ami3637_00605 PF00291 Pyridoxal-phosphate dependent enzyme Ami3637_00610 PF02082 Transcriptional regulator Ami3637_00620 PF01165 Ribosomal protein S21 Ami3637_00625 PF01230 HIT domain Ami3637_00630 PF04055 Radical SAM superfamily Ami3637_00630 PF01938 TRAM domain Ami3637_00630 PF00919 Uncharacterized protein family UPF0004 Ami3637_00635 PF08000 Bacterial PH domain Ami3637_00640 PF14883 Hypothetical glycosyl hydrolase family 13 Ami3637_00640 PF01522 Polysaccharide deacetylase Ami3637_00645 PF01520 N-acetylmuramoyl-L-alanine amidase Ami3637_00645 PF05036 Sporulation related domain Ami3637_00650 PF01880 Desulfoferrodoxin Ami3637_00650 PF06397 Desulfoferrodoxin, N-terminal domain Ami3637_00655 PF04452 RNA methyltransferase Ami3637_00665 PF13411 MerR HTH family regulatory protein Ami3637_00665 PF06445 GyrI-like small molecule binding domain Ami3637_00675 PF06962 Putative rRNA methylase Ami3637_00680 PF01451 Low molecular weight phosphotyrosine protein phosphatase Ami3637_00700 PF02834 LigT like Phosphoesterase Ami3637_00705 PF02769 AIR synthase related protein, C-terminal domain Ami3637_00705 PF00586 AIR synthase related protein, N-terminal domain Ami3637_00715 PF01455 HupF/HypC family Ami3637_00720 PF07503 HypF finger Ami3637_00720 PF00708 Acylphosphatase Ami3637_00720 PF17788 HypF Kae1-like domain Ami3637_00720 PF01300 Telomere recombination Ami3637_00725 PF00708 Acylphosphatase Ami3637_00730 PF02492 CobW/HypB/UreG, nucleotide-binding domain Ami3637_00745 PF00374 Nickel-dependent hydrogenase Ami3637_00745 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Ami3637_00755 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Ami3637_00760 PF00146 NADH dehydrogenase Ami3637_00765 PF13244 Domain of unknown function (DUF4040) Ami3637_00765 PF00361 Proton-conducting membrane transporter Ami3637_00765 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Ami3637_00770 PF00005 ABC transporter Ami3637_00770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Ami3637_00775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Ami3637_00775 PF00005 ABC transporter Ami3637_00780 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_00780 PF12911 N-terminal TM domain of oligopeptide transport permease C Ami3637_00785 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_00790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Ami3637_00810 PF02583 Metal-sensitive transcriptional repressor Ami3637_00820 PF00072 Response regulator receiver domain Ami3637_00820 PF09308 LuxQ, periplasmic Ami3637_00820 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_00820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_00830 PF00145 C-5 cytosine-specific DNA methylase Ami3637_00845 PF05985 Ethanolamine ammonia-lyase light chain (EutC) Ami3637_00850 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Ami3637_00855 PF07568 Histidine kinase Ami3637_00855 PF13581 Histidine kinase-like ATPase domain Ami3637_00855 PF13426 PAS domain Ami3637_00860 PF00196 Bacterial regulatory proteins, luxR family Ami3637_00860 PF00072 Response regulator receiver domain Ami3637_00870 PF00196 Bacterial regulatory proteins, luxR family Ami3637_00870 PF00072 Response regulator receiver domain Ami3637_00880 PF00936 BMC domain Ami3637_00885 PF06130 Phosphate propanoyltransferase Ami3637_00890 PF00171 Aldehyde dehydrogenase family Ami3637_00890 PF00465 Iron-containing alcohol dehydrogenase Ami3637_00895 PF00936 BMC domain Ami3637_00910 PF10531 SLBB domain Ami3637_00910 PF13375 RnfC Barrel sandwich hybrid domain Ami3637_00910 PF13237 4Fe-4S dicluster domain Ami3637_00910 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Ami3637_00925 PF03319 Ethanolamine utilisation protein EutN/carboxysome Ami3637_00930 PF01923 Cobalamin adenosyltransferase Ami3637_00935 PF00936 BMC domain Ami3637_00945 PF10662 Ethanolamine utilisation - propanediol utilisation Ami3637_00950 PF00936 BMC domain Ami3637_00955 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Ami3637_00955 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ami3637_00965 PF02152 Dihydroneopterin aldolase Ami3637_00965 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Ami3637_00970 PF00809 Pterin binding enzyme Ami3637_00975 PF01966 HD domain Ami3637_00980 PF01227 GTP cyclohydrolase I Ami3637_00990 PF00012 Hsp70 protein Ami3637_01000 PF01628 HrcA protein C terminal domain Ami3637_01005 PF00005 ABC transporter Ami3637_01010 PF00005 ABC transporter Ami3637_01010 PF12399 Branched-chain amino acid ATP-binding cassette transporter Ami3637_01015 PF02653 Branched-chain amino acid transport system / permease component Ami3637_01015 PF11862 Domain of unknown function (DUF3382) Ami3637_01020 PF02653 Branched-chain amino acid transport system / permease component Ami3637_01040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Ami3637_01040 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Ami3637_01045 PF01235 Sodium:alanine symporter family Ami3637_01080 PF06969 HemN C-terminal domain Ami3637_01080 PF04055 Radical SAM superfamily Ami3637_01100 PF00009 Elongation factor Tu GTP binding domain Ami3637_01100 PF00679 Elongation factor G C-terminus Ami3637_01100 PF03144 Elongation factor Tu domain 2 Ami3637_01100 PF06421 GTP-binding protein LepA C-terminus Ami3637_01115 PF03418 Germination protease Ami3637_01120 PF01649 Ribosomal protein S20 Ami3637_01125 PF12833 Helix-turn-helix domain Ami3637_01125 PF02311 AraC-like ligand binding domain Ami3637_01130 PF00696 Amino acid kinase family Ami3637_01135 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Ami3637_01135 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Ami3637_01145 PF17853 GGDEF-like domain Ami3637_01145 PF13556 PucR C-terminal helix-turn-helix domain Ami3637_01145 PF05651 Putative sugar diacid recognition Ami3637_01150 PF13520 Amino acid permease Ami3637_01155 PF00742 Homoserine dehydrogenase Ami3637_01155 PF01842 ACT domain Ami3637_01155 PF03447 Homoserine dehydrogenase, NAD binding domain Ami3637_01165 PF00892 EamA-like transporter family Ami3637_01170 PF03553 Na+/H+ antiporter family Ami3637_01185 PF08439 Oligopeptidase F Ami3637_01185 PF01432 Peptidase family M3 Ami3637_01190 PF01513 ATP-NAD kinase Ami3637_01195 PF01479 S4 domain Ami3637_01195 PF00849 RNA pseudouridylate synthase Ami3637_01200 PF02743 Cache domain Ami3637_01200 PF00672 HAMP domain Ami3637_01200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_01215 PF13735 tRNA nucleotidyltransferase domain 2 putative Ami3637_01215 PF01743 Poly A polymerase head domain Ami3637_01215 PF12627 Probable RNA and SrmB- binding site of polymerase A Ami3637_01225 PF16124 RecQ zinc-binding Ami3637_01225 PF00570 HRDC domain Ami3637_01225 PF00271 Helicase conserved C-terminal domain Ami3637_01225 PF00270 DEAD/DEAH box helicase Ami3637_01225 PF09382 RQC domain Ami3637_01245 PF00704 Glycosyl hydrolases family 18 Ami3637_01265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami3637_01265 PF03466 LysR substrate binding domain Ami3637_01280 PF03551 Transcriptional regulator PadR-like family Ami3637_01290 PF04892 VanZ like family Ami3637_01305 PF03853 YjeF-related protein N-terminus Ami3637_01325 PF00881 Nitroreductase family Ami3637_01330 PF01638 HxlR-like helix-turn-helix Ami3637_01335 PF00395 S-layer homology domain Ami3637_01355 PF02698 DUF218 domain Ami3637_01365 PF12627 Probable RNA and SrmB- binding site of polymerase A Ami3637_01365 PF01743 Poly A polymerase head domain Ami3637_01365 PF01966 HD domain Ami3637_01375 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Ami3637_01375 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Ami3637_01380 PF01555 DNA methylase Ami3637_01385 PF18273 Type III R-M EcoP15I C-terminal domain Ami3637_01385 PF01555 DNA methylase Ami3637_01390 PF08497 Radical SAM N-terminal Ami3637_01390 PF04055 Radical SAM superfamily Ami3637_01390 PF11842 Domain of unknown function (DUF3362) Ami3637_01415 PF00188 Cysteine-rich secretory protein family Ami3637_01420 PF00293 NUDIX domain Ami3637_01425 PF00892 EamA-like transporter family Ami3637_01435 PF04055 Radical SAM superfamily Ami3637_01440 PF00133 tRNA synthetases class I (I, L, M and V) Ami3637_01440 PF08264 Anticodon-binding domain of tRNA Ami3637_01450 PF02631 RecX family Ami3637_01465 PF01371 Trp repressor protein Ami3637_01470 PF01636 Phosphotransferase enzyme family Ami3637_01490 PF00171 Aldehyde dehydrogenase family Ami3637_01495 PF01923 Cobalamin adenosyltransferase Ami3637_01500 PF03319 Ethanolamine utilisation protein EutN/carboxysome Ami3637_01510 PF06130 Phosphate propanoyltransferase Ami3637_01515 PF00936 BMC domain Ami3637_01520 PF00936 BMC domain Ami3637_01525 PF02288 Dehydratase medium subunit Ami3637_01530 PF08841 Diol dehydratase reactivase ATPase-like domain Ami3637_01530 PF18427 DD-reactivating factor swiveling domain Ami3637_01535 PF02287 Dehydratase small subunit Ami3637_01540 PF02288 Dehydratase medium subunit Ami3637_01545 PF02286 Dehydratase large subunit Ami3637_01550 PF00936 BMC domain Ami3637_01555 PF12833 Helix-turn-helix domain Ami3637_01565 PF00595 PDZ domain Ami3637_01565 PF03572 Peptidase family S41 Ami3637_01570 PF10141 Single-strand DNA-specific exonuclease, C terminal domain Ami3637_01570 PF01368 DHH family Ami3637_01570 PF02272 DHHA1 domain Ami3637_01570 PF17768 RecJ OB domain Ami3637_01575 PF01476 LysM domain Ami3637_01575 PF08525 Opacity-associated protein A N-terminal motif Ami3637_01575 PF01551 Peptidase family M23 Ami3637_01580 PF02687 FtsX-like permease family Ami3637_01580 PF18075 FtsX extracellular domain Ami3637_01585 PF00005 ABC transporter Ami3637_01605 PF02779 Transketolase, pyrimidine binding domain Ami3637_01605 PF02780 Transketolase, C-terminal domain Ami3637_01610 PF00456 Transketolase, thiamine diphosphate binding domain Ami3637_01615 PF03808 Glycosyl transferase WecB/TagA/CpsF family Ami3637_01635 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Ami3637_01640 PF03853 YjeF-related protein N-terminus Ami3637_01640 PF01256 Carbohydrate kinase Ami3637_01645 PF01769 Divalent cation transporter Ami3637_01645 PF00571 CBS domain Ami3637_01645 PF03448 MgtE intracellular N domain Ami3637_01660 PF01467 Cytidylyltransferase-like Ami3637_01665 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain Ami3637_01665 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase Ami3637_01670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Ami3637_01670 PF00682 HMGL-like Ami3637_01670 PF00289 Biotin carboxylase, N-terminal domain Ami3637_01670 PF02785 Biotin carboxylase C-terminal domain Ami3637_01670 PF00364 Biotin-requiring enzyme Ami3637_01670 PF02436 Conserved carboxylase domain Ami3637_01675 PF00924 Mechanosensitive ion channel Ami3637_01675 PF05552 Conserved TM helix Ami3637_01685 PF03747 ADP-ribosylglycohydrolase Ami3637_01690 PF00294 pfkB family carbohydrate kinase Ami3637_01695 PF00294 pfkB family carbohydrate kinase Ami3637_01700 PF08402 TOBE domain Ami3637_01700 PF00005 ABC transporter Ami3637_01705 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_01710 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_01715 PF00072 Response regulator receiver domain Ami3637_01715 PF13188 PAS domain Ami3637_01715 PF08448 PAS fold Ami3637_01715 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_01715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_01720 PF02954 Bacterial regulatory protein, Fis family Ami3637_01720 PF00072 Response regulator receiver domain Ami3637_01720 PF00158 Sigma-54 interaction domain Ami3637_01725 PF13520 Amino acid permease Ami3637_01730 PF13416 Bacterial extracellular solute-binding protein Ami3637_01735 PF01255 Putative undecaprenyl diphosphate synthase Ami3637_01775 PF13439 Glycosyltransferase Family 4 Ami3637_01775 PF00534 Glycosyl transferases group 1 Ami3637_01780 PF00534 Glycosyl transferases group 1 Ami3637_01780 PF13439 Glycosyltransferase Family 4 Ami3637_01820 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Ami3637_01820 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ami3637_01820 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Ami3637_01825 PF03808 Glycosyl transferase WecB/TagA/CpsF family Ami3637_01830 PF02397 Bacterial sugar transferase Ami3637_01855 PF00963 Cohesin domain Ami3637_01855 PF00395 S-layer homology domain Ami3637_01870 PF10997 Alternate to MurJ Ami3637_01900 PF04055 Radical SAM superfamily Ami3637_01900 PF06969 HemN C-terminal domain Ami3637_01910 PF05167 Uncharacterised ACR (DUF711) Ami3637_01930 PF05853 beta-keto acid cleavage enzyme Ami3637_01935 PF03668 P-loop ATPase protein family Ami3637_01945 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Ami3637_01945 PF01565 FAD binding domain Ami3637_01960 PF02308 MgtC family Ami3637_01975 PF00072 Response regulator receiver domain Ami3637_01980 PF00072 Response regulator receiver domain Ami3637_01985 PF00672 HAMP domain Ami3637_01985 PF00072 Response regulator receiver domain Ami3637_01985 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_01985 PF01627 Hpt domain Ami3637_01985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_01985 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Ami3637_01990 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Ami3637_01990 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Ami3637_02065 PF00437 Type II/IV secretion system protein Ami3637_02070 PF13614 AAA domain Ami3637_02140 PF00753 Metallo-beta-lactamase superfamily Ami3637_02140 PF00258 Flavodoxin Ami3637_02145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Ami3637_02145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Ami3637_02145 PF02770 Acyl-CoA dehydrogenase, middle domain Ami3637_02185 PF04239 Protein of unknown function (DUF421) Ami3637_02195 PF12822 ECF transporter, substrate-specific component Ami3637_02200 PF01479 S4 domain Ami3637_02205 PF00216 Bacterial DNA-binding protein Ami3637_02210 PF03819 MazG nucleotide pyrophosphohydrolase domain Ami3637_02215 PF14667 Polysaccharide biosynthesis C-terminal domain Ami3637_02215 PF01943 Polysaccharide biosynthesis protein Ami3637_02220 PF01979 Amidohydrolase family Ami3637_02225 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Ami3637_02225 PF15714 Stage V sporulation protein T C-terminal, transcription factor Ami3637_02230 PF00271 Helicase conserved C-terminal domain Ami3637_02230 PF17757 UvrB interaction domain Ami3637_02230 PF03461 TRCF domain Ami3637_02230 PF00270 DEAD/DEAH box helicase Ami3637_02230 PF02559 CarD-like/TRCF domain Ami3637_02235 PF01195 Peptidyl-tRNA hydrolase Ami3637_02240 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Ami3637_02240 PF14572 Phosphoribosyl synthetase-associated domain Ami3637_02245 PF00132 Bacterial transferase hexapeptide (six repeats) Ami3637_02245 PF12804 MobA-like NTP transferase domain Ami3637_02250 PF01225 Mur ligase family, catalytic domain Ami3637_02250 PF08245 Mur ligase middle domain Ami3637_02250 PF02875 Mur ligase family, glutamate ligase domain Ami3637_02255 PF09182 Bacterial purine repressor, N-terminal Ami3637_02255 PF00156 Phosphoribosyl transferase domain Ami3637_02260 PF04026 SpoVG Ami3637_02265 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami3637_02270 PF00085 Thioredoxin Ami3637_02280 PF01464 Transglycosylase SLT domain Ami3637_02290 PF01098 Cell cycle protein Ami3637_02295 PF00905 Penicillin binding protein transpeptidase domain Ami3637_02305 PF00144 Beta-lactamase Ami3637_02310 PF00156 Phosphoribosyl transferase domain Ami3637_02320 PF04542 Sigma-70 region 2 Ami3637_02320 PF08281 Sigma-70, region 4 Ami3637_02330 PF00578 AhpC/TSA family Ami3637_02330 PF10417 C-terminal domain of 1-Cys peroxiredoxin Ami3637_02350 PF01180 Dihydroorotate dehydrogenase Ami3637_02355 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Ami3637_02360 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Ami3637_02380 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ami3637_02380 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Ami3637_02385 PF00128 Alpha amylase, catalytic domain Ami3637_02385 PF02903 Alpha amylase, N-terminal ig-like domain Ami3637_02385 PF00395 S-layer homology domain Ami3637_02415 PF00395 S-layer homology domain Ami3637_02415 PF00331 Glycosyl hydrolase family 10 Ami3637_02415 PF02018 Carbohydrate binding domain Ami3637_02415 PF06452 Carbohydrate family 9 binding domain-like Ami3637_02450 PF01546 Peptidase family M20/M25/M40 Ami3637_02470 PF00580 UvrD/REP helicase N-terminal domain Ami3637_02470 PF12705 PD-(D/E)XK nuclease superfamily Ami3637_02470 PF13361 UvrD-like helicase C-terminal domain Ami3637_02475 PF13361 UvrD-like helicase C-terminal domain Ami3637_02475 PF00580 UvrD/REP helicase N-terminal domain Ami3637_02475 PF12705 PD-(D/E)XK nuclease superfamily Ami3637_02485 PF00395 S-layer homology domain Ami3637_02535 PF01546 Peptidase family M20/M25/M40 Ami3637_02535 PF07687 Peptidase dimerisation domain Ami3637_02565 PF10518 TAT (twin-arginine translocation) pathway signal sequence Ami3637_02565 PF00149 Calcineurin-like phosphoesterase Ami3637_02585 PF11799 impB/mucB/samB family C-terminal domain Ami3637_02585 PF00817 impB/mucB/samB family Ami3637_02590 PF00270 DEAD/DEAH box helicase Ami3637_02590 PF00271 Helicase conserved C-terminal