locus-tag class description CO731_00001 PF11638 DnaA N-terminal domain CO731_00001 PF08299 Bacterial dnaA protein helix-turn-helix CO731_00001 PF00308 Bacterial dnaA protein CO731_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain CO731_00002 PF02767 DNA polymerase III beta subunit, central domain CO731_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain CO731_00003 PF02463 RecF/RecN/SMC N terminal domain CO731_00004 PF00581 Rhodanese-like domain CO731_00004 PF00899 ThiF family CO731_00008 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CO731_00008 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CO731_00010 PF01475 Ferric uptake regulator family CO731_00011 PF07977 FabA-like domain CO731_00012 PF02801 Beta-ketoacyl synthase, C-terminal domain CO731_00012 PF00109 Beta-ketoacyl synthase, N-terminal domain CO731_00014 PF00563 EAL domain CO731_00014 PF03707 Bacterial signalling protein N terminal repeat CO731_00014 PF00990 Diguanylate cyclase, GGDEF domain CO731_00014 PF13188 PAS domain CO731_00015 PF05175 Methyltransferase small domain CO731_00015 PF08468 Methyltransferase small domain N-terminal CO731_00016 PF00013 KH domain CO731_00016 PF01138 3' exoribonuclease family, domain 1 CO731_00016 PF03725 3' exoribonuclease family, domain 2 CO731_00016 PF00575 S1 RNA binding domain CO731_00016 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CO731_00017 PF00312 Ribosomal protein S15 CO731_00018 PF01544 CorA-like Mg2+ transporter protein CO731_00019 PF01509 TruB family pseudouridylate synthase (N terminal domain) CO731_00019 PF16198 tRNA pseudouridylate synthase B C-terminal domain CO731_00019 PF09157 Pseudouridine synthase II TruB, C-terminal CO731_00020 PF02033 Ribosome-binding factor A CO731_00021 PF11987 Translation-initiation factor 2 CO731_00021 PF08364 Bacterial translation initiation factor IF-2 associated region CO731_00021 PF04760 Translation initiation factor IF-2, N-terminal region CO731_00021 PF00009 Elongation factor Tu GTP binding domain CO731_00023 PF13184 NusA-like KH domain CO731_00023 PF08529 NusA N-terminal domain CO731_00023 PF00575 S1 RNA binding domain CO731_00024 PF17384 RimP C-terminal SH3 domain CO731_00024 PF02576 RimP N-terminal domain CO731_00026 PF01970 Tripartite tricarboxylate transporter TctA family CO731_00030 PF00072 Response regulator receiver domain CO731_00030 PF00486 Transcriptional regulatory protein, C terminal CO731_00031 PF08521 Two-component sensor kinase N-terminal CO731_00031 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_00031 PF00512 His Kinase A (phospho-acceptor) domain CO731_00032 PF02390 Putative methyltransferase CO731_00033 PF00438 S-adenosylmethionine synthetase, N-terminal domain CO731_00033 PF02772 S-adenosylmethionine synthetase, central domain CO731_00033 PF02773 S-adenosylmethionine synthetase, C-terminal domain CO731_00034 PF01381 Helix-turn-helix CO731_00035 PF00795 Carbon-nitrogen hydrolase CO731_00036 PF00571 CBS domain CO731_00036 PF03471 Transporter associated domain CO731_00037 PF02130 Uncharacterized protein family UPF0054 CO731_00038 PF02562 PhoH-like protein CO731_00039 PF01938 TRAM domain CO731_00039 PF00919 Uncharacterized protein family UPF0004 CO731_00039 PF04055 Radical SAM superfamily CO731_00040 PF13505 Outer membrane protein beta-barrel domain CO731_00045 PF00814 Glycoprotease family CO731_00046 PF01274 Malate synthase CO731_00047 PF01968 Hydantoinase/oxoprolinase CO731_00047 PF05378 Hydantoinase/oxoprolinase N-terminal region CO731_00053 PF01541 GIY-YIG catalytic domain CO731_00054 PF03144 Elongation factor Tu domain 2 CO731_00054 PF00679 Elongation factor G C-terminus CO731_00054 PF00009 Elongation factor Tu GTP binding domain CO731_00054 PF06421 GTP-binding protein LepA C-terminus CO731_00063 PF01541 GIY-YIG catalytic domain CO731_00067 PF01569 PAP2 superfamily CO731_00069 PF00916 Sulfate permease family CO731_00069 PF01740 STAS domain CO731_00070 PF00012 Hsp70 protein CO731_00071 PF01810 LysE type translocator CO731_00072 PF00291 Pyridoxal-phosphate dependent enzyme CO731_00074 PF03795 YCII-related domain CO731_00083 PF00043 Glutathione S-transferase, C-terminal domain CO731_00083 PF02798 Glutathione S-transferase, N-terminal domain CO731_00086 PF16868 NMT1-like family CO731_00088 PF00005 ABC transporter CO731_00096 PF01628 HrcA protein C terminal domain CO731_00097 PF03725 3' exoribonuclease family, domain 2 CO731_00097 PF01138 3' exoribonuclease family, domain 1 CO731_00099 PF01725 Ham1 family CO731_00100 PF06969 HemN C-terminal domain CO731_00100 PF04055 Radical SAM superfamily CO731_00102 PF00892 EamA-like transporter family CO731_00103 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CO731_00104 PF02021 Uncharacterised protein family UPF0102 CO731_00106 PF00708 Acylphosphatase CO731_00107 PF04199 Putative cyclase CO731_00108 PF00067 Cytochrome P450 CO731_00111 PF13581 Histidine kinase-like ATPase domain CO731_00111 PF07536 HWE histidine kinase CO731_00111 PF13426 PAS domain CO731_00112 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_00112 PF01751 Toprim domain CO731_00112 PF00986 DNA gyrase B subunit, carboxyl terminus CO731_00112 PF00204 DNA gyrase B CO731_00114 PF00557 Metallopeptidase family M24 CO731_00115 PF00072 Response regulator receiver domain CO731_00115 PF00486 Transcriptional regulatory protein, C terminal CO731_00116 PF00072 Response regulator receiver domain CO731_00116 PF00486 Transcriptional regulatory protein, C terminal CO731_00117 PF13493 Domain of unknown function (DUF4118) CO731_00117 PF02702 Osmosensitive K+ channel His kinase sensor domain CO731_00117 PF00512 His Kinase A (phospho-acceptor) domain CO731_00117 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_00117 PF13492 GAF domain CO731_00118 PF02669 K+-transporting ATPase, c chain CO731_00120 PF03814 Potassium-transporting ATPase A subunit CO731_00122 PF00043 Glutathione S-transferase, C-terminal domain CO731_00122 PF02798 Glutathione S-transferase, N-terminal domain CO731_00123 PF02441 Flavoprotein CO731_00123 PF04127 DNA / pantothenate metabolism flavoprotein CO731_00124 PF01850 PIN domain CO731_00126 PF03109 ABC1 family CO731_00127 PF01209 ubiE/COQ5 methyltransferase family CO731_00128 PF00962 Adenosine/AMP deaminase CO731_00131 PF02311 AraC-like ligand binding domain CO731_00131 PF12833 Helix-turn-helix domain CO731_00132 PF07690 Major Facilitator Superfamily CO731_00133 PF02885 Glycosyl transferase family, helical bundle domain CO731_00133 PF00591 Glycosyl transferase family, a/b domain CO731_00133 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CO731_00134 PF01048 Phosphorylase superfamily CO731_00135 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CO731_00139 PF04102 SlyX CO731_00142 PF01625 Peptide methionine sulfoxide reductase CO731_00147 PF03466 LysR substrate binding domain CO731_00147 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00148 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CO731_00150 PF03480 Bacterial extracellular solute-binding protein, family 7 CO731_00151 PF13378 Enolase C-terminal domain-like CO731_00151 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CO731_00153 PF00005 ABC transporter CO731_00153 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00154 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00154 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_00155 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00156 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_00158 PF01266 FAD dependent oxidoreductase CO731_00159 PF01546 Peptidase family M20/M25/M40 CO731_00159 PF07687 Peptidase dimerisation domain CO731_00160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_00162 PF00155 Aminotransferase class I and II CO731_00162 PF00392 Bacterial regulatory proteins, gntR family CO731_00165 PF00665 Integrase core domain CO731_00171 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CO731_00171 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CO731_00172 PF08125 Mannitol dehydrogenase C-terminal domain CO731_00172 PF01232 Mannitol dehydrogenase Rossmann domain CO731_00174 PF00005 ABC transporter CO731_00174 PF08402 TOBE domain CO731_00175 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00176 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00178 PF04198 Putative sugar-binding domain CO731_00179 PF02566 OsmC-like protein CO731_00180 PF08298 PrkA AAA domain CO731_00180 PF06798 PrkA serine protein kinase C-terminal domain CO731_00181 PF04285 Protein of unknown function (DUF444) CO731_00182 PF04293 SpoVR like protein CO731_00183 PF03932 CutC family CO731_00184 PF00480 ROK family CO731_00185 PF00356 Bacterial regulatory proteins, lacI family CO731_00186 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_00187 PF01112 Asparaginase CO731_00188 PF00005 ABC transporter CO731_00189 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00190 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00192 PF00990 Diguanylate cyclase, GGDEF domain CO731_00192 PF17151 Periplasmic sensor domain CO731_00195 PF02321 Outer membrane efflux protein CO731_00196 PF03412 Peptidase C39 family CO731_00196 PF00005 ABC transporter CO731_00196 PF00664 ABC transporter transmembrane region CO731_00202 PF10576 Iron-sulfur binding domain of endonuclease III CO731_00202 PF00633 Helix-hairpin-helix motif CO731_00202 PF00730 HhH-GPD superfamily base excision DNA repair protein CO731_00204 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CO731_00204 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CO731_00205 PF00294 pfkB family carbohydrate kinase CO731_00206 PF01810 LysE type translocator CO731_00207 PF01156 Inosine-uridine preferring nucleoside hydrolase CO731_00208 PF00011 Hsp20/alpha crystallin family CO731_00210 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CO731_00211 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CO731_00211 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CO731_00212 PF04963 Sigma-54 factor, core binding domain CO731_00212 PF00309 Sigma-54 factor, Activator interacting domain (AID) CO731_00212 PF04552 Sigma-54, DNA binding domain CO731_00213 PF00005 ABC transporter CO731_00214 PF03968 OstA-like protein CO731_00216 PF01343 Peptidase family S49 CO731_00217 PF00216 Bacterial DNA-binding protein CO731_00219 PF02423 Ornithine cyclodeaminase/mu-crystallin family CO731_00220 PF01170 Putative RNA methylase family UPF0020 CO731_00220 PF02926 THUMP domain CO731_00220 PF10672 S-adenosylmethionine-dependent methyltransferase CO731_00221 PF00588 SpoU rRNA Methylase family CO731_00222 PF01252 Signal peptidase (SPase) II CO731_00224 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CO731_00224 PF01627 Hpt domain CO731_00224 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_00224 PF00672 HAMP domain CO731_00224 PF00072 Response regulator receiver domain CO731_00224 PF00512 His Kinase A (phospho-acceptor) domain CO731_00228 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_00229 PF03458 UPF0126 domain CO731_00230 PF01025 GrpE CO731_00233 PF01507 Phosphoadenosine phosphosulfate reductase family CO731_00234 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CO731_00234 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CO731_00236 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CO731_00236 PF14824 Sirohaem biosynthesis protein central CO731_00236 PF10414 Sirohaem synthase dimerisation region CO731_00238 PF02254 TrkA-N domain CO731_00238 PF00999 Sodium/hydrogen exchanger family CO731_00240 PF01047 MarR family CO731_00242 PF00912 Transglycosylase CO731_00242 PF00905 Penicillin binding protein transpeptidase domain CO731_00245 PF12900 Pyridoxamine 5'-phosphate oxidase CO731_00249 PF00476 DNA polymerase family A CO731_00249 PF01612 3'-5' exonuclease CO731_00251 PF01367 5'-3' exonuclease, C-terminal SAM fold CO731_00251 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CO731_00251 PF00476 DNA polymerase family A CO731_00251 PF01612 3'-5' exonuclease CO731_00252 PF01810 LysE type translocator CO731_00254 PF00248 Aldo/keto reductase family CO731_00255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CO731_00255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CO731_00257 PF00356 Bacterial regulatory proteins, lacI family CO731_00257 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CO731_00258 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CO731_00258 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CO731_00259 PF01475 Ferric uptake regulator family CO731_00260 PF00356 Bacterial regulatory proteins, lacI family CO731_00261 PF01547 Bacterial extracellular solute-binding protein CO731_00262 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00263 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00264 PF00128 Alpha amylase, catalytic domain CO731_00265 PF17912 MalK OB fold domain CO731_00265 PF03459 TOBE domain CO731_00265 PF00005 ABC transporter CO731_00266 PF00950 ABC 3 transport family CO731_00267 PF00950 ABC 3 transport family CO731_00268 PF00005 ABC transporter CO731_00269 PF01297 Zinc-uptake complex component A periplasmic CO731_00272 PF05922 Peptidase inhibitor I9 CO731_00272 PF00082 Subtilase family CO731_00274 PF04542 Sigma-70 region 2 CO731_00274 PF08281 Sigma-70, region 4 CO731_00275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00275 PF00005 ABC transporter CO731_00276 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00276 PF00005 ABC transporter CO731_00278 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00279 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_00280 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CO731_00280 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CO731_00281 PF00440 Bacterial regulatory proteins, tetR family CO731_00281 PF13977 BetI-type transcriptional repressor, C-terminal CO731_00288 PF08241 Methyltransferase domain CO731_00298 PF02899 Phage integrase, N-terminal SAM-like domain CO731_00298 PF00589 Phage integrase family CO731_00299 PF00005 ABC transporter CO731_00299 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00300 PF00005 ABC transporter CO731_00301 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00302 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00303 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_00305 PF07690 Major Facilitator Superfamily CO731_00306 PF01545 Cation efflux family CO731_00306 PF16916 Dimerisation domain of Zinc Transporter CO731_00311 PF07690 Major Facilitator Superfamily CO731_00313 PF03824 High-affinity nickel-transport protein CO731_00315 PF09828 Chromate resistance exported protein CO731_00316 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CO731_00317 PF09828 Chromate resistance exported protein CO731_00318 PF02417 Chromate transporter CO731_00319 PF03466 LysR substrate binding domain CO731_00319 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00321 PF01042 Endoribonuclease L-PSP CO731_00322 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_00322 PF04324 BFD-like [2Fe-2S] binding domain CO731_00324 PF01266 FAD dependent oxidoreductase CO731_00326 PF03466 LysR substrate binding domain CO731_00326 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00327 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_00327 