locus-tag	class	description
Ami3637_00025	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
Ami3637_00035	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ami3637_00035	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ami3637_00065	COG3290	protein histidine kinase activity
Ami3637_00065	COG3829	transcription factor binding
Ami3637_00080	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
Ami3637_00085	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
Ami3637_00090	COG1959	2 iron, 2 sulfur cluster binding
Ami3637_00115	COG1733	regulation of RNA biosynthetic process
Ami3637_00160	COG0531	amino acid
Ami3637_00185	COG0583	DNA-binding transcription factor activity
Ami3637_00200	COG0531	amino acid
Ami3637_00205	COG1012	belongs to the aldehyde dehydrogenase family
Ami3637_00210	COG0789	Transcriptional regulator
Ami3637_00230	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ami3637_00255	COG3279	Response regulator of the LytR AlgR family
Ami3637_00260	COG0693	protein deglycase activity
Ami3637_00275	COG0095	Lipoate-protein ligase
Ami3637_00280	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Ami3637_00290	COG1846	Transcriptional regulator
Ami3637_00400	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Ami3637_00410	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
Ami3637_00415	COG2385	sporulation resulting in formation of a cellular spore
Ami3637_00430	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
Ami3637_00435	COG1438	arginine binding
Ami3637_00440	COG0497	DNA recombination
Ami3637_00455	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
Ami3637_00460	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
Ami3637_00460	COG0539	negative regulation of cytoplasmic translation
Ami3637_00465	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
Ami3637_00520	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
Ami3637_00520	COG4651	solute:proton antiporter activity
Ami3637_00525	COG5002	protein histidine kinase activity
Ami3637_00530	COG0745	RESPONSE REGULATOR receiver
Ami3637_00535	COG1283	sodium-dependent phosphate transmembrane transporter activity
Ami3637_00545	COG0740	serine-type endopeptidase activity
Ami3637_00555	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
Ami3637_00555	COG0574	Belongs to the PEP-utilizing enzyme family
Ami3637_00565	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Ami3637_00575	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
Ami3637_00580	COG0295	cytidine deaminase activity
Ami3637_00590	COG1702	phosphate starvation-inducible protein PhoH
Ami3637_00595	COG0561	phosphatase activity
Ami3637_00610	COG1959	2 iron, 2 sulfur cluster binding
Ami3637_00620	COG0828	Belongs to the bacterial ribosomal protein bS21 family
Ami3637_00625	COG0537	adenosine 5'-monophosphoramidase activity
Ami3637_00630	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Ami3637_00640	COG0726	polysaccharide deacetylase
Ami3637_00640	COG1649	PFAM Uncharacterised BCR, COG1649
Ami3637_00650	COG2033	superoxide reductase activity
Ami3637_00655	COG1385	rRNA (uridine-N3-)-methyltransferase activity
Ami3637_00660	COG2264	protein methyltransferase activity
Ami3637_00665	COG4978	Transcriptional regulator
Ami3637_00665	COG0789	Transcriptional regulator
Ami3637_00670	COG2211	Major facilitator Superfamily
Ami3637_00675	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
Ami3637_00680	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
Ami3637_00700	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
Ami3637_00720	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
Ami3637_00725	COG1254	Belongs to the acylphosphatase family
Ami3637_00755	COG3260	NADH ubiquinone oxidoreductase 20
Ami3637_00765	COG2111	Na H antiporter
Ami3637_00765	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
Ami3637_00775	COG0444	Belongs to the ABC transporter superfamily
Ami3637_00780	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
Ami3637_00785	COG0601	transmembrane transport
Ami3637_00810	COG1937	Protein conserved in bacteria
Ami3637_00845	COG4302	ethanolamine ammonia-lyase activity
Ami3637_00855	COG3920	Histidine kinase
Ami3637_00860	COG2197	response regulator
Ami3637_00885	COG4869	propanediol catabolic process
Ami3637_00890	COG1012	belongs to the aldehyde dehydrogenase family
Ami3637_00890	COG1454	alcohol dehydrogenase
Ami3637_00905	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
Ami3637_00910	COG4656	Part of a membrane complex involved in electron transport
Ami3637_00925	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
Ami3637_00935	COG4816	utilization protein
Ami3637_00955	COG1250	3-hydroxyacyl-CoA dehydrogenase
Ami3637_00965	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
Ami3637_00965	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
Ami3637_00970	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
Ami3637_00975	COG1418	mRNA catabolic process
Ami3637_00990	COG0443	Heat shock 70 kDa protein
Ami3637_01020	COG0559	Belongs to the binding-protein-dependent transport system permease family
Ami3637_01045	COG1115	amino acid carrier protein
Ami3637_01080	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Ami3637_01100	COG0481	GTPase activity
Ami3637_01115	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
Ami3637_01120	COG0268	Binds directly to 16S ribosomal RNA
Ami3637_01125	COG1917	Cupin 2, conserved barrel domain protein
Ami3637_01125	COG2207	Transcriptional regulator
Ami3637_01140	COG2235	arginine
Ami3637_01145	COG3835	regulator
Ami3637_01160	COG3949	Membrane
Ami3637_01165	COG2962	Rard protein
Ami3637_01170	COG1757	Na H antiporter
Ami3637_01185	COG1164	Oligoendopeptidase f
Ami3637_01190	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
Ami3637_01195	COG0564	pseudouridine synthase activity
Ami3637_01200	COG0840	transmembrane signaling receptor activity
Ami3637_01225	COG0514	ATP-dependent DNA helicase (RecQ)
Ami3637_01265	COG0583	DNA-binding transcription factor activity
Ami3637_01280	COG1695	Transcriptional regulator
Ami3637_01305	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
Ami3637_01330	COG1733	regulation of RNA biosynthetic process
Ami3637_01355	COG2949	membrane
Ami3637_01365	COG0617	tRNA 3'-terminal CCA addition
Ami3637_01375	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
Ami3637_01380	COG2189	Belongs to the N(4) N(6)-methyltransferase family
Ami3637_01395	COG1079	Belongs to the binding-protein-dependent transport system permease family
Ami3637_01405	COG3845	ABC transporter
Ami3637_01410	COG1744	ABC transporter substrate-binding protein PnrA-like
Ami3637_01415	COG2340	Cysteine-rich secretory protein family
Ami3637_01420	COG0494	nUDIX hydrolase
Ami3637_01425	COG0697	spore germination
Ami3637_01440	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
Ami3637_01465	COG4496	protein, YerC YecD
Ami3637_01470	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
Ami3637_01500	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
Ami3637_01510	COG4869	propanediol catabolic process
Ami3637_01520	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
Ami3637_01555	COG2207	Transcriptional regulator
Ami3637_01565	COG0793	Belongs to the peptidase S41A family
Ami3637_01570	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
Ami3637_01570	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
Ami3637_01575	COG0739	heme binding
Ami3637_01580	COG2177	Part of the ABC transporter FtsEX involved in
Ami3637_01585	COG2884	Cell division ATP-binding protein ftsE
Ami3637_01605	COG3958	Transketolase
Ami3637_01610	COG3959	Transketolase, thiamine diphosphate binding domain
Ami3637_01635	COG2337	Toxic component of a toxin-antitoxin (TA) module
Ami3637_01640	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
Ami3637_01640	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
Ami3637_01645	COG2239	Acts as a magnesium transporter
Ami3637_01665	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
Ami3637_01670	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
Ami3637_01675	COG0668	transmembrane transport
Ami3637_01685	COG1397	ADP-ribosylglycohydrolase
Ami3637_01690	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Ami3637_01695	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Ami3637_01705	COG1177	transmembrane transport
Ami3637_01710	COG1176	ABC-type spermidine putrescine transport system, permease component I
Ami3637_01720	COG2204	response regulator
Ami3637_01725	COG0531	amino acid
Ami3637_01730	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
Ami3637_01735	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
Ami3637_01780	COG0438	transferase activity, transferring glycosyl groups
Ami3637_01825	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
Ami3637_01855	COG1361	Conserved repeat domain
Ami3637_01875	COG1217	gtp-binding protein TYPA
Ami3637_01900	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Ami3637_01905	COG3830	Belongs to the UPF0237 family
Ami3637_01910	COG2848	UPF0210 protein
Ami3637_01930	COG3246	L-lysine catabolic process to acetate
Ami3637_01935	COG1660	Displays ATPase and GTPase activities
Ami3637_01945	COG0812	UDP-N-acetylmuramate dehydrogenase activity
Ami3637_01960	COG1285	pathogenesis
Ami3637_01975	COG3437	response regulator, receiver
Ami3637_01985	COG3437	response regulator, receiver
Ami3637_01985	COG4999	Histidine kinase
Ami3637_01985	COG3850	Histidine kinase
Ami3637_01985	COG2205	protein histidine kinase activity
Ami3637_02070	COG1192	Involved in chromosome partitioning
Ami3637_02140	COG0426	domain, Protein
Ami3637_02145	COG1960	acyl-CoA dehydrogenase activity
Ami3637_02185	COG2323	membrane
Ami3637_02195	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
Ami3637_02200	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
Ami3637_02205	COG0776	regulation of translation
Ami3637_02210	COG3956	TIGRFAM MazG family protein
Ami3637_02215	COG2244	polysaccharide biosynthetic process
Ami3637_02220	COG0402	S-adenosylhomocysteine deaminase activity