domain Ami3637_02595 PF00563 EAL domain Ami3637_02595 PF03707 Bacterial signalling protein N terminal repeat Ami3637_02595 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_02605 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Ami3637_02605 PF12557 Cob(I)alamin adenosyltransferase N terminal Ami3637_02610 PF01475 Ferric uptake regulator family Ami3637_02615 PF00950 ABC 3 transport family Ami3637_02625 PF01297 Zinc-uptake complex component A periplasmic Ami3637_02655 PF02163 Peptidase family M50 Ami3637_02660 PF00877 NlpC/P60 family Ami3637_02660 PF01476 LysM domain Ami3637_02665 PF13396 Phospholipase_D-nuclease N-terminal Ami3637_02665 PF13091 PLD-like domain Ami3637_02695 PF01584 CheW-like domain Ami3637_02710 PF00491 Arginase family Ami3637_02715 PF01022 Bacterial regulatory protein, arsR family Ami3637_02720 PF03773 Predicted permease Ami3637_02740 PF00491 Arginase family Ami3637_02745 PF00999 Sodium/hydrogen exchanger family Ami3637_02755 PF01979 Amidohydrolase family Ami3637_02760 PF18030 RimK PreATP-grasp domain Ami3637_02760 PF08443 RimK-like ATP-grasp domain Ami3637_02795 PF00871 Acetokinase family Ami3637_02800 PF01515 Phosphate acetyl/butaryl transferase Ami3637_02815 PF04055 Radical SAM superfamily Ami3637_02815 PF01938 TRAM domain Ami3637_02815 PF00919 Uncharacterized protein family UPF0004 Ami3637_02850 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) Ami3637_02855 PF04865 Baseplate J-like protein Ami3637_02980 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Ami3637_02980 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Ami3637_02985 PF02660 Glycerol-3-phosphate acyltransferase Ami3637_02990 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Ami3637_02990 PF01926 50S ribosome-binding GTPase Ami3637_02995 PF02881 SRP54-type protein, helical bundle domain Ami3637_02995 PF00448 SRP54-type protein, GTPase domain Ami3637_03000 PF06470 SMC proteins Flexible Hinge Domain Ami3637_03000 PF02463 RecF/RecN/SMC N terminal domain Ami3637_03005 PF00035 Double-stranded RNA binding motif Ami3637_03005 PF14622 Ribonuclease-III-like Ami3637_03040 PF07969 Amidohydrolase family Ami3637_03045 PF01546 Peptidase family M20/M25/M40 Ami3637_03045 PF07687 Peptidase dimerisation domain Ami3637_03050 PF00324 Amino acid permease Ami3637_03060 PF00155 Aminotransferase class I and II Ami3637_03065 PF01678 Diaminopimelate epimerase Ami3637_03070 PF07943 Penicillin-binding protein 5, C-terminal domain Ami3637_03070 PF00768 D-alanyl-D-alanine carboxypeptidase Ami3637_03075 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Ami3637_03075 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ami3637_03085 PF00842 Alanine racemase, C-terminal domain Ami3637_03085 PF01168 Alanine racemase, N-terminal domain Ami3637_03090 PF07687 Peptidase dimerisation domain Ami3637_03090 PF01546 Peptidase family M20/M25/M40 Ami3637_03110 PF07670 Nucleoside recognition Ami3637_03115 PF07670 Nucleoside recognition Ami3637_03120 PF02016 LD-carboxypeptidase N-terminal domain Ami3637_03120 PF17676 LD-carboxypeptidase C-terminal domain Ami3637_03125 PF00158 Sigma-54 interaction domain Ami3637_03125 PF01590 GAF domain Ami3637_03125 PF02954 Bacterial regulatory protein, Fis family Ami3637_03135 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_03140 PF00497 Bacterial extracellular solute-binding proteins, family 3 Ami3637_03150 PF11738 Protein of unknown function (DUF3298) Ami3637_03150 PF13739 Deacetylase PdaC Ami3637_03150 PF01522 Polysaccharide deacetylase Ami3637_03165 PF00781 Diacylglycerol kinase catalytic domain Ami3637_03175 PF02875 Mur ligase family, glutamate ligase domain Ami3637_03175 PF08245 Mur ligase middle domain Ami3637_03180 PF08264 Anticodon-binding domain of tRNA Ami3637_03180 PF10458 Valyl tRNA synthetase tRNA binding arm Ami3637_03180 PF00133 tRNA synthetases class I (I, L, M and V) Ami3637_03190 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_03195 PF02602 Uroporphyrinogen-III synthase HemD Ami3637_03195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Ami3637_03200 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Ami3637_03200 PF03900 Porphobilinogen deaminase, C-terminal domain Ami3637_03205 PF10414 Sirohaem synthase dimerisation region Ami3637_03205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Ami3637_03210 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Ami3637_03210 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Ami3637_03210 PF01488 Shikimate / quinate 5-dehydrogenase Ami3637_03215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Ami3637_03220 PF06180 Cobalt chelatase (CbiK) Ami3637_03230 PF00202 Aminotransferase class-III Ami3637_03235 PF00490 Delta-aminolevulinic acid dehydratase Ami3637_03240 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Ami3637_03240 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Ami3637_03245 PF04961 Formiminotransferase-cyclodeaminase Ami3637_03250 PF01268 Formate--tetrahydrofolate ligase Ami3637_03255 PF01351 Ribonuclease HII Ami3637_03260 PF01926 50S ribosome-binding GTPase Ami3637_03265 PF01245 Ribosomal protein L19 Ami3637_03270 PF00589 Phage integrase family Ami3637_03270 PF02899 Phage integrase, N-terminal SAM-like domain Ami3637_03280 PF00293 NUDIX domain Ami3637_03285 PF14748 Pyrroline-5-carboxylate reductase dimerisation Ami3637_03285 PF03807 NADP oxidoreductase coenzyme F420-dependent Ami3637_03290 PF00696 Amino acid kinase family Ami3637_03295 PF00440 Bacterial regulatory proteins, tetR family Ami3637_03295 PF17932 Tetracyclin repressor-like, C-terminal domain Ami3637_03305 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA Ami3637_03315 PF02492 CobW/HypB/UreG, nucleotide-binding domain Ami3637_03320 PF00005 ABC transporter Ami3637_03320 PF12848 ABC transporter Ami3637_03330 PF04232 Stage V sporulation protein S (SpoVS) Ami3637_03345 PF00171 Aldehyde dehydrogenase family Ami3637_03380 PF00936 BMC domain Ami3637_03385 PF06130 Phosphate propanoyltransferase Ami3637_03390 PF00171 Aldehyde dehydrogenase family Ami3637_03390 PF00465 Iron-containing alcohol dehydrogenase Ami3637_03395 PF00936 BMC domain Ami3637_03410 PF10531 SLBB domain Ami3637_03410 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Ami3637_03410 PF13237 4Fe-4S dicluster domain Ami3637_03410 PF13375 RnfC Barrel sandwich hybrid domain Ami3637_03430 PF10662 Ethanolamine utilisation - propanediol utilisation Ami3637_03435 PF00936 BMC domain Ami3637_03440 PF13187 4Fe-4S dicluster domain Ami3637_03440 PF04055 Radical SAM superfamily Ami3637_03445 PF01228 Glycine radical Ami3637_03445 PF02901 Pyruvate formate lyase-like Ami3637_03450 PF00465 Iron-containing alcohol dehydrogenase Ami3637_03450 PF00171 Aldehyde dehydrogenase family Ami3637_03455 PF00936 BMC domain Ami3637_03460 PF00936 BMC domain Ami3637_03475 PF00150 Cellulase (glycosyl hydrolase family 5) Ami3637_03475 PF03424 Carbohydrate binding domain (family 17/28) Ami3637_03475 PF00395 S-layer homology domain Ami3637_03480 PF06445 GyrI-like small molecule binding domain Ami3637_03480 PF13411 MerR HTH family regulatory protein Ami3637_03495 PF12833 Helix-turn-helix domain Ami3637_03495 PF06445 GyrI-like small molecule binding domain Ami3637_03500 PF00109 Beta-ketoacyl synthase, N-terminal domain Ami3637_03500 PF02801 Beta-ketoacyl synthase, C-terminal domain Ami3637_03505 PF08331 Domain of unknown function (DUF1730) Ami3637_03520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Ami3637_03535 PF03466 LysR substrate binding domain Ami3637_03535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami3637_03540 PF00664 ABC transporter transmembrane region Ami3637_03540 PF00005 ABC transporter Ami3637_03545 PF00664 ABC transporter transmembrane region Ami3637_03545 PF00005 ABC transporter Ami3637_03560 PF00155 Aminotransferase class I and II Ami3637_03570 PF00704 Glycosyl hydrolases family 18 Ami3637_03610 PF01026 TatD related DNase Ami3637_03615 PF00005 ABC transporter Ami3637_03625 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_03630 PF02515 CoA-transferase family III Ami3637_03635 PF00484 Carbonic anhydrase Ami3637_03640 PF13416 Bacterial extracellular solute-binding protein Ami3637_03645 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_03650 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_03655 PF00005 ABC transporter Ami3637_03655 PF08402 TOBE domain Ami3637_03690 PF08281 Sigma-70, region 4 Ami3637_03690 PF04542 Sigma-70 region 2 Ami3637_03700 PF00892 EamA-like transporter family Ami3637_03720 PF03063 Prismane/CO dehydrogenase family Ami3637_03765 PF02548 Ketopantoate hydroxymethyltransferase Ami3637_03775 PF01544 CorA-like Mg2+ transporter protein Ami3637_03790 PF04397 LytTr DNA-binding domain Ami3637_03790 PF00072 Response regulator receiver domain Ami3637_03795 PF06580 Histidine kinase Ami3637_03795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_03805 PF01966 HD domain Ami3637_03810 PF00395 S-layer homology domain Ami3637_03810 PF00150 Cellulase (glycosyl hydrolase family 5) Ami3637_03810 PF03424 Carbohydrate binding domain (family 17/28) Ami3637_03815 PF03424 Carbohydrate binding domain (family 17/28) Ami3637_03815 PF00150 Cellulase (glycosyl hydrolase family 5) Ami3637_03815 PF00395 S-layer homology domain Ami3637_03835 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_03840 PF00005 ABC transporter Ami3637_03850 PF00465 Iron-containing alcohol dehydrogenase Ami3637_03870 PF01381 Helix-turn-helix Ami3637_03885 PF00672 HAMP domain Ami3637_03885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_03885 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_03890 PF00072 Response regulator receiver domain Ami3637_03890 PF00486 Transcriptional regulatory protein, C terminal Ami3637_03910 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_03910 PF08448 PAS fold Ami3637_03915 PF00011 Hsp20/alpha crystallin family Ami3637_03920 PF01738 Dienelactone hydrolase family Ami3637_03930 PF00440 Bacterial regulatory proteins, tetR family Ami3637_03940 PF04542 Sigma-70 region 2 Ami3637_03940 PF08281 Sigma-70, region 4 Ami3637_03945 PF13490 Putative zinc-finger Ami3637_03950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_03950 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_03950 PF18698 Histidine kinase sensor domain Ami3637_03950 PF00672 HAMP domain Ami3637_03955 PF00486 Transcriptional regulatory protein, C terminal Ami3637_03955 PF00072 Response regulator receiver domain Ami3637_03970 PF00403 Heavy-metal-associated domain Ami3637_03975 PF00403 Heavy-metal-associated domain Ami3637_03995 PF01066 CDP-alcohol phosphatidyltransferase Ami3637_04000 PF00324 Amino acid permease Ami3637_04010 PF00324 Amino acid permease Ami3637_04020 PF00005 ABC transporter Ami3637_04025 PF13411 MerR HTH family regulatory protein Ami3637_04030 PF00041 Fibronectin type III domain Ami3637_04030 PF00704 Glycosyl hydrolases family 18 Ami3637_04035 PF00704 Glycosyl hydrolases family 18 Ami3637_04035 PF00041 Fibronectin type III domain Ami3637_04045 PF00672 HAMP domain Ami3637_04045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_04045 PF02743 Cache domain Ami3637_04060 PF04542 Sigma-70 region 2 Ami3637_04060 PF08281 Sigma-70, region 4 Ami3637_04080 PF00334 Nucleoside diphosphate kinase Ami3637_04085 PF00731 AIR carboxylase Ami3637_04095 PF01699 Sodium/calcium exchanger protein Ami3637_04105 PF13411 MerR HTH family regulatory protein Ami3637_04125 PF13520 Amino acid permease Ami3637_04130 PF00324 Amino acid permease Ami3637_04135 PF03764 Elongation factor G, domain IV Ami3637_04135 PF00009 Elongation factor Tu GTP binding domain Ami3637_04135 PF14492 Elongation Factor G, domain II Ami3637_04135 PF00679 Elongation factor G C-terminus Ami3637_04145 PF00664 ABC transporter transmembrane region Ami3637_04145 PF00005 ABC transporter Ami3637_04150 PF00691 OmpA family Ami3637_04150 PF13677 Membrane MotB of proton-channel complex MotA/MotB Ami3637_04155 PF01618 MotA/TolQ/ExbB proton channel family Ami3637_04160 PF00291 Pyridoxal-phosphate dependent enzyme Ami3637_04175 PF07739 TipAS antibiotic-recognition domain Ami3637_04175 PF13411 MerR HTH family regulatory protein Ami3637_04185 PF07702 UTRA domain Ami3637_04185 PF00392 Bacterial regulatory proteins, gntR family Ami3637_04195 PF01638 HxlR-like helix-turn-helix Ami3637_04225 PF07690 Major Facilitator Superfamily Ami3637_04230 PF01047 MarR family Ami3637_04280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_04280 PF00672 HAMP domain Ami3637_04280 PF02743 Cache domain Ami3637_04285 PF01966 HD domain Ami3637_04290 PF16326 ABC transporter C-terminal domain Ami3637_04290 PF00005 ABC transporter Ami3637_04290 PF12848 ABC transporter Ami3637_04300 PF03358 NADPH-dependent FMN reductase Ami3637_04315 PF00005 ABC transporter Ami3637_04325 PF08281 Sigma-70, region 4 Ami3637_04325 PF04542 Sigma-70 region 2 Ami3637_04340 PF00797 N-acetyltransferase Ami3637_04345 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_04350 PF00072 Response regulator receiver domain Ami3637_04350 PF00486 Transcriptional regulatory protein, C terminal Ami3637_04355 PF00535 Glycosyl transferase family 2 Ami3637_04360 PF00072 Response regulator receiver domain Ami3637_04360 PF00486 Transcriptional regulatory protein, C terminal Ami3637_04365 PF00672 HAMP domain Ami3637_04365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_04365 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_04370 PF02687 FtsX-like permease family Ami3637_04370 PF12704 MacB-like periplasmic core domain Ami3637_04370 PF00005 ABC transporter Ami3637_04380 PF00155 Aminotransferase class I and II Ami3637_04380 PF00392 Bacterial regulatory proteins, gntR family Ami3637_04415 PF02903 Alpha amylase, N-terminal ig-like domain Ami3637_04415 PF00128 Alpha amylase, catalytic domain Ami3637_04415 PF00395 S-layer homology domain Ami3637_04430 PF05958 tRNA (Uracil-5-)-methyltransferase Ami3637_04430 PF01938 TRAM domain Ami3637_04435 PF03061 Thioesterase superfamily Ami3637_04445 PF13472 GDSL-like Lipase/Acylhydrolase family Ami3637_04455 PF13443 Cro/C1-type HTH DNA-binding domain Ami3637_04500 PF00465 Iron-containing alcohol dehydrogenase Ami3637_04505 PF03372 Endonuclease/Exonuclease/phosphatase family Ami3637_04535 PF13185 GAF domain Ami3637_04535 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_04550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami3637_04550 PF03466 LysR substrate binding domain Ami3637_04555 PF00892 EamA-like transporter family Ami3637_04575 PF08331 Domain of unknown function (DUF1730) Ami3637_04605 PF05067 Manganese containing catalase Ami3637_04610 PF12652 CotJB protein Ami3637_04695 PF01053 Cys/Met metabolism PLP-dependent enzyme Ami3637_04705 PF06874 Firmicute fructose-1,6-bisphosphatase Ami3637_04710 PF01751 Toprim domain Ami3637_04710 PF01131 DNA topoisomerase Ami3637_04715 PF00364 Biotin-requiring enzyme Ami3637_04715 PF00682 HMGL-like Ami3637_04715 PF02436 Conserved carboxylase domain Ami3637_04720 PF00704 Glycosyl hydrolases family 18 Ami3637_04720 PF01476 LysM domain Ami3637_04725 PF00963 Cohesin domain Ami3637_04725 PF00395 S-layer homology domain Ami3637_04735 PF01790 Prolipoprotein diacylglyceryl transferase Ami3637_04740 PF09997 Predicted membrane protein (DUF2238) Ami3637_04765 PF01546 Peptidase family M20/M25/M40 Ami3637_04785 PF17853 GGDEF-like domain Ami3637_04785 PF13556 PucR C-terminal helix-turn-helix domain Ami3637_04785 PF07905 Purine catabolism regulatory protein-like family Ami3637_04790 PF01545 Cation efflux family Ami3637_04790 PF16916 Dimerisation domain of Zinc Transporter Ami3637_04795 PF00963 Cohesin domain Ami3637_04795 PF00395 S-layer homology domain Ami3637_04800 PF04389 Peptidase family M28 Ami3637_04800 PF02225 PA domain Ami3637_04810 PF00753 Metallo-beta-lactamase superfamily Ami3637_04810 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Ami3637_04810 PF17770 Ribonuclease J C-terminal domain Ami3637_04815 PF14883 Hypothetical glycosyl hydrolase family 13 Ami3637_04815 PF01522 Polysaccharide deacetylase Ami3637_04820 PF00072 Response regulator receiver domain Ami3637_04820 PF00486 Transcriptional regulatory protein, C terminal Ami3637_04825 PF00672 HAMP domain Ami3637_04825 PF18698 Histidine kinase sensor domain Ami3637_04825 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_04825 PF00989 PAS fold Ami3637_04825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_04835 PF00005 ABC transporter Ami3637_04845 PF01969 Protein of unknown function DUF111 Ami3637_04860 PF05198 Translation initiation factor IF-3, N-terminal domain Ami3637_04860 PF00707 Translation initiation factor IF-3, C-terminal domain Ami3637_04870 PF13520 Amino acid permease Ami3637_04885 PF03591 AzlC protein Ami3637_04895 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_04895 PF01590 GAF domain Ami3637_04895 PF00360 Phytochrome region Ami3637_04895 PF00563 EAL domain Ami3637_04900 PF01144 Coenzyme A transferase Ami3637_04905 PF01144 Coenzyme A transferase Ami3637_04915 PF10609 NUBPL iron-transfer P-loop NTPase Ami3637_04920 PF01966 HD domain Ami3637_04920 PF00072 Response regulator receiver domain Ami3637_04930 PF00258 Flavodoxin Ami3637_04945 PF17910 FeoB cytosolic helical domain Ami3637_04945 