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00328 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00329 PF00005 ABC transporter CO731_00329 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00331 PF00665 Integrase core domain CO731_00332 PF00005 ABC transporter CO731_00332 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00333 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_00341 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00342 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00343 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_00344 PF00005 ABC transporter CO731_00347 PF13454 FAD-NAD(P)-binding CO731_00348 PF03466 LysR substrate binding domain CO731_00348 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00350 PF03824 High-affinity nickel-transport protein CO731_00354 PF02687 FtsX-like permease family CO731_00354 PF12704 MacB-like periplasmic core domain CO731_00354 PF00005 ABC transporter CO731_00361 PF02530 Porin subfamily CO731_00362 PF00005 ABC transporter CO731_00362 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00363 PF00005 ABC transporter CO731_00363 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00364 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00364 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_00365 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00366 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_00367 PF00155 Aminotransferase class I and II CO731_00371 PF03466 LysR substrate binding domain CO731_00371 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00373 PF03743 Bacterial conjugation TrbI-like protein CO731_00374 PF03524 Conjugal transfer protein CO731_00379 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO731_00381 PF04956 TrbC/VIRB2 family CO731_00382 PF00437 Type II/IV secretion system protein CO731_00384 PF02534 Type IV secretory system Conjugative DNA transfer CO731_00388 PF10502 Signal peptidase, peptidase S26 CO731_00398 PF05443 ROS/MUCR transcriptional regulator protein CO731_00399 PF05284 Protein of unknown function (DUF736) CO731_00400 PF00216 Bacterial DNA-binding protein CO731_00402 PF10137 Predicted nucleotide-binding protein containing TIR-like domain CO731_00403 PF00056 lactate/malate dehydrogenase, NAD binding domain CO731_00403 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CO731_00407 PF00589 Phage integrase family CO731_00409 PF01205 Uncharacterized protein family UPF0029 CO731_00415 PF02798 Glutathione S-transferase, N-terminal domain CO731_00415 PF00043 Glutathione S-transferase, C-terminal domain CO731_00416 PF00109 Beta-ketoacyl synthase, N-terminal domain CO731_00416 PF02801 Beta-ketoacyl synthase, C-terminal domain CO731_00417 PF00550 Phosphopantetheine attachment site CO731_00418 PF01774 UreD urease accessory protein CO731_00419 PF00547 Urease, gamma subunit CO731_00420 PF06906 Protein of unknown function (DUF1272) CO731_00421 PF00699 Urease beta subunit CO731_00422 PF00449 Urease alpha-subunit, N-terminal domain CO731_00422 PF01979 Amidohydrolase family CO731_00423 PF08534 Redoxin CO731_00425 PF05194 UreE urease accessory protein, C-terminal domain CO731_00425 PF02814 UreE urease accessory protein, N-terminal domain CO731_00426 PF01730 UreF CO731_00428 PF02492 CobW/HypB/UreG, nucleotide-binding domain CO731_00430 PF13419 Haloacid dehalogenase-like hydrolase CO731_00432 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00432 PF03466 LysR substrate binding domain CO731_00433 PF01554 MatE CO731_00435 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00436 PF00005 ABC transporter CO731_00438 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00439 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00440 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_00441 PF00491 Arginase family CO731_00442 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00442 PF03466 LysR substrate binding domain CO731_00443 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CO731_00443 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CO731_00445 PF13458 Periplasmic binding protein CO731_00446 PF02653 Branched-chain amino acid transport system / permease component CO731_00448 PF00005 ABC transporter CO731_00448 PF12857 TOBE-like domain CO731_00448 PF17850 CysA C-terminal regulatory domain CO731_00449 PF00005 ABC transporter CO731_00451 PF00857 Isochorismatase family CO731_00453 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CO731_00453 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CO731_00454 PF00037 4Fe-4S binding domain CO731_00457 PF12802 MarR family CO731_00458 PF00171 Aldehyde dehydrogenase family CO731_00459 PF01791 DeoC/LacD family aldolase CO731_00460 PF00970 Oxidoreductase FAD-binding domain CO731_00460 PF00175 Oxidoreductase NAD-binding domain CO731_00461 PF05378 Hydantoinase/oxoprolinase N-terminal region CO731_00461 PF01968 Hydantoinase/oxoprolinase CO731_00462 PF02538 Hydantoinase B/oxoprolinase CO731_00463 PF00005 ABC transporter CO731_00463 PF08402 TOBE domain CO731_00464 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CO731_00464 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CO731_00465 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00468 PF13580 SIS domain CO731_00469 PF01869 BadF/BadG/BcrA/BcrD ATPase family CO731_00470 PF00392 Bacterial regulatory proteins, gntR family CO731_00470 PF07702 UTRA domain CO731_00471 PF01380 SIS domain CO731_00472 PF01979 Amidohydrolase family CO731_00473 PF00834 Ribulose-phosphate 3 epimerase family CO731_00476 PF13407 Periplasmic binding protein domain CO731_00477 PF00005 ABC transporter CO731_00478 PF02653 Branched-chain amino acid transport system / permease component CO731_00479 PF02653 Branched-chain amino acid transport system / permease component CO731_00480 PF00356 Bacterial regulatory proteins, lacI family CO731_00481 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CO731_00481 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CO731_00482 PF00294 pfkB family carbohydrate kinase CO731_00484 PF04542 Sigma-70 region 2 CO731_00484 PF08281 Sigma-70, region 4 CO731_00485 PF03795 YCII-related domain CO731_00486 PF00202 Aminotransferase class-III CO731_00487 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_00487 PF14759 Reductase C-terminal CO731_00490 PF00210 Ferritin-like domain CO731_00495 PF03144 Elongation factor Tu domain 2 CO731_00495 PF00009 Elongation factor Tu GTP binding domain CO731_00495 PF16658 Class II release factor RF3, C-terminal domain CO731_00496 PF08713 DNA alkylation repair enzyme CO731_00502 PF13230 Glutamine amidotransferases class-II CO731_00503 PF00692 dUTPase CO731_00504 PF13419 Haloacid dehalogenase-like hydrolase CO731_00507 PF00294 pfkB family carbohydrate kinase CO731_00510 PF01515 Phosphate acetyl/butaryl transferase CO731_00510 PF00390 Malic enzyme, N-terminal domain CO731_00510 PF03949 Malic enzyme, NAD binding domain CO731_00511 PF01624 MutS domain I CO731_00511 PF05188 MutS domain II CO731_00511 PF00488 MutS domain V CO731_00511 PF05190 MutS family domain IV CO731_00511 PF05192 MutS domain III CO731_00521 PF06441 Epoxide hydrolase N terminus CO731_00522 PF12833 Helix-turn-helix domain CO731_00522 PF07883 Cupin domain CO731_00524 PF17932 Tetracyclin repressor-like, C-terminal domain CO731_00524 PF00440 Bacterial regulatory proteins, tetR family CO731_00528 PF08448 PAS fold CO731_00528 PF00990 Diguanylate cyclase, GGDEF domain CO731_00528 PF00563 EAL domain CO731_00530 PF00248 Aldo/keto reductase family CO731_00532 PF04945 YHS domain CO731_00533 PF01966 HD domain CO731_00533 PF08335 GlnD PII-uridylyltransferase CO731_00533 PF01909 Nucleotidyltransferase domain CO731_00533 PF01842 ACT domain CO731_00534 PF03023 Lipid II flippase MurJ CO731_00535 PF00579 tRNA synthetases class I (W and Y) CO731_00537 PF01106 NifU-like domain CO731_00538 PF03734 L,D-transpeptidase catalytic domain CO731_00538 PF17969 L,D-transpeptidase C-terminal domain CO731_00540 PF00072 Response regulator receiver domain CO731_00541 PF00512 His Kinase A (phospho-acceptor) domain CO731_00541 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_00542 PF08482 ATP-dependent helicase C-terminal CO731_00542 PF04408 Helicase associated domain (HA2) CO731_00542 PF00271 Helicase conserved C-terminal domain CO731_00542 PF00270 DEAD/DEAH box helicase CO731_00547 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CO731_00547 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CO731_00548 PF01380 SIS domain CO731_00548 PF01418 Helix-turn-helix domain, rpiR family CO731_00549 PF00920 Dehydratase family CO731_00550 PF00291 Pyridoxal-phosphate dependent enzyme CO731_00550 PF00571 CBS domain CO731_00551 PF01053 Cys/Met metabolism PLP-dependent enzyme CO731_00552 PF01047 MarR family CO731_00553 PF00892 EamA-like transporter family CO731_00554 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00555 PF00005 ABC transporter CO731_00556 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CO731_00558 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CO731_00559 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CO731_00560 PF00873 AcrB/AcrD/AcrF family CO731_00561 PF00005 ABC transporter CO731_00561 PF12399 Branched-chain amino acid ATP-binding cassette transporter CO731_00562 PF12399 Branched-chain amino acid ATP-binding cassette transporter CO731_00562 PF00005 ABC transporter CO731_00563 PF02653 Branched-chain amino acid transport system / permease component CO731_00565 PF13458 Periplasmic binding protein CO731_00566 PF01494 FAD binding domain CO731_00567 PF00206 Lyase CO731_00567 PF10397 Adenylosuccinate lyase C-terminus CO731_00568 PF00775 Dioxygenase CO731_00569 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal CO731_00569 PF00775 Dioxygenase CO731_00570 PF02627 Carboxymuconolactone decarboxylase family CO731_00571 PF12146 Serine aminopeptidase, S33 CO731_00572 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00572 PF03466 LysR substrate binding domain CO731_00574 PF00202 Aminotransferase class-III CO731_00575 PF07729 FCD domain CO731_00575 PF00392 Bacterial regulatory proteins, gntR family CO731_00576 PF01266 FAD dependent oxidoreductase CO731_00577 PF00171 Aldehyde dehydrogenase family CO731_00578 PF01037 Lrp/AsnC ligand binding domain CO731_00579 PF01168 Alanine racemase, N-terminal domain CO731_00579 PF00842 Alanine racemase, C-terminal domain CO731_00580 PF01266 FAD dependent oxidoreductase CO731_00582 PF01464 Transglycosylase SLT domain CO731_00582 PF01551 Peptidase family M23 CO731_00582 PF10145 Phage-related minor tail protein CO731_00587 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CO731_00587 PF01842 ACT domain CO731_00587 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CO731_00589 PF17042 Nucleotide-binding C-terminal domain CO731_00589 PF07005 Sugar-binding N-terminal domain CO731_00590 PF00005 ABC transporter CO731_00590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00591 PF00005 ABC transporter CO731_00591 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00593 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00594 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_00595 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CO731_00596 PF00701 Dihydrodipicolinate synthetase family CO731_00598 PF00465 Iron-containing alcohol dehydrogenase CO731_00600 PF00005 ABC transporter CO731_00603 PF02653 Branched-chain amino acid transport system / permease component CO731_00604 PF00005 ABC transporter CO731_00604 PF12399 Branched-chain amino acid ATP-binding cassette transporter CO731_00605 PF00501 AMP-binding enzyme CO731_00607 PF03741 Integral membrane protein TerC family CO731_00616 PF01968 Hydantoinase/oxoprolinase CO731_00616 PF05378 Hydantoinase/oxoprolinase N-terminal region CO731_00619 PF00155 Aminotransferase class I and II CO731_00620 PF00107 Zinc-binding dehydrogenase CO731_00620 PF08240 Alcohol dehydrogenase GroES-like domain CO731_00622 PF00005 ABC transporter CO731_00622 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00623 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_00623 PF00005 ABC transporter CO731_00624 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_00624 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00625 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00626 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_00627 PF01177 Asp/Glu/Hydantoin racemase CO731_00628 PF07729 FCD domain CO731_00628 PF00392 Bacterial regulatory proteins, gntR family CO731_00631 PF01274 Malate synthase CO731_00632 PF01738 Dienelactone hydrolase family CO731_00633 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_00634 PF00067 Cytochrome P450 CO731_00637 PF00593 TonB dependent receptor CO731_00637 PF07715 TonB-dependent Receptor Plug Domain CO731_00639 PF01032 FecCD transport family CO731_00640 PF00005 ABC transporter CO731_00642 PF01618 MotA/TolQ/ExbB proton channel family CO731_00643 PF02472 Biopolymer transport protein ExbD/TolR CO731_00647 PF07715 TonB-dependent Receptor Plug Domain CO731_00647 PF00593 TonB dependent receptor CO731_00649 PF06276 Ferric iron reductase FhuF-like transporter CO731_00649 PF04183 IucA / IucC family CO731_00650 PF04183 IucA / IucC family CO731_00650 PF06276 Ferric iron reductase FhuF-like transporter CO731_00651 PF00501 AMP-binding enzyme CO731_00651 PF13193 AMP-binding enzyme C-terminal domain CO731_00653 PF01261 Xylose isomerase-like TIM barrel CO731_00654 PF01497 Periplasmic binding protein CO731_00655 PF01032 FecCD transport family CO731_00656 PF01032 FecCD transport family CO731_00657 PF00005 ABC transporter CO731_00658 PF00171 Aldehyde dehydrogenase family CO731_00659 PF12146 Serine aminopeptidase, S33 CO731_00660 PF00005 ABC transporter CO731_00661 PF12399 Branched-chain amino acid ATP-binding cassette transporter CO731_00661 PF00005 ABC transporter CO731_00663 PF02653 Branched-chain amino acid transport system / permease component CO731_00665 PF07690 Major Facilitator Superfamily CO731_00666 PF00106 short chain dehydrogenase CO731_00667 PF00970 Oxidoreductase FAD-binding domain CO731_00667 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_00667 PF00175 Oxidoreductase NAD-binding domain CO731_00668 PF00866 Ring hydroxylating beta subunit CO731_00669 PF00355 Rieske [2Fe-2S] domain CO731_00669 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CO731_00670 PF00775 Dioxygenase CO731_00670 PF04444 Catechol dioxygenase N terminus CO731_00671 PF02426 Muconolactone delta-isomerase CO731_00672 PF13378 Enolase C-terminal domain-like CO731_00672 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CO731_00673 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00673 PF03466 LysR substrate binding domain CO731_00675 PF01758 Sodium Bile acid symporter family CO731_00676 PF03960 ArsC family CO731_00677 PF03358 NADPH-dependent FMN reductase CO731_00679 PF13495 Phage integrase, N-terminal SAM-like domain CO731_00679 PF00589 Phage integrase family CO731_00680 PF14319 Transposase zinc-binding domain CO731_00680 PF04986 Putative transposase CO731_00695 PF01555 DNA methylase CO731_00695 PF18755 Restriction Enzyme Adenine Methylase Associated CO731_00699 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CO731_00700 PF01979 Amidohydrolase family CO731_00701 