Ami3637_02225	COG2002	toxin-antitoxin pair type II binding
Ami3637_02230	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
Ami3637_02235	COG0193	aminoacyl-tRNA hydrolase activity
Ami3637_02245	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
Ami3637_02250	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
Ami3637_02255	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
Ami3637_02260	COG2088	sporulation resulting in formation of a cellular spore
Ami3637_02265	COG0492	ferredoxin-NADP+ reductase activity
Ami3637_02280	COG0741	lytic transglycosylase activity
Ami3637_02295	COG0768	penicillin binding
Ami3637_02305	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
Ami3637_02310	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
Ami3637_02320	COG1595	DNA-templated transcription, initiation
Ami3637_02330	COG0450	alkyl hydroperoxide reductase
Ami3637_02350	COG0167	dihydroorotate dehydrogenase activity
Ami3637_02355	COG0543	2 iron, 2 sulfur cluster binding
Ami3637_02360	COG0284	orotidine-5'-phosphate decarboxylase activity
Ami3637_02380	COG0019	diaminopimelate decarboxylase activity
Ami3637_02450	COG4187	Peptidase family M20/M25/M40
Ami3637_02470	COG1074	ATP-dependent DNA helicase activity
Ami3637_02475	COG1074	ATP-dependent DNA helicase activity
Ami3637_02535	COG2195	Cleaves the N-terminal amino acid of tripeptides
Ami3637_02555	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
Ami3637_02560	COG2081	HI0933 family
Ami3637_02565	COG1408	metallophosphoesterase
Ami3637_02585	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
Ami3637_02590	COG0513	Belongs to the DEAD box helicase family
Ami3637_02605	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
Ami3637_02615	COG1108	ABC-type Mn2 Zn2 transport systems permease components
Ami3637_02625	COG0803	Belongs to the bacterial solute-binding protein 9 family
Ami3637_02655	COG1994	Peptidase M50
Ami3637_02660	COG0791	NLP P60 protein
Ami3637_02660	COG1388	LysM domain
Ami3637_02665	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Ami3637_02710	COG0010	Belongs to the arginase family
Ami3637_02715	COG0640	Transcriptional regulator
Ami3637_02720	COG0701	Predicted permease
Ami3637_02745	COG0475	glutathione-regulated potassium exporter activity
Ami3637_02760	COG0189	ligase activity
Ami3637_02795	COG3426	butyrate kinase activity
Ami3637_02800	COG0280	phosphate acetyltransferase
Ami3637_02815	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Ami3637_02850	COG3778	Protein conserved in bacteria
Ami3637_02855	COG3299	homolog of phage Mu protein gp47
Ami3637_02980	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
Ami3637_02985	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
Ami3637_02990	COG1160	GTP binding
Ami3637_02995	COG0552	protein localization to endoplasmic reticulum
Ami3637_03000	COG1196	nuclear chromosome segregation
Ami3637_03040	COG1574	metal-dependent hydrolase with the TIM-barrel fold
Ami3637_03050	COG0833	amino acid
Ami3637_03060	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
Ami3637_03065	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
Ami3637_03070	COG1686	Belongs to the peptidase S11 family
Ami3637_03090	COG1473	amidohydrolase
Ami3637_03110	COG2715	membrane protein required for spore maturation
Ami3637_03115	COG0700	Nucleoside recognition
Ami3637_03120	COG1619	proteins homologs of microcin C7 resistance protein MccF
Ami3637_03135	COG0765	amino acid transport
Ami3637_03140	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Ami3637_03150	COG0726	polysaccharide deacetylase
Ami3637_03165	COG1597	lipid kinase activity
Ami3637_03175	COG0285	dihydrofolate synthase activity
Ami3637_03180	COG0525	valine-tRNA ligase activity
Ami3637_03205	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
Ami3637_03205	COG1648	precorrin-2 dehydrogenase activity
Ami3637_03210	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
Ami3637_03230	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
Ami3637_03235	COG0113	porphobilinogen synthase activity
Ami3637_03240	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
Ami3637_03245	COG3404	Formiminotransferase-cyclodeaminase
Ami3637_03250	COG2759	Belongs to the formate--tetrahydrofolate ligase family
Ami3637_03255	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
Ami3637_03265	COG0335	large ribosomal subunit rRNA binding
Ami3637_03270	COG4974	Belongs to the 'phage' integrase family
Ami3637_03280	COG0494	nUDIX hydrolase
Ami3637_03285	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
Ami3637_03290	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
Ami3637_03305	COG0375	protein maturation
Ami3637_03320	COG0488	(ABC) transporter
Ami3637_03330	COG2359	stage V sporulation protein S
Ami3637_03345	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
Ami3637_03385	COG4869	propanediol catabolic process
Ami3637_03390	COG1454	alcohol dehydrogenase
Ami3637_03390	COG1012	belongs to the aldehyde dehydrogenase family
Ami3637_03405	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
Ami3637_03410	COG4656	Part of a membrane complex involved in electron transport
Ami3637_03415	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
Ami3637_03440	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Ami3637_03445	COG1882	Formate acetyltransferase
Ami3637_03450	COG1012	belongs to the aldehyde dehydrogenase family
Ami3637_03450	COG1454	alcohol dehydrogenase
Ami3637_03455	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
Ami3637_03480	COG4978	Transcriptional regulator
Ami3637_03480	COG0789	Transcriptional regulator
Ami3637_03495	COG3708	Transcriptional regulator
Ami3637_03495	COG2207	Transcriptional regulator
Ami3637_03500	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
Ami3637_03505	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
Ami3637_03535	COG0583	DNA-binding transcription factor activity
Ami3637_03540	COG1132	(ABC) transporter
Ami3637_03545	COG1132	(ABC) transporter
Ami3637_03560	COG0436	Aminotransferase
Ami3637_03610	COG0084	hydrolase, TatD family'
Ami3637_03615	COG1116	anion transmembrane transporter activity
Ami3637_03625	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Ami3637_03630	COG1804	L-carnitine dehydratase bile acid-inducible protein F
Ami3637_03635	COG0288	reversible hydration of carbon dioxide
Ami3637_03645	COG1177	transmembrane transport
Ami3637_03650	COG1176	ABC-type spermidine putrescine transport system, permease component I
Ami3637_03655	COG3842	ATPase activity
Ami3637_03690	COG1595	DNA-templated transcription, initiation
Ami3637_03700	COG0697	spore germination
Ami3637_03720	COG1151	hydroxylamine reductase activity
Ami3637_03765	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
Ami3637_03775	COG0598	Magnesium transport protein CorA
Ami3637_03795	COG0745	RESPONSE REGULATOR receiver
Ami3637_03795	COG2972	Histidine kinase
Ami3637_03805	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Ami3637_03830	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
Ami3637_03835	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
Ami3637_03840	COG1116	anion transmembrane transporter activity
Ami3637_03870	COG3620	sequence-specific DNA binding
Ami3637_03885	COG3850	Histidine kinase
Ami3637_03885	COG5002	protein histidine kinase activity
Ami3637_03890	COG0745	RESPONSE REGULATOR receiver
Ami3637_03910	COG3706	GGDEF domain
Ami3637_03915	COG0071	Belongs to the small heat shock protein (HSP20) family
Ami3637_03920	COG0412	Dienelactone hydrolase
Ami3637_03940	COG1595	DNA-templated transcription, initiation
Ami3637_03955	COG0745	RESPONSE REGULATOR receiver
Ami3637_03970	COG2217	Heavy metal translocating P-type atpase
Ami3637_03975	COG2608	mercury ion transmembrane transporter activity
Ami3637_03995	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Ami3637_04000	COG1113	amino acid transport
Ami3637_04010	COG0833	amino acid
Ami3637_04025	COG0789	Transcriptional regulator
Ami3637_04045	COG0840	transmembrane signaling receptor activity
Ami3637_04060	COG1595	DNA-templated transcription, initiation
Ami3637_04080	COG0105	UTP biosynthetic process
Ami3637_04085	COG1691	(AIR) carboxylase
Ami3637_04125	COG0531	amino acid
Ami3637_04130	COG1113	amino acid transport
Ami3637_04150	COG1360	Flagellar Motor Protein
Ami3637_04155	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
Ami3637_04175	COG0789	Transcriptional regulator
Ami3637_04195	COG1733	regulation of RNA biosynthetic process
Ami3637_04230	COG1846	Transcriptional regulator
Ami3637_04280	COG0840	transmembrane signaling receptor activity
Ami3637_04285	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Ami3637_04285	COG2199	diguanylate cyclase activity
Ami3637_04290	COG0488	(ABC) transporter
Ami3637_04300	COG0655	NAD(P)H dehydrogenase (quinone) activity
Ami3637_04325	COG1595	DNA-templated transcription, initiation
Ami3637_04345	COG5002	protein histidine kinase activity
Ami3637_04345	COG0642	Histidine kinase
Ami3637_04350	COG0745	RESPONSE REGULATOR receiver
Ami3637_04360	COG0745	RESPONSE REGULATOR receiver
Ami3637_04365	COG2205	protein histidine kinase activity
Ami3637_04380	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ami3637_04385	COG2364	Membrane
Ami3637_04430	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
Ami3637_04435	COG0824	Thioesterase
Ami3637_04455	COG3655	Transcriptional regulator
Ami3637_04505	COG0708	Exodeoxyribonuclease III
Ami3637_04535	COG2203	Gaf domain
Ami3637_04535	COG2199	diguanylate cyclase activity
Ami3637_04550	COG0583	DNA-binding transcription factor activity
Ami3637_04555	COG0697	spore germination
Ami3637_04605	COG3546	catalase activity
Ami3637_04660	COG0438	transferase activity, transferring glycosyl groups
Ami3637_04695	COG2873	o-acetylhomoserine
Ami3637_04705	COG3855	fructose 1,6-bisphosphate 1-phosphatase activity
Ami3637_04710	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
Ami3637_04710	COG0551	DNA topoisomerase type I activity
Ami3637_04720	COG1388	LysM domain