PF02421 Ferrous iron transport protein B Ami3637_04945 PF07664 Ferrous iron transport protein B C terminus Ami3637_04945 PF07670 Nucleoside recognition Ami3637_04960 PF00563 EAL domain Ami3637_04960 PF08668 HDOD domain Ami3637_04975 PF08486 Stage II sporulation protein Ami3637_04980 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Ami3637_04985 PF00437 Type II/IV secretion system protein Ami3637_05025 PF04203 Sortase domain Ami3637_05040 PF06130 Phosphate propanoyltransferase Ami3637_05055 PF01926 50S ribosome-binding GTPase Ami3637_05060 PF02190 ATP-dependent protease La (LON) substrate-binding domain Ami3637_05060 PF00004 ATPase family associated with various cellular activities (AAA) Ami3637_05060 PF05362 Lon protease (S16) C-terminal proteolytic domain Ami3637_05065 PF07724 AAA domain (Cdc48 subfamily) Ami3637_05065 PF10431 C-terminal, D2-small domain, of ClpB protein Ami3637_05065 PF06689 ClpX C4-type zinc finger Ami3637_05075 PF05697 Bacterial trigger factor protein (TF) Ami3637_05075 PF05698 Bacterial trigger factor protein (TF) C-terminus Ami3637_05075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Ami3637_05080 PF01928 CYTH domain Ami3637_05110 PF04397 LytTr DNA-binding domain Ami3637_05110 PF00072 Response regulator receiver domain Ami3637_05120 PF13860 FlgD Ig-like domain Ami3637_05120 PF00082 Subtilase family Ami3637_05120 PF02225 PA domain Ami3637_05120 PF05922 Peptidase inhibitor I9 Ami3637_05145 PF01113 Dihydrodipicolinate reductase, N-terminus Ami3637_05145 PF05173 Dihydrodipicolinate reductase, C-terminus Ami3637_05155 PF00226 DnaJ domain Ami3637_05155 PF01556 DnaJ C terminal domain Ami3637_05155 PF00684 DnaJ central domain Ami3637_05165 PF07687 Peptidase dimerisation domain Ami3637_05165 PF01546 Peptidase family M20/M25/M40 Ami3637_05170 PF08279 HTH domain Ami3637_05170 PF02829 3H domain Ami3637_05175 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Ami3637_05175 PF00753 Metallo-beta-lactamase superfamily Ami3637_05175 PF10996 Beta-Casp domain Ami3637_05180 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami3637_05180 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Ami3637_05185 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Ami3637_05185 PF00175 Oxidoreductase NAD-binding domain Ami3637_05195 PF04060 Putative Fe-S cluster Ami3637_05195 PF13187 4Fe-4S dicluster domain Ami3637_05195 PF00037 4Fe-4S binding domain Ami3637_05205 PF02378 Phosphotransferase system, EIIC Ami3637_05215 PF03606 C4-dicarboxylate anaerobic carrier Ami3637_05220 PF07969 Amidohydrolase family Ami3637_05240 PF01553 Acyltransferase Ami3637_05255 PF02390 Putative methyltransferase Ami3637_05265 PF02361 Cobalt transport protein Ami3637_05280 PF01196 Ribosomal protein L17 Ami3637_05290 PF01000 RNA polymerase Rpb3/RpoA insert domain Ami3637_05290 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Ami3637_05290 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Ami3637_05295 PF00163 Ribosomal protein S4/S9 N-terminal domain Ami3637_05295 PF01479 S4 domain Ami3637_05300 PF00411 Ribosomal protein S11 Ami3637_05305 PF00416 Ribosomal protein S13/S18 Ami3637_05310 PF00444 Ribosomal protein L36 Ami3637_05315 PF01176 Translation initiation factor 1A / IF-1 Ami3637_05320 PF00557 Metallopeptidase family M24 Ami3637_05325 PF05191 Adenylate kinase, active site lid Ami3637_05330 PF00344 SecY translocase Ami3637_05335 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Ami3637_05340 PF00327 Ribosomal protein L30p/L7e Ami3637_05345 PF00333 Ribosomal protein S5, N-terminal domain Ami3637_05345 PF03719 Ribosomal protein S5, C-terminal domain Ami3637_05350 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Ami3637_05355 PF00347 Ribosomal protein L6 Ami3637_05360 PF00410 Ribosomal protein S8 Ami3637_05365 PF00253 Ribosomal protein S14p/S29e Ami3637_05370 PF00673 ribosomal L5P family C-terminus Ami3637_05370 PF00281 Ribosomal protein L5 Ami3637_05375 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Ami3637_05375 PF00467 KOW motif Ami3637_05380 PF00238 Ribosomal protein L14p/L23e Ami3637_05385 PF00366 Ribosomal protein S17 Ami3637_05390 PF00831 Ribosomal L29 protein Ami3637_05395 PF00252 Ribosomal protein L16p/L10e Ami3637_05400 PF07650 KH domain Ami3637_05400 PF00189 Ribosomal protein S3, C-terminal domain Ami3637_05405 PF00237 Ribosomal protein L22p/L17e Ami3637_05410 PF00203 Ribosomal protein S19 Ami3637_05415 PF00181 Ribosomal Proteins L2, RNA binding domain Ami3637_05415 PF03947 Ribosomal Proteins L2, C-terminal domain Ami3637_05420 PF00276 Ribosomal protein L23 Ami3637_05425 PF00573 Ribosomal protein L4/L1 family Ami3637_05430 PF00297 Ribosomal protein L3 Ami3637_05435 PF00338 Ribosomal protein S10p/S20e Ami3637_05440 PF00294 pfkB family carbohydrate kinase Ami3637_05450 PF04070 Domain of unknown function (DUF378) Ami3637_05460 PF02811 PHP domain Ami3637_05465 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Ami3637_05465 PF14579 Helix-hairpin-helix motif Ami3637_05465 PF07733 Bacterial DNA polymerase III alpha NTPase domain Ami3637_05465 PF02811 PHP domain Ami3637_05470 PF01965 DJ-1/PfpI family Ami3637_05495 PF02608 ABC transporter substrate-binding protein PnrA-like Ami3637_05500 PF00156 Phosphoribosyl transferase domain Ami3637_05520 PF07195 Flagellar hook-associated protein 2 C-terminus Ami3637_05520 PF02465 Flagellar hook-associated protein 2 N-terminus Ami3637_05530 PF13614 AAA domain Ami3637_05540 PF00072 Response regulator receiver domain Ami3637_05545 PF03975 CheD chemotactic sensory transduction Ami3637_05550 PF04509 CheC-like family Ami3637_05560 PF00460 Flagella basal body rod protein Ami3637_05560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Ami3637_05565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Ami3637_05565 PF00460 Flagella basal body rod protein Ami3637_05580 PF00460 Flagella basal body rod protein Ami3637_05585 PF00395 S-layer homology domain Ami3637_05585 PF00963 Cohesin domain Ami3637_05590 PF02895 Signal transducing histidine kinase, homodimeric domain Ami3637_05590 PF09078 CheY binding Ami3637_05590 PF01627 Hpt domain Ami3637_05590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_05590 PF01584 CheW-like domain Ami3637_05595 PF01739 CheR methyltransferase, SAM binding domain Ami3637_05595 PF03705 CheR methyltransferase, all-alpha domain Ami3637_05600 PF01339 CheB methylesterase Ami3637_05600 PF00072 Response regulator receiver domain Ami3637_05605 PF02491 SHS2 domain inserted in FTSA Ami3637_05620 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Ami3637_05620 PF00460 Flagella basal body rod protein Ami3637_05635 PF02623 FliW protein Ami3637_05640 PF02599 Global regulator protein family Ami3637_05645 PF00700 Bacterial flagellin C-terminal helical region Ami3637_05645 PF00669 Bacterial flagellin N-terminal helical region Ami3637_05655 PF00202 Aminotransferase class-III Ami3637_05675 PF00535 Glycosyl transferase family 2 Ami3637_05680 PF06463 Molybdenum Cofactor Synthesis C Ami3637_05680 PF04055 Radical SAM superfamily Ami3637_05685 PF06463 Molybdenum Cofactor Synthesis C Ami3637_05685 PF04055 Radical SAM superfamily Ami3637_05690 PF06463 Molybdenum Cofactor Synthesis C Ami3637_05690 PF04055 Radical SAM superfamily Ami3637_05695 PF04055 Radical SAM superfamily Ami3637_05695 PF06463 Molybdenum Cofactor Synthesis C Ami3637_05710 PF01370 NAD dependent epimerase/dehydratase family Ami3637_05715 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Ami3637_05720 PF00132 Bacterial transferase hexapeptide (six repeats) Ami3637_05725 PF16363 GDP-mannose 4,6 dehydratase Ami3637_05730 PF00483 Nucleotidyl transferase Ami3637_05750 PF01312 FlhB HrpN YscU SpaS Family Ami3637_05760 PF01313 Bacterial export proteins, family 3 Ami3637_05765 PF00813 FliP family Ami3637_05765 PF04347 Flagellar biosynthesis protein, FliO Ami3637_05775 PF00072 Response regulator receiver domain Ami3637_05780 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Ami3637_05780 PF04509 CheC-like family Ami3637_05790 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Ami3637_05790 PF02154 Flagellar motor switch protein FliM Ami3637_05800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Ami3637_05800 PF00460 Flagella basal body rod protein Ami3637_05810 PF13860 FlgD Ig-like domain Ami3637_05810 PF03963 Flagellar hook capping protein - N-terminal region Ami3637_05810 PF13861 FlgD Tudor-like domain Ami3637_05825 PF18269 T3SS EscN ATPase C-terminal domain Ami3637_05825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Ami3637_05825 PF02874 ATP synthase alpha/beta family, beta-barrel domain Ami3637_05835 PF14841 FliG middle domain Ami3637_05835 PF01706 FliG C-terminal domain Ami3637_05835 PF14842 FliG N-terminal domain Ami3637_05840 PF01514 Secretory protein of YscJ/FliF family Ami3637_05840 PF08345 Flagellar M-ring protein C-terminal Ami3637_05845 PF02049 Flagellar hook-basal body complex protein FliE Ami3637_05850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Ami3637_05850 PF00460 Flagella basal body rod protein Ami3637_05865 PF06949 Protein of unknown function (DUF1292) Ami3637_05870 PF02151 UvrB/uvrC motif Ami3637_05870 PF01541 GIY-YIG catalytic domain Ami3637_05870 PF12826 Helix-hairpin-helix motif Ami3637_05870 PF08459 UvrC Helix-hairpin-helix N-terminal Ami3637_05875 PF07943 Penicillin-binding protein 5, C-terminal domain Ami3637_05875 PF00768 D-alanyl-D-alanine carboxypeptidase Ami3637_05880 PF01676 Metalloenzyme superfamily Ami3637_05880 PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Ami3637_05885 PF00266 Aminotransferase class-V Ami3637_05890 PF01842 ACT domain Ami3637_05890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Ami3637_05890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ami3637_05900 PF01725 Ham1 family Ami3637_05905 PF03725 3' exoribonuclease family, domain 2 Ami3637_05905 PF01138 3' exoribonuclease family, domain 1 Ami3637_05910 PF02659 Putative manganese efflux pump Ami3637_05920 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ami3637_05920 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Ami3637_05985 PF02142 MGS-like domain Ami3637_05995 PF01522 Polysaccharide deacetylase Ami3637_06005 PF00749 tRNA synthetases class I (E and Q), catalytic domain Ami3637_06015 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_06015 PF17151 Periplasmic sensor domain Ami3637_06020 PF05221 S-adenosyl-L-homocysteine hydrolase Ami3637_06020 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Ami3637_06040 PF01380 SIS domain Ami3637_06045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Ami3637_06045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Ami3637_06045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Ami3637_06045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Ami3637_06055 PF02457 DisA bacterial checkpoint controller nucleotide-binding Ami3637_06060 PF03477 ATP cone domain Ami3637_06060 PF02867 Ribonucleotide reductase, barrel domain Ami3637_06060 PF00317 Ribonucleotide reductase, all-alpha domain Ami3637_06065 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Ami3637_06065 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Ami3637_06070 PF00156 Phosphoribosyl transferase domain Ami3637_06075 PF13538 UvrD-like helicase C-terminal domain Ami3637_06075 PF14490 Helix-hairpin-helix containing domain Ami3637_06075 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Ami3637_06085 PF02540 NAD synthase Ami3637_06085 PF00795 Carbon-nitrogen hydrolase Ami3637_06090 PF00563 EAL domain Ami3637_06090 PF03707 Bacterial signalling protein N terminal repeat Ami3637_06090 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_06095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_06095 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_06095 PF00672 HAMP domain Ami3637_06095 PF14827 Double sensory domain of two-component sensor kinase Ami3637_06095 PF13426 PAS domain Ami3637_06110 PF02687 FtsX-like permease family Ami3637_06110 PF12704 MacB-like periplasmic core domain Ami3637_06120 PF00005 ABC transporter Ami3637_06135 PF02502 Ribose/Galactose Isomerase Ami3637_06140 PF01300 Telomere recombination Ami3637_06140 PF03481 Putative GTP-binding controlling metal-binding Ami3637_06150 PF01197 Ribosomal protein L31 Ami3637_06155 PF07690 Major Facilitator Superfamily Ami3637_06160 PF17827 PrmC N-terminal domain Ami3637_06160 PF05175 Methyltransferase small domain Ami3637_06165 PF07136 Protein of unknown function (DUF1385) Ami3637_06170 PF07497 Rho termination factor, RNA-binding domain Ami3637_06170 PF07498 Rho termination factor, N-terminal domain Ami3637_06170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Ami3637_06180 PF03816 Cell envelope-related transcriptional attenuator domain Ami3637_06185 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Ami3637_06185 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Ami3637_06190 PF00342 Phosphoglucose isomerase Ami3637_06195 PF02719 Polysaccharide biosynthesis protein Ami3637_06205 PF02397 Bacterial sugar transferase Ami3637_06225 PF13276 HTH-like domain Ami3637_06225 PF00665 Integrase core domain Ami3637_06225 PF13333 Integrase core domain Ami3637_06230 PF16363 GDP-mannose 4,6 dehydratase Ami3637_06250 PF00483 Nucleotidyl transferase Ami3637_06260 PF00535 Glycosyl transferase family 2 Ami3637_06270 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Ami3637_06275 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Ami3637_06300 PF05523 WxcM-like, C-terminal Ami3637_06305 PF12464 Maltose acetyltransferase Ami3637_06305 PF00132 Bacterial transferase hexapeptide (six repeats) Ami3637_06320 PF00535 Glycosyl transferase family 2 Ami3637_06335 PF01061 ABC-2 type transporter Ami3637_06340 PF16363 GDP-mannose 4,6 dehydratase Ami3637_06350 PF01370 NAD dependent epimerase/dehydratase family Ami3637_06355 PF00294 pfkB family carbohydrate kinase Ami3637_06355 PF01467 Cytidylyltransferase-like Ami3637_06360 PF13580 SIS domain Ami3637_06365 PF13439 Glycosyltransferase Family 4 Ami3637_06365 PF00534 Glycosyl transferases group 1 Ami3637_06385 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family Ami3637_06390 PF00550 Phosphopantetheine attachment site Ami3637_06405 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Ami3637_06405 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ami3637_06425 PF02397 Bacterial sugar transferase Ami3637_06435 PF02350 UDP-N-acetylglucosamine 2-epimerase Ami3637_06440 PF01370 NAD dependent epimerase/dehydratase family Ami3637_06445 PF08485 Polysaccharide biosynthesis protein C-terminal Ami3637_06445 PF02719 Polysaccharide biosynthesis protein Ami3637_06465 PF00534 Glycosyl transferases group 1 Ami3637_06475 PF03023 Lipid II flippase MurJ Ami3637_06480 PF00331 Glycosyl hydrolase family 10 Ami3637_06480 PF02018 Carbohydrate binding domain Ami3637_06480 PF06452 Carbohydrate family 9 binding domain-like Ami3637_06480 PF00395 S-layer homology domain Ami3637_06505 PF00474 Sodium:solute symporter family Ami3637_06515 PF06452 Carbohydrate family 9 binding domain-like Ami3637_06515 PF02018 Carbohydrate binding domain Ami3637_06515 PF00331 Glycosyl hydrolase family 10 Ami3637_06515 PF00395 S-layer homology domain Ami3637_06520 PF00654 Voltage gated chloride channel Ami3637_06530 PF00005 ABC transporter Ami3637_06530 PF12558 ATP-binding cassette cobalt transporter Ami3637_06535 PF07155 ECF-type riboflavin transporter, S component Ami3637_06545 PF08903 Domain of unknown function (DUF1846) Ami3637_06550 PF00689 Cation transporting ATPase, C-terminus Ami3637_06550 PF00690 Cation transporter/ATPase, N-terminus Ami3637_06555 PF03572 Peptidase family S41 Ami3637_06555 PF01471 Putative peptidoglycan binding domain Ami3637_06555 PF17820 PDZ domain Ami3637_06565 PF07478 D-ala D-ala ligase C-terminus Ami3637_06565 PF01820 D-ala D-ala ligase N-terminus Ami3637_06570 PF01430 Hsp33 protein Ami3637_06575 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Ami3637_06575 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Ami3637_06575 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Ami3637_06575 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Ami3637_06580 PF13180 PDZ domain Ami3637_06585 PF09551 Stage II sporulation protein R (spore_II_R) Ami3637_06595 PF04509 CheC-like family Ami3637_06600 PF07729 FCD domain Ami3637_06600 PF00392 Bacterial regulatory proteins, gntR family Ami3637_06605 PF00288 GHMP kinases N terminal domain Ami3637_06605 PF08544 GHMP kinases C terminal Ami3637_06610 PF00288 GHMP kinases N terminal domain Ami3637_06610 PF08544 GHMP kinases C terminal Ami3637_06620 PF14437 MafB19-like deaminase Ami3637_06625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Ami3637_06625 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami3637_06650 PF02417 Chromate transporter Ami3637_06675 PF01381 Helix-turn-helix Ami3637_06685 PF00155 Aminotransferase class I and II Ami3637_06720 PF01037 Lrp/AsnC ligand binding domain Ami3637_06735 PF05569 BlaR1 peptidase M56 Ami3637_06735 PF00905 Penicillin binding protein transpeptidase domain Ami3637_06770 PF00005 ABC transporter Ami3637_06770 PF02687 FtsX-like permease family Ami3637_06770 PF12704 MacB-like periplasmic core domain Ami3637_06775 