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00701 PF03466 LysR substrate binding domain CO731_00704 PF00589 Phage integrase family CO731_00705 PF02899 Phage integrase, N-terminal SAM-like domain CO731_00705 PF00589 Phage integrase family CO731_00707 PF13007 Transposase C of IS166 homeodomain CO731_00707 PF13817 IS66 C-terminal element CO731_00707 PF13005 zinc-finger binding domain of transposase IS66 CO731_00707 PF03050 Transposase IS66 family CO731_00708 PF00665 Integrase core domain CO731_00708 PF13276 HTH-like domain CO731_00708 PF13333 Integrase core domain CO731_00711 PF05717 IS66 Orf2 like protein CO731_00714 PF00557 Metallopeptidase family M24 CO731_00714 PF01321 Creatinase/Prolidase N-terminal domain CO731_00716 PF00005 ABC transporter CO731_00717 PF02653 Branched-chain amino acid transport system / permease component CO731_00722 PF03050 Transposase IS66 family CO731_00722 PF13007 Transposase C of IS166 homeodomain CO731_00722 PF13005 zinc-finger binding domain of transposase IS66 CO731_00722 PF13817 IS66 C-terminal element CO731_00724 PF00665 Integrase core domain CO731_00726 PF17806 Sarcosine oxidase A3 domain CO731_00726 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_00726 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_00726 PF01571 Aminomethyltransferase folate-binding domain CO731_00728 PF01266 FAD dependent oxidoreductase CO731_00729 PF12833 Helix-turn-helix domain CO731_00729 PF02311 AraC-like ligand binding domain CO731_00733 PF01548 Transposase CO731_00733 PF02371 Transposase IS116/IS110/IS902 family CO731_00734 PF01548 Transposase CO731_00734 PF02371 Transposase IS116/IS110/IS902 family CO731_00735 PF02371 Transposase IS116/IS110/IS902 family CO731_00735 PF01548 Transposase CO731_00738 PF08402 TOBE domain CO731_00738 PF00005 ABC transporter CO731_00740 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00742 PF03466 LysR substrate binding domain CO731_00742 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00743 PF02633 Creatinine amidohydrolase CO731_00744 PF00557 Metallopeptidase family M24 CO731_00744 PF01321 Creatinase/Prolidase N-terminal domain CO731_00748 PF00491 Arginase family CO731_00750 PF03466 LysR substrate binding domain CO731_00750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00752 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00752 PF03466 LysR substrate binding domain CO731_00753 PF02423 Ornithine cyclodeaminase/mu-crystallin family CO731_00755 PF00291 Pyridoxal-phosphate dependent enzyme CO731_00756 PF00266 Aminotransferase class-V CO731_00758 PF01979 Amidohydrolase family CO731_00759 PF08402 TOBE domain CO731_00759 PF00005 ABC transporter CO731_00761 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00766 PF00239 Resolvase, N terminal domain CO731_00766 PF02796 Helix-turn-helix domain of resolvase CO731_00769 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CO731_00771 PF02224 Cytidylate kinase CO731_00772 PF00575 S1 RNA binding domain CO731_00775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CO731_00775 PF00205 Thiamine pyrophosphate enzyme, central domain CO731_00775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CO731_00776 PF00440 Bacterial regulatory proteins, tetR family CO731_00776 PF13977 BetI-type transcriptional repressor, C-terminal CO731_00777 PF00005 ABC transporter CO731_00778 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_00779 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00780 PF00528 Binding-protein-dependent transport system inner membrane component CO731_00781 PF02615 Malate/L-lactate dehydrogenase CO731_00783 PF05532 CsbD-like CO731_00785 PF01370 NAD dependent epimerase/dehydratase family CO731_00786 PF02673 Bacitracin resistance protein BacA CO731_00787 PF00043 Glutathione S-transferase, C-terminal domain CO731_00787 PF13417 Glutathione S-transferase, N-terminal domain CO731_00788 PF08331 Domain of unknown function (DUF1730) CO731_00790 PF03411 Penicillin-insensitive murein endopeptidase CO731_00791 PF02142 MGS-like domain CO731_00792 PF02685 Glucokinase CO731_00793 PF00664 ABC transporter transmembrane region CO731_00793 PF00005 ABC transporter CO731_00794 PF01113 Dihydrodipicolinate reductase, N-terminus CO731_00794 PF05173 Dihydrodipicolinate reductase, C-terminus CO731_00795 PF00300 Histidine phosphatase superfamily (branch 1) CO731_00797 PF00535 Glycosyl transferase family 2 CO731_00798 PF03631 Virulence factor BrkB CO731_00803 PF03330 Lytic transglycolase CO731_00805 PF08450 SMP-30/Gluconolactonase/LRE-like region CO731_00806 PF01081 KDPG and KHG aldolase CO731_00807 PF05035 2-keto-3-deoxy-galactonokinase CO731_00809 PF08448 PAS fold CO731_00809 PF08447 PAS fold CO731_00809 PF00990 Diguanylate cyclase, GGDEF domain CO731_00809 PF00563 EAL domain CO731_00810 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CO731_00810 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CO731_00811 PF07690 Major Facilitator Superfamily CO731_00812 PF00563 EAL domain CO731_00812 PF00990 Diguanylate cyclase, GGDEF domain CO731_00812 PF13426 PAS domain CO731_00813 PF13335 Magnesium chelatase, subunit ChlI C-terminal CO731_00813 PF01078 Magnesium chelatase, subunit ChlI CO731_00851 PF00772 DnaB-like helicase N terminal domain CO731_00851 PF03796 DnaB-like helicase C terminal domain CO731_00858 PF02899 Phage integrase, N-terminal SAM-like domain CO731_00858 PF00589 Phage integrase family CO731_00859 PF13335 Magnesium chelatase, subunit ChlI C-terminal CO731_00859 PF01078 Magnesium chelatase, subunit ChlI CO731_00864 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CO731_00865 PF03358 NADPH-dependent FMN reductase CO731_00866 PF13649 Methyltransferase domain CO731_00867 PF01556 DnaJ C terminal domain CO731_00867 PF00226 DnaJ domain CO731_00867 PF00684 DnaJ central domain CO731_00868 PF00012 Hsp70 protein CO731_00869 PF01435 Peptidase family M48 CO731_00871 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CO731_00871 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CO731_00874 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CO731_00874 PF03484 tRNA synthetase B5 domain CO731_00874 PF03483 B3/4 domain CO731_00874 PF01588 Putative tRNA binding domain CO731_00874 PF03147 Ferredoxin-fold anticodon binding domain CO731_00876 PF01409 tRNA synthetases class II core domain (F) CO731_00876 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CO731_00877 PF00453 Ribosomal protein L20 CO731_00878 PF01632 Ribosomal protein L35 CO731_00879 PF04191 Phospholipid methyltransferase CO731_00880 PF05198 Translation initiation factor IF-3, N-terminal domain CO731_00880 PF00707 Translation initiation factor IF-3, C-terminal domain CO731_00882 PF03594 Benzoate membrane transport protein CO731_00885 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CO731_00886 PF00291 Pyridoxal-phosphate dependent enzyme CO731_00887 PF00290 Tryptophan synthase alpha chain CO731_00888 PF01039 Carboxyl transferase domain CO731_00889 PF08245 Mur ligase middle domain CO731_00889 PF02875 Mur ligase family, glutamate ligase domain CO731_00890 PF00085 Thioredoxin CO731_00891 PF13361 UvrD-like helicase C-terminal domain CO731_00891 PF00580 UvrD/REP helicase N-terminal domain CO731_00891 PF12705 PD-(D/E)XK nuclease superfamily CO731_00892 PF12705 PD-(D/E)XK nuclease superfamily CO731_00893 PF12804 MobA-like NTP transferase domain CO731_00894 PF01636 Phosphotransferase enzyme family CO731_00895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_00895 PF00512 His Kinase A (phospho-acceptor) domain CO731_00896 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CO731_00896 PF05221 S-adenosyl-L-homocysteine hydrolase CO731_00897 PF00381 PTS HPr component phosphorylation site CO731_00898 PF03830 PTS system sorbose subfamily IIB component CO731_00898 PF03610 PTS system fructose IIA component CO731_00900 PF00672 HAMP domain CO731_00900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_00900 PF13755 Sensor N-terminal transmembrane domain CO731_00900 PF13756 Stimulus-sensing domain CO731_00900 PF00512 His Kinase A (phospho-acceptor) domain CO731_00901 PF00486 Transcriptional regulatory protein, C terminal CO731_00901 PF00072 Response regulator receiver domain CO731_00902 PF01293 Phosphoenolpyruvate carboxykinase CO731_00903 PF00472 RF-1 domain CO731_00904 PF04972 BON domain CO731_00904 PF01476 LysM domain CO731_00905 PF13532 2OG-Fe(II) oxygenase superfamily CO731_00906 PF00485 Phosphoribulokinase / Uridine kinase family CO731_00907 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CO731_00908 PF00977 Histidine biosynthesis protein CO731_00909 PF00977 Histidine biosynthesis protein CO731_00910 PF00117 Glutamine amidotransferase class-I CO731_00912 PF00475 Imidazoleglycerol-phosphate dehydratase CO731_00913 PF00227 Proteasome subunit CO731_00915 PF10755 Protein of unknown function (DUF2585) CO731_00917 PF10431 C-terminal, D2-small domain, of ClpB protein CO731_00917 PF07724 AAA domain (Cdc48 subfamily) CO731_00917 PF00004 ATPase family associated with various cellular activities (AAA) CO731_00919 PF01381 Helix-turn-helix CO731_00919 PF06114 IrrE N-terminal-like domain CO731_00919 PF09856 Predicted transcriptional regulator (DUF2083) CO731_00923 PF04186 FxsA cytoplasmic membrane protein CO731_00924 PF02556 Preprotein translocase subunit SecB CO731_00925 PF00929 Exonuclease CO731_00926 PF01121 Dephospho-CoA kinase CO731_00927 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CO731_00927 PF08501 Shikimate dehydrogenase substrate binding domain CO731_00927 PF01488 Shikimate / quinate 5-dehydrogenase CO731_00928 PF02545 Maf-like protein CO731_00929 PF03618 Kinase/pyrophosphorylase CO731_00930 PF01208 Uroporphyrinogen decarboxylase (URO-D) CO731_00932 PF07497 Rho termination factor, RNA-binding domain CO731_00932 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO731_00932 PF07498 Rho termination factor, N-terminal domain CO731_00933 PF03190 Protein of unknown function, DUF255 CO731_00934 PF12631 MnmE helical domain CO731_00934 PF10396 GTP-binding protein TrmE N-terminus CO731_00934 PF01926 50S ribosome-binding GTPase CO731_00935 PF13932 GidA associated domain CO731_00935 PF01134 Glucose inhibited division protein A CO731_00936 PF02527 rRNA small subunit methyltransferase G CO731_00937 PF13614 AAA domain CO731_00938 PF02195 ParB-like nuclease domain CO731_00938 PF17762 HTH domain found in ParB protein CO731_00940 PF03597 Cytochrome oxidase maturation protein cbb3-type CO731_00942 PF05751 FixH CO731_00943 PF13746 4Fe-4S dicluster domain CO731_00943 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CO731_00943 PF12801 4Fe-4S binding domain CO731_00944 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CO731_00944 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CO731_00947 PF00115 Cytochrome C and Quinol oxidase polypeptide I CO731_00949 PF13545 Crp-like helix-turn-helix domain CO731_00949 PF00027 Cyclic nucleotide-binding domain CO731_00950 PF04055 Radical SAM superfamily CO731_00951 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CO731_00951 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CO731_00951 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CO731_00954 PF02785 Biotin carboxylase C-terminal domain CO731_00954 PF00289 Biotin carboxylase, N-terminal domain CO731_00954 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CO731_00954 PF00364 Biotin-requiring enzyme CO731_00955 PF01039 Carboxyl transferase domain CO731_00956 PF02632 BioY family CO731_00957 PF01381 Helix-turn-helix CO731_00957 PF06114 IrrE N-terminal-like domain CO731_00957 PF09856 Predicted transcriptional regulator (DUF2083) CO731_00959 PF17674 HHH domain CO731_00959 PF00575 S1 RNA binding domain CO731_00959 PF09371 Tex-like protein N-terminal domain CO731_00959 PF16921 Tex protein YqgF-like domain CO731_00960 PF00764 Arginosuccinate synthase CO731_00963 PF01593 Flavin containing amine oxidoreductase CO731_00966 PF00990 Diguanylate cyclase, GGDEF domain CO731_00966 PF00563 EAL domain CO731_00966 PF03707 Bacterial signalling protein N terminal repeat CO731_00967 PF00448 SRP54-type protein, GTPase domain CO731_00967 PF02881 SRP54-type protein, helical bundle domain CO731_00967 PF02978 Signal peptide binding domain CO731_00968 PF02153 Prephenate dehydrogenase CO731_00968 PF01817 Chorismate mutase type II CO731_00969 PF00886 Ribosomal protein S16 CO731_00971 PF01062 Bestrophin, RFP-TM, chloride channel CO731_00973 PF01118 Semialdehyde dehydrogenase, NAD binding domain CO731_00973 PF02774 Semialdehyde dehydrogenase, dimerisation domain CO731_00977 PF00005 ABC transporter CO731_00977 PF06472 ABC transporter transmembrane region 2 CO731_00978 PF05656 Protein of unknown function (DUF805) CO731_00979 PF00180 Isocitrate/isopropylmalate dehydrogenase CO731_00982 PF01042 Endoribonuclease L-PSP CO731_00984 PF00694 Aconitase C-terminal domain CO731_00985 PF01497 Periplasmic binding protein CO731_00986 PF01032 FecCD transport family CO731_00987 PF01032 FecCD transport family CO731_00988 PF00005 ABC transporter CO731_00990 PF00248 Aldo/keto reductase family CO731_00991 PF07690 Major Facilitator Superfamily CO731_00992 PF03466 LysR substrate binding domain CO731_00992 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_00996 PF01565 FAD binding domain CO731_00996 PF08031 Berberine and berberine like CO731_01000 PF04542 Sigma-70 region 2 CO731_01000 PF08281 Sigma-70, region 4 CO731_01003 PF00313 'Cold-shock' DNA-binding domain CO731_01006 PF01266 FAD dependent oxidoreductase CO731_01007 PF03328 HpcH/HpaI aldolase/citrate lyase family CO731_01012 PF02811 PHP domain CO731_01012 PF07733 Bacterial DNA polymerase III alpha NTPase domain CO731_01012 PF01336 OB-fold nucleic acid binding domain CO731_01012 PF14579 Helix-hairpin-helix motif CO731_01012 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CO731_01013 PF03966 Trm112p-like protein CO731_01014 PF02190 ATP-dependent protease La (LON) substrate-binding domain CO731_01014 PF05362 Lon protease (S16) C-terminal proteolytic domain CO731_01014 PF00004 ATPase family associated with various cellular activities (AAA) CO731_01015 PF00085 Thioredoxin CO731_01019 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CO731_01019 PF13378 Enolase C-terminal domain-like CO731_01020 PF01557 Fumarylacetoacetate (FAA) hydrolase family CO731_01022 PF02653 Branched-chain amino acid transport system / permease component CO731_01023 PF00005 ABC transporter CO731_01027 PF05025 RbsD / FucU transport protein family CO731_01028 PF00005 ABC transporter CO731_01028 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_01029 PF00005 ABC transporter CO731_01029 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_01030 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01030 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_01031 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01032 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_01033 PF01244 Membrane dipeptidase (Peptidase family M19) CO731_01034 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CO731_01034 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CO731_01037 PF04055 Radical SAM superfamily CO731_01039 PF00583 Acetyltransferase (GNAT) family CO731_01041 PF06803 Protein of unknown function (DUF1232) CO731_01042 PF01329 Pterin 