Ami3637_04720	COG3858	chitin binding
Ami3637_04725	COG3266	domain, Protein
Ami3637_04725	COG2911	Protein conserved in bacteria
Ami3637_04725	COG1361	Conserved repeat domain
Ami3637_04740	COG3647	Membrane
Ami3637_04765	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Ami3637_04785	COG2508	Transcriptional regulator
Ami3637_04795	COG3266	domain, Protein
Ami3637_04795	COG2911	Protein conserved in bacteria
Ami3637_04795	COG1361	Conserved repeat domain
Ami3637_04800	COG2234	aminopeptidase activity
Ami3637_04810	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
Ami3637_04815	COG0726	polysaccharide deacetylase
Ami3637_04815	COG1649	PFAM Uncharacterised BCR, COG1649
Ami3637_04820	COG0745	RESPONSE REGULATOR receiver
Ami3637_04825	COG5002	protein histidine kinase activity
Ami3637_04835	COG1131	(ABC) transporter
Ami3637_04845	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
Ami3637_04860	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
Ami3637_04885	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
Ami3637_04895	COG5001	Diguanylate cyclase
Ami3637_04895	COG2203	Gaf domain
Ami3637_04895	COG3706	GGDEF domain
Ami3637_04895	COG4251	negative regulation of phosphorylation
Ami3637_04905	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Ami3637_04960	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
Ami3637_04975	COG2385	sporulation resulting in formation of a cellular spore
Ami3637_04980	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
Ami3637_05025	COG3764	Sortase (surface protein transpeptidase)
Ami3637_05040	COG4869	propanediol catabolic process
Ami3637_05045	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
Ami3637_05055	COG0218	Necessary for normal cell division and for the maintenance of normal septation
Ami3637_05060	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
Ami3637_05065	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
Ami3637_05075	COG0544	peptidyl-prolyl cis-trans isomerase activity
Ami3637_05080	COG3025	triphosphatase activity
Ami3637_05110	COG3279	Response regulator of the LytR AlgR family
Ami3637_05120	COG1404	Belongs to the peptidase S8 family
Ami3637_05145	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
Ami3637_05155	COG0484	heat shock protein binding
Ami3637_05170	COG1827	regulation of RNA biosynthetic process
Ami3637_05175	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
Ami3637_05180	COG0493	'glutamate synthase
Ami3637_05195	COG1245	4Fe-4S binding domain
Ami3637_05195	COG2878	Part of a membrane complex involved in electron transport
Ami3637_05205	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
Ami3637_05215	COG1288	antiporter activity
Ami3637_05220	COG3653	N-Acyl-D-aspartate D-glutamate deacylase
Ami3637_05255	COG0220	tRNA (guanine-N7-)-methyltransferase activity
Ami3637_05265	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
Ami3637_05280	COG0203	ribosomal protein L17
Ami3637_05290	COG0202	RNA polymerase activity
Ami3637_05295	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
Ami3637_05300	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
Ami3637_05305	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
Ami3637_05310	COG0257	Belongs to the bacterial ribosomal protein bL36 family
Ami3637_05315	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
Ami3637_05325	COG0563	adenylate kinase activity
Ami3637_05330	COG0201	protein transport
Ami3637_05335	COG0200	Binds to the 23S rRNA
Ami3637_05340	COG1841	ribosomal large subunit assembly
Ami3637_05345	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
Ami3637_05350	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
Ami3637_05355	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
Ami3637_05360	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
Ami3637_05365	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
Ami3637_05370	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
Ami3637_05375	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
Ami3637_05380	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
Ami3637_05385	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
Ami3637_05390	COG0255	Belongs to the universal ribosomal protein uL29 family
Ami3637_05395	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
Ami3637_05400	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
Ami3637_05405	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
Ami3637_05410	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
Ami3637_05420	COG0089	rRNA binding
Ami3637_05425	COG0088	Forms part of the polypeptide exit tunnel
Ami3637_05435	COG0051	transcription antitermination factor activity, RNA binding
Ami3637_05440	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
Ami3637_05450	COG2155	Conserved Protein
Ami3637_05460	COG0613	PHP domain protein
Ami3637_05465	COG0587	DNA-directed DNA polymerase activity
Ami3637_05470	COG0693	protein deglycase activity
Ami3637_05480	COG1079	Belongs to the binding-protein-dependent transport system permease family
Ami3637_05490	COG3845	ABC transporter
Ami3637_05520	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
Ami3637_05540	COG3437	response regulator, receiver
Ami3637_05550	COG1776	CheC inhibitor of MCP methylation
Ami3637_05560	COG4786	Flagellar basal body rod
Ami3637_05565	COG4786	Flagellar basal body rod
Ami3637_05580	COG1815	bacterial-type flagellum-dependent cell motility
Ami3637_05585	COG1361	Conserved repeat domain
Ami3637_05585	COG2911	Protein conserved in bacteria
Ami3637_05585	COG3266	domain, Protein
Ami3637_05590	COG0643	Histidine kinase
Ami3637_05590	COG2198	Histidine kinase
Ami3637_05600	COG2201	protein-glutamate methylesterase activity
Ami3637_05620	COG1256	bacterial-type flagellum assembly
Ami3637_05620	COG4786	Flagellar basal body rod
Ami3637_05655	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
Ami3637_05675	COG1216	Glycosyl transferase, family 2
Ami3637_05680	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
Ami3637_05685	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
Ami3637_05690	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
Ami3637_05695	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
Ami3637_05710	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Ami3637_05715	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
Ami3637_05730	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
Ami3637_05750	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
Ami3637_05765	COG1338	Plays a role in the flagellum-specific transport system
Ami3637_05765	COG3190	flagellar
Ami3637_05775	COG2201	protein-glutamate methylesterase activity
Ami3637_05780	COG1776	CheC inhibitor of MCP methylation
Ami3637_05780	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Ami3637_05790	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Ami3637_05800	COG4786	Flagellar basal body rod
Ami3637_05810	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
Ami3637_05825	COG1157	protein secretion by the type III secretion system
Ami3637_05835	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
Ami3637_05840	COG1766	The M ring may be actively involved in energy transduction
Ami3637_05850	COG1558	bacterial-type flagellum-dependent cell motility
Ami3637_05865	COG3906	Belongs to the UPF0473 family
Ami3637_05870	COG0322	excinuclease ABC activity
Ami3637_05875	COG1686	Belongs to the peptidase S11 family
Ami3637_05880	COG3635	2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity
Ami3637_05890	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
Ami3637_05905	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
Ami3637_05910	COG1971	Probably functions as a manganese efflux pump
Ami3637_05920	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
Ami3637_05985	COG1803	Methylglyoxal synthase
Ami3637_05995	COG0726	polysaccharide deacetylase
Ami3637_06005	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
Ami3637_06020	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
Ami3637_06045	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Ami3637_06055	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
Ami3637_06070	COG1040	competence protein
Ami3637_06075	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
Ami3637_06095	COG5002	protein histidine kinase activity
Ami3637_06110	COG0577	efflux transmembrane transporter activity
Ami3637_06120	COG1136	(ABC) transporter
Ami3637_06135	COG0698	ribose 5-phosphate isomerase
Ami3637_06140	COG0009	L-threonylcarbamoyladenylate synthase
Ami3637_06150	COG0254	rRNA binding
Ami3637_06155	COG2807	transmembrane transport
Ami3637_06160	COG2890	protein-(glutamine-N5) methyltransferase activity
Ami3637_06165	COG3872	metal-dependent enzyme
Ami3637_06170	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
Ami3637_06185	COG1250	3-hydroxyacyl-CoA dehydrogenase
Ami3637_06190	COG0166	Belongs to the GPI family
Ami3637_06225	COG2801	Transposase and inactivated derivatives
Ami3637_06230	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
Ami3637_06260	COG0463	Glycosyl transferase, family 2
Ami3637_06305	COG0110	maltose O-acetyltransferase activity
Ami3637_06320	COG1216	Glycosyl transferase, family 2
Ami3637_06340	COG1088	dTDP-glucose 4,6-dehydratase activity
Ami3637_06350	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
Ami3637_06355	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
Ami3637_06355	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
Ami3637_06360	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
Ami3637_06365	COG0438	transferase activity, transferring glycosyl groups
Ami3637_06385	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
Ami3637_06390	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Ami3637_06405	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Ami3637_06410	COG1028	Short-chain dehydrogenase reductase Sdr
Ami3637_06425	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
Ami3637_06435	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
Ami3637_06445	COG1086	Polysaccharide biosynthesis protein