PF13533 Biotin-lipoyl like Ami3637_06795 PF10397 Adenylosuccinate lyase C-terminus Ami3637_06795 PF00206 Lyase Ami3637_06810 PF00899 ThiF family Ami3637_06815 PF00860 Permease family Ami3637_06820 PF05525 Branched-chain amino acid transport protein Ami3637_06825 PF01183 Glycosyl hydrolases family 25 Ami3637_06835 PF04055 Radical SAM superfamily Ami3637_06840 PF01228 Glycine radical Ami3637_06840 PF02901 Pyruvate formate lyase-like Ami3637_06850 PF07969 Amidohydrolase family Ami3637_06855 PF00842 Alanine racemase, C-terminal domain Ami3637_06855 PF01168 Alanine racemase, N-terminal domain Ami3637_06865 PF00392 Bacterial regulatory proteins, gntR family Ami3637_06865 PF07729 FCD domain Ami3637_06870 PF07837 Formiminotransferase domain, N-terminal subdomain Ami3637_06870 PF02971 Formiminotransferase domain Ami3637_06885 PF17392 Urocanase C-terminal domain Ami3637_06885 PF17391 Urocanase N-terminal domain Ami3637_06885 PF01175 Urocanase Rossmann-like domain Ami3637_06890 PF00221 Aromatic amino acid lyase Ami3637_06925 PF00171 Aldehyde dehydrogenase family Ami3637_06960 PF00291 Pyridoxal-phosphate dependent enzyme Ami3637_06960 PF13291 ACT domain Ami3637_06985 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Ami3637_06985 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Ami3637_06990 PF10369 Small subunit of acetolactate synthase Ami3637_06995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ami3637_06995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Ami3637_06995 PF00205 Thiamine pyrophosphate enzyme, central domain Ami3637_07000 PF00682 HMGL-like Ami3637_07000 PF08502 LeuA allosteric (dimerisation) domain Ami3637_07010 PF00694 Aconitase C-terminal domain Ami3637_07015 PF00330 Aconitase family (aconitate hydratase) Ami3637_07020 PF00694 Aconitase C-terminal domain Ami3637_07025 PF00330 Aconitase family (aconitate hydratase) Ami3637_07035 PF00563 EAL domain Ami3637_07035 PF13426 PAS domain Ami3637_07035 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_07040 PF00793 DAHP synthetase I family Ami3637_07040 PF18152 DAHP synthase ferredoxin-like domain Ami3637_07045 PF01842 ACT domain Ami3637_07045 PF02153 Prephenate dehydrogenase Ami3637_07050 PF01761 3-dehydroquinate synthase Ami3637_07055 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Ami3637_07060 PF01264 Chorismate synthase Ami3637_07070 PF08501 Shikimate dehydrogenase substrate binding domain Ami3637_07075 PF01487 Type I 3-dehydroquinase Ami3637_07085 PF05656 Protein of unknown function (DUF805) Ami3637_07095 PF01202 Shikimate kinase Ami3637_07100 PF01042 Endoribonuclease L-PSP Ami3637_07105 PF04073 Aminoacyl-tRNA editing domain Ami3637_07120 PF00583 Acetyltransferase (GNAT) family Ami3637_07125 PF13302 Acetyltransferase (GNAT) domain Ami3637_07140 PF00398 Ribosomal RNA adenine dimethylase Ami3637_07145 PF13331 Domain of unknown function (DUF4093) Ami3637_07145 PF01751 Toprim domain Ami3637_07180 PF00672 HAMP domain Ami3637_07180 PF13426 PAS domain Ami3637_07180 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_07180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_07190 PF00072 Response regulator receiver domain Ami3637_07190 PF00486 Transcriptional regulatory protein, C terminal Ami3637_07200 PF00672 HAMP domain Ami3637_07200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_07200 PF02203 Tar ligand binding domain homologue Ami3637_07205 PF00082 Subtilase family Ami3637_07210 PF00082 Subtilase family Ami3637_07225 PF01546 Peptidase family M20/M25/M40 Ami3637_07230 PF03553 Na+/H+ antiporter family Ami3637_07250 PF00485 Phosphoribulokinase / Uridine kinase family Ami3637_07255 PF08525 Opacity-associated protein A N-terminal motif Ami3637_07255 PF01476 LysM domain Ami3637_07255 PF01551 Peptidase family M23 Ami3637_07275 PF03796 DnaB-like helicase C terminal domain Ami3637_07275 PF00772 DnaB-like helicase N terminal domain Ami3637_07280 PF03948 Ribosomal protein L9, C-terminal domain Ami3637_07280 PF01281 Ribosomal protein L9, N-terminal domain Ami3637_07285 PF02272 DHHA1 domain Ami3637_07285 PF01368 DHH family Ami3637_07295 PF01084 Ribosomal protein S18 Ami3637_07300 PF00436 Single-strand binding protein family Ami3637_07305 PF01250 Ribosomal protein S6 Ami3637_07310 PF00294 pfkB family carbohydrate kinase Ami3637_07310 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Ami3637_07330 PF02608 ABC transporter substrate-binding protein PnrA-like Ami3637_07340 PF01156 Inosine-uridine preferring nucleoside hydrolase Ami3637_07355 PF02540 NAD synthase Ami3637_07365 PF00293 NUDIX domain Ami3637_07370 PF01569 PAP2 superfamily Ami3637_07380 PF00464 Serine hydroxymethyltransferase Ami3637_07390 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_07390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_07395 PF00486 Transcriptional regulatory protein, C terminal Ami3637_07395 PF00072 Response regulator receiver domain Ami3637_07410 PF00005 ABC transporter Ami3637_07415 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Ami3637_07415 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Ami3637_07420 PF00579 tRNA synthetases class I (W and Y) Ami3637_07425 PF04545 Sigma-70, region 4 Ami3637_07425 PF04542 Sigma-70 region 2 Ami3637_07425 PF04539 Sigma-70 region 3 Ami3637_07430 PF13581 Histidine kinase-like ATPase domain Ami3637_07435 PF00521 DNA gyrase/topoisomerase IV, subunit A Ami3637_07435 PF03989 DNA gyrase C-terminal domain, beta-propeller Ami3637_07440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_07440 PF00204 DNA gyrase B Ami3637_07440 PF00986 DNA gyrase B subunit, carboxyl terminus Ami3637_07440 PF01751 Toprim domain Ami3637_07450 PF02463 RecF/RecN/SMC N terminal domain Ami3637_07455 PF02768 DNA polymerase III beta subunit, C-terminal domain Ami3637_07455 PF02767 DNA polymerase III beta subunit, central domain Ami3637_07455 PF00712 DNA polymerase III beta subunit, N-terminal domain Ami3637_07460 PF08299 Bacterial dnaA protein helix-turn-helix Ami3637_07460 PF00308 Bacterial dnaA protein Ami3637_07460 PF11638 DnaA N-terminal domain Ami3637_07465 PF00468 Ribosomal protein L34 Ami3637_07480 PF14849 YidC periplasmic domain Ami3637_07480 PF02096 60Kd inner membrane protein Ami3637_07485 PF14804 Jag N-terminus Ami3637_07485 PF01424 R3H domain Ami3637_07490 PF01926 50S ribosome-binding GTPase Ami3637_07490 PF12631 MnmE helical domain Ami3637_07490 PF10396 GTP-binding protein TrmE N-terminus Ami3637_07495 PF01134 Glucose inhibited division protein A Ami3637_07495 PF13932 GidA associated domain Ami3637_07500 PF02527 rRNA small subunit methyltransferase G Ami3637_07505 PF02195 ParB-like nuclease domain Ami3637_07505 PF17762 HTH domain found in ParB protein Ami3637_07510 PF13614 AAA domain Ami3637_07515 PF17762 HTH domain found in ParB protein Ami3637_07515 PF02195 ParB-like nuclease domain Ami3637_07520 PF06961 Protein of unknown function (DUF1294) Ami3637_07525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Ami3637_07530 PF00005 ABC transporter Ami3637_07535 PF12704 MacB-like periplasmic core domain Ami3637_07535 PF02687 FtsX-like permease family Ami3637_07540 PF07702 UTRA domain Ami3637_07540 PF00392 Bacterial regulatory proteins, gntR family Ami3637_07545 PF00392 Bacterial regulatory proteins, gntR family Ami3637_07570 PF00893 Small Multidrug Resistance protein Ami3637_07575 PF00266 Aminotransferase class-V Ami3637_07580 PF00075 RNase H Ami3637_07605 PF02590 Predicted SPOUT methyltransferase Ami3637_07620 PF01022 Bacterial regulatory protein, arsR family Ami3637_07630 PF03707 Bacterial signalling protein N terminal repeat Ami3637_07630 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_07630 PF00563 EAL domain Ami3637_07635 PF01276 Orn/Lys/Arg decarboxylase, major domain Ami3637_07635 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Ami3637_07640 PF17284 Spermidine synthase tetramerisation domain Ami3637_07645 PF00491 Arginase family Ami3637_07655 PF00905 Penicillin binding protein transpeptidase domain Ami3637_07655 PF05569 BlaR1 peptidase M56 Ami3637_07660 PF03965 Penicillinase repressor Ami3637_07665 PF03553 Na+/H+ antiporter family Ami3637_07670 PF00158 Sigma-54 interaction domain Ami3637_07670 PF02954 Bacterial regulatory protein, Fis family Ami3637_07670 PF13426 PAS domain Ami3637_07675 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Ami3637_07675 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Ami3637_07685 PF02954 Bacterial regulatory protein, Fis family Ami3637_07685 PF00158 Sigma-54 interaction domain Ami3637_07685 PF13426 PAS domain Ami3637_07700 PF00291 Pyridoxal-phosphate dependent enzyme Ami3637_07705 PF16552 D-ornithine 4,5-aminomutase alpha-subunit Ami3637_07710 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase Ami3637_07710 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Ami3637_07710 PF02310 B12 binding domain Ami3637_07725 PF02203 Tar ligand binding domain homologue Ami3637_07725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_07725 PF00672 HAMP domain Ami3637_07730 PF01541 GIY-YIG catalytic domain Ami3637_07735 PF00205 Thiamine pyrophosphate enzyme, central domain Ami3637_07735 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Ami3637_07735 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ami3637_07740 PF01584 CheW-like domain Ami3637_07740 PF00072 Response regulator receiver domain Ami3637_07745 PF01967 MoaC family Ami3637_07750 PF01261 Xylose isomerase-like TIM barrel Ami3637_07820 PF00301 Rubredoxin Ami3637_07825 PF01545 Cation efflux family Ami3637_07825 PF16916 Dimerisation domain of Zinc Transporter Ami3637_07845 PF03577 Peptidase family C69 Ami3637_07855 PF00266 Aminotransferase class-V Ami3637_07860 PF02669 K+-transporting ATPase, c chain Ami3637_07875 PF03814 Potassium-transporting ATPase A subunit Ami3637_07885 PF00072 Response regulator receiver domain Ami3637_07885 PF00486 Transcriptional regulatory protein, C terminal Ami3637_07890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_07890 PF02702 Osmosensitive K+ channel His kinase sensor domain Ami3637_07890 PF13493 Domain of unknown function (DUF4118) Ami3637_07890 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_07895 PF02254 TrkA-N domain Ami3637_07895 PF00999 Sodium/hydrogen exchanger family Ami3637_07910 PF01037 Lrp/AsnC ligand binding domain Ami3637_07920 PF00486 Transcriptional regulatory protein, C terminal Ami3637_07920 PF00072 Response regulator receiver domain Ami3637_07925 PF00768 D-alanyl-D-alanine carboxypeptidase Ami3637_07925 PF07943 Penicillin-binding protein 5, C-terminal domain Ami3637_07930 PF01168 Alanine racemase, N-terminal domain Ami3637_07935 PF00005 ABC transporter Ami3637_07940 PF01053 Cys/Met metabolism PLP-dependent enzyme Ami3637_07945 PF00497 Bacterial extracellular solute-binding proteins, family 3 Ami3637_07950 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_07960 PF00158 Sigma-54 interaction domain Ami3637_07960 PF13426 PAS domain Ami3637_07960 PF02954 Bacterial regulatory protein, Fis family Ami3637_07965 PF13520 Amino acid permease Ami3637_07970 PF07969 Amidohydrolase family Ami3637_07985 PF00963 Cohesin domain Ami3637_07985 PF00395 S-layer homology domain Ami3637_07990 PF01546 Peptidase family M20/M25/M40 Ami3637_07990 PF07687 Peptidase dimerisation domain Ami3637_08010 PF03606 C4-dicarboxylate anaerobic carrier Ami3637_08070 PF03699 Uncharacterised protein family (UPF0182) Ami3637_08080 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Ami3637_08080 PF02403 Seryl-tRNA synthetase N-terminal domain Ami3637_08100 PF13533 Biotin-lipoyl like Ami3637_08120 PF00873 AcrB/AcrD/AcrF family Ami3637_08130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_08130 PF02203 Tar ligand binding domain homologue Ami3637_08130 PF00672 HAMP domain Ami3637_08135 PF04607 Region found in RelA / SpoT proteins Ami3637_08145 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_08150 PF02625 XdhC and CoxI family Ami3637_08150 PF13478 XdhC Rossmann domain Ami3637_08160 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Ami3637_08160 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Ami3637_08165 PF00672 HAMP domain Ami3637_08165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_08165 PF02743 Cache domain Ami3637_08170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_08170 PF00672 HAMP domain Ami3637_08170 PF02743 Cache domain Ami3637_08175 PF01022 Bacterial regulatory protein, arsR family Ami3637_08180 PF00403 Heavy-metal-associated domain Ami3637_08190 PF07969 Amidohydrolase family Ami3637_08195 PF01979 Amidohydrolase family Ami3637_08205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami3637_08205 PF03466 LysR substrate binding domain Ami3637_08210 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Ami3637_08210 PF10531 SLBB domain Ami3637_08210 PF13375 RnfC Barrel sandwich hybrid domain Ami3637_08210 PF13237 4Fe-4S dicluster domain Ami3637_08220 PF04205 FMN-binding domain Ami3637_08225 PF02508 Rnf-Nqr subunit, membrane protein Ami3637_08230 PF02508 Rnf-Nqr subunit, membrane protein Ami3637_08235 PF04060 Putative Fe-S cluster Ami3637_08235 PF00037 4Fe-4S binding domain Ami3637_08235 PF13187 4Fe-4S dicluster domain Ami3637_08280 PF02424 ApbE family Ami3637_08300 PF00005 ABC transporter Ami3637_08320 PF09383 NIL domain Ami3637_08320 PF00005 ABC transporter Ami3637_08340 PF13426 PAS domain Ami3637_08340 PF00158 Sigma-54 interaction domain Ami3637_08340 PF02954 Bacterial regulatory protein, Fis family Ami3637_08350 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Ami3637_08350 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Ami3637_08355 PF01235 Sodium:alanine symporter family Ami3637_08370 PF01734 Patatin-like phospholipase Ami3637_08375 PF00391 PEP-utilising enzyme, mobile domain Ami3637_08375 PF02887 Pyruvate kinase, alpha/beta domain Ami3637_08375 PF00224 Pyruvate kinase, barrel domain Ami3637_08405 PF00005 ABC transporter Ami3637_08420 PF12146 Serine aminopeptidase, S33 Ami3637_08425 PF00005 ABC transporter Ami3637_08435 PF02146 Sir2 family Ami3637_08440 PF01734 Patatin-like phospholipase Ami3637_08445 PF12849 PBP superfamily domain Ami3637_08450 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_08455 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_08460 PF00005 ABC transporter Ami3637_08465 PF01895 PhoU domain Ami3637_08470 PF00486 Transcriptional regulatory protein, C terminal Ami3637_08470 PF00072 Response regulator receiver domain Ami3637_08490 PF01975 Survival protein SurE Ami3637_08500 PF02803 Thiolase, C-terminal domain Ami3637_08500 PF00108 Thiolase, N-terminal domain Ami3637_08510 PF00497 Bacterial extracellular solute-binding proteins, family 3 Ami3637_08515 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_08520 PF00005 ABC transporter Ami3637_08545 PF02441 Flavoprotein Ami3637_08545 PF04127 DNA / pantothenate metabolism flavoprotein Ami3637_08550 PF00749 tRNA synthetases class I (E and Q), catalytic domain Ami3637_08550 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain Ami3637_08555 PF00390 Malic enzyme, N-terminal domain Ami3637_08555 PF03949 Malic enzyme, NAD binding domain Ami3637_08560 PF00672 HAMP domain Ami3637_08560 PF00072 Response regulator receiver domain Ami3637_08560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_08560 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Ami3637_08560 PF01627 Hpt domain Ami3637_08560 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_08570 PF01985 CRS1 / YhbY (CRM) domain Ami3637_08575 PF01416 tRNA pseudouridine synthase Ami3637_08580 PF14437 MafB19-like deaminase Ami3637_08585 PF00953 Glycosyl transferase family 4 Ami3637_08590 PF02350 UDP-N-acetylglucosamine 2-epimerase Ami3637_08595 PF01554 MatE Ami3637_08605 PF00119 ATP synthase A chain Ami3637_08610 PF00137 ATP synthase subunit C Ami3637_08615 PF00430 ATP synthase B/B' CF(0) Ami3637_08620 PF00213 ATP synthase delta (OSCP) subunit Ami3637_08625 PF02874 ATP synthase alpha/beta family, beta-barrel domain Ami3637_08625 PF00306 ATP synthase alpha/beta chain, C terminal domain Ami3637_08625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Ami3637_08630 PF00231 ATP synthase Ami3637_08635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Ami3637_08635 PF02874 ATP synthase alpha/beta family, beta-barrel domain Ami3637_08640 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Ami3637_08640 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain Ami3637_08650 PF07694 5TMR of 5TMR-LYT Ami3637_08650 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_08670 PF04023 FeoA domain Ami3637_08670 PF07664 Ferrous iron transport protein B C terminus Ami3637_08670 PF07670 Nucleoside recognition Ami3637_08670 PF17910 FeoB cytosolic helical domain Ami3637_08670 PF02421 Ferrous iron transport protein B Ami3637_08675 PF01464 Transglycosylase SLT domain Ami3637_08675 PF10145 Phage-related minor tail protein Ami3637_08675 PF01551 Peptidase family M23 Ami3637_08680 PF03315 Serine dehydratase beta chain Ami3637_08680 PF01842 ACT domain Ami3637_08690 PF01008 Initiation factor 2 subunit family Ami3637_08700 PF02616 Segregation and condensation protein ScpA Ami3637_08720 PF07943 Penicillin-binding protein 5, C-terminal domain