4 alpha carbinolamine dehydratase CO731_01043 PF01451 Low molecular weight phosphotyrosine protein phosphatase CO731_01044 PF02834 LigT like Phosphoesterase CO731_01045 PF13472 GDSL-like Lipase/Acylhydrolase family CO731_01046 PF00005 ABC transporter CO731_01048 PF01027 Inhibitor of apoptosis-promoting Bax1 CO731_01051 PF00171 Aldehyde dehydrogenase family CO731_01052 PF05544 Proline racemase CO731_01056 PF00563 EAL domain CO731_01056 PF13188 PAS domain CO731_01056 PF03707 Bacterial signalling protein N terminal repeat CO731_01056 PF00990 Diguanylate cyclase, GGDEF domain CO731_01058 PF00850 Histone deacetylase domain CO731_01063 PF03969 AFG1-like ATPase CO731_01064 PF02974 Protease inhibitor Inh CO731_01065 PF01678 Diaminopimelate epimerase CO731_01066 PF04055 Radical SAM superfamily CO731_01066 PF00919 Uncharacterized protein family UPF0004 CO731_01067 PF02881 SRP54-type protein, helical bundle domain CO731_01067 PF00448 SRP54-type protein, GTPase domain CO731_01068 PF04279 Intracellular septation protein A CO731_01071 PF08534 Redoxin CO731_01073 PF03379 CcmB protein CO731_01074 PF00005 ABC transporter CO731_01075 PF00694 Aconitase C-terminal domain CO731_01075 PF00330 Aconitase family (aconitate hydratase) CO731_01076 PF00056 lactate/malate dehydrogenase, NAD binding domain CO731_01076 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CO731_01077 PF08442 ATP-grasp domain CO731_01077 PF00549 CoA-ligase CO731_01078 PF02629 CoA binding domain CO731_01078 PF00549 CoA-ligase CO731_01079 PF16870 2-oxoglutarate dehydrogenase C-terminal CO731_01079 PF02779 Transketolase, pyrimidine binding domain CO731_01079 PF16078 2-oxoglutarate dehydrogenase N-terminus CO731_01079 PF00676 Dehydrogenase E1 component CO731_01080 PF00364 Biotin-requiring enzyme CO731_01080 PF02817 e3 binding domain CO731_01080 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CO731_01083 PF01810 LysE type translocator CO731_01086 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO731_01086 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_01089 PF00589 Phage integrase family CO731_01089 PF02899 Phage integrase, N-terminal SAM-like domain CO731_01090 PF05239 PRC-barrel domain CO731_01090 PF01782 RimM N-terminal domain CO731_01093 PF01746 tRNA (Guanine-1)-methyltransferase CO731_01096 PF01925 Sulfite exporter TauE/SafE CO731_01097 PF01245 Ribosomal protein L19 CO731_01098 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_01099 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01100 PF13649 Methyltransferase domain CO731_01101 PF02308 MgtC family CO731_01103 PF00330 Aconitase family (aconitate hydratase) CO731_01104 PF00990 Diguanylate cyclase, GGDEF domain CO731_01106 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CO731_01108 PF00890 FAD binding domain CO731_01108 PF02910 Fumarate reductase flavoprotein C-term CO731_01110 PF13085 2Fe-2S iron-sulfur cluster binding domain CO731_01110 PF13237 4Fe-4S dicluster domain CO731_01111 PF00534 Glycosyl transferases group 1 CO731_01111 PF13439 Glycosyltransferase Family 4 CO731_01112 PF04337 Protein of unknown function, DUF480 CO731_01113 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CO731_01113 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CO731_01114 PF12833 Helix-turn-helix domain CO731_01115 PF02566 OsmC-like protein CO731_01116 PF01494 FAD binding domain CO731_01118 PF00543 Nitrogen regulatory protein P-II CO731_01119 PF00909 Ammonium Transporter Family CO731_01124 PF17854 FtsK alpha domain CO731_01124 PF09397 Ftsk gamma domain CO731_01124 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CO731_01124 PF01580 FtsK/SpoIIIE family CO731_01125 PF03548 Outer membrane lipoprotein carrier protein LolA CO731_01128 PF00486 Transcriptional regulatory protein, C terminal CO731_01128 PF00072 Response regulator receiver domain CO731_01131 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_01131 PF03466 LysR substrate binding domain CO731_01135 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CO731_01135 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CO731_01136 PF00814 Glycoprotease family CO731_01137 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CO731_01137 PF03900 Porphobilinogen deaminase, C-terminal domain CO731_01142 PF00117 Glutamine amidotransferase class-I CO731_01145 PF01757 Acyltransferase family CO731_01147 PF00487 Fatty acid desaturase CO731_01149 PF00529 HlyD membrane-fusion protein of T1SS CO731_01149 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CO731_01150 PF00873 AcrB/AcrD/AcrF family CO731_01152 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01153 PF00005 ABC transporter CO731_01153 PF00571 CBS domain CO731_01155 PF00486 Transcriptional regulatory protein, C terminal CO731_01155 PF00072 Response regulator receiver domain CO731_01156 PF00072 Response regulator receiver domain CO731_01156 PF00486 Transcriptional regulatory protein, C terminal CO731_01157 PF00512 His Kinase A (phospho-acceptor) domain CO731_01157 PF00672 HAMP domain CO731_01157 PF17149 Periplasmic sensor domain found in signal transduction proteins CO731_01157 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_01157 PF00072 Response regulator receiver domain CO731_01157 PF01627 Hpt domain CO731_01158 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CO731_01159 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_01159 PF01571 Aminomethyltransferase folate-binding domain CO731_01160 PF00551 Formyl transferase CO731_01160 PF02911 Formyl transferase, C-terminal domain CO731_01161 PF00171 Aldehyde dehydrogenase family CO731_01165 PF13505 Outer membrane protein beta-barrel domain CO731_01168 PF02325 YGGT family CO731_01169 PF02594 Uncharacterised ACR, YggU family COG1872 CO731_01171 PF00719 Inorganic pyrophosphatase CO731_01175 PF04011 LemA family CO731_01177 PF08543 Phosphomethylpyrimidine kinase CO731_01180 PF07690 Major Facilitator Superfamily CO731_01181 PF01047 MarR family CO731_01182 PF01432 Peptidase family M3 CO731_01187 PF05088 Bacterial NAD-glutamate dehydrogenase CO731_01188 PF11700 Vacuole effluxer Atg22 like CO731_01189 PF02142 MGS-like domain CO731_01189 PF01808 AICARFT/IMPCHase bienzyme CO731_01191 PF01029 NusB family CO731_01191 PF01189 16S rRNA methyltransferase RsmB/F CO731_01192 PF01435 Peptidase family M48 CO731_01196 PF00501 AMP-binding enzyme CO731_01196 PF13193 AMP-binding enzyme C-terminal domain CO731_01196 PF16177 Acetyl-coenzyme A synthetase N-terminus CO731_01197 PF06233 Usg-like family CO731_01199 PF13458 Periplasmic binding protein CO731_01200 PF01850 PIN domain CO731_01202 PF01168 Alanine racemase, N-terminal domain CO731_01203 PF08264 Anticodon-binding domain of tRNA CO731_01203 PF00133 tRNA synthetases class I (I, L, M and V) CO731_01203 PF13603 Leucyl-tRNA synthetase, Domain 2 CO731_01207 PF01037 Lrp/AsnC ligand binding domain CO731_01208 PF00923 Transaldolase/Fructose-6-phosphate aldolase CO731_01209 PF18074 Primosomal protein N C-terminal domain CO731_01209 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CO731_01209 PF17764 3′ DNA-binding domain (3′BD) CO731_01209 PF00270 DEAD/DEAH box helicase CO731_01211 PF01850 PIN domain CO731_01214 PF00213 ATP synthase delta (OSCP) subunit CO731_01215 PF00306 ATP synthase alpha/beta chain, C terminal domain CO731_01215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO731_01215 PF02874 ATP synthase alpha/beta family, beta-barrel domain CO731_01216 PF00231 ATP synthase CO731_01217 PF02874 ATP synthase alpha/beta family, beta-barrel domain CO731_01217 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO731_01218 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CO731_01219 PF00483 Nucleotidyl transferase CO731_01220 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CO731_01221 PF16363 GDP-mannose 4,6 dehydratase CO731_01222 PF04321 RmlD substrate binding domain CO731_01224 PF14307 Glycosyltransferase WbsX CO731_01224 PF05045 Rhamnan synthesis protein F CO731_01226 PF05045 Rhamnan synthesis protein F CO731_01226 PF14307 Glycosyltransferase WbsX CO731_01227 PF00005 ABC transporter CO731_01227 PF17912 MalK OB fold domain CO731_01227 PF03459 TOBE domain CO731_01228 PF01979 Amidohydrolase family CO731_01229 PF01261 Xylose isomerase-like TIM barrel CO731_01231 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01234 PF00005 ABC transporter CO731_01234 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_01235 PF07969 Amidohydrolase family CO731_01236 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_01236 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01237 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01238 PF12793 Sugar transport-related sRNA regulator N-term CO731_01238 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_01239 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_01239 PF00005 ABC transporter CO731_01241 PF01177 Asp/Glu/Hydantoin racemase CO731_01244 PF00118 TCP-1/cpn60 chaperonin family CO731_01245 PF00166 Chaperonin 10 Kd subunit CO731_01249 PF00271 Helicase conserved C-terminal domain CO731_01249 PF09382 RQC domain CO731_01249 PF00570 HRDC domain CO731_01249 PF16124 RecQ zinc-binding CO731_01249 PF00270 DEAD/DEAH box helicase CO731_01250 PF13356 Arm DNA-binding domain CO731_01250 PF00589 Phage integrase family CO731_01267 PF00829 Ribosomal prokaryotic L21 protein CO731_01268 PF01016 Ribosomal L27 protein CO731_01271 PF01018 GTP1/OBG CO731_01271 PF01926 50S ribosome-binding GTPase CO731_01272 PF01472 PUA domain CO731_01272 PF00696 Amino acid kinase family CO731_01273 PF00171 Aldehyde dehydrogenase family CO731_01274 PF01467 Cytidylyltransferase-like CO731_01279 PF02590 Predicted SPOUT methyltransferase CO731_01280 PF01551 Peptidase family M23 CO731_01281 PF03572 Peptidase family S41 CO731_01281 PF13180 PDZ domain CO731_01283 PF00293 NUDIX domain CO731_01284 PF01272 Transcription elongation factor, GreA/GreB, C-term CO731_01284 PF14760 Rnk N-terminus CO731_01286 PF01266 FAD dependent oxidoreductase CO731_01290 PF00171 Aldehyde dehydrogenase family CO731_01293 PF00701 Dihydrodipicolinate synthetase family CO731_01294 PF01266 FAD dependent oxidoreductase CO731_01295 PF05544 Proline racemase CO731_01296 PF02653 Branched-chain amino acid transport system / permease component CO731_01297 PF02653 Branched-chain amino acid transport system / permease component CO731_01297 PF11862 Domain of unknown function (DUF3382) CO731_01298 PF12399 Branched-chain amino acid ATP-binding cassette transporter CO731_01298 PF00005 ABC transporter CO731_01299 PF00005 ABC transporter CO731_01301 PF13458 Periplasmic binding protein CO731_01302 PF02436 Conserved carboxylase domain CO731_01302 PF00682 HMGL-like CO731_01302 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CO731_01302 PF00364 Biotin-requiring enzyme CO731_01302 PF00289 Biotin carboxylase, N-terminal domain CO731_01302 PF02785 Biotin carboxylase C-terminal domain CO731_01304 PF07690 Major Facilitator Superfamily CO731_01306 PF00873 AcrB/AcrD/AcrF family CO731_01307 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CO731_01311 PF13649 Methyltransferase domain CO731_01312 PF04551 GcpE protein CO731_01313 PF01464 Transglycosylase SLT domain CO731_01313 PF14718 Soluble lytic murein transglycosylase L domain CO731_01314 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CO731_01316 PF00512 His Kinase A (phospho-acceptor) domain CO731_01316 PF01627 Hpt domain CO731_01316 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CO731_01316 PF00072 Response regulator receiver domain CO731_01316 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_01316 PF00672 HAMP domain CO731_01317 PF00348 Polyprenyl synthetase CO731_01318 PF00912 Transglycosylase CO731_01319 PF01783 Ribosomal L32p protein family CO731_01321 PF03928 Haem-degrading CO731_01322 PF05233 PHB accumulation regulatory domain CO731_01322 PF07879 PHB/PHA accumulation regulator DNA-binding domain CO731_01323 PF02803 Thiolase, C-terminal domain CO731_01323 PF00108 Thiolase, N-terminal domain CO731_01325 PF00230 Major intrinsic protein CO731_01328 PF11953 Domain of unknown function (DUF3470) CO731_01328 PF00037 4Fe-4S binding domain CO731_01329 PF02559 CarD-like/TRCF domain CO731_01330 PF00005 ABC transporter CO731_01332 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_01333 PF00140 Sigma-70 factor, region 1.2 CO731_01333 PF04542 Sigma-70 region 2 CO731_01333 PF04545 Sigma-70, region 4 CO731_01335 PF00005 ABC transporter CO731_01336 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01337 PF01547 Bacterial extracellular solute-binding protein CO731_01343 PF00709 Adenylosuccinate synthetase CO731_01345 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CO731_01345 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CO731_01345 PF01842 ACT domain CO731_01346 PF00266 Aminotransferase class-V CO731_01347 PF13505 Outer membrane protein beta-barrel domain CO731_01349 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CO731_01349 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CO731_01349 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CO731_01349 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CO731_01353 PF01434 Peptidase family M41 CO731_01353 PF00004 ATPase family associated with various cellular activities (AAA) CO731_01353 PF17862 AAA+ lid domain CO731_01353 PF06480 FtsH Extracellular CO731_01354 PF01171 PP-loop family CO731_01356 PF00691 OmpA family CO731_01357 PF04052 TolB amino-terminal domain CO731_01357 PF07676 WD40-like Beta Propeller Repeat CO731_01359 PF02472 Biopolymer transport protein ExbD/TolR CO731_01360 PF01618 MotA/TolQ/ExbB proton channel family CO731_01362 PF03061 Thioesterase superfamily CO731_01364 PF00583 Acetyltransferase (GNAT) family CO731_01365 PF05491 RuvB C-terminal winged helix domain CO731_01365 PF05496 Holliday junction DNA helicase RuvB P-loop domain CO731_01365 PF17864 RuvB AAA lid domain CO731_01368 PF07499 RuvA, C-terminal domain CO731_01368 PF01330 RuvA N terminal domain CO731_01372 PF02075 Crossover junction endodeoxyribonuclease RuvC CO731_01376 PF13193 AMP-binding enzyme C-terminal domain CO731_01376 PF00501 AMP-binding enzyme CO731_01380 PF09285 Elongation factor P, C-terminal CO731_01380 PF01132 Elongation factor P (EF-P) OB domain CO731_01380 PF08207 Elongation factor P (EF-P) KOW-like domain CO731_01381 PF00459 Inositol monophosphatase family CO731_01382 PF03006 Haemolysin-III related CO731_01387 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CO731_01388 PF00890 FAD binding domain CO731_01390 PF00664 ABC transporter transmembrane region CO731_01390 PF00005 ABC transporter CO731_01391 PF01197 Ribosomal protein L31 CO731_01393 PF01370 NAD dependent epimerase/dehydratase family CO731_01395 PF07478 D-ala D-ala ligase C-terminus CO731_01395 PF01820 D-ala D-ala ligase N-terminus CO731_01397 PF01709 Transcriptional regulator CO731_01399 PF17151 Periplasmic sensor domain CO731_01399 PF00990 Diguanylate cyclase, GGDEF domain CO731_01401 PF01638 HxlR-like helix-turn-helix CO731_01405 PF00772 DnaB-like helicase N terminal domain CO731_01405 PF03796 DnaB-like helicase C terminal domain CO731_01406 PF03741 Integral membrane protein TerC family CO731_01407 PF13277 YmdB-like protein CO731_01410 PF10431 C-terminal, D2-small domain, of ClpB protein CO731_01410 