Ami3637_06450	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
Ami3637_06475	COG0728	peptidoglycan biosynthetic process
Ami3637_06480	COG3693	PFAM glycoside hydrolase, family 10
Ami3637_06505	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
Ami3637_06515	COG3693	PFAM glycoside hydrolase, family 10
Ami3637_06520	COG0038	chloride channel
Ami3637_06530	COG1122	ATPase activity
Ami3637_06555	COG0793	Belongs to the peptidase S41A family
Ami3637_06555	COG3409	Peptidoglycan-binding domain 1 protein
Ami3637_06570	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
Ami3637_06575	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
Ami3637_06580	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
Ami3637_06595	COG1776	CheC inhibitor of MCP methylation
Ami3637_06600	COG1802	Transcriptional regulator
Ami3637_06605	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
Ami3637_06610	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
Ami3637_06625	COG0446	pyridine nucleotide-disulphide oxidoreductase
Ami3637_06650	COG2059	Chromate
Ami3637_06685	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Ami3637_06720	COG1522	sequence-specific DNA binding
Ami3637_06770	COG1136	(ABC) transporter
Ami3637_06770	COG0577	efflux transmembrane transporter activity
Ami3637_06795	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
Ami3637_06810	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
Ami3637_06820	COG1114	Component of the transport system for branched-chain amino acids
Ami3637_06835	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Ami3637_06840	COG1882	Formate acetyltransferase
Ami3637_06845	COG3829	transcription factor binding
Ami3637_06855	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
Ami3637_06865	COG1802	Transcriptional regulator
Ami3637_06885	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
Ami3637_06890	COG2986	histidine ammonia-lyase
Ami3637_06915	COG2211	Major facilitator Superfamily
Ami3637_06925	COG1012	belongs to the aldehyde dehydrogenase family
Ami3637_06960	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
Ami3637_06985	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
Ami3637_06990	COG0440	acetolactate synthase activity
Ami3637_06995	COG0028	Belongs to the TPP enzyme family
Ami3637_07000	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
Ami3637_07010	COG0066	3-isopropylmalate dehydratase activity
Ami3637_07015	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
Ami3637_07020	COG0066	3-isopropylmalate dehydratase activity
Ami3637_07035	COG5001	Diguanylate cyclase
Ami3637_07040	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
Ami3637_07045	COG0287	Prephenate dehydrogenase
Ami3637_07050	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
Ami3637_07055	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
Ami3637_07060	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
Ami3637_07070	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
Ami3637_07085	COG3152	Membrane
Ami3637_07095	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
Ami3637_07100	COG0251	oxidation-reduction process
Ami3637_07105	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Ami3637_07125	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
Ami3637_07140	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
Ami3637_07145	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
Ami3637_07180	COG5002	protein histidine kinase activity
Ami3637_07190	COG0745	RESPONSE REGULATOR receiver
Ami3637_07200	COG0840	transmembrane signaling receptor activity
Ami3637_07205	COG1404	Belongs to the peptidase S8 family
Ami3637_07210	COG1404	Belongs to the peptidase S8 family
Ami3637_07225	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Ami3637_07230	COG1757	Na H antiporter
Ami3637_07250	COG0572	uridine kinase
Ami3637_07255	COG0739	heme binding
Ami3637_07275	COG0305	Participates in initiation and elongation during chromosome replication
Ami3637_07280	COG0359	binds to the 23S rRNA
Ami3637_07285	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
Ami3637_07295	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
Ami3637_07305	COG0360	Binds together with S18 to 16S ribosomal RNA
Ami3637_07315	COG1079	Belongs to the binding-protein-dependent transport system permease family
Ami3637_07320	COG4603	Belongs to the binding-protein-dependent transport system permease family
Ami3637_07325	COG3845	ABC transporter
Ami3637_07355	COG1606	tRNA processing
Ami3637_07365	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
Ami3637_07370	COG0671	phosphoesterase, PA-phosphatase related
Ami3637_07380	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
Ami3637_07410	COG1131	(ABC) transporter
Ami3637_07415	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
Ami3637_07420	COG0180	Tryptophanyl-tRNA synthetase
Ami3637_07425	COG1191	sigma factor activity
Ami3637_07435	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
Ami3637_07440	COG0187	DNA topoisomerase II activity
Ami3637_07450	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
Ami3637_07455	COG0592	DNA-directed DNA polymerase activity
Ami3637_07465	COG0230	Belongs to the bacterial ribosomal protein bL34 family
Ami3637_07480	COG0706	membrane insertase activity
Ami3637_07485	COG1847	R3H domain protein
Ami3637_07490	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
Ami3637_07495	COG0445	tRNA wobble uridine modification
Ami3637_07500	COG0357	Ribosomal RNA small subunit methyltransferase G
Ami3637_07510	COG1192	Involved in chromosome partitioning
Ami3637_07515	COG1475	DNA binding
Ami3637_07520	COG3326	Membrane
Ami3637_07525	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Ami3637_07530	COG1136	(ABC) transporter
Ami3637_07535	COG0577	efflux transmembrane transporter activity
Ami3637_07545	COG1725	Transcriptional regulator
Ami3637_07575	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
Ami3637_07605	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
Ami3637_07635	COG1982	Orn Lys Arg decarboxylase major
Ami3637_07640	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
Ami3637_07645	COG0010	Belongs to the arginase family
Ami3637_07665	COG1757	Na H antiporter
Ami3637_07670	COG3829	transcription factor binding
Ami3637_07675	COG0686	Belongs to the AlaDH PNT family
Ami3637_07685	COG3829	transcription factor binding
Ami3637_07690	COG3804	dihydrodipicolinate reductase
Ami3637_07700	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
Ami3637_07710	COG5012	cobalamin binding
Ami3637_07725	COG0840	transmembrane signaling receptor activity
Ami3637_07730	COG2827	Endonuclease containing a URI domain
Ami3637_07735	COG0028	Belongs to the TPP enzyme family
Ami3637_07740	COG0835	chemotaxis
Ami3637_07740	COG0784	Response regulator, receiver
Ami3637_07745	COG0315	cyclic pyranopterin monophosphate synthase activity
Ami3637_07785	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
Ami3637_07800	COG0438	transferase activity, transferring glycosyl groups
Ami3637_07805	COG0438	transferase activity, transferring glycosyl groups
Ami3637_07820	COG1773	rubredoxin
Ami3637_07825	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
Ami3637_07855	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
Ami3637_07860	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
Ami3637_07875	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
Ami3637_07885	COG0745	RESPONSE REGULATOR receiver
Ami3637_07890	COG2205	protein histidine kinase activity
Ami3637_07910	COG1522	sequence-specific DNA binding
Ami3637_07925	COG1686	Belongs to the peptidase S11 family
Ami3637_07930	COG3457	Alanine racemase
Ami3637_07935	COG1126	abc transporter atp-binding protein
Ami3637_07940	COG0626	cystathionine gamma-synthase activity
Ami3637_07945	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Ami3637_07950	COG0765	amino acid transport
Ami3637_07960	COG3829	transcription factor binding
Ami3637_07965	COG0531	amino acid
Ami3637_07970	COG1574	metal-dependent hydrolase with the TIM-barrel fold
Ami3637_07985	COG3266	domain, Protein
Ami3637_07985	COG1361	Conserved repeat domain
Ami3637_07985	COG2911	Protein conserved in bacteria
Ami3637_07990	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Ami3637_08010	COG1288	antiporter activity
Ami3637_08070	COG1615	UPF0182 protein
Ami3637_08080	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
Ami3637_08130	COG0840	transmembrane signaling receptor activity
Ami3637_08135	COG2357	RelA SpoT domain protein
Ami3637_08140	COG0725	ABC transporter, periplasmic molybdate-binding protein
Ami3637_08145	COG4149	molybdate abc transporter
Ami3637_08150	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
Ami3637_08150	COG3608	succinylglutamate desuccinylase aspartoacylase
Ami3637_08160	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
Ami3637_08165	COG0840	transmembrane signaling receptor activity
Ami3637_08170	COG0840	transmembrane signaling receptor activity
Ami3637_08175	COG0640	Transcriptional regulator
Ami3637_08180	COG2217	Heavy metal translocating P-type atpase
Ami3637_08185	COG1757	Na H antiporter
Ami3637_08190	COG1574	metal-dependent hydrolase with the TIM-barrel fold
Ami3637_08195	COG0402	S-adenosylhomocysteine deaminase activity
Ami3637_08205	COG0583	DNA-binding transcription factor activity
Ami3637_08210	COG4656	Part of a membrane complex involved in electron transport
Ami3637_08220	COG4659	FMN binding
Ami3637_08225	COG4660	Part of a membrane complex involved in electron transport
Ami3637_08230	COG4657	Part of a membrane complex involved in electron transport
Ami3637_08235	COG1245	4Fe-4S binding domain
Ami3637_08235	COG2878	Part of a membrane complex involved in electron transport
Ami3637_08300	COG1131	(ABC) transporter
Ami3637_08320	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
Ami3637_08350	COG0019	diaminopimelate decarboxylase activity
Ami3637_08355	COG1115	amino acid carrier protein
Ami3637_08370	COG1752	Esterase of the alpha-beta hydrolase superfamily