Ami3637_08720 PF00768 D-alanyl-D-alanine carboxypeptidase Ami3637_08735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_08755 PF03788 LrgA family Ami3637_08760 PF04172 LrgB-like family Ami3637_08770 PF07729 FCD domain Ami3637_08770 PF00392 Bacterial regulatory proteins, gntR family Ami3637_08780 PF00731 AIR carboxylase Ami3637_08785 PF01259 SAICAR synthetase Ami3637_08790 PF00156 Phosphoribosyl transferase domain Ami3637_08795 PF00586 AIR synthase related protein, N-terminal domain Ami3637_08795 PF02769 AIR synthase related protein, C-terminal domain Ami3637_08800 PF00551 Formyl transferase Ami3637_08805 PF01808 AICARFT/IMPCHase bienzyme Ami3637_08805 PF02142 MGS-like domain Ami3637_08820 PF05569 BlaR1 peptidase M56 Ami3637_08820 PF00905 Penicillin binding protein transpeptidase domain Ami3637_08905 PF00486 Transcriptional regulatory protein, C terminal Ami3637_08905 PF00072 Response regulator receiver domain Ami3637_08915 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_08915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_08915 PF00989 PAS fold Ami3637_08915 PF16736 Single Cache-like Ami3637_08925 PF00873 AcrB/AcrD/AcrF family Ami3637_08935 PF13677 Membrane MotB of proton-channel complex MotA/MotB Ami3637_08935 PF00691 OmpA family Ami3637_08940 PF01479 S4 domain Ami3637_08940 PF00849 RNA pseudouridylate synthase Ami3637_08960 PF00072 Response regulator receiver domain Ami3637_08965 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami3637_08965 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Ami3637_08970 PF06445 GyrI-like small molecule binding domain Ami3637_08970 PF13411 MerR HTH family regulatory protein Ami3637_08975 PF00440 Bacterial regulatory proteins, tetR family Ami3637_08975 PF18665 Tetracyclin repressor-like, C-terminal domain Ami3637_08990 PF07690 Major Facilitator Superfamily Ami3637_08995 PF02954 Bacterial regulatory protein, Fis family Ami3637_08995 PF00158 Sigma-54 interaction domain Ami3637_08995 PF13426 PAS domain Ami3637_09005 PF01546 Peptidase family M20/M25/M40 Ami3637_09010 PF00324 Amino acid permease Ami3637_09025 PF00395 S-layer homology domain Ami3637_09025 PF00963 Cohesin domain Ami3637_09045 PF00486 Transcriptional regulatory protein, C terminal Ami3637_09045 PF00072 Response regulator receiver domain Ami3637_09050 PF07689 KaiB domain Ami3637_09050 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_09050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_09055 PF00005 ABC transporter Ami3637_09055 PF02687 FtsX-like permease family Ami3637_09055 PF12704 MacB-like periplasmic core domain Ami3637_09065 PF13932 GidA associated domain Ami3637_09065 PF01134 Glucose inhibited division protein A Ami3637_09065 PF13932 GidA associated domain Ami3637_09065 PF01134 Glucose inhibited division protein A Ami3637_09075 PF02833 DHHA2 domain Ami3637_09075 PF00571 CBS domain Ami3637_09075 PF07085 DRTGG domain Ami3637_09075 PF01368 DHH family Ami3637_09080 PF01546 Peptidase family M20/M25/M40 Ami3637_09080 PF07687 Peptidase dimerisation domain Ami3637_09085 PF01546 Peptidase family M20/M25/M40 Ami3637_09085 PF07687 Peptidase dimerisation domain Ami3637_09095 PF00206 Lyase Ami3637_09095 PF14698 Argininosuccinate lyase C-terminal Ami3637_09105 PF01799 [2Fe-2S] binding domain Ami3637_09105 PF00111 2Fe-2S iron-sulfur cluster binding domain Ami3637_09110 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Ami3637_09110 PF01799 [2Fe-2S] binding domain Ami3637_09110 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Ami3637_09120 PF03061 Thioesterase superfamily Ami3637_09125 PF00158 Sigma-54 interaction domain Ami3637_09140 PF12544 Lysine-2,3-aminomutase Ami3637_09140 PF04055 Radical SAM superfamily Ami3637_09150 PF01713 Smr domain Ami3637_09150 PF00488 MutS domain V Ami3637_09155 PF09043 D-Lysine 5,6-aminomutase TIM-barrel domain of alpha subunit Ami3637_09160 PF16554 Dimerisation domain of d-ornithine 4,5-aminomutase Ami3637_09160 PF02310 B12 binding domain Ami3637_09165 PF01144 Coenzyme A transferase Ami3637_09170 PF01144 Coenzyme A transferase Ami3637_09175 PF00072 Response regulator receiver domain Ami3637_09175 PF01584 CheW-like domain Ami3637_09195 PF01520 N-acetylmuramoyl-L-alanine amidase Ami3637_09195 PF01476 LysM domain Ami3637_09210 PF00438 S-adenosylmethionine synthetase, N-terminal domain Ami3637_09210 PF02772 S-adenosylmethionine synthetase, central domain Ami3637_09210 PF02773 S-adenosylmethionine synthetase, C-terminal domain Ami3637_09215 PF00696 Amino acid kinase family Ami3637_09215 PF13840 ACT domain Ami3637_09220 PF04204 Homoserine O-succinyltransferase Ami3637_09225 PF12801 4Fe-4S binding domain Ami3637_09230 PF00571 CBS domain Ami3637_09230 PF03471 Transporter associated domain Ami3637_09230 PF01595 Cyclin M transmembrane N-terminal domain Ami3637_09235 PF07516 SecA Wing and Scaffold domain Ami3637_09235 PF02810 SEC-C motif Ami3637_09235 PF01043 SecA preprotein cross-linking domain Ami3637_09235 PF07517 SecA DEAD-like domain Ami3637_09245 PF09371 Tex-like protein N-terminal domain Ami3637_09245 PF16921 Tex protein YqgF-like domain Ami3637_09245 PF00575 S1 RNA binding domain Ami3637_09245 PF17674 HHH domain Ami3637_09255 PF13419 Haloacid dehalogenase-like hydrolase Ami3637_09260 PF13439 Glycosyltransferase Family 4 Ami3637_09260 PF00534 Glycosyl transferases group 1 Ami3637_09265 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Ami3637_09265 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Ami3637_09270 PF03060 Nitronate monooxygenase Ami3637_09275 PF00698 Acyl transferase domain Ami3637_09290 PF07977 FabA-like domain Ami3637_09295 PF03060 Nitronate monooxygenase Ami3637_09305 PF12705 PD-(D/E)XK nuclease superfamily Ami3637_09310 PF12705 PD-(D/E)XK nuclease superfamily Ami3637_09330 PF09297 NADH pyrophosphatase zinc ribbon domain Ami3637_09330 PF00293 NUDIX domain Ami3637_09365 PF02743 Cache domain Ami3637_09365 PF00672 HAMP domain Ami3637_09365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_09370 PF00196 Bacterial regulatory proteins, luxR family Ami3637_09370 PF00072 Response regulator receiver domain Ami3637_09505 PF16450 Proteasomal ATPase OB C-terminal domain Ami3637_09505 PF00004 ATPase family associated with various cellular activities (AAA) Ami3637_09505 PF17758 Proteasomal ATPase OB N-terminal domain Ami3637_09510 PF00196 Bacterial regulatory proteins, luxR family Ami3637_09510 PF00072 Response regulator receiver domain Ami3637_09515 PF12282 Signal transduction histidine kinase Ami3637_09515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_09515 PF07568 Histidine kinase Ami3637_09520 PF10662 Ethanolamine utilisation - propanediol utilisation Ami3637_09525 PF00936 BMC domain Ami3637_09530 PF00072 Response regulator receiver domain Ami3637_09530 PF03861 ANTAR domain Ami3637_09535 PF12282 Signal transduction histidine kinase Ami3637_09535 PF07568 Histidine kinase Ami3637_09535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_09545 PF06751 Ethanolamine ammonia lyase large subunit (EutB) Ami3637_09555 PF00936 BMC domain Ami3637_09560 PF00936 BMC domain Ami3637_09570 PF00936 BMC domain Ami3637_09575 PF00936 BMC domain Ami3637_09585 PF06130 Phosphate propanoyltransferase Ami3637_09595 PF03319 Ethanolamine utilisation protein EutN/carboxysome Ami3637_09655 PF04389 Peptidase family M28 Ami3637_09655 PF02225 PA domain Ami3637_09665 PF13193 AMP-binding enzyme C-terminal domain Ami3637_09665 PF00501 AMP-binding enzyme Ami3637_09670 PF00501 AMP-binding enzyme Ami3637_09675 PF01168 Alanine racemase, N-terminal domain Ami3637_09680 PF00892 EamA-like transporter family Ami3637_09685 PF00486 Transcriptional regulatory protein, C terminal Ami3637_09685 PF00072 Response regulator receiver domain Ami3637_09690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_09695 PF00005 ABC transporter Ami3637_09705 PF00486 Transcriptional regulatory protein, C terminal Ami3637_09705 PF00072 Response regulator receiver domain Ami3637_09710 PF00989 PAS fold Ami3637_09710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_09710 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_09710 PF16736 Single Cache-like Ami3637_09720 PF02557 D-alanyl-D-alanine carboxypeptidase Ami3637_09725 PF00072 Response regulator receiver domain Ami3637_09725 PF04397 LytTr DNA-binding domain Ami3637_09745 PF03551 Transcriptional regulator PadR-like family Ami3637_09770 PF13411 MerR HTH family regulatory protein Ami3637_09770 PF06445 GyrI-like small molecule binding domain Ami3637_09775 PF04474 Protein of unknown function (DUF554) Ami3637_09780 PF02915 Rubrerythrin Ami3637_09790 PF01106 NifU-like domain Ami3637_09800 PF01546 Peptidase family M20/M25/M40 Ami3637_09805 PF12822 ECF transporter, substrate-specific component Ami3637_09815 PF00814 Glycoprotease family Ami3637_09820 PF00583 Acetyltransferase (GNAT) family Ami3637_09830 PF00814 Glycoprotease family Ami3637_09835 PF12848 ABC transporter Ami3637_09835 PF16326 ABC transporter C-terminal domain Ami3637_09835 PF00005 ABC transporter Ami3637_09840 PF00550 Phosphopantetheine attachment site Ami3637_09845 PF02629 CoA binding domain Ami3637_09845 PF06971 Putative DNA-binding protein N-terminus Ami3637_09850 PF13187 4Fe-4S dicluster domain Ami3637_09865 PF04474 Protein of unknown function (DUF554) Ami3637_09870 PF00166 Chaperonin 10 Kd subunit Ami3637_09875 PF00118 TCP-1/cpn60 chaperonin family Ami3637_09880 PF00072 Response regulator receiver domain Ami3637_09880 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_09895 PF01235 Sodium:alanine symporter family Ami3637_09905 PF02557 D-alanyl-D-alanine carboxypeptidase Ami3637_09910 PF00571 CBS domain Ami3637_09910 PF00478 IMP dehydrogenase / GMP reductase domain Ami3637_09915 PF00117 Glutamine amidotransferase class-I Ami3637_09915 PF00958 GMP synthase C terminal domain Ami3637_09945 PF00395 S-layer homology domain Ami3637_09955 PF00239 Resolvase, N terminal domain Ami3637_09955 PF02796 Helix-turn-helix domain of resolvase Ami3637_10000 PF00561 alpha/beta hydrolase fold Ami3637_10080 PF00324 Amino acid permease Ami3637_10085 PF03466 LysR substrate binding domain Ami3637_10085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami3637_10090 PF01048 Phosphorylase superfamily Ami3637_10100 PF00291 Pyridoxal-phosphate dependent enzyme Ami3637_10130 PF06445 GyrI-like small molecule binding domain Ami3637_10130 PF12833 Helix-turn-helix domain Ami3637_10155 PF01594 AI-2E family transporter Ami3637_10165 PF18277 AbrB C-terminal domain Ami3637_10165 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Ami3637_10175 PF01638 HxlR-like helix-turn-helix Ami3637_10180 PF00805 Pentapeptide repeats (8 copies) Ami3637_10185 PF02583 Metal-sensitive transcriptional repressor Ami3637_10190 PF00403 Heavy-metal-associated domain Ami3637_10195 PF02569 Pantoate-beta-alanine ligase Ami3637_10200 PF04073 Aminoacyl-tRNA editing domain Ami3637_10205 PF01554 MatE Ami3637_10210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_10210 PF02743 Cache domain Ami3637_10210 PF00672 HAMP domain Ami3637_10220 PF00672 HAMP domain Ami3637_10220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_10220 PF02743 Cache domain Ami3637_10225 PF09383 NIL domain Ami3637_10225 PF00005 ABC transporter Ami3637_10230 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_10235 PF03180 NLPA lipoprotein Ami3637_10245 PF01177 Asp/Glu/Hydantoin racemase Ami3637_10255 PF00572 Ribosomal protein L13 Ami3637_10260 PF00380 Ribosomal protein S9/S16 Ami3637_10265 PF00183 Hsp90 protein Ami3637_10275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Ami3637_10275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Ami3637_10275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Ami3637_10275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Ami3637_10285 PF00005 ABC transporter Ami3637_10290 PF00005 ABC transporter Ami3637_10290 PF12399 Branched-chain amino acid ATP-binding cassette transporter Ami3637_10295 PF02653 Branched-chain amino acid transport system / permease component Ami3637_10295 PF11862 Domain of unknown function (DUF3382) Ami3637_10300 PF02653 Branched-chain amino acid transport system / permease component Ami3637_10315 PF02261 Aspartate decarboxylase Ami3637_10320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Ami3637_10325 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Ami3637_10335 PF00890 FAD binding domain Ami3637_10335 PF02910 Fumarate reductase flavoprotein C-term Ami3637_10345 PF13085 2Fe-2S iron-sulfur cluster binding domain Ami3637_10345 PF13183 4Fe-4S dicluster domain Ami3637_10350 PF01661 Macro domain Ami3637_10370 PF01266 FAD dependent oxidoreductase Ami3637_10370 PF00355 Rieske [2Fe-2S] domain Ami3637_10375 PF01979 Amidohydrolase family Ami3637_10405 PF02654 Cobalamin-5-phosphate synthase Ami3637_10415 PF00664 ABC transporter transmembrane region Ami3637_10415 PF00005 ABC transporter Ami3637_10420 PF00005 ABC transporter Ami3637_10420 PF00664 ABC transporter transmembrane region Ami3637_10425 PF03099 Biotin/lipoate A/B protein ligase family Ami3637_10425 PF02237 Biotin protein ligase C terminal domain Ami3637_10425 PF08279 HTH domain Ami3637_10430 PF02632 BioY family Ami3637_10445 PF09334 tRNA synthetases class I (M) Ami3637_10445 PF08264 Anticodon-binding domain of tRNA Ami3637_10445 PF01588 Putative tRNA binding domain Ami3637_10450 PF00270 DEAD/DEAH box helicase Ami3637_10450 PF00271 Helicase conserved C-terminal domain Ami3637_10455 PF04542 Sigma-70 region 2 Ami3637_10455 PF08281 Sigma-70, region 4 Ami3637_10460 PF01425 Amidase Ami3637_10465 PF02203 Tar ligand binding domain homologue Ami3637_10465 PF00672 HAMP domain Ami3637_10465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_10475 PF00535 Glycosyl transferase family 2 Ami3637_10490 PF01026 TatD related DNase Ami3637_10505 PF07228 Stage II sporulation protein E (SpoIIE) Ami3637_10515 PF12848 ABC transporter Ami3637_10515 PF00005 ABC transporter Ami3637_10515 PF16326 ABC transporter C-terminal domain Ami3637_10520 PF01171 PP-loop family Ami3637_10520 PF11734 TilS substrate C-terminal domain Ami3637_10525 PF00004 ATPase family associated with various cellular activities (AAA) Ami3637_10525 PF17862 AAA+ lid domain Ami3637_10525 PF01434 Peptidase family M41 Ami3637_10530 PF17853 GGDEF-like domain Ami3637_10530 PF13556 PucR C-terminal helix-turn-helix domain Ami3637_10530 PF06018 CodY GAF-like domain Ami3637_10550 PF00364 Biotin-requiring enzyme Ami3637_10560 PF03309 Type III pantothenate kinase Ami3637_10565 PF01207 Dihydrouridine synthase (Dus) Ami3637_10570 PF01272 Transcription elongation factor, GreA/GreB, C-term Ami3637_10570 PF03449 Transcription elongation factor, N-terminal Ami3637_10580 PF01336 OB-fold nucleic acid binding domain Ami3637_10580 PF00152 tRNA synthetases class II (D, K and N) Ami3637_10585 PF00710 Asparaginase, N-terminal Ami3637_10585 PF17763 Glutaminase/Asparaginase C-terminal domain Ami3637_10595 PF00009 Elongation factor Tu GTP binding domain Ami3637_10595 PF03764 Elongation factor G, domain IV Ami3637_10595 PF14492 Elongation Factor G, domain II Ami3637_10595 PF00679 Elongation factor G C-terminus Ami3637_10595 PF03144 Elongation factor Tu domain 2 Ami3637_10600 PF18073 Rubredoxin metal binding domain Ami3637_10605 PF13520 Amino acid permease Ami3637_10610 PF00072 Response regulator receiver domain Ami3637_10610 PF00486 Transcriptional regulatory protein, C terminal Ami3637_10615 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_10615 PF00672 HAMP domain Ami3637_10615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_10620 PF02559 CarD-like/TRCF domain Ami3637_10630 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Ami3637_10630 PF02542 YgbB family Ami3637_10635 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Ami3637_10635 PF03129 Anticodon binding domain Ami3637_10635 PF04073 Aminoacyl-tRNA editing domain Ami3637_10640 PF03458 UPF0126 domain Ami3637_10645 PF13344 Haloacid dehalogenase-like hydrolase Ami3637_10645 PF00293 NUDIX domain Ami3637_10650 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Ami3637_10655 PF01551 Peptidase family M23 Ami3637_10660 PF09190 DALR domain Ami3637_10660 PF01406 tRNA synthetases class I (C) catalytic domain Ami3637_10665 PF00636 Ribonuclease III domain Ami3637_10670 PF00303 Thymidylate synthase Ami3637_10675 PF00753 Metallo-beta-lactamase superfamily Ami3637_10680 PF00186 Dihydrofolate reductase Ami3637_10685 PF00588 SpoU rRNA Methylase family Ami3637_10685 PF08032 RNA 2'-O ribose methyltransferase substrate binding Ami3637_10690 PF04542 Sigma-70 region 2 Ami3637_10690 PF08281 Sigma-70, region 4 Ami3637_10705 PF01575 MaoC like domain Ami3637_10715 PF00561 alpha/beta hydrolase fold Ami3637_10725 PF03144 Elongation factor Tu domain 2 Ami3637_10725 PF03143 Elongation factor Tu C-terminal domain Ami3637_10725 PF00009 Elongation factor Tu GTP binding domain Ami3637_10740 PF03062 MBOAT, membrane-bound O-acyltransferase family Ami3637_10765 PF00471 Ribosomal protein L33 Ami3637_10770 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Ami3637_10775 PF02357 Transcription termination factor nusG Ami3637_10775 PF00467 KOW motif Ami3637_10780 PF00298 Ribosomal protein L11, RNA binding