PF07724 AAA domain (Cdc48 subfamily) CO731_01410 PF17871 AAA lid domain CO731_01410 PF00004 ATPase family associated with various cellular activities (AAA) CO731_01410 PF02861 Clp amino terminal domain, pathogenicity island component CO731_01412 PF01183 Glycosyl hydrolases family 25 CO731_01414 PF01641 SelR domain CO731_01416 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) CO731_01420 PF02887 Pyruvate kinase, alpha/beta domain CO731_01420 PF00224 Pyruvate kinase, barrel domain CO731_01421 PF08386 TAP-like protein CO731_01421 PF00561 alpha/beta hydrolase fold CO731_01423 PF00444 Ribosomal protein L36 CO731_01425 PF02222 ATP-grasp domain CO731_01425 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CO731_01426 PF00731 AIR carboxylase CO731_01429 PF01022 Bacterial regulatory protein, arsR family CO731_01432 PF00550 Phosphopantetheine attachment site CO731_01432 PF14765 Polyketide synthase dehydratase CO731_01432 PF16197 Ketoacyl-synthetase C-terminal extension CO731_01432 PF08240 Alcohol dehydrogenase GroES-like domain CO731_01432 PF02801 Beta-ketoacyl synthase, C-terminal domain CO731_01432 PF08659 KR domain CO731_01432 PF00698 Acyl transferase domain CO731_01432 PF00107 Zinc-binding dehydrogenase CO731_01432 PF00109 Beta-ketoacyl synthase, N-terminal domain CO731_01439 PF00512 His Kinase A (phospho-acceptor) domain CO731_01439 PF00989 PAS fold CO731_01439 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_01440 PF00196 Bacterial regulatory proteins, luxR family CO731_01440 PF00072 Response regulator receiver domain CO731_01443 PF08241 Methyltransferase domain CO731_01449 PF02583 Metal-sensitive transcriptional repressor CO731_01450 PF16916 Dimerisation domain of Zinc Transporter CO731_01450 PF01545 Cation efflux family CO731_01457 PF01022 Bacterial regulatory protein, arsR family CO731_01459 PF04073 Aminoacyl-tRNA editing domain CO731_01462 PF16177 Acetyl-coenzyme A synthetase N-terminus CO731_01462 PF13193 AMP-binding enzyme C-terminal domain CO731_01462 PF00501 AMP-binding enzyme CO731_01471 PF00274 Fructose-bisphosphate aldolase class-I CO731_01472 PF00162 Phosphoglycerate kinase CO731_01475 PF03471 Transporter associated domain CO731_01475 PF00999 Sodium/hydrogen exchanger family CO731_01476 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CO731_01476 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CO731_01477 PF02780 Transketolase, C-terminal domain CO731_01477 PF00456 Transketolase, thiamine diphosphate binding domain CO731_01477 PF02779 Transketolase, pyrimidine binding domain CO731_01480 PF00140 Sigma-70 factor, region 1.2 CO731_01480 PF04542 Sigma-70 region 2 CO731_01480 PF04545 Sigma-70, region 4 CO731_01481 PF00849 RNA pseudouridylate synthase CO731_01483 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CO731_01498 PF00565 Staphylococcal nuclease homologue CO731_01504 PF00665 Integrase core domain CO731_01531 PF02735 Ku70/Ku80 beta-barrel domain CO731_01532 PF04679 ATP dependent DNA ligase C terminal region CO731_01532 PF01068 ATP dependent DNA ligase domain CO731_01532 PF13298 DNA polymerase Ligase (LigD) CO731_01542 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CO731_01542 PF01627 Hpt domain CO731_01542 PF00072 Response regulator receiver domain CO731_01542 PF00512 His Kinase A (phospho-acceptor) domain CO731_01542 PF00672 HAMP domain CO731_01542 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_01544 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01545 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01546 PF00005 ABC transporter CO731_01547 PF01895 PhoU domain CO731_01548 PF00072 Response regulator receiver domain CO731_01548 PF00486 Transcriptional regulatory protein, C terminal CO731_01549 PF17969 L,D-transpeptidase C-terminal domain CO731_01549 PF03734 L,D-transpeptidase catalytic domain CO731_01552 PF00480 ROK family CO731_01553 PF13407 Periplasmic binding protein domain CO731_01554 PF02653 Branched-chain amino acid transport system / permease component CO731_01555 PF00005 ABC transporter CO731_01559 PF13426 PAS domain CO731_01559 PF08447 PAS fold CO731_01559 PF07536 HWE histidine kinase CO731_01561 PF00072 Response regulator receiver domain CO731_01563 PF04542 Sigma-70 region 2 CO731_01563 PF08281 Sigma-70, region 4 CO731_01565 PF00027 Cyclic nucleotide-binding domain CO731_01565 PF13545 Crp-like helix-turn-helix domain CO731_01572 PF07536 HWE histidine kinase CO731_01572 PF13426 PAS domain CO731_01572 PF08447 PAS fold CO731_01575 PF16347 Domain of unknown function (DUF4976) CO731_01575 PF00884 Sulfatase CO731_01576 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CO731_01577 PF01738 Dienelactone hydrolase family CO731_01580 PF00990 Diguanylate cyclase, GGDEF domain CO731_01580 PF01590 GAF domain CO731_01580 PF00563 EAL domain CO731_01580 PF00989 PAS fold CO731_01581 PF00486 Transcriptional regulatory protein, C terminal CO731_01581 PF00072 Response regulator receiver domain CO731_01582 PF00486 Transcriptional regulatory protein, C terminal CO731_01582 PF00072 Response regulator receiver domain CO731_01585 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01586 PF08402 TOBE domain CO731_01586 PF00005 ABC transporter CO731_01590 PF00459 Inositol monophosphatase family CO731_01591 PF00459 Inositol monophosphatase family CO731_01594 PF00356 Bacterial regulatory proteins, lacI family CO731_01597 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01598 PF00005 ABC transporter CO731_01598 PF08402 TOBE domain CO731_01599 PF09335 SNARE associated Golgi protein CO731_01600 PF09278 MerR, DNA binding CO731_01600 PF00376 MerR family regulatory protein CO731_01601 PF00394 Multicopper oxidase CO731_01601 PF07731 Multicopper oxidase CO731_01601 PF07732 Multicopper oxidase CO731_01603 PF00970 Oxidoreductase FAD-binding domain CO731_01603 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_01603 PF00175 Oxidoreductase NAD-binding domain CO731_01605 PF00403 Heavy-metal-associated domain CO731_01606 PF00403 Heavy-metal-associated domain CO731_01607 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CO731_01608 PF00115 Cytochrome C and Quinol oxidase polypeptide I CO731_01610 PF00510 Cytochrome c oxidase subunit III CO731_01614 PF00034 Cytochrome c CO731_01615 PF00300 Histidine phosphatase superfamily (branch 1) CO731_01616 PF17912 MalK OB fold domain CO731_01616 PF00005 ABC transporter CO731_01617 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01619 PF01418 Helix-turn-helix domain, rpiR family CO731_01619 PF01380 SIS domain CO731_01623 PF00005 ABC transporter CO731_01624 PF02608 ABC transporter substrate-binding protein PnrA-like CO731_01625 PF07729 FCD domain CO731_01625 PF00392 Bacterial regulatory proteins, gntR family CO731_01628 PF00355 Rieske [2Fe-2S] domain CO731_01628 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_01629 PF02798 Glutathione S-transferase, N-terminal domain CO731_01630 PF00107 Zinc-binding dehydrogenase CO731_01630 PF08240 Alcohol dehydrogenase GroES-like domain CO731_01631 PF00756 Putative esterase CO731_01632 PF08543 Phosphomethylpyrimidine kinase CO731_01633 PF02581 Thiamine monophosphate synthase CO731_01634 PF05690 Thiazole biosynthesis protein ThiG CO731_01636 PF01266 FAD dependent oxidoreductase CO731_01637 PF13667 ThiC-associated domain CO731_01637 PF01964 Radical SAM ThiC family CO731_01638 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal CO731_01638 PF00676 Dehydrogenase E1 component CO731_01639 PF02780 Transketolase, C-terminal domain CO731_01639 PF02779 Transketolase, pyrimidine binding domain CO731_01640 PF00364 Biotin-requiring enzyme CO731_01640 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CO731_01640 PF02817 e3 binding domain CO731_01641 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_01641 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO731_01642 PF00119 ATP synthase A chain CO731_01645 PF00860 Permease family CO731_01646 PF01979 Amidohydrolase family CO731_01647 PF00005 ABC transporter CO731_01647 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_01648 PF00005 ABC transporter CO731_01648 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_01649 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_01650 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01651 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_01651 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01652 PF01979 Amidohydrolase family CO731_01653 PF01979 Amidohydrolase family CO731_01654 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_01655 PF00291 Pyridoxal-phosphate dependent enzyme CO731_01656 PF03466 LysR substrate binding domain CO731_01656 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_01659 PF00561 alpha/beta hydrolase fold CO731_01660 PF00158 Sigma-54 interaction domain CO731_01660 PF13188 PAS domain CO731_01660 PF02954 Bacterial regulatory protein, Fis family CO731_01661 PF02653 Branched-chain amino acid transport system / permease component CO731_01662 PF02653 Branched-chain amino acid transport system / permease component CO731_01663 PF00005 ABC transporter CO731_01663 PF12399 Branched-chain amino acid ATP-binding cassette transporter CO731_01664 PF00005 ABC transporter CO731_01665 PF02814 UreE urease accessory protein, N-terminal domain CO731_01666 PF14659 Phage integrase, N-terminal SAM-like domain CO731_01666 PF00589 Phage integrase family CO731_01681 PF01343 Peptidase family S49 CO731_01682 PF05872 Bacterial protein of unknown function (DUF853) CO731_01688 PF01546 Peptidase family M20/M25/M40 CO731_01688 PF07687 Peptidase dimerisation domain CO731_01689 PF00768 D-alanyl-D-alanine carboxypeptidase CO731_01689 PF07943 Penicillin-binding protein 5, C-terminal domain CO731_01690 PF07683 Cobalamin synthesis protein cobW C-terminal domain CO731_01690 PF02492 CobW/HypB/UreG, nucleotide-binding domain CO731_01691 PF01206 Sulfurtransferase TusA CO731_01693 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CO731_01694 PF00589 Phage integrase family CO731_01694 PF02899 Phage integrase, N-terminal SAM-like domain CO731_01696 PF01202 Shikimate kinase CO731_01697 PF01761 3-dehydroquinate synthase CO731_01698 PF00571 CBS domain CO731_01698 PF03471 Transporter associated domain CO731_01698 PF01595 Cyclin M transmembrane N-terminal domain CO731_01701 PF01722 BolA-like protein CO731_01702 PF00226 DnaJ domain CO731_01703 PF12556 Cobaltochelatase CobS subunit N terminal CO731_01703 PF08406 CbbQ/NirQ/NorQ C-terminal CO731_01703 PF07728 AAA domain (dynein-related subfamily) CO731_01704 PF06213 Cobalamin biosynthesis protein CobT CO731_01704 PF11775 Cobalamin biosynthesis protein CobT VWA domain CO731_01707 PF03435 Saccharopine dehydrogenase NADP binding domain CO731_01707 PF16653 Saccharopine dehydrogenase C-terminal domain CO731_01708 PF01037 Lrp/AsnC ligand binding domain CO731_01709 PF02592 Putative vitamin uptake transporter CO731_01710 PF00830 Ribosomal L28 family CO731_01714 PF16123 Hydroxyacylglutathione hydrolase C-terminus CO731_01714 PF00753 Metallo-beta-lactamase superfamily CO731_01715 PF01209 ubiE/COQ5 methyltransferase family CO731_01717 PF00781 Diacylglycerol kinase catalytic domain CO731_01718 PF07690 Major Facilitator Superfamily CO731_01719 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_01719 PF03466 LysR substrate binding domain CO731_01720 PF04204 Homoserine O-succinyltransferase CO731_01721 PF00155 Aminotransferase class I and II CO731_01722 PF02153 Prephenate dehydrogenase CO731_01725 PF02805 Metal binding domain of Ada CO731_01725 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CO731_01725 PF12833 Helix-turn-helix domain CO731_01725 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CO731_01729 PF00005 ABC transporter CO731_01732 PF00072 Response regulator receiver domain CO731_01732 PF00486 Transcriptional regulatory protein, C terminal CO731_01734 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_01734 PF03466 LysR substrate binding domain CO731_01735 PF00043 Glutathione S-transferase, C-terminal domain CO731_01735 PF02798 Glutathione S-transferase, N-terminal domain CO731_01737 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CO731_01737 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CO731_01739 PF00206 Lyase CO731_01739 PF14698 Argininosuccinate lyase C-terminal CO731_01740 PF08534 Redoxin CO731_01741 PF13416 Bacterial extracellular solute-binding protein CO731_01742 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01743 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01744 PF00005 ABC transporter CO731_01745 PF17151 Periplasmic sensor domain CO731_01745 PF00990 Diguanylate cyclase, GGDEF domain CO731_01746 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CO731_01746 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CO731_01747 PF00766 Electron transfer flavoprotein FAD-binding domain CO731_01747 PF01012 Electron transfer flavoprotein domain CO731_01748 PF01012 Electron transfer flavoprotein domain CO731_01750 PF01923 Cobalamin adenosyltransferase CO731_01752 PF00106 short chain dehydrogenase CO731_01754 PF00892 EamA-like transporter family CO731_01756 PF00749 tRNA synthetases class I (E and Q), catalytic domain CO731_01757 PF02805 Metal binding domain of Ada CO731_01757 PF06029 AlkA N-terminal domain CO731_01757 PF12833 Helix-turn-helix domain CO731_01757 PF00730 HhH-GPD superfamily base excision DNA repair protein CO731_01760 PF09335 SNARE associated Golgi protein CO731_01762 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_01762 PF03466 LysR substrate binding domain CO731_01768 PF01625 Peptide methionine sulfoxide reductase CO731_01772 PF00462 Glutaredoxin CO731_01773 PF00108 Thiolase, N-terminal domain CO731_01773 PF02803 Thiolase, C-terminal domain CO731_01774 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_01774 PF00970 Oxidoreductase FAD-binding domain CO731_01774 PF00175 Oxidoreductase NAD-binding domain CO731_01775 PF00174 Oxidoreductase molybdopterin binding domain CO731_01776 PF00107 Zinc-binding dehydrogenase CO731_01776 PF08240 Alcohol dehydrogenase GroES-like domain CO731_01782 PF00440 Bacterial regulatory proteins, tetR family CO731_01789 PF01695 IstB-like ATP binding protein CO731_01790 PF00665 Integrase core domain CO731_01793 PF02798 Glutathione S-transferase, N-terminal domain CO731_01793 PF00043 Glutathione S-transferase, C-terminal domain CO731_01794 PF01625 Peptide methionine sulfoxide reductase CO731_01795 PF01641 SelR domain CO731_01796 PF03466 LysR substrate binding domain CO731_01796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_01798 PF01625 Peptide methionine sulfoxide reductase CO731_01805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_01805 PF03466 LysR substrate binding domain CO731_01807 PF03743 Bacterial conjugation TrbI-like protein CO731_01810 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO731_01813 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO731_01816 PF00437 Type II/IV secretion system protein CO731_01818 PF02534 Type IV secretory system Conjugative DNA transfer CO731_01820 PF01464 Transglycosylase SLT domain CO731_01825 PF13614 AAA domain CO731_01831 PF05284 Protein of unknown function (DUF736) CO731_01839 PF03230 Antirestriction protein CO731_01854 PF13744 Helix-turn-helix domain CO731_01855 PF05973 