Ami3637_08405	COG1122	ATPase activity
Ami3637_08420	COG2267	carboxylic ester hydrolase activity
Ami3637_08435	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
Ami3637_08440	COG1752	Esterase of the alpha-beta hydrolase superfamily
Ami3637_08450	COG0573	inorganic phosphate transmembrane transporter activity
Ami3637_08455	COG0581	inorganic phosphate transmembrane transporter activity
Ami3637_08460	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
Ami3637_08470	COG0745	RESPONSE REGULATOR receiver
Ami3637_08485	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
Ami3637_08490	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
Ami3637_08500	COG0183	Belongs to the thiolase family
Ami3637_08510	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
Ami3637_08515	COG0765	amino acid transport
Ami3637_08520	COG1126	abc transporter atp-binding protein
Ami3637_08545	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
Ami3637_08555	COG0281	malic enzyme
Ami3637_08560	COG2205	protein histidine kinase activity
Ami3637_08560	COG5002	protein histidine kinase activity
Ami3637_08560	COG0784	Response regulator, receiver
Ami3637_08570	COG1534	Rna-binding protein
Ami3637_08585	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
Ami3637_08590	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
Ami3637_08595	COG0534	Mate efflux family protein
Ami3637_08605	COG0356	it plays a direct role in the translocation of protons across the membrane
Ami3637_08610	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
Ami3637_08615	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
Ami3637_08620	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
Ami3637_08625	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
Ami3637_08630	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
Ami3637_08635	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
Ami3637_08640	COG0355	proton-transporting ATP synthase activity, rotational mechanism
Ami3637_08650	COG3706	GGDEF domain
Ami3637_08670	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
Ami3637_08670	COG1918	ferrous iron import across plasma membrane
Ami3637_08675	COG0739	heme binding
Ami3637_08675	COG0741	lytic transglycosylase activity
Ami3637_08675	COG1196	nuclear chromosome segregation
Ami3637_08680	COG1760	l-serine dehydratase
Ami3637_08690	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
Ami3637_08700	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
Ami3637_08720	COG1686	Belongs to the peptidase S11 family
Ami3637_08735	COG0840	transmembrane signaling receptor activity
Ami3637_08755	COG1380	Effector of murein hydrolase LrgA
Ami3637_08770	COG2186	Transcriptional regulator
Ami3637_08780	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
Ami3637_08785	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
Ami3637_08790	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
Ami3637_08795	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
Ami3637_08805	COG0138	bifunctional purine biosynthesis protein purh
Ami3637_08915	COG5002	protein histidine kinase activity
Ami3637_08925	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Ami3637_08935	COG1360	Flagellar Motor Protein
Ami3637_08940	COG1187	pseudouridine synthase activity
Ami3637_08970	COG4978	Transcriptional regulator
Ami3637_08970	COG0789	Transcriptional regulator
Ami3637_08975	COG1309	transcriptional regulator
Ami3637_08985	COG1566	PFAM secretion protein HlyD family protein
Ami3637_08990	COG2814	Major facilitator Superfamily
Ami3637_08995	COG3829	transcription factor binding
Ami3637_09005	COG4187	Peptidase family M20/M25/M40
Ami3637_09010	COG0833	amino acid
Ami3637_09025	COG1361	Conserved repeat domain
Ami3637_09050	COG2205	protein histidine kinase activity
Ami3637_09055	COG0577	efflux transmembrane transporter activity
Ami3637_09055	COG1136	(ABC) transporter
Ami3637_09065	COG0445	tRNA wobble uridine modification
Ami3637_09065	COG0445	tRNA wobble uridine modification
Ami3637_09080	COG2195	Cleaves the N-terminal amino acid of tripeptides
Ami3637_09085	COG2195	Cleaves the N-terminal amino acid of tripeptides
Ami3637_09095	COG0165	Argininosuccinate lyase
Ami3637_09110	COG2080	2 iron, 2 sulfur cluster binding
Ami3637_09110	COG1529	Aldehyde oxidase and xanthine dehydrogenase
Ami3637_09120	COG1607	acyl-coa hydrolase
Ami3637_09130	COG0604	alcohol dehydrogenase
Ami3637_09135	COG0604	alcohol dehydrogenase
Ami3637_09140	COG1509	lysine 2,3-aminomutase activity
Ami3637_09150	COG1193	negative regulation of DNA recombination
Ami3637_09155	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
Ami3637_09160	COG5012	cobalamin binding
Ami3637_09165	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
Ami3637_09175	COG0784	Response regulator, receiver
Ami3637_09175	COG0835	chemotaxis
Ami3637_09195	COG0860	N-Acetylmuramoyl-L-alanine amidase
Ami3637_09195	COG1388	LysM domain
Ami3637_09210	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
Ami3637_09215	COG0527	aspartate kinase activity
Ami3637_09220	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
Ami3637_09225	COG0348	domain, Protein
Ami3637_09225	COG3901	Regulator of nitric oxide reductase transcription
Ami3637_09230	COG4536	flavin adenine dinucleotide binding
Ami3637_09235	COG0653	protein targeting
Ami3637_09245	COG2183	response to ionizing radiation
Ami3637_09255	COG0546	phosphoglycolate phosphatase activity
Ami3637_09260	COG0438	transferase activity, transferring glycosyl groups
Ami3637_09265	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Ami3637_09275	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
Ami3637_09280	COG1028	Short-chain dehydrogenase reductase Sdr
Ami3637_09290	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
Ami3637_09305	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
Ami3637_09310	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
Ami3637_09365	COG0840	transmembrane signaling receptor activity
Ami3637_09370	COG2197	response regulator
Ami3637_09505	COG1222	aaa ATPase
Ami3637_09510	COG2197	response regulator
Ami3637_09545	COG4303	Ethanolamine ammonia lyase large subunit
Ami3637_09555	COG4816	utilization protein
Ami3637_09560	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
Ami3637_09585	COG4869	propanediol catabolic process
Ami3637_09595	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
Ami3637_09625	COG4820	ethanolamine utilization protein (EutJ)
Ami3637_09655	COG2234	aminopeptidase activity
Ami3637_09665	COG0318	PFAM AMP-dependent synthetase and ligase
Ami3637_09670	COG1022	Amp-dependent synthetase and ligase
Ami3637_09675	COG3457	Alanine racemase
Ami3637_09680	COG0697	spore germination
Ami3637_09685	COG0745	RESPONSE REGULATOR receiver
Ami3637_09690	COG0642	Histidine kinase
Ami3637_09695	COG1136	(ABC) transporter
Ami3637_09705	COG0745	RESPONSE REGULATOR receiver
Ami3637_09710	COG5002	protein histidine kinase activity
Ami3637_09720	COG1876	peptidase activity
Ami3637_09725	COG3279	Response regulator of the LytR AlgR family
Ami3637_09770	COG0789	Transcriptional regulator
Ami3637_09770	COG4978	Transcriptional regulator
Ami3637_09775	COG1811	Na channel or pump
Ami3637_09780	COG1592	Rubrerythrin
Ami3637_09780	COG1773	rubredoxin
Ami3637_09790	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
Ami3637_09800	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
Ami3637_09805	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
Ami3637_09815	COG1214	PFAM Peptidase M22, glycoprotease
Ami3637_09820	COG0456	acetyltransferase
Ami3637_09835	COG0488	(ABC) transporter
Ami3637_09840	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
Ami3637_09845	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
Ami3637_09865	COG1811	Na channel or pump
Ami3637_09870	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
Ami3637_09875	COG0459	protein refolding
Ami3637_09895	COG1115	amino acid carrier protein
Ami3637_09905	COG1876	peptidase activity
Ami3637_09910	COG0516	GMP reductase activity
Ami3637_09910	COG0517	IMP dehydrogenase activity
Ami3637_09945	COG2373	Large extracellular alpha-helical protein
Ami3637_10000	COG0596	Alpha beta hydrolase
Ami3637_10080	COG0833	amino acid
Ami3637_10085	COG0583	DNA-binding transcription factor activity
Ami3637_10090	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
Ami3637_10100	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
Ami3637_10130	COG3708	Transcriptional regulator
Ami3637_10130	COG2207	Transcriptional regulator
Ami3637_10155	COG0628	permease
Ami3637_10165	COG2002	toxin-antitoxin pair type II binding
Ami3637_10175	COG1733	regulation of RNA biosynthetic process
Ami3637_10180	COG1357	PFAM Pentapeptide repeats (8 copies)
Ami3637_10185	COG1937	Protein conserved in bacteria
Ami3637_10195	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
Ami3637_10200	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
Ami3637_10205	COG0534	Mate efflux family protein
Ami3637_10210	COG0840	transmembrane signaling receptor activity
Ami3637_10220	COG0840	transmembrane signaling receptor activity
Ami3637_10225	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
Ami3637_10230	COG2011	ABC-type metal ion transport system permease component
Ami3637_10235	COG1464	Belongs to the NlpA lipoprotein family
Ami3637_10255	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
Ami3637_10260	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Ami3637_10265	COG0326	Molecular chaperone. Has ATPase activity
Ami3637_10300	COG0559	Belongs to the binding-protein-dependent transport system permease family
Ami3637_10325	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
Ami3637_10335	COG1053	succinate dehydrogenase
Ami3637_10345	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
Ami3637_10350	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
Ami3637_10370	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
Ami3637_10370	COG0723	plastoquinol--plastocyanin reductase activity
Ami3637_10375	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