domain Ami3637_10780 PF03946 Ribosomal protein L11, N-terminal domain Ami3637_10785 PF00687 Ribosomal protein L1p/L10e family Ami3637_10790 PF00466 Ribosomal protein L10 Ami3637_10795 PF16320 Ribosomal protein L7/L12 dimerisation domain Ami3637_10795 PF00542 Ribosomal protein L7/L12 C-terminal domain Ami3637_10810 PF00164 Ribosomal protein S12/S23 Ami3637_10815 PF00177 Ribosomal protein S7p/S5e Ami3637_10825 PF00009 Elongation factor Tu GTP binding domain Ami3637_10825 PF03144 Elongation factor Tu domain 2 Ami3637_10825 PF03143 Elongation factor Tu C-terminal domain Ami3637_10830 PF12850 Calcineurin-like phosphoesterase superfamily domain Ami3637_10845 PF04055 Radical SAM superfamily Ami3637_10845 PF06968 Biotin and Thiamin Synthesis associated domain Ami3637_10850 PF02632 BioY family Ami3637_10855 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) Ami3637_10855 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 Ami3637_10860 PF13361 UvrD-like helicase C-terminal domain Ami3637_10860 PF00580 UvrD/REP helicase N-terminal domain Ami3637_10865 PF03120 NAD-dependent DNA ligase OB-fold domain Ami3637_10865 PF12826 Helix-hairpin-helix motif Ami3637_10865 PF01653 NAD-dependent DNA ligase adenylation domain Ami3637_10865 PF00533 BRCA1 C Terminus (BRCT) domain Ami3637_10875 PF02903 Alpha amylase, N-terminal ig-like domain Ami3637_10875 PF00395 S-layer homology domain Ami3637_10875 PF00128 Alpha amylase, catalytic domain Ami3637_10895 PF12169 DNA polymerase III subunits gamma and tau domain III Ami3637_10900 PF02575 YbaB/EbfC DNA-binding family Ami3637_10905 PF13662 Toprim domain Ami3637_10905 PF02132 RecR protein Ami3637_10920 PF10371 Domain of unknown function Ami3637_10920 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Ami3637_10920 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Ami3637_10920 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Ami3637_10920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ami3637_10925 PF00005 ABC transporter Ami3637_10935 PF00529 HlyD membrane-fusion protein of T1SS Ami3637_10935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Ami3637_10950 PF00285 Citrate synthase, C-terminal domain Ami3637_10955 PF04851 Type III restriction enzyme, res subunit Ami3637_10955 PF02151 UvrB/uvrC motif Ami3637_10955 PF12344 Ultra-violet resistance protein B Ami3637_10955 PF17757 UvrB interaction domain Ami3637_10955 PF00271 Helicase conserved C-terminal domain Ami3637_10965 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Ami3637_10965 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Ami3637_10965 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain Ami3637_10985 PF01116 Fructose-bisphosphate aldolase class-II Ami3637_11005 PF01479 S4 domain Ami3637_11005 PF00849 RNA pseudouridylate synthase Ami3637_11010 PF10502 Signal peptidase, peptidase S26 Ami3637_11015 PF01668 SmpB protein Ami3637_11035 PF00589 Phage integrase family Ami3637_11035 PF02899 Phage integrase, N-terminal SAM-like domain Ami3637_11060 PF04232 Stage V sporulation protein S (SpoVS) Ami3637_11080 PF06725 3D domain Ami3637_11080 PF01476 LysM domain Ami3637_11160 PF10668 Phage terminase small subunit Ami3637_11215 PF04984 Phage tail sheath protein subtilisin-like domain Ami3637_11215 PF17481 Phage tail sheath protein beta-sandwich domain Ami3637_11215 PF17482 Phage tail sheath C-terminal domain Ami3637_11220 PF09393 Phage tail tube protein Ami3637_11255 PF04865 Baseplate J-like protein Ami3637_11315 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) Ami3637_11315 PF07581 The GLUG motif Ami3637_11330 PF03060 Nitronate monooxygenase Ami3637_11340 PF00155 Aminotransferase class I and II Ami3637_11340 PF00392 Bacterial regulatory proteins, gntR family Ami3637_11345 PF07687 Peptidase dimerisation domain Ami3637_11345 PF01546 Peptidase family M20/M25/M40 Ami3637_11350 PF04122 Putative cell wall binding repeat 2 Ami3637_11350 PF01520 N-acetylmuramoyl-L-alanine amidase Ami3637_11355 PF01047 MarR family Ami3637_11400 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) Ami3637_11400 PF07581 The GLUG motif Ami3637_11405 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) Ami3637_11405 PF07581 The GLUG motif Ami3637_11415 PF00892 EamA-like transporter family Ami3637_11420 PF01638 HxlR-like helix-turn-helix Ami3637_11455 PF01228 Glycine radical Ami3637_11455 PF02901 Pyruvate formate lyase-like Ami3637_11460 PF04055 Radical SAM superfamily Ami3637_11465 PF12833 Helix-turn-helix domain Ami3637_11465 PF10114 Sensory domain found in PocR Ami3637_11475 PF00248 Aldo/keto reductase family Ami3637_11480 PF02311 AraC-like ligand binding domain Ami3637_11480 PF12833 Helix-turn-helix domain Ami3637_11485 PF02607 B12 binding domain Ami3637_11485 PF02310 B12 binding domain Ami3637_11490 PF06253 Trimethylamine methyltransferase (MTTB) Ami3637_11495 PF06253 Trimethylamine methyltransferase (MTTB) Ami3637_11510 PF02607 B12 binding domain Ami3637_11510 PF02310 B12 binding domain Ami3637_11525 PF00175 Oxidoreductase NAD-binding domain Ami3637_11525 PF00111 2Fe-2S iron-sulfur cluster binding domain Ami3637_11525 PF00970 Oxidoreductase FAD-binding domain Ami3637_11535 PF06968 Biotin and Thiamin Synthesis associated domain Ami3637_11535 PF04055 Radical SAM superfamily Ami3637_11555 PF07683 Cobalamin synthesis protein cobW C-terminal domain Ami3637_11555 PF02492 CobW/HypB/UreG, nucleotide-binding domain Ami3637_11575 PF00672 HAMP domain Ami3637_11575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_11575 PF02203 Tar ligand binding domain homologue Ami3637_11580 PF07486 Cell Wall Hydrolase Ami3637_11580 PF01471 Putative peptidoglycan binding domain Ami3637_11595 PF05816 Toxic anion resistance protein (TelA) Ami3637_11605 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_11645 PF00350 Dynamin family Ami3637_11655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_11655 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_11655 PF08447 PAS fold Ami3637_11655 PF00989 PAS fold Ami3637_11660 PF00158 Sigma-54 interaction domain Ami3637_11660 PF00072 Response regulator receiver domain Ami3637_11660 PF02954 Bacterial regulatory protein, Fis family Ami3637_11665 PF13520 Amino acid permease Ami3637_11670 PF13520 Amino acid permease Ami3637_11675 PF00857 Isochorismatase family Ami3637_11680 PF00501 AMP-binding enzyme Ami3637_11680 PF13193 AMP-binding enzyme C-terminal domain Ami3637_11685 PF03062 MBOAT, membrane-bound O-acyltransferase family Ami3637_11690 PF00550 Phosphopantetheine attachment site Ami3637_11695 PF04914 DltD protein Ami3637_11715 PF00005 ABC transporter Ami3637_11730 PF08240 Alcohol dehydrogenase GroES-like domain Ami3637_11730 PF00107 Zinc-binding dehydrogenase Ami3637_11735 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Ami3637_11735 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Ami3637_11745 PF05025 RbsD / FucU transport protein family Ami3637_11750 PF00005 ABC transporter Ami3637_11755 PF02653 Branched-chain amino acid transport system / permease component Ami3637_11760 PF13407 Periplasmic binding protein domain Ami3637_11765 PF00132 Bacterial transferase hexapeptide (six repeats) Ami3637_11770 PF00072 Response regulator receiver domain Ami3637_11780 PF01212 Beta-eliminating lyase Ami3637_11785 PF06418 CTP synthase N-terminus Ami3637_11785 PF00117 Glutamine amidotransferase class-I Ami3637_11805 PF12116 Stage III sporulation protein D Ami3637_11815 PF00072 Response regulator receiver domain Ami3637_11815 PF00486 Transcriptional regulatory protein, C terminal Ami3637_11825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_11825 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_11825 PF00672 HAMP domain Ami3637_11835 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Ami3637_11845 PF00005 ABC transporter Ami3637_11850 PF00005 ABC transporter Ami3637_11850 PF02687 FtsX-like permease family Ami3637_11850 PF12704 MacB-like periplasmic core domain Ami3637_11855 PF02687 FtsX-like permease family Ami3637_11855 PF12704 MacB-like periplasmic core domain Ami3637_11880 PF01522 Polysaccharide deacetylase Ami3637_11880 PF00457 Glycosyl hydrolases family 11 Ami3637_11880 PF03422 Carbohydrate binding module (family 6) Ami3637_11895 PF01170 Putative RNA methylase family UPF0020 Ami3637_11895 PF02926 THUMP domain Ami3637_11900 PF00689 Cation transporting ATPase, C-terminus Ami3637_11900 PF00690 Cation transporter/ATPase, N-terminus Ami3637_11905 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Ami3637_11905 PF00117 Glutamine amidotransferase class-I Ami3637_11910 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Ami3637_11910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Ami3637_11910 PF02142 MGS-like domain Ami3637_11915 PF00072 Response regulator receiver domain Ami3637_11915 PF04397 LytTr DNA-binding domain Ami3637_11935 PF13520 Amino acid permease Ami3637_11945 PF07729 FCD domain Ami3637_11945 PF00392 Bacterial regulatory proteins, gntR family Ami3637_11950 PF01594 AI-2E family transporter Ami3637_11955 PF02901 Pyruvate formate lyase-like Ami3637_11955 PF01228 Glycine radical Ami3637_11960 PF04055 Radical SAM superfamily Ami3637_11985 PF02223 Thymidylate kinase Ami3637_11995 PF09115 DNA polymerase III, delta subunit, C terminal Ami3637_12005 PF05175 Methyltransferase small domain Ami3637_12025 PF18277 AbrB C-terminal domain Ami3637_12025 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin Ami3637_12035 PF01790 Prolipoprotein diacylglyceryl transferase Ami3637_12040 PF06071 Protein of unknown function (DUF933) Ami3637_12040 PF01926 50S ribosome-binding GTPase Ami3637_12045 PF01791 DeoC/LacD family aldolase Ami3637_12050 PF00899 ThiF family Ami3637_12055 PF02219 Methylenetetrahydrofolate reductase Ami3637_12065 PF02381 MraZ protein, putative antitoxin-like Ami3637_12080 PF00905 Penicillin binding protein transpeptidase domain Ami3637_12080 PF05223 NTF2-like N-terminal transpeptidase domain Ami3637_12080 PF03717 Penicillin-binding Protein dimerisation domain Ami3637_12090 PF03793 PASTA domain Ami3637_12090 PF03717 Penicillin-binding Protein dimerisation domain Ami3637_12090 PF00905 Penicillin binding protein transpeptidase domain Ami3637_12095 PF08245 Mur ligase middle domain Ami3637_12095 PF01225 Mur ligase family, catalytic domain Ami3637_12095 PF02875 Mur ligase family, glutamate ligase domain Ami3637_12100 PF01225 Mur ligase family, catalytic domain Ami3637_12100 PF02875 Mur ligase family, glutamate ligase domain Ami3637_12100 PF08245 Mur ligase middle domain Ami3637_12105 PF02875 Mur ligase family, glutamate ligase domain Ami3637_12105 PF08245 Mur ligase middle domain Ami3637_12105 PF01225 Mur ligase family, catalytic domain Ami3637_12110 PF00953 Glycosyl transferase family 4 Ami3637_12120 PF01098 Cell cycle protein Ami3637_12125 PF03033 Glycosyltransferase family 28 N-terminal domain Ami3637_12125 PF04101 Glycosyltransferase family 28 C-terminal domain Ami3637_12130 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Ami3637_12150 PF06947 Protein of unknown function (DUF1290) Ami3637_12155 PF12327 FtsZ family, C-terminal domain Ami3637_12155 PF00091 Tubulin/FtsZ family, GTPase domain Ami3637_12160 PF00588 SpoU rRNA Methylase family Ami3637_12160 PF08032 RNA 2'-O ribose methyltransferase substrate binding Ami3637_12165 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Ami3637_12165 PF01409 tRNA synthetases class II core domain (F) Ami3637_12170 PF03147 Ferredoxin-fold anticodon binding domain Ami3637_12170 PF01588 Putative tRNA binding domain Ami3637_12170 PF03483 B3/4 domain Ami3637_12170 PF03484 tRNA synthetase B5 domain Ami3637_12170 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Ami3637_12175 PF05164 Cell division protein ZapA Ami3637_12190 PF00750 tRNA synthetases class I (R) Ami3637_12190 PF05746 DALR anticodon binding domain Ami3637_12190 PF03485 Arginyl tRNA synthetase N terminal domain Ami3637_12255 PF02384 N-6 DNA Methylase Ami3637_12255 PF12161 HsdM N-terminal domain Ami3637_12260 PF01420 Type I restriction modification DNA specificity domain Ami3637_12265 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) Ami3637_12265 PF18766 SWI2/SNF2 ATPase Ami3637_12265 PF12008 Type I restriction and modification enzyme - subunit R C terminal Ami3637_12285 PF09588 YqaJ-like viral recombinase domain Ami3637_12295 PF04002 RadC-like JAB domain Ami3637_12395 PF01139 tRNA-splicing ligase RtcB Ami3637_12400 PF10127 RNA repair pathway DNA polymerase beta family Ami3637_12405 PF01327 Polypeptide deformylase Ami3637_12410 PF10417 C-terminal domain of 1-Cys peroxiredoxin Ami3637_12410 PF00578 AhpC/TSA family Ami3637_12415 PF01370 NAD dependent epimerase/dehydratase family Ami3637_12420 PF16363 GDP-mannose 4,6 dehydratase Ami3637_12425 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Ami3637_12425 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Ami3637_12425 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Ami3637_12450 PF13426 PAS domain Ami3637_12450 PF00563 EAL domain Ami3637_12450 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_12460 PF00672 HAMP domain Ami3637_12460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_12460 PF02203 Tar ligand binding domain homologue Ami3637_12465 PF01546 Peptidase family M20/M25/M40 Ami3637_12465 PF07687 Peptidase dimerisation domain Ami3637_12515 PF16326 ABC transporter C-terminal domain Ami3637_12515 PF12848 ABC transporter Ami3637_12515 PF00005 ABC transporter Ami3637_12530 PF00324 Amino acid permease Ami3637_12535 PF03030 Inorganic H+ pyrophosphatase Ami3637_12540 PF00936 BMC domain Ami3637_12545 PF10662 Ethanolamine utilisation - propanediol utilisation Ami3637_12550 PF03606 C4-dicarboxylate anaerobic carrier Ami3637_12560 PF14579 Helix-hairpin-helix motif Ami3637_12560 PF01336 OB-fold nucleic acid binding domain Ami3637_12560 PF07733 Bacterial DNA polymerase III alpha NTPase domain Ami3637_12560 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Ami3637_12560 PF02811 PHP domain Ami3637_12565 PF00365 Phosphofructokinase Ami3637_12570 PF17874 MalT-like TPR region Ami3637_12570 PF00196 Bacterial regulatory proteins, luxR family Ami3637_12575 PF01502 Phosphoribosyl-AMP cyclohydrolase Ami3637_12575 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Ami3637_12580 PF00977 Histidine biosynthesis protein Ami3637_12585 PF00977 Histidine biosynthesis protein Ami3637_12590 PF00117 Glutamine amidotransferase class-I Ami3637_12595 PF00475 Imidazoleglycerol-phosphate dehydratase Ami3637_12600 PF00155 Aminotransferase class I and II Ami3637_12605 PF00815 Histidinol dehydrogenase Ami3637_12610 PF01634 ATP phosphoribosyltransferase Ami3637_12615 PF13393 Histidyl-tRNA synthetase Ami3637_12625 PF00392 Bacterial regulatory proteins, gntR family Ami3637_12625 PF07729 FCD domain Ami3637_12630 PF18324 Hypothetical protein TT1725 Ami3637_12630 PF00180 Isocitrate/isopropylmalate dehydrogenase Ami3637_12635 PF00330 Aconitase family (aconitate hydratase) Ami3637_12640 PF00730 HhH-GPD superfamily base excision DNA repair protein Ami3637_12640 PF10576 Iron-sulfur binding domain of endonuclease III Ami3637_12640 PF00633 Helix-hairpin-helix motif Ami3637_12650 PF00873 AcrB/AcrD/AcrF family Ami3637_12655 PF00873 AcrB/AcrD/AcrF family Ami3637_12660 PF16295 Tetracyclin repressor-like, C-terminal domain Ami3637_12660 PF00440 Bacterial regulatory proteins, tetR family Ami3637_12665 PF07517 SecA DEAD-like domain Ami3637_12665 PF01043 SecA preprotein cross-linking domain Ami3637_12665 PF07516 SecA Wing and Scaffold domain Ami3637_12665 PF02810 SEC-C motif Ami3637_12670 PF00742 Homoserine dehydrogenase Ami3637_12670 PF03447 Homoserine dehydrogenase, NAD binding domain Ami3637_12670 PF01842 ACT domain Ami3637_12675 PF00588 SpoU rRNA Methylase family Ami3637_12680 PF04552 Sigma-54, DNA binding domain Ami3637_12680 PF04963 Sigma-54 factor, core binding domain Ami3637_12680 PF00309 Sigma-54 factor, Activator interacting domain (AID) Ami3637_12685 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Ami3637_12685 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Ami3637_12695 PF00121 Triosephosphate isomerase Ami3637_12700 PF00113 Enolase, C-terminal TIM barrel domain Ami3637_12700 PF03952 Enolase, N-terminal domain Ami3637_12705 PF03840 Preprotein translocase SecG subunit Ami3637_12725 PF01680 SOR/SNZ family Ami3637_12730 PF01174 SNO glutamine amidotransferase family Ami3637_12735 PF07690 Major Facilitator Superfamily Ami3637_12740 PF01063 Amino-transferase class IV Ami3637_12760 PF08206 Ribonuclease B OB domain Ami3637_12760 PF17876 Cold shock domain Ami3637_12760 PF00575 S1 RNA binding domain Ami3637_12760 PF00773 RNB domain Ami3637_12765 PF00571 CBS domain Ami3637_12770 PF02386 Cation transport protein Ami3637_12775 PF02386 Cation transport protein Ami3637_12780 PF00999 Sodium/hydrogen exchanger family Ami3637_12780 PF02080 TrkA-C domain Ami3637_12780 PF02254 TrkA-N domain Ami3637_12785 PF00753 Metallo-beta-lactamase superfamily Ami3637_12800 PF02021 Uncharacterised protein family UPF0102 Ami3637_12810 PF18255 DNA processing protein A sterile alpha motif domain Ami3637_12810 PF02481 DNA recombination-mediator protein A Ami3637_12815 PF01396 Topoisomerase DNA binding