Phage derived protein Gp49-like (DUF891) CO731_01861 PF00890 FAD binding domain CO731_01861 PF14537 Cytochrome c3 CO731_01862 PF00330 Aconitase family (aconitate hydratase) CO731_01862 PF00694 Aconitase C-terminal domain CO731_01864 PF07729 FCD domain CO731_01864 PF00392 Bacterial regulatory proteins, gntR family CO731_01866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_01866 PF03466 LysR substrate binding domain CO731_01867 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CO731_01867 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CO731_01867 PF01842 ACT domain CO731_01868 PF03737 Aldolase/RraA CO731_01869 PF00180 Isocitrate/isopropylmalate dehydrogenase CO731_01870 PF04303 PrpF protein CO731_01873 PF03466 LysR substrate binding domain CO731_01873 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_01877 PF00501 AMP-binding enzyme CO731_01877 PF13193 AMP-binding enzyme C-terminal domain CO731_01880 PF02810 SEC-C motif CO731_01880 PF01043 SecA preprotein cross-linking domain CO731_01880 PF07517 SecA DEAD-like domain CO731_01880 PF07516 SecA Wing and Scaffold domain CO731_01881 PF05698 Bacterial trigger factor protein (TF) C-terminus CO731_01883 PF00440 Bacterial regulatory proteins, tetR family CO731_01883 PF16859 Tetracyclin repressor-like, C-terminal domain CO731_01885 PF01960 ArgJ family CO731_01887 PF00293 NUDIX domain CO731_01891 PF00156 Phosphoribosyl transferase domain CO731_01892 PF00462 Glutaredoxin CO731_01893 PF00795 Carbon-nitrogen hydrolase CO731_01898 PF13840 ACT domain CO731_01898 PF01842 ACT domain CO731_01898 PF00696 Amino acid kinase family CO731_01899 PF01590 GAF domain CO731_01899 PF02896 PEP-utilising enzyme, TIM barrel domain CO731_01899 PF00391 PEP-utilising enzyme, mobile domain CO731_01899 PF05524 PEP-utilising enzyme, N-terminal CO731_01900 PF00472 RF-1 domain CO731_01900 PF03462 PCRF domain CO731_01901 PF05175 Methyltransferase small domain CO731_01901 PF17827 PrmC N-terminal domain CO731_01903 PF10431 C-terminal, D2-small domain, of ClpB protein CO731_01903 PF02861 Clp amino terminal domain, pathogenicity island component CO731_01903 PF07724 AAA domain (Cdc48 subfamily) CO731_01903 PF00004 ATPase family associated with various cellular activities (AAA) CO731_01903 PF17871 AAA lid domain CO731_01905 PF03734 L,D-transpeptidase catalytic domain CO731_01905 PF01476 LysM domain CO731_01906 PF00144 Beta-lactamase CO731_01906 PF11954 Domain of unknown function (DUF3471) CO731_01907 PF13508 Acetyltransferase (GNAT) domain CO731_01911 PF07690 Major Facilitator Superfamily CO731_01912 PF00990 Diguanylate cyclase, GGDEF domain CO731_01912 PF00563 EAL domain CO731_01912 PF03707 Bacterial signalling protein N terminal repeat CO731_01913 PF10145 Phage-related minor tail protein CO731_01913 PF01551 Peptidase family M23 CO731_01913 PF01464 Transglycosylase SLT domain CO731_01929 PF01527 Transposase CO731_01931 PF01571 Aminomethyltransferase folate-binding domain CO731_01931 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_01932 PF04955 HupE / UreJ protein CO731_01933 PF01268 Formate--tetrahydrofolate ligase CO731_01934 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CO731_01934 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CO731_01935 PF00196 Bacterial regulatory proteins, luxR family CO731_01935 PF00072 Response regulator receiver domain CO731_01936 PF13458 Periplasmic binding protein CO731_01937 PF02653 Branched-chain amino acid transport system / permease component CO731_01938 PF12399 Branched-chain amino acid ATP-binding cassette transporter CO731_01938 PF00005 ABC transporter CO731_01939 PF00005 ABC transporter CO731_01940 PF00699 Urease beta subunit CO731_01940 PF00547 Urease, gamma subunit CO731_01941 PF01979 Amidohydrolase family CO731_01941 PF00449 Urease alpha-subunit, N-terminal domain CO731_01942 PF02492 CobW/HypB/UreG, nucleotide-binding domain CO731_01943 PF01774 UreD urease accessory protein CO731_01945 PF01730 UreF CO731_01948 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_01950 PF01381 Helix-turn-helix CO731_01950 PF06114 IrrE N-terminal-like domain CO731_01950 PF09856 Predicted transcriptional regulator (DUF2083) CO731_01951 PF00463 Isocitrate lyase family CO731_01952 PF08240 Alcohol dehydrogenase GroES-like domain CO731_01952 PF00107 Zinc-binding dehydrogenase CO731_01953 PF04828 Glutathione-dependent formaldehyde-activating enzyme CO731_01957 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CO731_01957 PF02770 Acyl-CoA dehydrogenase, middle domain CO731_01957 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CO731_01958 PF01636 Phosphotransferase enzyme family CO731_01959 PF01063 Amino-transferase class IV CO731_01961 PF01212 Beta-eliminating lyase CO731_01962 PF07729 FCD domain CO731_01962 PF00392 Bacterial regulatory proteins, gntR family CO731_01963 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CO731_01963 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CO731_01964 PF05853 beta-keto acid cleavage enzyme CO731_01967 PF07969 Amidohydrolase family CO731_01968 PF00501 AMP-binding enzyme CO731_01968 PF13193 AMP-binding enzyme C-terminal domain CO731_01969 PF00107 Zinc-binding dehydrogenase CO731_01969 PF08240 Alcohol dehydrogenase GroES-like domain CO731_01970 PF00501 AMP-binding enzyme CO731_01970 PF13193 AMP-binding enzyme C-terminal domain CO731_01973 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_01973 PF03466 LysR substrate binding domain CO731_01974 PF02633 Creatinine amidohydrolase CO731_01975 PF00005 ABC transporter CO731_01976 PF00528 Binding-protein-dependent transport system inner membrane component CO731_01977 PF04030 D-arabinono-1,4-lactone oxidase CO731_01977 PF01565 FAD binding domain CO731_01979 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_01979 PF00175 Oxidoreductase NAD-binding domain CO731_01982 PF01042 Endoribonuclease L-PSP CO731_01983 PF01842 ACT domain CO731_01983 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CO731_01983 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CO731_01984 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CO731_01984 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CO731_01986 PF02548 Ketopantoate hydroxymethyltransferase CO731_01987 PF00355 Rieske [2Fe-2S] domain CO731_01989 PF00356 Bacterial regulatory proteins, lacI family CO731_01992 PF02653 Branched-chain amino acid transport system / permease component CO731_01993 PF00005 ABC transporter CO731_01994 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CO731_01994 PF11890 Domain of unknown function (DUF3410) CO731_01994 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CO731_01997 PF00535 Glycosyl transferase family 2 CO731_01998 PF00535 Glycosyl transferase family 2 CO731_02000 PF07690 Major Facilitator Superfamily CO731_02001 PF00171 Aldehyde dehydrogenase family CO731_02003 PF00365 Phosphofructokinase CO731_02004 PF17969 L,D-transpeptidase C-terminal domain CO731_02004 PF03734 L,D-transpeptidase catalytic domain CO731_02004 PF01476 LysM domain CO731_02005 PF01810 LysE type translocator CO731_02008 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CO731_02008 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CO731_02010 PF01261 Xylose isomerase-like TIM barrel CO731_02013 PF01965 DJ-1/PfpI family CO731_02013 PF12833 Helix-turn-helix domain CO731_02014 PF05853 beta-keto acid cleavage enzyme CO731_02015 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CO731_02015 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CO731_02016 PF02770 Acyl-CoA dehydrogenase, middle domain CO731_02016 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CO731_02016 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CO731_02017 PF13607 Succinyl-CoA ligase like flavodoxin domain CO731_02017 PF00583 Acetyltransferase (GNAT) family CO731_02017 PF13380 CoA binding domain CO731_02018 PF00378 Enoyl-CoA hydratase/isomerase CO731_02019 PF07859 alpha/beta hydrolase fold CO731_02020 PF00005 ABC transporter CO731_02020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_02021 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_02021 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02022 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02023 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_02024 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CO731_02024 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CO731_02026 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CO731_02028 PF04115 Ureidoglycolate lyase CO731_02029 PF05899 Protein of unknown function (DUF861) CO731_02029 PF07883 Cupin domain CO731_02031 PF00576 HIUase/Transthyretin family CO731_02032 PF01799 [2Fe-2S] binding domain CO731_02032 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_02033 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CO731_02033 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CO731_02035 PF00210 Ferritin-like domain CO731_02036 PF01638 HxlR-like helix-turn-helix CO731_02038 PF00144 Beta-lactamase CO731_02039 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_02039 PF03466 LysR substrate binding domain CO731_02041 PF01979 Amidohydrolase family CO731_02042 PF03928 Haem-degrading CO731_02043 PF05161 MOFRL family CO731_02043 PF13660 Domain of unknown function (DUF4147) CO731_02046 PF00120 Glutamine synthetase, catalytic domain CO731_02047 PF00202 Aminotransferase class-III CO731_02052 PF02492 CobW/HypB/UreG, nucleotide-binding domain CO731_02052 PF07683 Cobalamin synthesis protein cobW C-terminal domain CO731_02054 PF01047 MarR family CO731_02056 PF00356 Bacterial regulatory proteins, lacI family CO731_02057 PF07722 Peptidase C26 CO731_02058 PF03480 Bacterial extracellular solute-binding protein, family 7 CO731_02059 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CO731_02065 PF08448 PAS fold CO731_02065 PF08447 PAS fold CO731_02065 PF00990 Diguanylate cyclase, GGDEF domain CO731_02065 PF00563 EAL domain CO731_02069 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CO731_02069 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CO731_02070 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CO731_02071 PF02233 NAD(P) transhydrogenase beta subunit CO731_02072 PF01810 LysE type translocator CO731_02075 PF02525 Flavodoxin-like fold CO731_02077 PF01165 Ribosomal protein S21 CO731_02079 PF07690 Major Facilitator Superfamily CO731_02081 PF01266 FAD dependent oxidoreductase CO731_02085 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_02085 PF17806 Sarcosine oxidase A3 domain CO731_02085 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_02085 PF01571 Aminomethyltransferase folate-binding domain CO731_02089 PF01575 MaoC like domain CO731_02090 PF00873 AcrB/AcrD/AcrF family CO731_02094 PF13520 Amino acid permease CO731_02095 PF00120 Glutamine synthetase, catalytic domain CO731_02096 PF00171 Aldehyde dehydrogenase family CO731_02097 PF00465 Iron-containing alcohol dehydrogenase CO731_02101 PF08402 TOBE domain CO731_02101 PF00005 ABC transporter CO731_02102 PF03466 LysR substrate binding domain CO731_02102 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_02103 PF13416 Bacterial extracellular solute-binding protein CO731_02104 PF00005 ABC transporter CO731_02104 PF08402 TOBE domain CO731_02105 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02106 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02107 PF00171 Aldehyde dehydrogenase family CO731_02110 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CO731_02110 PF00356 Bacterial regulatory proteins, lacI family CO731_02111 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CO731_02111 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CO731_02112 PF01144 Coenzyme A transferase CO731_02113 PF00378 Enoyl-CoA hydratase/isomerase CO731_02114 PF00171 Aldehyde dehydrogenase family CO731_02115 PF01547 Bacterial extracellular solute-binding protein CO731_02116 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02117 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02118 PF17912 MalK OB fold domain CO731_02118 PF00005 ABC transporter CO731_02119 PF05199 GMC oxidoreductase CO731_02119 PF00732 GMC oxidoreductase CO731_02121 PF00732 GMC oxidoreductase CO731_02121 PF05199 GMC oxidoreductase CO731_02122 PF02574 Homocysteine S-methyltransferase CO731_02122 PF00809 Pterin binding enzyme CO731_02122 PF02310 B12 binding domain CO731_02122 PF02607 B12 binding domain CO731_02122 PF02965 Vitamin B12 dependent methionine synthase, activation domain CO731_02124 PF02311 AraC-like ligand binding domain CO731_02124 PF12833 Helix-turn-helix domain CO731_02126 PF00890 FAD binding domain CO731_02126 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CO731_02130 PF00072 Response regulator receiver domain CO731_02132 PF00459 Inositol monophosphatase family CO731_02134 PF00011 Hsp20/alpha crystallin family CO731_02136 PF00561 alpha/beta hydrolase fold CO731_02137 PF01212 Beta-eliminating lyase CO731_02138 PF01645 Conserved region in glutamate synthase CO731_02138 PF04898 Glutamate synthase central domain CO731_02138 PF00310 Glutamine amidotransferases class-II CO731_02138 PF01493 GXGXG motif CO731_02139 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CO731_02139 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_02141 PF13406 Transglycosylase SLT domain CO731_02142 PF00483 Nucleotidyl transferase CO731_02143 PF00881 Nitroreductase family CO731_02144 PF01872 RibD C-terminal domain CO731_02146 PF01380 SIS domain CO731_02146 PF00571 CBS domain CO731_02148 PF16200 C-terminal region of band_7 CO731_02148 PF01145 SPFH domain / Band 7 family CO731_02150 PF00762 Ferrochelatase CO731_02151 PF02872 5'-nucleotidase, C-terminal domain CO731_02151 PF00149 Calcineurin-like phosphoesterase CO731_02153 PF03435 Saccharopine dehydrogenase NADP binding domain CO731_02153 PF16653 Saccharopine dehydrogenase C-terminal domain CO731_02156 PF04715 Anthranilate synthase component I, N terminal region CO731_02156 PF00425 chorismate binding enzyme CO731_02158 PF02954 Bacterial regulatory protein, Fis family CO731_02158 PF00072 Response regulator receiver domain CO731_02158 PF00158 Sigma-54 interaction domain CO731_02159 PF05951 Bacterial protein of unknown function (DUF882) CO731_02160 PF01081 KDPG and KHG aldolase CO731_02161 PF01510 N-acetylmuramoyl-L-alanine amidase CO731_02161 PF01471 Putative peptidoglycan binding domain CO731_02166 PF00155 Aminotransferase class I and II CO731_02171 PF03466 LysR substrate binding domain CO731_02171 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_02173 PF01425 Amidase CO731_02174 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CO731_02174 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CO731_02181 PF01311 Bacterial export proteins, family 1 CO731_02182 PF00771 FHIPEP family CO731_02187 PF05977 Transmembrane secretion effector CO731_02188 PF01313 Bacterial export proteins, family 3 CO731_02189 PF03963 Flagellar hook capping protein - N-terminal region CO731_02190 PF07378 Flagellar protein FlbT CO731_02191 PF07309 Flagellar protein FlaF CO731_02194 PF07559 Flagellar basal body protein FlaE CO731_02194 PF00460 Flagella basal body rod protein CO731_02194 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CO731_02195 PF00486 Transcriptional regulatory protein, C