Ami3637_10405	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
Ami3637_10420	COG1132	(ABC) transporter
Ami3637_10430	COG1268	BioY protein
Ami3637_10445	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ami3637_10445	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ami3637_10450	COG0513	Belongs to the DEAD box helicase family
Ami3637_10455	COG1595	DNA-templated transcription, initiation
Ami3637_10460	COG0154	amidase activity
Ami3637_10465	COG0840	transmembrane signaling receptor activity
Ami3637_10475	COG0463	Glycosyl transferase, family 2
Ami3637_10490	COG0084	hydrolase, TatD family'
Ami3637_10515	COG0488	(ABC) transporter
Ami3637_10520	COG0037	tRNA processing
Ami3637_10525	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
Ami3637_10530	COG2508	Transcriptional regulator
Ami3637_10530	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
Ami3637_10550	COG4770	biotin carboxylase activity
Ami3637_10560	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
Ami3637_10565	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
Ami3637_10570	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
Ami3637_10580	COG0017	Asparaginyl-tRNA synthetase
Ami3637_10585	COG0252	asparaginase activity
Ami3637_10595	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
Ami3637_10600	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
Ami3637_10605	COG0531	amino acid
Ami3637_10610	COG0745	RESPONSE REGULATOR receiver
Ami3637_10615	COG5002	protein histidine kinase activity
Ami3637_10615	COG3850	Histidine kinase
Ami3637_10625	COG4956	integral membrane protein (PIN domain superfamily)
Ami3637_10630	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
Ami3637_10630	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
Ami3637_10635	COG0442	prolyl-tRNA aminoacylation
Ami3637_10640	COG2860	membrane
Ami3637_10650	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
Ami3637_10655	COG0739	heme binding
Ami3637_10660	COG0215	cysteine-tRNA ligase activity
Ami3637_10665	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
Ami3637_10675	COG1234	tRNA 3'-trailer cleavage
Ami3637_10685	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Ami3637_10705	COG2030	dehydratase
Ami3637_10715	COG3243	poly(R)-hydroxyalkanoic acid synthase
Ami3637_10725	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
Ami3637_10765	COG0267	Belongs to the bacterial ribosomal protein bL33 family
Ami3637_10770	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Ami3637_10775	COG0250	Participates in transcription elongation, termination and antitermination
Ami3637_10780	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
Ami3637_10785	COG0081	regulation of translation
Ami3637_10795	COG0222	ribosome binding
Ami3637_10810	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
Ami3637_10815	COG0049	tRNA binding
Ami3637_10825	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
Ami3637_10830	COG0622	Phosphoesterase
Ami3637_10845	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
Ami3637_10855	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
Ami3637_10860	COG0210	DNA helicase
Ami3637_10865	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
Ami3637_10895	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
Ami3637_10900	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
Ami3637_10905	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
Ami3637_10920	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
Ami3637_10920	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
Ami3637_10920	COG1013	pyruvate-flavodoxin oxidoreductase activity
Ami3637_10920	COG0674	pyruvate-flavodoxin oxidoreductase activity
Ami3637_10925	COG1131	(ABC) transporter
Ami3637_10950	COG0372	Belongs to the citrate synthase family
Ami3637_10955	COG0556	nucleotide-excision repair
Ami3637_10965	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
Ami3637_10985	COG0191	fructose-bisphosphate aldolase activity
Ami3637_11010	COG0681	Belongs to the peptidase S26 family
Ami3637_11015	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
Ami3637_11035	COG4974	Belongs to the 'phage' integrase family
Ami3637_11060	COG2359	stage V sporulation protein S
Ami3637_11080	COG1388	LysM domain
Ami3637_11080	COG3584	3D domain protein
Ami3637_11160	COG5484	DNA packaging
Ami3637_11255	COG3299	homolog of phage Mu protein gp47
Ami3637_11340	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ami3637_11350	COG2247	cell wall binding repeat
Ami3637_11350	COG0860	N-Acetylmuramoyl-L-alanine amidase
Ami3637_11355	COG1846	Transcriptional regulator
Ami3637_11415	COG0697	spore germination
Ami3637_11420	COG1733	regulation of RNA biosynthetic process
Ami3637_11455	COG1882	Formate acetyltransferase
Ami3637_11460	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Ami3637_11475	COG0656	L-ascorbic acid biosynthetic process
Ami3637_11480	COG2207	Transcriptional regulator
Ami3637_11480	COG1917	Cupin 2, conserved barrel domain protein
Ami3637_11485	COG5012	cobalamin binding
Ami3637_11510	COG5012	cobalamin binding
Ami3637_11535	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
Ami3637_11555	COG0523	cobalamin synthesis protein
Ami3637_11580	COG3409	Peptidoglycan-binding domain 1 protein
Ami3637_11580	COG3773	Cell wall hydrolase
Ami3637_11595	COG3853	Toxic anion resistance protein (TelA)
Ami3637_11625	COG1566	PFAM secretion protein HlyD family protein
Ami3637_11655	COG4191	Histidine kinase
Ami3637_11660	COG2204	response regulator
Ami3637_11665	COG0531	amino acid
Ami3637_11670	COG0531	amino acid
Ami3637_11680	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
Ami3637_11685	COG1696	Membrane protein involved in D-alanine export
Ami3637_11695	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
Ami3637_11715	COG1129	ABC transporter
Ami3637_11730	COG1063	alcohol dehydrogenase
Ami3637_11735	COG1070	Carbohydrate kinase
Ami3637_11740	COG1609	Transcriptional regulator
Ami3637_11750	COG1129	ABC transporter
Ami3637_11755	COG1172	Belongs to the binding-protein-dependent transport system permease family
Ami3637_11765	COG1045	serine acetyltransferase
Ami3637_11785	COG0504	CTP synthase activity
Ami3637_11805	COG1609	Transcriptional regulator
Ami3637_11835	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
Ami3637_11845	COG1136	(ABC) transporter
Ami3637_11850	COG0577	efflux transmembrane transporter activity
Ami3637_11850	COG1136	(ABC) transporter
Ami3637_11855	COG0577	efflux transmembrane transporter activity
Ami3637_11895	COG0116	Belongs to the methyltransferase superfamily
Ami3637_11900	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
Ami3637_11905	COG0505	Belongs to the CarA family
Ami3637_11910	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
Ami3637_11915	COG3279	Response regulator of the LytR AlgR family
Ami3637_11945	COG1802	Transcriptional regulator
Ami3637_11950	COG0628	permease
Ami3637_11985	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
Ami3637_11995	COG0470	DNA polymerase III
Ami3637_12005	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
Ami3637_12025	COG2002	toxin-antitoxin pair type II binding
Ami3637_12035	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
Ami3637_12040	COG0012	GTP binding
Ami3637_12045	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
Ami3637_12050	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
Ami3637_12065	COG2001	Belongs to the MraZ family
Ami3637_12080	COG0768	penicillin binding
Ami3637_12090	COG0768	penicillin binding
Ami3637_12095	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Ami3637_12100	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Ami3637_12105	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
Ami3637_12110	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
Ami3637_12120	COG0772	Belongs to the SEDS family
Ami3637_12125	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
Ami3637_12130	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
Ami3637_12150	COG3856	small basic protein
Ami3637_12155	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
Ami3637_12160	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
Ami3637_12165	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
Ami3637_12170	COG0072	phenylalanine-tRNA ligase activity
Ami3637_12170	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
Ami3637_12175	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
Ami3637_12190	COG0018	arginyl-trna synthetase
Ami3637_12265	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
Ami3637_12285	COG5377	YqaJ viral recombinase family
Ami3637_12395	COG1690	Belongs to the RtcB family
Ami3637_12400	COG3541	Predicted nucleotidyltransferase
Ami3637_12405	COG0242	peptide deformylase activity
Ami3637_12410	COG0450	alkyl hydroperoxide reductase
Ami3637_12420	COG1088	dTDP-glucose 4,6-dehydratase activity
Ami3637_12450	COG5001	Diguanylate cyclase
Ami3637_12460	COG0840	transmembrane signaling receptor activity
Ami3637_12515	COG0488	(ABC) transporter
Ami3637_12520	COG0826	peptidase U32
Ami3637_12530	COG0833	amino acid
Ami3637_12535	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
Ami3637_12550	COG1288	antiporter activity
Ami3637_12565	COG0205	6-phosphofructokinase activity
Ami3637_12575	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
Ami3637_12575	COG0140	phosphoribosyl-ATP diphosphatase activity
Ami3637_12580	COG0107	imidazoleglycerol-phosphate synthase activity
Ami3637_12585	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
Ami3637_12590	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
Ami3637_12595	COG0131	Imidazoleglycerol-phosphate dehydratase
Ami3637_12600	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Ami3637_12605	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
Ami3637_12610	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
Ami3637_12615	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
Ami3637_12625	COG1802	Transcriptional regulator
Ami3637_12630	COG0473	3-isopropylmalate dehydrogenase activity