C4 zinc finger Ami3637_12815 PF01131 DNA topoisomerase Ami3637_12815 PF01751 Toprim domain Ami3637_12820 PF00227 Proteasome subunit Ami3637_12825 PF10431 C-terminal, D2-small domain, of ClpB protein Ami3637_12825 PF00004 ATPase family associated with various cellular activities (AAA) Ami3637_12825 PF07724 AAA domain (Cdc48 subfamily) Ami3637_12830 PF06018 CodY GAF-like domain Ami3637_12830 PF08222 CodY helix-turn-helix domain Ami3637_12840 PF13167 GTP-binding GTPase N-terminal Ami3637_12840 PF16360 GTP-binding GTPase Middle Region Ami3637_12840 PF01926 50S ribosome-binding GTPase Ami3637_12845 PF09186 Domain of unknown function (DUF1949) Ami3637_12845 PF01205 Uncharacterized protein family UPF0029 Ami3637_12990 PF00265 Thymidine kinase Ami3637_12995 PF16199 Radical_SAM C-terminal domain Ami3637_12995 PF04055 Radical SAM superfamily Ami3637_13005 PF04851 Type III restriction enzyme, res subunit Ami3637_13005 PF00271 Helicase conserved C-terminal domain Ami3637_13005 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Ami3637_13005 PF17764 3′ DNA-binding domain (3′BD) Ami3637_13005 PF18074 Primosomal protein N C-terminal domain Ami3637_13010 PF00271 Helicase conserved C-terminal domain Ami3637_13010 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Ami3637_13010 PF18074 Primosomal protein N C-terminal domain Ami3637_13010 PF04851 Type III restriction enzyme, res subunit Ami3637_13010 PF17764 3′ DNA-binding domain (3′BD) Ami3637_13015 PF01327 Polypeptide deformylase Ami3637_13025 PF04298 Putative neutral zinc metallopeptidase Ami3637_13030 PF01029 NusB family Ami3637_13030 PF01189 16S rRNA methyltransferase RsmB/F Ami3637_13040 PF00069 Protein kinase domain Ami3637_13040 PF03793 PASTA domain Ami3637_13045 PF00069 Protein kinase domain Ami3637_13045 PF03793 PASTA domain Ami3637_13050 PF03193 RsgA GTPase Ami3637_13050 PF16745 RsgA N-terminal domain Ami3637_13055 PF00834 Ribulose-phosphate 3 epimerase family Ami3637_13060 PF00936 BMC domain Ami3637_13065 PF00005 ABC transporter Ami3637_13065 PF12848 ABC transporter Ami3637_13140 PF00155 Aminotransferase class I and II Ami3637_13140 PF00392 Bacterial regulatory proteins, gntR family Ami3637_13150 PF07687 Peptidase dimerisation domain Ami3637_13150 PF01546 Peptidase family M20/M25/M40 Ami3637_13155 PF01276 Orn/Lys/Arg decarboxylase, major domain Ami3637_13155 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain Ami3637_13165 PF00005 ABC transporter Ami3637_13170 PF00392 Bacterial regulatory proteins, gntR family Ami3637_13175 PF03590 Aspartate-ammonia ligase Ami3637_13180 PF08239 Bacterial SH3 domain Ami3637_13180 PF01520 N-acetylmuramoyl-L-alanine amidase Ami3637_13185 PF01343 Peptidase family S49 Ami3637_13190 PF04297 Putative helix-turn-helix protein, YlxM / p13 like Ami3637_13195 PF02978 Signal peptide binding domain Ami3637_13195 PF02881 SRP54-type protein, helical bundle domain Ami3637_13195 PF00448 SRP54-type protein, GTPase domain Ami3637_13200 PF00886 Ribosomal protein S16 Ami3637_13210 PF05239 PRC-barrel domain Ami3637_13210 PF01782 RimM N-terminal domain Ami3637_13215 PF01746 tRNA (Guanine-1)-methyltransferase Ami3637_13225 PF01168 Alanine racemase, N-terminal domain Ami3637_13230 PF04472 Cell division protein SepF Ami3637_13240 PF05103 DivIVA protein Ami3637_13245 PF01252 Signal peptidase (SPase) II Ami3637_13250 PF00849 RNA pseudouridylate synthase Ami3637_13250 PF01479 S4 domain Ami3637_13265 PF05670 NFACT protein RNA binding domain Ami3637_13270 PF03755 YicC-like family, N-terminal region Ami3637_13270 PF08340 Domain of unknown function (DUF1732) Ami3637_13275 PF00625 Guanylate kinase Ami3637_13280 PF01192 RNA polymerase Rpb6 Ami3637_13290 PF00318 Ribosomal protein S2 Ami3637_13295 PF00889 Elongation factor TS Ami3637_13305 PF01966 HD domain Ami3637_13310 PF00696 Amino acid kinase family Ami3637_13315 PF01765 Ribosome recycling factor Ami3637_13320 PF01255 Putative undecaprenyl diphosphate synthase Ami3637_13330 PF13288 DXP reductoisomerase C-terminal domain Ami3637_13330 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Ami3637_13330 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Ami3637_13335 PF02163 Peptidase family M50 Ami3637_13335 PF17820 PDZ domain Ami3637_13340 PF04551 GcpE protein Ami3637_13350 PF14579 Helix-hairpin-helix motif Ami3637_13350 PF02811 PHP domain Ami3637_13350 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Ami3637_13350 PF07733 Bacterial DNA polymerase III alpha NTPase domain Ami3637_13350 PF00929 Exonuclease Ami3637_13350 PF11490 DNA polymerase III polC-type N-terminus II Ami3637_13355 PF14535 AMP-binding enzyme C-terminal domain Ami3637_13355 PF00501 AMP-binding enzyme Ami3637_13365 PF00501 AMP-binding enzyme Ami3637_13365 PF14535 AMP-binding enzyme C-terminal domain Ami3637_13375 PF17384 RimP C-terminal SH3 domain Ami3637_13375 PF02576 RimP N-terminal domain Ami3637_13380 PF08529 NusA N-terminal domain Ami3637_13380 PF13184 NusA-like KH domain Ami3637_13380 PF00575 S1 RNA binding domain Ami3637_13395 PF00009 Elongation factor Tu GTP binding domain Ami3637_13395 PF11987 Translation-initiation factor 2 Ami3637_13395 PF04760 Translation initiation factor IF-2, N-terminal region Ami3637_13400 PF02033 Ribosome-binding factor A Ami3637_13405 PF02272 DHHA1 domain Ami3637_13405 PF01368 DHH family Ami3637_13415 PF16198 tRNA pseudouridylate synthase B C-terminal domain Ami3637_13415 PF01509 TruB family pseudouridylate synthase (N terminal domain) Ami3637_13420 PF01687 Riboflavin kinase Ami3637_13420 PF06574 FAD synthetase Ami3637_13425 PF00563 EAL domain Ami3637_13425 PF03707 Bacterial signalling protein N terminal repeat Ami3637_13425 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_13430 PF00312 Ribosomal protein S15 Ami3637_13440 PF00672 HAMP domain Ami3637_13440 PF00909 Ammonium Transporter Family Ami3637_13445 PF00072 Response regulator receiver domain Ami3637_13445 PF00196 Bacterial regulatory proteins, luxR family Ami3637_13450 PF00909 Ammonium Transporter Family Ami3637_13465 PF00884 Sulfatase Ami3637_13480 PF00465 Iron-containing alcohol dehydrogenase Ami3637_13490 PF01872 RibD C-terminal domain Ami3637_13490 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Ami3637_13495 PF00677 Lumazine binding domain Ami3637_13500 PF00925 GTP cyclohydrolase II Ami3637_13500 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Ami3637_13505 PF00885 6,7-dimethyl-8-ribityllumazine synthase Ami3637_13515 PF03600 Citrate transporter Ami3637_13540 PF01177 Asp/Glu/Hydantoin racemase Ami3637_13545 PF01225 Mur ligase family, catalytic domain Ami3637_13545 PF08245 Mur ligase middle domain Ami3637_13545 PF02875 Mur ligase family, glutamate ligase domain Ami3637_13550 PF03600 Citrate transporter Ami3637_13560 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Ami3637_13560 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Ami3637_13565 PF01820 D-ala D-ala ligase N-terminus Ami3637_13565 PF07478 D-ala D-ala ligase C-terminus Ami3637_13570 PF01427 D-ala-D-ala dipeptidase Ami3637_13575 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Ami3637_13575 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Ami3637_13580 PF00324 Amino acid permease Ami3637_13585 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Ami3637_13585 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Ami3637_13590 PF00696 Amino acid kinase family Ami3637_13595 PF01235 Sodium:alanine symporter family Ami3637_13600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_13610 PF00324 Amino acid permease Ami3637_13660 PF01520 N-acetylmuramoyl-L-alanine amidase Ami3637_13670 PF03956 Lysine exporter LysO Ami3637_13675 PF10431 C-terminal, D2-small domain, of ClpB protein Ami3637_13675 PF06689 ClpX C4-type zinc finger Ami3637_13675 PF07724 AAA domain (Cdc48 subfamily) Ami3637_13685 PF00717 Peptidase S24-like Ami3637_13685 PF01726 LexA DNA binding domain Ami3637_13690 PF00707 Translation initiation factor IF-3, C-terminal domain Ami3637_13690 PF05198 Translation initiation factor IF-3, N-terminal domain Ami3637_13695 PF01632 Ribosomal protein L35 Ami3637_13700 PF00453 Ribosomal protein L20 Ami3637_13710 PF04542 Sigma-70 region 2 Ami3637_13710 PF04545 Sigma-70, region 4 Ami3637_13735 PF02686 Glu-tRNAGln amidotransferase C subunit Ami3637_13745 PF02934 GatB/GatE catalytic domain Ami3637_13745 PF02637 GatB domain Ami3637_13750 PF02938 GAD domain Ami3637_13750 PF00152 tRNA synthetases class II (D, K and N) Ami3637_13750 PF01336 OB-fold nucleic acid binding domain Ami3637_13765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Ami3637_13765 PF05698 Bacterial trigger factor protein (TF) C-terminus Ami3637_13765 PF05697 Bacterial trigger factor protein (TF) Ami3637_13770 PF05239 PRC-barrel domain Ami3637_13775 PF03477 ATP cone domain Ami3637_13780 PF02224 Cytidylate kinase Ami3637_13805 PF00324 Amino acid permease Ami3637_13810 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_13810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_13815 PF00072 Response regulator receiver domain Ami3637_13815 PF08769 Sporulation initiation factor Spo0A C terminal Ami3637_13820 PF00072 Response regulator receiver domain Ami3637_13820 PF00158 Sigma-54 interaction domain Ami3637_13820 PF02954 Bacterial regulatory protein, Fis family Ami3637_13830 PF00005 ABC transporter Ami3637_13845 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_13845 PF17152 Periplasmic sensor domain Ami3637_13865 PF07508 Recombinase Ami3637_13865 PF00239 Resolvase, N terminal domain Ami3637_13865 PF13408 Recombinase zinc beta ribbon domain Ami3637_13875 PF04545 Sigma-70, region 4 Ami3637_13875 PF04542 Sigma-70 region 2 Ami3637_13885 PF04002 RadC-like JAB domain Ami3637_13910 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Ami3637_13915 PF01098 Cell cycle protein Ami3637_13920 PF01966 HD domain Ami3637_13920 PF00013 KH domain Ami3637_13920 PF12072 Domain of unknown function (DUF3552) Ami3637_13925 PF01554 MatE Ami3637_13930 PF00266 Aminotransferase class-V Ami3637_13935 PF02568 Thiamine biosynthesis protein (ThiI) Ami3637_13935 PF02926 THUMP domain Ami3637_13940 PF01740 STAS domain Ami3637_13945 PF13581 Histidine kinase-like ATPase domain Ami3637_13950 PF04545 Sigma-70, region 4 Ami3637_13950 PF04539 Sigma-70 region 3 Ami3637_13950 PF04542 Sigma-70 region 2 Ami3637_13955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Ami3637_13955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Ami3637_13955 PF02770 Acyl-CoA dehydrogenase, middle domain Ami3637_13960 PF01012 Electron transfer flavoprotein domain Ami3637_13965 PF13237 4Fe-4S dicluster domain Ami3637_13965 PF01012 Electron transfer flavoprotein domain Ami3637_13965 PF00766 Electron transfer flavoprotein FAD-binding domain Ami3637_13975 PF02545 Maf-like protein Ami3637_13980 PF03862 SpoVAC/SpoVAEB sporulation membrane protein Ami3637_13985 PF07451 Stage V sporulation protein AD (SpoVAD) Ami3637_14015 PF00912 Transglycosylase Ami3637_14015 PF00905 Penicillin binding protein transpeptidase domain Ami3637_14030 PF13567 Domain of unknown function (DUF4131) Ami3637_14030 PF03772 Competence protein Ami3637_14030 PF00753 Metallo-beta-lactamase superfamily Ami3637_14060 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami3637_14060 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Ami3637_14060 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Ami3637_14075 PF01810 LysE type translocator Ami3637_14085 PF04434 SWIM zinc finger Ami3637_14085 PF00176 SNF2 family N-terminal domain Ami3637_14085 PF00271 Helicase conserved C-terminal domain Ami3637_14090 PF04434 SWIM zinc finger Ami3637_14090 PF00176 SNF2 family N-terminal domain Ami3637_14090 PF00271 Helicase conserved C-terminal domain Ami3637_14100 PF01145 SPFH domain / Band 7 family Ami3637_14105 PF02743 Cache domain Ami3637_14105 PF00672 HAMP domain Ami3637_14105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_14110 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Ami3637_14110 PF00391 PEP-utilising enzyme, mobile domain Ami3637_14115 PF00440 Bacterial regulatory proteins, tetR family Ami3637_14115 PF16925 Tetracyclin repressor-like, C-terminal domain Ami3637_14120 PF00378 Enoyl-CoA hydratase/isomerase Ami3637_14130 PF02646 RmuC family Ami3637_14140 PF01676 Metalloenzyme superfamily Ami3637_14145 PF00591 Glycosyl transferase family, a/b domain Ami3637_14145 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Ami3637_14145 PF02885 Glycosyl transferase family, helical bundle domain Ami3637_14160 PF16123 Hydroxyacylglutathione hydrolase C-terminus Ami3637_14160 PF00753 Metallo-beta-lactamase superfamily Ami3637_14180 PF02702 Osmosensitive K+ channel His kinase sensor domain Ami3637_14180 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_14180 PF13493 Domain of unknown function (DUF4118) Ami3637_14180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_14185 PF00072 Response regulator receiver domain Ami3637_14185 PF00486 Transcriptional regulatory protein, C terminal Ami3637_14195 PF02254 TrkA-N domain Ami3637_14195 PF02080 TrkA-C domain Ami3637_14205 PF07943 Penicillin-binding protein 5, C-terminal domain Ami3637_14205 PF00768 D-alanyl-D-alanine carboxypeptidase Ami3637_14215 PF17746 SfsA N-terminal OB domain Ami3637_14215 PF03749 Sugar fermentation stimulation protein RE domain Ami3637_14275 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Ami3637_14285 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Ami3637_14285 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Ami3637_14290 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ami3637_14310 PF03466 LysR substrate binding domain Ami3637_14310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami3637_14325 PF02673 Bacitracin resistance protein BacA Ami3637_14330 PF01381 Helix-turn-helix Ami3637_14340 PF00905 Penicillin binding protein transpeptidase domain Ami3637_14340 PF05569 BlaR1 peptidase M56 Ami3637_14345 PF01327 Polypeptide deformylase Ami3637_14360 PF02110 Hydroxyethylthiazole kinase family Ami3637_14370 PF13419 Haloacid dehalogenase-like hydrolase Ami3637_14375 PF02581 Thiamine monophosphate synthase Ami3637_14375 PF08543 Phosphomethylpyrimidine kinase Ami3637_14380 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase Ami3637_14380 PF04101 Glycosyltransferase family 28 C-terminal domain Ami3637_14395 PF01048 Phosphorylase superfamily Ami3637_14405 PF00501 AMP-binding enzyme Ami3637_14405 PF13193 AMP-binding enzyme C-terminal domain Ami3637_14425 PF02675 S-adenosylmethionine decarboxylase Ami3637_14430 PF03063 Prismane/CO dehydrogenase family Ami3637_14435 PF03063 Prismane/CO dehydrogenase family Ami3637_14445 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Ami3637_14445 PF04324 BFD-like [2Fe-2S] binding domain Ami3637_14445 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Ami3637_14445 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami3637_14445 PF18267 Rubredoxin NAD+ reductase C-terminal domain Ami3637_14450 PF03006 Haemolysin-III related Ami3637_14455 PF08448 PAS fold Ami3637_14455 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_14465 PF04260 Protein of unknown function (DUF436) Ami3637_14475 PF00392 Bacterial regulatory proteins, gntR family Ami3637_14475 PF00155 Aminotransferase class I and II Ami3637_14485 PF00072 Response regulator receiver domain Ami3637_14485 PF01966 HD domain Ami3637_14490 PF00005 ABC transporter Ami3637_14510 PF13411 MerR HTH family regulatory protein Ami3637_14510 PF06445 GyrI-like small molecule binding domain Ami3637_14515 PF18389 TrmO C-terminal domain Ami3637_14515 PF01980 tRNA-methyltransferase O Ami3637_14525 PF05067 Manganese containing catalase Ami3637_14530 PF00269 Small, acid-soluble spore proteins, alpha/beta type Ami3637_14535 PF01325 Iron dependent repressor, N-terminal DNA binding domain Ami3637_14535 PF02742 Iron dependent repressor, metal binding and dimerisation domain Ami3637_14545 PF07664 Ferrous iron transport protein B C terminus Ami3637_14545 PF17910 FeoB cytosolic helical domain Ami3637_14545 PF02421 Ferrous iron transport protein B Ami3637_14545 PF07670 Nucleoside recognition Ami3637_14550 PF00269 Small, acid-soluble spore proteins, alpha/beta type Ami3637_14565 PF02203 Tar ligand binding domain homologue Ami3637_14565 PF00672 HAMP domain Ami3637_14565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_14570 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Ami3637_14570 PF00391 PEP-utilising enzyme, mobile domain Ami3637_14590 PF01381 Helix-turn-helix Ami3637_14600 PF13520 Amino acid permease Ami3637_14640 PF05593 RHS Repeat Ami3637_14670 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family Ami3637_14725 PF05593 RHS Repeat Ami3637_14755 PF17853 GGDEF-like domain Ami3637_14755 PF07905 Purine catabolism regulatory protein-like family Ami3637_14755 PF13556 PucR C-terminal helix-turn-helix domain Ami3637_14760 PF02423 Ornithine cyclodeaminase/mu-crystallin family Ami3637_14765 PF00155 Aminotransferase class I and II Ami3637_14770 PF17853 GGDEF-like domain Ami3637_14770 PF06018 CodY GAF-like domain Ami3637_14770 PF13556 PucR C-terminal helix-turn-helix domain Ami3637_14775 PF00155 Aminotransferase class I and II Ami3637_14830 