terminal CO731_02197 PF02120 Flagellar hook-length control protein FliK CO731_02199 PF13677 Membrane MotB of proton-channel complex MotA/MotB CO731_02199 PF00691 OmpA family CO731_02202 PF00669 Bacterial flagellin N-terminal helical region CO731_02202 PF00700 Bacterial flagellin C-terminal helical region CO731_02203 PF00700 Bacterial flagellin C-terminal helical region CO731_02203 PF00669 Bacterial flagellin N-terminal helical region CO731_02204 PF00700 Bacterial flagellin C-terminal helical region CO731_02204 PF00669 Bacterial flagellin N-terminal helical region CO731_02205 PF00700 Bacterial flagellin C-terminal helical region CO731_02205 PF00669 Bacterial flagellin N-terminal helical region CO731_02206 PF00700 Bacterial flagellin C-terminal helical region CO731_02206 PF00669 Bacterial flagellin N-terminal helical region CO731_02207 PF00700 Bacterial flagellin C-terminal helical region CO731_02207 PF00669 Bacterial flagellin N-terminal helical region CO731_02208 PF00813 FliP family CO731_02210 PF02107 Flagellar L-ring protein CO731_02212 PF02119 Flagellar P-ring protein CO731_02213 PF13144 Chaperone for flagella basal body P-ring formation CO731_02214 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CO731_02214 PF00460 Flagella basal body rod protein CO731_02215 PF02049 Flagellar hook-basal body complex protein FliE CO731_02216 PF00460 Flagella basal body rod protein CO731_02216 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CO731_02217 PF00460 Flagella basal body rod protein CO731_02219 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CO731_02219 PF18269 T3SS EscN ATPase C-terminal domain CO731_02220 PF00460 Flagella basal body rod protein CO731_02220 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CO731_02222 PF01618 MotA/TolQ/ExbB proton channel family CO731_02223 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CO731_02224 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CO731_02225 PF14842 FliG N-terminal domain CO731_02225 PF14841 FliG middle domain CO731_02225 PF01706 FliG C-terminal domain CO731_02226 PF01312 FlhB HrpN YscU SpaS Family CO731_02229 PF03472 Autoinducer binding domain CO731_02229 PF00196 Bacterial regulatory proteins, luxR family CO731_02231 PF00850 Histone deacetylase domain CO731_02232 PF16859 Tetracyclin repressor-like, C-terminal domain CO731_02232 PF00440 Bacterial regulatory proteins, tetR family CO731_02233 PF07969 Amidohydrolase family CO731_02234 PF08402 TOBE domain CO731_02234 PF00005 ABC transporter CO731_02235 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02236 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02237 PF13416 Bacterial extracellular solute-binding protein CO731_02240 PF00144 Beta-lactamase CO731_02241 PF01263 Aldose 1-epimerase CO731_02242 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_02242 PF14759 Reductase C-terminal CO731_02243 PF00355 Rieske [2Fe-2S] domain CO731_02245 PF00356 Bacterial regulatory proteins, lacI family CO731_02246 PF00535 Glycosyl transferase family 2 CO731_02249 PF13407 Periplasmic binding protein domain CO731_02250 PF00005 ABC transporter CO731_02251 PF02653 Branched-chain amino acid transport system / permease component CO731_02252 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CO731_02252 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CO731_02253 PF00294 pfkB family carbohydrate kinase CO731_02254 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CO731_02254 PF00205 Thiamine pyrophosphate enzyme, central domain CO731_02254 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CO731_02255 PF01261 Xylose isomerase-like TIM barrel CO731_02257 PF04962 KduI/IolB family CO731_02258 PF02548 Ketopantoate hydroxymethyltransferase CO731_02260 PF00529 HlyD membrane-fusion protein of T1SS CO731_02261 PF00005 ABC transporter CO731_02261 PF00664 ABC transporter transmembrane region CO731_02264 PF00072 Response regulator receiver domain CO731_02264 PF00196 Bacterial regulatory proteins, luxR family CO731_02268 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_02273 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_02274 PF01266 FAD dependent oxidoreductase CO731_02276 PF07969 Amidohydrolase family CO731_02277 PF06299 Protein of unknown function (DUF1045) CO731_02278 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02279 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_02280 PF00512 His Kinase A (phospho-acceptor) domain CO731_02281 PF00005 ABC transporter CO731_02283 PF03616 Sodium/glutamate symporter CO731_02285 PF00005 ABC transporter CO731_02286 PF00005 ABC transporter CO731_02287 PF06007 Phosphonate metabolism protein PhnJ CO731_02289 PF01381 Helix-turn-helix CO731_02289 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system CO731_02290 PF05861 Bacterial phosphonate metabolism protein (PhnI) CO731_02291 PF05845 Bacterial phosphonate metabolism protein (PhnH) CO731_02292 PF06754 Phosphonate metabolism protein PhnG CO731_02293 PF07702 UTRA domain CO731_02293 PF00392 Bacterial regulatory proteins, gntR family CO731_02295 PF02563 Polysaccharide biosynthesis/export protein CO731_02296 PF02397 Bacterial sugar transferase CO731_02298 PF00535 Glycosyl transferase family 2 CO731_02299 PF16363 GDP-mannose 4,6 dehydratase CO731_02301 PF00722 Glycosyl hydrolases family 16 CO731_02302 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CO731_02302 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CO731_02302 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CO731_02304 PF13439 Glycosyltransferase Family 4 CO731_02304 PF00534 Glycosyl transferases group 1 CO731_02308 PF00535 Glycosyl transferase family 2 CO731_02309 PF00535 Glycosyl transferase family 2 CO731_02310 PF00535 Glycosyl transferase family 2 CO731_02311 PF00483 Nucleotidyl transferase CO731_02312 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CO731_02312 PF02706 Chain length determinant protein CO731_02312 PF13807 G-rich domain on putative tyrosine kinase CO731_02313 PF00149 Calcineurin-like phosphoesterase CO731_02315 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CO731_02315 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CO731_02319 PF00107 Zinc-binding dehydrogenase CO731_02319 PF08240 Alcohol dehydrogenase GroES-like domain CO731_02320 PF01638 HxlR-like helix-turn-helix CO731_02322 PF00486 Transcriptional regulatory protein, C terminal CO731_02322 PF00072 Response regulator receiver domain CO731_02323 PF01339 CheB methylesterase CO731_02323 PF00072 Response regulator receiver domain CO731_02324 PF10090 Histidine phosphotransferase C-terminal domain CO731_02327 PF00588 SpoU rRNA Methylase family CO731_02328 PF01022 Bacterial regulatory protein, arsR family CO731_02330 PF00106 short chain dehydrogenase CO731_02332 PF13409 Glutathione S-transferase, N-terminal domain CO731_02333 PF00293 NUDIX domain CO731_02336 PF12697 Alpha/beta hydrolase family CO731_02338 PF08502 LeuA allosteric (dimerisation) domain CO731_02338 PF00682 HMGL-like CO731_02340 PF05145 Transition state regulatory protein AbrB CO731_02346 PF00425 chorismate binding enzyme CO731_02346 PF00117 Glutamine amidotransferase class-I CO731_02346 PF04715 Anthranilate synthase component I, N terminal region CO731_02347 PF01032 FecCD transport family CO731_02349 PF00005 ABC transporter CO731_02350 PF07690 Major Facilitator Superfamily CO731_02351 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_02351 PF03466 LysR substrate binding domain CO731_02352 PF00892 EamA-like transporter family CO731_02353 PF01011 PQQ enzyme repeat CO731_02353 PF13360 PQQ-like domain CO731_02356 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_02356 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO731_02356 PF00403 Heavy-metal-associated domain CO731_02358 PF00132 Bacterial transferase hexapeptide (six repeats) CO731_02358 PF14602 Hexapeptide repeat of succinyl-transferase CO731_02358 PF12464 Maltose acetyltransferase CO731_02359 PF00885 6,7-dimethyl-8-ribityllumazine synthase CO731_02362 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CO731_02363 PF01268 Formate--tetrahydrofolate ligase CO731_02369 PF00265 Thymidine kinase CO731_02370 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CO731_02371 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02372 PF00005 ABC transporter CO731_02372 PF00571 CBS domain CO731_02375 PF12833 Helix-turn-helix domain CO731_02376 PF07237 Protein of unknown function (DUF1428) CO731_02377 PF02617 ATP-dependent Clp protease adaptor protein ClpS CO731_02382 PF00313 'Cold-shock' DNA-binding domain CO731_02387 PF07726 ATPase family associated with various cellular activities (AAA) CO731_02387 PF17863 AAA lid domain CO731_02389 PF00293 NUDIX domain CO731_02390 PF13735 tRNA nucleotidyltransferase domain 2 putative CO731_02390 PF12627 Probable RNA and SrmB- binding site of polymerase A CO731_02390 PF01743 Poly A polymerase head domain CO731_02393 PF03880 DbpA RNA binding domain CO731_02393 PF00270 DEAD/DEAH box helicase CO731_02393 PF00271 Helicase conserved C-terminal domain CO731_02396 PF01218 Coproporphyrinogen III oxidase CO731_02399 PF00376 MerR family regulatory protein CO731_02399 PF09278 MerR, DNA binding CO731_02400 PF00588 SpoU rRNA Methylase family CO731_02402 PF00005 ABC transporter CO731_02402 PF00664 ABC transporter transmembrane region CO731_02403 PF00005 ABC transporter CO731_02403 PF00664 ABC transporter transmembrane region CO731_02404 PF00005 ABC transporter CO731_02404 PF00664 ABC transporter transmembrane region CO731_02406 PF00355 Rieske [2Fe-2S] domain CO731_02406 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CO731_02407 PF00032 Cytochrome b(C-terminal)/b6/petD CO731_02407 PF00033 Cytochrome b/b6/petB CO731_02408 PF02167 Cytochrome C1 family CO731_02408 PF00032 Cytochrome b(C-terminal)/b6/petD CO731_02408 PF00033 Cytochrome b/b6/petB CO731_02409 PF00156 Phosphoribosyl transferase domain CO731_02410 PF08031 Berberine and berberine like CO731_02410 PF01565 FAD binding domain CO731_02413 PF01544 CorA-like Mg2+ transporter protein CO731_02414 PF13505 Outer membrane protein beta-barrel domain CO731_02415 PF01636 Phosphotransferase enzyme family CO731_02416 PF01926 50S ribosome-binding GTPase CO731_02416 PF06071 Protein of unknown function (DUF933) CO731_02417 PF01872 RibD C-terminal domain CO731_02419 PF01195 Peptidyl-tRNA hydrolase CO731_02420 PF01386 Ribosomal L25p family CO731_02420 PF14693 Ribosomal protein TL5, C-terminal domain CO731_02422 PF09828 Chromate resistance exported protein CO731_02423 PF02417 Chromate transporter CO731_02424 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CO731_02424 PF14572 Phosphoribosyl synthetase-associated domain CO731_02429 PF01790 Prolipoprotein diacylglyceryl transferase CO731_02432 PF01588 Putative tRNA binding domain CO731_02433 PF13439 Glycosyltransferase Family 4 CO731_02433 PF00534 Glycosyl transferases group 1 CO731_02434 PF03180 NLPA lipoprotein CO731_02435 PF09383 NIL domain CO731_02435 PF00005 ABC transporter CO731_02436 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02437 PF16527 Two-component sensor protein CpxA, periplasmic domain CO731_02437 PF00512 His Kinase A (phospho-acceptor) domain CO731_02437 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_02437 PF00672 HAMP domain CO731_02439 PF00072 Response regulator receiver domain CO731_02439 PF00486 Transcriptional regulatory protein, C terminal CO731_02440 PF12802 MarR family CO731_02441 PF01063 Amino-transferase class IV CO731_02443 PF00753 Metallo-beta-lactamase superfamily CO731_02445 PF00313 'Cold-shock' DNA-binding domain CO731_02447 PF00313 'Cold-shock' DNA-binding domain CO731_02450 PF04828 Glutathione-dependent formaldehyde-activating enzyme CO731_02453 PF01381 Helix-turn-helix CO731_02459 PF00873 AcrB/AcrD/AcrF family CO731_02460 PF00561 alpha/beta hydrolase fold CO731_02461 PF00144 Beta-lactamase CO731_02463 PF01037 Lrp/AsnC ligand binding domain CO731_02467 PF04851 Type III restriction enzyme, res subunit CO731_02467 PF00271 Helicase conserved C-terminal domain CO731_02467 PF02151 UvrB/uvrC motif CO731_02467 PF12344 Ultra-violet resistance protein B CO731_02467 PF17757 UvrB interaction domain CO731_02472 PF04193 PQ loop repeat CO731_02477 PF00781 Diacylglycerol kinase catalytic domain CO731_02480 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CO731_02480 PF13378 Enolase C-terminal domain-like CO731_02481 PF00732 GMC oxidoreductase CO731_02481 PF05199 GMC oxidoreductase CO731_02482 PF03061 Thioesterase superfamily CO731_02485 PF00571 CBS domain CO731_02485 PF03471 Transporter associated domain CO731_02485 PF01595 Cyclin M transmembrane N-terminal domain CO731_02494 PF07995 Glucose / Sorbosone dehydrogenase CO731_02495 PF03449 Transcription elongation factor, N-terminal CO731_02495 PF01272 Transcription elongation factor, GreA/GreB, C-term CO731_02496 PF00534 Glycosyl transferases group 1 CO731_02498 PF00535 Glycosyl transferase family 2 CO731_02501 PF01037 Lrp/AsnC ligand binding domain CO731_02502 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_02503 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_02503 PF03466 LysR substrate binding domain CO731_02506 PF00174 Oxidoreductase molybdopterin binding domain CO731_02507 PF14492 Elongation Factor G, domain II CO731_02507 PF03764 Elongation factor G, domain IV CO731_02507 PF00009 Elongation factor Tu GTP binding domain CO731_02507 PF00679 Elongation factor G C-terminus CO731_02508 PF00083 Sugar (and other) transporter CO731_02512 PF00990 Diguanylate cyclase, GGDEF domain CO731_02512 PF03707 Bacterial signalling protein N terminal repeat CO731_02512 PF13188 PAS domain CO731_02512 PF00563 EAL domain CO731_02514 PF00043 Glutathione S-transferase, C-terminal domain CO731_02514 PF02798 Glutathione S-transferase, N-terminal domain CO731_02515 PF00313 'Cold-shock' DNA-binding domain CO731_02517 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CO731_02517 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CO731_02519 PF00583 Acetyltransferase (GNAT) family CO731_02522 PF13458 Periplasmic binding protein CO731_02525 PF02142 MGS-like domain CO731_02525 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CO731_02525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CO731_02526 PF01022 Bacterial regulatory protein, arsR family CO731_02527 PF07690 Major Facilitator Superfamily CO731_02529 PF13193 AMP-binding enzyme C-terminal domain CO731_02529 PF00501 AMP-binding enzyme CO731_02531 PF04235 Protein of unknown function (DUF418) CO731_02533 PF04228 Putative neutral zinc metallopeptidase CO731_02534 PF00248 Aldo/keto reductase family CO731_02535 PF07690 Major Facilitator Superfamily CO731_02537 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CO731_02537 PF00117 Glutamine amidotransferase class-I CO731_02541 PF02690 Na+/Pi-cotransporter CO731_02542 PF01807 CHC2 zinc finger CO731_02542 PF08278 DNA primase DnaG DnaB-binding CO731_02542 PF08275 DNA primase catalytic core, N-terminal domain CO731_02542 PF10410 DnaB-helicase binding domain of primase CO731_02542 PF13662 Toprim domain CO731_02543 PF03979 Sigma-70 factor, region 1.1 CO731_02543 PF04542 Sigma-70 region 2 CO731_02543 PF04539 Sigma-70 region 3 CO731_02543 PF00140 Sigma-70 factor, region 1.2 CO731_02543 PF04546 