Ami3637_12635	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
Ami3637_12640	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Ami3637_12655	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
Ami3637_12660	COG1309	transcriptional regulator
Ami3637_12665	COG0653	protein targeting
Ami3637_12670	COG0460	homoserine dehydrogenase
Ami3637_12680	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
Ami3637_12685	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
Ami3637_12695	COG0149	triose-phosphate isomerase activity
Ami3637_12700	COG0148	phosphopyruvate hydratase activity
Ami3637_12705	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
Ami3637_12740	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
Ami3637_12760	COG0557	exoribonuclease II activity
Ami3637_12765	COG0517	IMP dehydrogenase activity
Ami3637_12770	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Ami3637_12775	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
Ami3637_12780	COG0475	glutathione-regulated potassium exporter activity
Ami3637_12780	COG0569	domain protein
Ami3637_12790	COG0561	phosphatase activity
Ami3637_12800	COG0792	nuclease activity
Ami3637_12810	COG0758	DNA mediated transformation
Ami3637_12820	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
Ami3637_12825	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
Ami3637_12830	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
Ami3637_12840	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
Ami3637_12845	COG1739	Uncharacterized protein family UPF0029
Ami3637_12990	COG1435	thymidine kinase activity
Ami3637_12995	COG1242	4 iron, 4 sulfur cluster binding
Ami3637_13005	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
Ami3637_13010	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
Ami3637_13025	COG2738	Putative neutral zinc metallopeptidase
Ami3637_13030	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
Ami3637_13030	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Ami3637_13040	COG0515	serine threonine protein kinase
Ami3637_13040	COG2815	serine threonine protein kinase
Ami3637_13045	COG2815	serine threonine protein kinase
Ami3637_13045	COG0515	serine threonine protein kinase
Ami3637_13050	COG1162	GTPase activity
Ami3637_13055	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
Ami3637_13065	COG0488	(ABC) transporter
Ami3637_13140	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ami3637_13145	COG2081	HI0933 family
Ami3637_13155	COG1982	Orn Lys Arg decarboxylase major
Ami3637_13165	COG1131	(ABC) transporter
Ami3637_13170	COG1725	Transcriptional regulator
Ami3637_13185	COG0616	signal peptide processing
Ami3637_13190	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
Ami3637_13195	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
Ami3637_13200	COG0228	four-way junction DNA binding
Ami3637_13205	COG1837	Belongs to the UPF0109 family
Ami3637_13210	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
Ami3637_13215	COG0336	Belongs to the RNA methyltransferase TrmD family
Ami3637_13225	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
Ami3637_13230	COG1799	cell septum assembly
Ami3637_13240	COG3599	regulation of cell shape
Ami3637_13245	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
Ami3637_13250	COG0564	pseudouridine synthase activity
Ami3637_13270	COG1561	YicC-like family, N-terminal region
Ami3637_13275	COG0194	GDP metabolic process
Ami3637_13280	COG1758	RNA polymerase activity
Ami3637_13290	COG0052	Belongs to the universal ribosomal protein uS2 family
Ami3637_13295	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
Ami3637_13305	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
Ami3637_13310	COG0528	UMP kinase activity
Ami3637_13315	COG0233	cytoplasmic translational termination
Ami3637_13320	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
Ami3637_13325	COG0575	Belongs to the CDS family
Ami3637_13330	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
Ami3637_13335	COG0750	zinc metalloprotease
Ami3637_13340	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
Ami3637_13355	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
Ami3637_13365	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
Ami3637_13375	COG0779	Required for maturation of 30S ribosomal subunits
Ami3637_13380	COG0195	Participates in both transcription termination and antitermination
Ami3637_13395	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
Ami3637_13400	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
Ami3637_13405	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
Ami3637_13415	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
Ami3637_13420	COG0196	riboflavin kinase activity
Ami3637_13430	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
Ami3637_13440	COG0004	ammonium transporteR
Ami3637_13445	COG2197	response regulator
Ami3637_13450	COG0004	ammonium transporteR
Ami3637_13465	COG1368	sulfuric ester hydrolase activity
Ami3637_13480	COG1454	alcohol dehydrogenase
Ami3637_13500	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Ami3637_13500	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
Ami3637_13540	COG1794	racemase activity, acting on amino acids and derivatives
Ami3637_13545	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Ami3637_13550	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
Ami3637_13565	COG1181	Belongs to the D-alanine--D-alanine ligase family
Ami3637_13580	COG0833	amino acid
Ami3637_13595	COG1115	amino acid carrier protein
Ami3637_13600	COG4191	Histidine kinase
Ami3637_13610	COG0833	amino acid
Ami3637_13660	COG0860	N-Acetylmuramoyl-L-alanine amidase
Ami3637_13670	COG2431	L-lysine efflux transmembrane transporter activity
Ami3637_13675	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
Ami3637_13685	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
Ami3637_13690	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
Ami3637_13695	COG0291	Belongs to the bacterial ribosomal protein bL35 family
Ami3637_13710	COG1191	sigma factor activity
Ami3637_13735	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Ami3637_13745	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
Ami3637_13750	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
Ami3637_13765	COG0544	peptidyl-prolyl cis-trans isomerase activity
Ami3637_13770	COG1873	PFAM PRC-barrel domain
Ami3637_13775	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
Ami3637_13780	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
Ami3637_13805	COG0531	amino acid
Ami3637_13810	COG2205	protein histidine kinase activity
Ami3637_13820	COG2204	response regulator
Ami3637_13830	COG1136	(ABC) transporter
Ami3637_13845	COG2199	diguanylate cyclase activity
Ami3637_13865	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
Ami3637_13885	COG2003	Belongs to the UPF0758 family
Ami3637_13890	COG1077	Cell shape determining protein MreB Mrl
Ami3637_13905	COG0768	penicillin binding
Ami3637_13910	COG2894	cell division
Ami3637_13915	COG0772	Belongs to the SEDS family
Ami3637_13920	COG1418	mRNA catabolic process
Ami3637_13925	COG0534	Mate efflux family protein
Ami3637_13930	COG1104	cysteine desulfurase activity
Ami3637_13935	COG0301	tRNA thio-modification
Ami3637_13945	COG2172	sigma factor antagonist activity
Ami3637_13950	COG1191	sigma factor activity
Ami3637_13955	COG1960	acyl-CoA dehydrogenase activity
Ami3637_13960	COG2086	electron transfer activity
Ami3637_13965	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
Ami3637_13985	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
Ami3637_14030	COG0658	competence protein
Ami3637_14030	COG2333	competence protein COMEC
Ami3637_14085	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Ami3637_14090	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
Ami3637_14110	COG0574	Belongs to the PEP-utilizing enzyme family
Ami3637_14110	COG3848	Pyruvate phosphate dikinase
Ami3637_14115	COG1309	transcriptional regulator
Ami3637_14120	COG1024	Enoyl-CoA hydratase
Ami3637_14140	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
Ami3637_14160	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ami3637_14180	COG2205	protein histidine kinase activity
Ami3637_14185	COG0745	RESPONSE REGULATOR receiver
Ami3637_14195	COG0569	domain protein
Ami3637_14205	COG1686	Belongs to the peptidase S11 family
Ami3637_14215	COG1489	DNA binding
Ami3637_14260	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
Ami3637_14275	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
Ami3637_14285	COG0674	pyruvate-flavodoxin oxidoreductase activity
Ami3637_14290	COG1013	pyruvate-flavodoxin oxidoreductase activity
Ami3637_14310	COG0583	DNA-binding transcription factor activity
Ami3637_14345	COG0242	peptide deformylase activity
Ami3637_14360	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
Ami3637_14370	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
Ami3637_14375	COG0352	thiamine-phosphate diphosphorylase activity
Ami3637_14375	COG0351	phosphomethylpyrimidine kinase
Ami3637_14380	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
Ami3637_14395	COG0813	purine-nucleoside phosphorylase activity
Ami3637_14405	COG0318	PFAM AMP-dependent synthetase and ligase
Ami3637_14425	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
Ami3637_14430	COG1151	hydroxylamine reductase activity
Ami3637_14445	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
Ami3637_14455	COG3706	GGDEF domain
Ami3637_14465	COG4475	Protein of unknown function (DUF436)
Ami3637_14475	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
Ami3637_14490	COG4555	ABC transporter
Ami3637_14510	COG0789	Transcriptional regulator
Ami3637_14510	COG4978	Transcriptional regulator
Ami3637_14515	COG1720	tRNA m6t6A37 methyltransferase activity
Ami3637_14525	COG3546	catalase activity
Ami3637_14535	COG1321	iron dependent repressor
Ami3637_14545	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
Ami3637_14565	COG0840	transmembrane signaling receptor activity