PF13538 UvrD-like helicase C-terminal domain Ami3637_14865 PF13087 AAA domain Ami3637_14865 PF13091 PLD-like domain Ami3637_14910 PF04073 Aminoacyl-tRNA editing domain Ami3637_14915 PF13302 Acetyltransferase (GNAT) domain Ami3637_14915 PF00117 Glutamine amidotransferase class-I Ami3637_14915 PF03352 Methyladenine glycosylase Ami3637_14915 PF13673 Acetyltransferase (GNAT) domain Ami3637_14915 PF00958 GMP synthase C terminal domain Ami3637_14930 PF00583 Acetyltransferase (GNAT) family Ami3637_14945 PF00149 Calcineurin-like phosphoesterase Ami3637_14975 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Ami3637_14975 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Ami3637_14975 PF13187 4Fe-4S dicluster domain Ami3637_14980 PF00175 Oxidoreductase NAD-binding domain Ami3637_14980 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B Ami3637_14985 PF17179 4Fe-4S dicluster domain Ami3637_14995 PF03352 Methyladenine glycosylase Ami3637_14995 PF00958 GMP synthase C terminal domain Ami3637_14995 PF13302 Acetyltransferase (GNAT) domain Ami3637_14995 PF00117 Glutamine amidotransferase class-I Ami3637_14995 PF13673 Acetyltransferase (GNAT) domain Ami3637_15055 PF00999 Sodium/hydrogen exchanger family Ami3637_15085 PF13520 Amino acid permease Ami3637_15090 PF07943 Penicillin-binding protein 5, C-terminal domain Ami3637_15090 PF00768 D-alanyl-D-alanine carboxypeptidase Ami3637_15095 PF04542 Sigma-70 region 2 Ami3637_15095 PF08281 Sigma-70, region 4 Ami3637_15100 PF11738 Protein of unknown function (DUF3298) Ami3637_15100 PF13739 Deacetylase PdaC Ami3637_15110 PF00893 Small Multidrug Resistance protein Ami3637_15130 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_15135 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_15140 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_15165 PF03459 TOBE domain Ami3637_15165 PF00005 ABC transporter Ami3637_15165 PF17912 MalK OB fold domain Ami3637_15195 PF04199 Putative cyclase Ami3637_15205 PF06968 Biotin and Thiamin Synthesis associated domain Ami3637_15205 PF04055 Radical SAM superfamily Ami3637_15220 PF00528 Binding-protein-dependent transport system inner membrane component Ami3637_15225 PF00005 ABC transporter Ami3637_15235 PF02492 CobW/HypB/UreG, nucleotide-binding domain Ami3637_15240 PF01638 HxlR-like helix-turn-helix Ami3637_15250 PF04060 Putative Fe-S cluster Ami3637_15260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_15260 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_15260 PF00672 HAMP domain Ami3637_15265 PF00072 Response regulator receiver domain Ami3637_15265 PF00486 Transcriptional regulatory protein, C terminal Ami3637_15280 PF12837 4Fe-4S binding domain Ami3637_15280 PF12801 4Fe-4S binding domain Ami3637_15295 PF03466 LysR substrate binding domain Ami3637_15295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami3637_15305 PF01522 Polysaccharide deacetylase Ami3637_15305 PF11738 Protein of unknown function (DUF3298) Ami3637_15305 PF13739 Deacetylase PdaC Ami3637_15310 PF14268 YoaP-like Ami3637_15310 PF00583 Acetyltransferase (GNAT) family Ami3637_15315 PF00578 AhpC/TSA family Ami3637_15320 PF00072 Response regulator receiver domain Ami3637_15320 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_15325 PF11208 Protein of unknown function (DUF2992) Ami3637_15350 PF00149 Calcineurin-like phosphoesterase Ami3637_15350 PF12320 Type 5 capsule protein repressor C-terminal domain Ami3637_15355 PF13476 AAA domain Ami3637_15365 PF00082 Subtilase family Ami3637_15370 PF01966 HD domain Ami3637_15370 PF00072 Response regulator receiver domain Ami3637_15385 PF00009 Elongation factor Tu GTP binding domain Ami3637_15385 PF03144 Elongation factor Tu domain 2 Ami3637_15385 PF16658 Class II release factor RF3, C-terminal domain Ami3637_15400 PF12671 Putative amidase domain Ami3637_15410 PF02661 Fic/DOC family Ami3637_15420 PF02127 Aminopeptidase I zinc metalloprotease (M18) Ami3637_15425 PF00557 Metallopeptidase family M24 Ami3637_15425 PF01321 Creatinase/Prolidase N-terminal domain Ami3637_15435 PF00877 NlpC/P60 family Ami3637_15445 PF00877 NlpC/P60 family Ami3637_15445 PF01476 LysM domain Ami3637_15445 PF08239 Bacterial SH3 domain Ami3637_15450 PF01464 Transglycosylase SLT domain Ami3637_15455 PF02535 ZIP Zinc transporter Ami3637_15465 PF04954 Siderophore-interacting protein Ami3637_15465 PF00005 ABC transporter Ami3637_15465 PF00664 ABC transporter transmembrane region Ami3637_15465 PF08021 Siderophore-interacting FAD-binding domain Ami3637_15470 PF00005 ABC transporter Ami3637_15470 PF00664 ABC transporter transmembrane region Ami3637_15475 PF02673 Bacitracin resistance protein BacA Ami3637_15485 PF17874 MalT-like TPR region Ami3637_15485 PF00196 Bacterial regulatory proteins, luxR family Ami3637_15500 PF04371 Porphyromonas-type peptidyl-arginine deiminase Ami3637_15510 PF00155 Aminotransferase class I and II Ami3637_15525 PF12729 Four helix bundle sensory module for signal transduction Ami3637_15525 PF00672 HAMP domain Ami3637_15525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_15535 PF18630 Peptidase M60 C-terminal domain Ami3637_15535 PF08126 Propeptide_C25 Ami3637_15535 PF01364 Peptidase family C25 Ami3637_15535 PF03785 Peptidase family C25, C terminal ig-like domain Ami3637_15540 PF00324 Amino acid permease Ami3637_15545 PF00989 PAS fold Ami3637_15545 PF00512 His Kinase A (phospho-acceptor) domain Ami3637_15545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Ami3637_15545 PF08447 PAS fold Ami3637_15550 PF00072 Response regulator receiver domain Ami3637_15550 PF00158 Sigma-54 interaction domain Ami3637_15550 PF02954 Bacterial regulatory protein, Fis family Ami3637_15560 PF00672 HAMP domain Ami3637_15560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_15560 PF12729 Four helix bundle sensory module for signal transduction Ami3637_15575 PF01554 MatE Ami3637_15605 PF02899 Phage integrase, N-terminal SAM-like domain Ami3637_15605 PF00589 Phage integrase family Ami3637_15625 PF00561 alpha/beta hydrolase fold Ami3637_15645 PF03358 NADPH-dependent FMN reductase Ami3637_15650 PF00753 Metallo-beta-lactamase superfamily Ami3637_15675 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_15680 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_15680 PF07694 5TMR of 5TMR-LYT Ami3637_15685 PF00072 Response regulator receiver domain Ami3637_15690 PF03073 TspO/MBR family Ami3637_15725 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family Ami3637_15730 PF00148 Nitrogenase component 1 type Oxidoreductase Ami3637_15730 PF08369 Proto-chlorophyllide reductase 57 kD subunit Ami3637_15750 PF13635 Domain of unknown function (DUF4143) Ami3637_15750 PF13173 AAA domain Ami3637_15765 PF03062 MBOAT, membrane-bound O-acyltransferase family Ami3637_15775 PF06452 Carbohydrate family 9 binding domain-like Ami3637_15775 PF00331 Glycosyl hydrolase family 10 Ami3637_15775 PF02018 Carbohydrate binding domain Ami3637_15775 PF00395 S-layer homology domain Ami3637_15785 PF00675 Insulinase (Peptidase family M16) Ami3637_15785 PF05193 Peptidase M16 inactive domain Ami3637_15795 PF11761 Cobalamin biosynthesis central region Ami3637_15795 PF01890 Cobalamin synthesis G C-terminus Ami3637_15795 PF11760 Cobalamin synthesis G N-terminal Ami3637_15800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Ami3637_15805 PF07685 CobB/CobQ-like glutamine amidotransferase domain Ami3637_15805 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Ami3637_15810 PF01888 CbiD Ami3637_15815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Ami3637_15820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Ami3637_15820 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Ami3637_15830 PF00155 Aminotransferase class I and II Ami3637_15835 PF07685 CobB/CobQ-like glutamine amidotransferase domain Ami3637_15840 PF02570 Precorrin-8X methylmutase Ami3637_15860 PF01384 Phosphate transporter family Ami3637_15865 PF13286 Phosphohydrolase-associated domain Ami3637_15865 PF01966 HD domain Ami3637_15870 PF01807 CHC2 zinc finger Ami3637_15870 PF10410 DnaB-helicase binding domain of primase Ami3637_15870 PF08275 DNA primase catalytic core, N-terminal domain Ami3637_15875 PF08278 DNA primase DnaG DnaB-binding Ami3637_15875 PF01807 CHC2 zinc finger Ami3637_15875 PF08275 DNA primase catalytic core, N-terminal domain Ami3637_15875 PF10410 DnaB-helicase binding domain of primase Ami3637_15880 PF10410 DnaB-helicase binding domain of primase Ami3637_15880 PF08275 DNA primase catalytic core, N-terminal domain Ami3637_15880 PF01807 CHC2 zinc finger Ami3637_15885 PF04545 Sigma-70, region 4 Ami3637_15885 PF04539 Sigma-70 region 3 Ami3637_15885 PF04542 Sigma-70 region 2 Ami3637_15885 PF03979 Sigma-70 factor, region 1.1 Ami3637_15885 PF00140 Sigma-70 factor, region 1.2 Ami3637_15890 PF04816 tRNA (adenine(22)-N(1))-methyltransferase Ami3637_15895 PF01784 NIF3 (NGG1p interacting factor 3) Ami3637_15910 PF01554 MatE Ami3637_15925 PF01709 Transcriptional regulator Ami3637_15940 PF01226 Formate/nitrite transporter Ami3637_15955 PF03576 Peptidase family S58 Ami3637_15960 PF01061 ABC-2 type transporter Ami3637_15965 PF00571 CBS domain Ami3637_15965 PF03471 Transporter associated domain Ami3637_15965 PF01595 Cyclin M transmembrane N-terminal domain Ami3637_15970 PF02811 PHP domain Ami3637_15975 PF04542 Sigma-70 region 2 Ami3637_15975 PF08281 Sigma-70, region 4 Ami3637_15985 PF00476 DNA polymerase family A Ami3637_15985 PF01367 5'-3' exonuclease, C-terminal SAM fold Ami3637_15985 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Ami3637_15990 PF01121 Dephospho-CoA kinase Ami3637_16010 PF02699 Preprotein translocase subunit Ami3637_16020 PF02355 Protein export membrane protein Ami3637_16020 PF07549 SecD/SecF GG Motif Ami3637_16025 PF04607 Region found in RelA / SpoT proteins Ami3637_16025 PF13291 ACT domain Ami3637_16025 PF02824 TGS domain Ami3637_16030 PF02580 D-Tyr-tRNA(Tyr) deacylase Ami3637_16035 PF00753 Metallo-beta-lactamase superfamily Ami3637_16040 PF04055 Radical SAM superfamily Ami3637_16045 PF13393 Histidyl-tRNA synthetase Ami3637_16045 PF03129 Anticodon binding domain Ami3637_16050 PF02938 GAD domain Ami3637_16050 PF00152 tRNA synthetases class II (D, K and N) Ami3637_16050 PF01336 OB-fold nucleic acid binding domain Ami3637_16055 PF01467 Cytidylyltransferase-like Ami3637_16060 PF01966 HD domain Ami3637_16070 PF00133 tRNA synthetases class I (I, L, M and V) Ami3637_16070 PF13603 Leucyl-tRNA synthetase, Domain 2 Ami3637_16070 PF09334 tRNA synthetases class I (M) Ami3637_16070 PF08264 Anticodon-binding domain of tRNA Ami3637_16075 PF17770 Ribonuclease J C-terminal domain Ami3637_16075 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Ami3637_16075 PF00753 Metallo-beta-lactamase superfamily Ami3637_16080 PF06133 Control of competence regulator ComK, YlbF/YmcA Ami3637_16085 PF09285 Elongation factor P, C-terminal Ami3637_16085 PF01132 Elongation factor P (EF-P) OB domain Ami3637_16085 PF08207 Elongation factor P (EF-P) KOW-like domain Ami3637_16090 PF02618 YceG-like family Ami3637_16095 PF01596 O-methyltransferase Ami3637_16105 PF03471 Transporter associated domain Ami3637_16105 PF00571 CBS domain Ami3637_16105 PF01595 Cyclin M transmembrane N-terminal domain Ami3637_16130 PF06686 Stage III sporulation protein AC/AD protein family Ami3637_16135 PF00248 Aldo/keto reductase family Ami3637_16145 PF06135 IreB regulatory phosphoprotein Ami3637_16150 PF03652 Holliday junction resolvase Ami3637_16165 PF13411 MerR HTH family regulatory protein Ami3637_16175 PF00248 Aldo/keto reductase family Ami3637_16180 PF01042 Endoribonuclease L-PSP Ami3637_16190 PF02525 Flavodoxin-like fold Ami3637_16210 PF02915 Rubrerythrin Ami3637_16215 PF09924 Uncharacterised conserved protein (DUF2156) Ami3637_16215 PF03706 Lysylphosphatidylglycerol synthase TM region Ami3637_16220 PF03706 Lysylphosphatidylglycerol synthase TM region Ami3637_16220 PF09924 Uncharacterised conserved protein (DUF2156) Ami3637_16225 PF03706 Lysylphosphatidylglycerol synthase TM region Ami3637_16225 PF09924 Uncharacterised conserved protein (DUF2156) Ami3637_16240 PF00578 AhpC/TSA family Ami3637_16250 PF12801 4Fe-4S binding domain Ami3637_16250 PF04205 FMN-binding domain Ami3637_16255 PF14693 Ribosomal protein TL5, C-terminal domain Ami3637_16255 PF01386 Ribosomal L25p family Ami3637_16275 PF01476 LysM domain Ami3637_16280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Ami3637_16285 PF09335 SNARE associated Golgi protein Ami3637_16290 PF06838 Methionine gamma-lyase Ami3637_16295 PF02899 Phage integrase, N-terminal SAM-like domain Ami3637_16295 PF00589 Phage integrase family Ami3637_16305 PF01119 DNA mismatch repair protein, C-terminal domain Ami3637_16305 PF08676 MutL C terminal dimerisation domain Ami3637_16310 PF05190 MutS family domain IV Ami3637_16310 PF00488 MutS domain V Ami3637_16310 PF01624 MutS domain I Ami3637_16310 PF05188 MutS domain II Ami3637_16310 PF05192 MutS domain III Ami3637_16315 PF00155 Aminotransferase class I and II Ami3637_16330 PF00348 Polyprenyl synthetase Ami3637_16340 PF13742 OB-fold nucleic acid binding domain Ami3637_16340 PF02601 Exonuclease VII, large subunit Ami3637_16345 PF00814 Glycoprotease family Ami3637_16350 PF01029 NusB family Ami3637_16355 PF03780 Asp23 family, cell envelope-related function Ami3637_16380 PF01592 NifU-like N terminal domain Ami3637_16385 PF00266 Aminotransferase class-V Ami3637_16395 PF05979 Bacterial protein of unknown function (DUF896) Ami3637_16400 PF00239 Resolvase, N terminal domain Ami3637_16400 PF18010 Cry35Ab1 HTH C-terminal domain Ami3637_16405 PF00202 Aminotransferase class-III Ami3637_16410 PF08769 Sporulation initiation factor Spo0A C terminal Ami3637_16410 PF00072 Response regulator receiver domain Ami3637_16415 PF05580 SpoIVB peptidase S55 Ami3637_16415 PF17820 PDZ domain Ami3637_16425 PF10531 SLBB domain Ami3637_16435 PF04055 Radical SAM superfamily Ami3637_16435 PF06969 HemN C-terminal domain Ami3637_16455 PF09269 Domain of unknown function (DUF1967) Ami3637_16455 PF01926 50S ribosome-binding GTPase Ami3637_16455 PF01018 GTP1/OBG Ami3637_16460 PF01016 Ribosomal L27 protein Ami3637_16465 PF00829 Ribosomal prokaryotic L21 protein Ami3637_16470 PF00154 recA bacterial DNA recombination protein Ami3637_16480 PF01066 CDP-alcohol phosphatidyltransferase Ami3637_16485 PF04055 Radical SAM superfamily Ami3637_16485 PF18693 TRAM domain Ami3637_16485 PF00919 Uncharacterized protein family UPF0004 Ami3637_16560 PF01476 LysM domain Ami3637_16635 PF00589 Phage integrase family Ami3637_16640 PF00589 Phage integrase family Ami3637_16640 PF02899 Phage integrase, N-terminal SAM-like domain Ami3637_16705 PF00436 Single-strand binding protein family Ami3637_16715 PF13614 AAA domain Ami3637_16765 PF02796 Helix-turn-helix domain of resolvase Ami3637_16765 PF00239 Resolvase, N terminal domain Ami3637_16780 PF00701 Dihydrodipicolinate synthetase family Ami3637_16785 PF01783 Ribosomal L32p protein family Ami3637_16790 PF00871 Acetokinase family Ami3637_16795 PF05636 HIGH Nucleotidyl Transferase Ami3637_16810 PF01467 Cytidylyltransferase-like Ami3637_16820 PF00269 Small, acid-soluble spore proteins, alpha/beta type Ami3637_16825 PF00270 DEAD/DEAH box helicase Ami3637_16825 PF00271 Helicase conserved C-terminal domain Ami3637_16825 PF17191 RecG wedge domain Ami3637_16835 PF00830 Ribosomal L28 family Ami3637_16840 PF04055 Radical SAM superfamily Ami3637_16845 PF03477 ATP cone domain Ami3637_16845 PF13597 Anaerobic ribonucleoside-triphosphate reductase Ami3637_16865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Ami3637_16865 PF03466 LysR substrate binding domain Ami3637_16870 PF03601 Conserved hypothetical protein 698 Ami3637_16880 PF02203 Tar ligand binding domain homologue Ami3637_16880 PF00672 HAMP domain Ami3637_16880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_16885 PF02203 Tar ligand binding domain homologue Ami3637_16885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_16885 PF00672 HAMP domain Ami3637_16890 PF00672 HAMP domain Ami3637_16890 PF17202 Single cache domain 3 Ami3637_16890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Ami3637_16895 PF17932 Tetracyclin repressor-like, C-terminal domain Ami3637_16895 PF00440 Bacterial regulatory proteins, tetR family Ami3637_16900 PF00730 HhH-GPD superfamily base excision DNA repair protein Ami3637_16900 PF14815 NUDIX domain Ami3637_16910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Ami3637_16910 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg Ami3637_16910 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase Ami3637_16910 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II Ami3637_16910 PF12838 4Fe-4S dicluster domain Ami3637_16910 PF10371 Domain of unknown function Ami3637_16920 PF00994 Probable molybdopterin binding domain Ami3637_16925 PF06463 Molybdenum Cofactor Synthesis C Ami3637_16925 PF04055 Radical SAM superfamily Ami3637_16930 PF00990 Diguanylate cyclase, GGDEF domain Ami3637_16930 PF08448 PAS fold Ami3637_16965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Ami3637_16965 PF07992 Pyridine nucleotide-disulphide oxidoreductase Ami3637_16980 PF04012 PspA/IM30 family Ami3637_16985 PF00395 S-layer homology domain