Ami3637_14570	COG3848	Pyruvate phosphate dikinase
Ami3637_14570	COG0574	Belongs to the PEP-utilizing enzyme family
Ami3637_14590	COG1476	TRANSCRIPTIONal
Ami3637_14600	COG0531	amino acid
Ami3637_14615	COG1141	Ferredoxin
Ami3637_14670	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
Ami3637_14755	COG2508	Transcriptional regulator
Ami3637_14765	COG0436	Aminotransferase
Ami3637_14770	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
Ami3637_14770	COG2508	Transcriptional regulator
Ami3637_14775	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Ami3637_14830	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
Ami3637_14865	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
Ami3637_14865	COG1112	Superfamily I DNA and RNA helicases and helicase subunits
Ami3637_14910	COG3760	aminoacyl-tRNA metabolism involved in translational fidelity
Ami3637_14915	COG0519	Catalyzes the synthesis of GMP from XMP
Ami3637_14930	COG3153	acetyltransferase
Ami3637_14945	COG1408	metallophosphoesterase
Ami3637_14995	COG0519	Catalyzes the synthesis of GMP from XMP
Ami3637_15030	COG1247	-acetyltransferase
Ami3637_15055	COG0475	glutathione-regulated potassium exporter activity
Ami3637_15085	COG0531	amino acid
Ami3637_15090	COG1686	Belongs to the peptidase S11 family
Ami3637_15095	COG1595	DNA-templated transcription, initiation
Ami3637_15110	COG2076	Multidrug Resistance protein
Ami3637_15130	COG1175	transmembrane transport
Ami3637_15135	COG1175	transmembrane transport
Ami3637_15140	COG1175	transmembrane transport
Ami3637_15165	COG3842	ATPase activity
Ami3637_15195	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
Ami3637_15220	COG1177	transmembrane transport
Ami3637_15225	COG3842	ATPase activity
Ami3637_15235	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
Ami3637_15240	COG1733	regulation of RNA biosynthetic process
Ami3637_15250	COG2878	Part of a membrane complex involved in electron transport
Ami3637_15260	COG2205	protein histidine kinase activity
Ami3637_15260	COG2770	Histidine kinase
Ami3637_15265	COG0745	RESPONSE REGULATOR receiver
Ami3637_15280	COG0348	domain, Protein
Ami3637_15295	COG0583	DNA-binding transcription factor activity
Ami3637_15305	COG0726	polysaccharide deacetylase
Ami3637_15310	COG0456	acetyltransferase
Ami3637_15315	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
Ami3637_15335	COG1649	PFAM Uncharacterised BCR, COG1649
Ami3637_15350	COG0420	3'-5' exonuclease activity
Ami3637_15355	COG0419	ATPase involved in DNA repair
Ami3637_15365	COG1404	Belongs to the peptidase S8 family
Ami3637_15410	COG2184	nucleotidyltransferase activity
Ami3637_15420	COG1362	aminopeptidase activity
Ami3637_15425	COG0006	proline dipeptidase activity
Ami3637_15450	COG0741	lytic transglycosylase activity
Ami3637_15470	COG1132	(ABC) transporter
Ami3637_15510	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
Ami3637_15525	COG0840	transmembrane signaling receptor activity
Ami3637_15535	COG2957	Belongs to the agmatine deiminase family
Ami3637_15540	COG0833	amino acid
Ami3637_15545	COG4191	Histidine kinase
Ami3637_15550	COG2204	response regulator
Ami3637_15560	COG0840	transmembrane signaling receptor activity
Ami3637_15575	COG0534	Mate efflux family protein
Ami3637_15605	COG4974	Belongs to the 'phage' integrase family
Ami3637_15650	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ami3637_15675	COG3706	GGDEF domain
Ami3637_15680	COG3706	GGDEF domain
Ami3637_15690	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
Ami3637_15730	COG2710	Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The NB-protein
Ami3637_15750	COG1373	ATPase (AAA superfamily
Ami3637_15765	COG1696	Membrane protein involved in D-alanine export
Ami3637_15785	COG0612	Peptidase, M16
Ami3637_15805	COG1797	cobyrinic acid a,c-diamide synthase activity
Ami3637_15810	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
Ami3637_15830	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
Ami3637_15835	COG1492	cobalamin metabolic process
Ami3637_15845	COG0753	catalase activity
Ami3637_15860	COG0306	phosphate transporter
Ami3637_15865	COG0232	Belongs to the dGTPase family. Type 2 subfamily
Ami3637_15870	COG0358	DNA primase activity
Ami3637_15880	COG0358	DNA primase activity
Ami3637_15885	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
Ami3637_15890	COG2384	SAM-dependent methyltransferase
Ami3637_15910	COG0534	Mate efflux family protein
Ami3637_15925	COG0217	transcriptional regulatory protein
Ami3637_15940	COG2116	formate transmembrane transporter activity
Ami3637_15955	COG3191	aminopeptidase activity
Ami3637_15965	COG1253	flavin adenine dinucleotide binding
Ami3637_15970	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
Ami3637_15975	COG1595	DNA-templated transcription, initiation
Ami3637_15985	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Ami3637_15985	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
Ami3637_15990	COG0237	dephospho-CoA kinase activity
Ami3637_16010	COG1862	Preprotein translocase
Ami3637_16020	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Ami3637_16020	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
Ami3637_16025	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
Ami3637_16030	COG1490	D-aminoacyl-tRNA deacylase activity
Ami3637_16035	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
Ami3637_16040	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Ami3637_16045	COG0124	histidyl-tRNA synthetase
Ami3637_16050	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
Ami3637_16060	COG1713	HD superfamily hydrolase involved in NAD metabolism
Ami3637_16065	COG0799	negative regulation of ribosome biogenesis
Ami3637_16070	COG0495	leucyl-tRNA aminoacylation
Ami3637_16075	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
Ami3637_16080	COG3679	Belongs to the UPF0342 family
Ami3637_16085	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
Ami3637_16090	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
Ami3637_16095	COG4122	O-methyltransferase activity
Ami3637_16100	COG0826	peptidase U32
Ami3637_16105	COG1253	flavin adenine dinucleotide binding
Ami3637_16115	COG3854	ATPases associated with a variety of cellular activities
Ami3637_16135	COG0667	Aldo Keto reductase
Ami3637_16145	COG4472	Bacterial protein of unknown function (DUF965)
Ami3637_16165	COG0789	Transcriptional regulator
Ami3637_16175	COG0667	Aldo Keto reductase
Ami3637_16190	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
Ami3637_16210	COG1592	Rubrerythrin
Ami3637_16215	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
Ami3637_16215	COG0392	lysyltransferase activity
Ami3637_16220	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
Ami3637_16220	COG0392	lysyltransferase activity
Ami3637_16225	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
Ami3637_16225	COG0392	lysyltransferase activity
Ami3637_16250	COG3901	Regulator of nitric oxide reductase transcription
Ami3637_16250	COG0348	domain, Protein
Ami3637_16255	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
Ami3637_16275	COG1388	LysM domain
Ami3637_16280	COG0346	lactoylglutathione lyase activity
Ami3637_16285	COG0398	Pfam SNARE associated Golgi protein
Ami3637_16290	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
Ami3637_16300	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
Ami3637_16305	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
Ami3637_16310	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
Ami3637_16315	COG0436	Aminotransferase
Ami3637_16340	COG1570	exodeoxyribonuclease VII activity
Ami3637_16345	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
Ami3637_16350	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
Ami3637_16395	COG4224	UPF0291 protein
Ami3637_16400	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
Ami3637_16405	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
Ami3637_16415	COG0750	zinc metalloprotease
Ami3637_16425	COG1555	photosystem II stabilization
Ami3637_16425	COG1596	polysaccharide export
Ami3637_16435	COG0635	Involved in the biosynthesis of porphyrin-containing compound
Ami3637_16455	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
Ami3637_16460	COG0211	Belongs to the bacterial ribosomal protein bL27 family
Ami3637_16465	COG0261	This protein binds to 23S rRNA in the presence of protein L20
Ami3637_16470	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
Ami3637_16480	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
Ami3637_16485	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
Ami3637_16560	COG1652	LysM domain
Ami3637_16635	COG0582	viral genome integration into host DNA
Ami3637_16640	COG4974	Belongs to the 'phage' integrase family
Ami3637_16715	COG1192	Involved in chromosome partitioning
Ami3637_16780	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
Ami3637_16785	COG0333	Belongs to the bacterial ribosomal protein bL32 family
Ami3637_16790	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
Ami3637_16795	COG1323	Belongs to the UPF0348 family
Ami3637_16810	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
Ami3637_16815	COG0742	ribosomal rna small subunit methyltransferase
Ami3637_16825	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
Ami3637_16835	COG0227	Belongs to the bacterial ribosomal protein bL28 family
Ami3637_16840	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
Ami3637_16865	COG0583	DNA-binding transcription factor activity
Ami3637_16870	COG2855	membrane
Ami3637_16880	COG0840	transmembrane signaling receptor activity
Ami3637_16885	COG0840	transmembrane signaling receptor activity
Ami3637_16890	COG3290	protein histidine kinase activity
Ami3637_16890	COG0840	transmembrane signaling receptor activity
Ami3637_16895	COG1309	transcriptional regulator
Ami3637_16900	COG1194	a g-specific adenine glycosylase
Ami3637_16920	COG0521	Mo-molybdopterin cofactor biosynthetic process
Ami3637_16965	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
Ami3637_16980	COG1842	Phage shock protein A