Sigma-70, non-essential region CO731_02543 PF04545 Sigma-70, region 4 CO731_02546 PF01810 LysE type translocator CO731_02547 PF00583 Acetyltransferase (GNAT) family CO731_02550 PF00440 Bacterial regulatory proteins, tetR family CO731_02552 PF00582 Universal stress protein family CO731_02557 PF05974 Domain of unknown function (DUF892) CO731_02559 PF03350 Uncharacterized protein family, UPF0114 CO731_02560 PF00691 OmpA family CO731_02561 PF03692 Putative zinc- or iron-chelating domain CO731_02563 PF04402 Protein of unknown function (DUF541) CO731_02566 PF03576 Peptidase family S58 CO731_02567 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02568 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02569 PF00005 ABC transporter CO731_02569 PF08402 TOBE domain CO731_02572 PF03576 Peptidase family S58 CO731_02573 PF12833 Helix-turn-helix domain CO731_02573 PF14525 AraC-binding-like domain CO731_02575 PF03449 Transcription elongation factor, N-terminal CO731_02575 PF01272 Transcription elongation factor, GreA/GreB, C-term CO731_02576 PF00034 Cytochrome c CO731_02584 PF00361 Proton-conducting membrane transporter CO731_02586 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CO731_02586 PF13244 Domain of unknown function (DUF4040) CO731_02586 PF00361 Proton-conducting membrane transporter CO731_02586 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CO731_02587 PF03334 Na+/H+ antiporter subunit CO731_02589 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CO731_02592 PF13520 Amino acid permease CO731_02593 PF13520 Amino acid permease CO731_02595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CO731_02596 PF00873 AcrB/AcrD/AcrF family CO731_02602 PF02311 AraC-like ligand binding domain CO731_02602 PF12833 Helix-turn-helix domain CO731_02603 PF12832 MFS_1 like family CO731_02605 PF01272 Transcription elongation factor, GreA/GreB, C-term CO731_02605 PF03449 Transcription elongation factor, N-terminal CO731_02607 PF03466 LysR substrate binding domain CO731_02607 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_02609 PF00701 Dihydrodipicolinate synthetase family CO731_02610 PF06052 3-hydroxyanthranilic acid dioxygenase CO731_02612 PF02653 Branched-chain amino acid transport system / permease component CO731_02615 PF00005 ABC transporter CO731_02616 PF03447 Homoserine dehydrogenase, NAD binding domain CO731_02616 PF01958 Domain of unknown function DUF108 CO731_02617 PF00171 Aldehyde dehydrogenase family CO731_02618 PF00067 Cytochrome P450 CO731_02619 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_02619 PF00175 Oxidoreductase NAD-binding domain CO731_02620 PF03786 D-mannonate dehydratase (UxuA) CO731_02622 PF01557 Fumarylacetoacetate (FAA) hydrolase family CO731_02623 PF01261 Xylose isomerase-like TIM barrel CO731_02624 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CO731_02624 PF08666 SAF domain CO731_02625 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CO731_02625 PF08666 SAF domain CO731_02626 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_02626 PF00005 ABC transporter CO731_02627 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_02627 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02628 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02629 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_02630 PF07687 Peptidase dimerisation domain CO731_02630 PF01546 Peptidase family M20/M25/M40 CO731_02632 PF01053 Cys/Met metabolism PLP-dependent enzyme CO731_02633 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_02634 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02635 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02636 PF00005 ABC transporter CO731_02639 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_02639 PF03466 LysR substrate binding domain CO731_02640 PF07690 Major Facilitator Superfamily CO731_02642 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CO731_02644 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_02644 PF00005 ABC transporter CO731_02645 PF00005 ABC transporter CO731_02645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_02646 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_02646 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02647 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02649 PF02633 Creatinine amidohydrolase CO731_02650 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CO731_02650 PF13378 Enolase C-terminal domain-like CO731_02651 PF01380 SIS domain CO731_02651 PF01418 Helix-turn-helix domain, rpiR family CO731_02653 PF00171 Aldehyde dehydrogenase family CO731_02654 PF02954 Bacterial regulatory protein, Fis family CO731_02655 PF00743 Flavin-binding monooxygenase-like CO731_02657 PF01590 GAF domain CO731_02657 PF00158 Sigma-54 interaction domain CO731_02657 PF02954 Bacterial regulatory protein, Fis family CO731_02658 PF00700 Bacterial flagellin C-terminal helical region CO731_02658 PF00669 Bacterial flagellin N-terminal helical region CO731_02659 PF06796 Periplasmic nitrate reductase protein NapE CO731_02662 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CO731_02662 PF00384 Molybdopterin oxidoreductase CO731_02662 PF01568 Molydopterin dinucleotide binding domain CO731_02663 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CO731_02664 PF03264 NapC/NirT cytochrome c family, N-terminal region CO731_02666 PF00027 Cyclic nucleotide-binding domain CO731_02666 PF13545 Crp-like helix-turn-helix domain CO731_02667 PF00127 Copper binding proteins, plastocyanin/azurin family CO731_02670 PF07732 Multicopper oxidase CO731_02670 PF00394 Multicopper oxidase CO731_02673 PF00510 Cytochrome c oxidase subunit III CO731_02675 PF00034 Cytochrome c CO731_02676 PF00115 Cytochrome C and Quinol oxidase polypeptide I CO731_02677 PF08406 CbbQ/NirQ/NorQ C-terminal CO731_02677 PF07728 AAA domain (dynein-related subfamily) CO731_02678 PF00092 von Willebrand factor type A domain CO731_02679 PF04055 Radical SAM superfamily CO731_02683 PF08376 Nitrate and nitrite sensing CO731_02683 PF03861 ANTAR domain CO731_02685 PF07690 Major Facilitator Superfamily CO731_02686 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CO731_02686 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_02686 PF18267 Rubredoxin NAD+ reductase C-terminal domain CO731_02686 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CO731_02686 PF04324 BFD-like [2Fe-2S] binding domain CO731_02688 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CO731_02688 PF04324 BFD-like [2Fe-2S] binding domain CO731_02688 PF01568 Molydopterin dinucleotide binding domain CO731_02688 PF00384 Molybdopterin oxidoreductase CO731_02691 PF00535 Glycosyl transferase family 2 CO731_02698 PF00512 His Kinase A (phospho-acceptor) domain CO731_02698 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_02698 PF00672 HAMP domain CO731_02698 PF17149 Periplasmic sensor domain found in signal transduction proteins CO731_02698 PF01627 Hpt domain CO731_02698 PF00072 Response regulator receiver domain CO731_02699 PF00196 Bacterial regulatory proteins, luxR family CO731_02699 PF00072 Response regulator receiver domain CO731_02700 PF01810 LysE type translocator CO731_02705 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CO731_02706 PF01425 Amidase CO731_02708 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CO731_02708 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CO731_02709 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_02710 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02711 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02716 PF00005 ABC transporter CO731_02716 PF12857 TOBE-like domain CO731_02717 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02718 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02721 PF00912 Transglycosylase CO731_02721 PF00905 Penicillin binding protein transpeptidase domain CO731_02721 PF06832 Penicillin-Binding Protein C-terminus Family CO731_02722 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CO731_02722 PF17962 Bacterial macroglobulin domain 6 CO731_02722 PF01835 MG2 domain CO731_02722 PF07703 Alpha-2-macroglobulin bait region domain CO731_02722 PF00207 Alpha-2-macroglobulin family CO731_02722 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CO731_02722 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CO731_02722 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CO731_02723 PF01103 Surface antigen CO731_02723 PF17243 POTRA domain TamA domain 1 CO731_02723 PF07244 Surface antigen variable number repeat CO731_02725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_02726 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02727 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_02727 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02728 PF00005 ABC transporter CO731_02728 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_02730 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CO731_02730 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_02731 PF01180 Dihydroorotate dehydrogenase CO731_02734 PF02627 Carboxymuconolactone decarboxylase family CO731_02736 PF08362 YcdC-like protein, C-terminal region CO731_02736 PF00440 Bacterial regulatory proteins, tetR family CO731_02737 PF00202 Aminotransferase class-III CO731_02738 PF07687 Peptidase dimerisation domain CO731_02738 PF01546 Peptidase family M20/M25/M40 CO731_02739 PF01979 Amidohydrolase family CO731_02740 PF00005 ABC transporter CO731_02741 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02742 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02746 PF00535 Glycosyl transferase family 2 CO731_02747 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CO731_02747 PF00205 Thiamine pyrophosphate enzyme, central domain CO731_02747 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CO731_02748 PF02515 CoA-transferase family III CO731_02749 PF12146 Serine aminopeptidase, S33 CO731_02750 PF00005 ABC transporter CO731_02751 PF01061 ABC-2 type transporter CO731_02753 PF00296 Luciferase-like monooxygenase CO731_02754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_02754 PF03466 LysR substrate binding domain CO731_02757 PF00005 ABC transporter CO731_02757 PF12848 ABC transporter CO731_02758 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CO731_02758 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CO731_02762 PF01980 tRNA-methyltransferase O CO731_02762 PF18389 TrmO C-terminal domain CO731_02763 PF13847 Methyltransferase domain CO731_02763 PF03551 Transcriptional regulator PadR-like family CO731_02764 PF02219 Methylenetetrahydrofolate reductase CO731_02768 PF01370 NAD dependent epimerase/dehydratase family CO731_02770 PF01183 Glycosyl hydrolases family 25 CO731_02775 PF00892 EamA-like transporter family CO731_02776 PF00226 DnaJ domain CO731_02776 PF05099 Tellurite resistance protein TerB CO731_02780 PF01053 Cys/Met metabolism PLP-dependent enzyme CO731_02781 PF02381 MraZ protein, putative antitoxin-like CO731_02782 PF01795 MraW methylase family CO731_02784 PF03717 Penicillin-binding Protein dimerisation domain CO731_02784 PF00905 Penicillin binding protein transpeptidase domain CO731_02785 PF08245 Mur ligase middle domain CO731_02785 PF01225 Mur ligase family, catalytic domain CO731_02785 PF02875 Mur ligase family, glutamate ligase domain CO731_02786 PF08245 Mur ligase middle domain CO731_02786 PF02875 Mur ligase family, glutamate ligase domain CO731_02786 PF01225 Mur ligase family, catalytic domain CO731_02787 PF00953 Glycosyl transferase family 4 CO731_02787 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CO731_02788 PF08245 Mur ligase middle domain CO731_02789 PF01098 Cell cycle protein CO731_02790 PF03033 Glycosyltransferase family 28 N-terminal domain CO731_02790 PF04101 Glycosyltransferase family 28 C-terminal domain CO731_02791 PF01225 Mur ligase family, catalytic domain CO731_02791 PF08245 Mur ligase middle domain CO731_02791 PF02875 Mur ligase family, glutamate ligase domain CO731_02792 PF01565 FAD binding domain CO731_02792 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CO731_02793 PF07478 D-ala D-ala ligase C-terminus CO731_02793 PF01820 D-ala D-ala ligase N-terminus CO731_02794 PF03799 Cell division protein FtsQ CO731_02794 PF08478 POTRA domain, FtsQ-type CO731_02795 PF02491 SHS2 domain inserted in FTSA CO731_02796 PF00091 Tubulin/FtsZ family, GTPase domain CO731_02796 PF12327 FtsZ family, C-terminal domain CO731_02797 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CO731_02798 PF13525 Outer membrane lipoprotein CO731_02799 PF13476 AAA domain CO731_02799 PF02463 RecF/RecN/SMC N terminal domain CO731_02800 PF03120 NAD-dependent DNA ligase OB-fold domain CO731_02800 PF01653 NAD-dependent DNA ligase adenylation domain CO731_02800 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CO731_02800 PF12826 Helix-hairpin-helix motif CO731_02800 PF00533 BRCA1 C Terminus (BRCT) domain CO731_02801 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CO731_02801 PF11490 DNA polymerase III polC-type N-terminus II CO731_02801 PF14480 DNA polymerase III polC-type N-terminus I CO731_02801 PF14579 Helix-hairpin-helix motif CO731_02801 PF07733 Bacterial DNA polymerase III alpha NTPase domain CO731_02801 PF01336 OB-fold nucleic acid binding domain CO731_02801 PF00929 Exonuclease CO731_02801 PF02811 PHP domain CO731_02804 PF01321 Creatinase/Prolidase N-terminal domain CO731_02804 PF00557 Metallopeptidase family M24 CO731_02804 PF00557 Metallopeptidase family M24 CO731_02804 PF01321 Creatinase/Prolidase N-terminal domain CO731_02806 PF02630 SCO1/SenC CO731_02809 PF00132 Bacterial transferase hexapeptide (six repeats) CO731_02813 PF00580 UvrD/REP helicase N-terminal domain CO731_02813 PF13361 UvrD-like helicase C-terminal domain CO731_02815 PF01738 Dienelactone hydrolase family CO731_02818 PF01565 FAD binding domain CO731_02818 PF02913 FAD linked oxidases, C-terminal domain CO731_02827 PF07690 Major Facilitator Superfamily CO731_02828 PF17151 Periplasmic sensor domain CO731_02828 PF00990 Diguanylate cyclase, GGDEF domain CO731_02832 PF00303 Thymidylate synthase CO731_02834 PF00561 alpha/beta hydrolase fold CO731_02837 PF08448 PAS fold CO731_02837 PF00072 Response regulator receiver domain CO731_02837 PF00512 His Kinase A (phospho-acceptor) domain CO731_02837 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_02837 PF13188 PAS domain CO731_02838 PF00486 Transcriptional regulatory protein, C terminal CO731_02838 PF00072 Response regulator receiver domain CO731_02839 PF00186 Dihydrofolate reductase CO731_02840 PF12221 Bacterial membrane protein N terminal CO731_02840 PF01145 SPFH domain / Band 7 family CO731_02841 PF01145 SPFH domain / Band 7 family CO731_02843 PF13180 PDZ domain CO731_02846 PF13302 Acetyltransferase (GNAT) domain CO731_02849 PF00990 Diguanylate cyclase, GGDEF domain CO731_02851 PF00211 Adenylate and Guanylate cyclase catalytic domain CO731_02854 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CO731_02854 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CO731_02854 PF00205 Thiamine pyrophosphate enzyme, central domain CO731_02855 PF10369 Small subunit of acetolactate synthase CO731_02859 PF02979 Nitrile hydratase, alpha chain CO731_02860 PF02211 Nitrile hydratase beta subunit CO731_02863 PF14490 Helix-hairpin-helix containing domain CO731_02863 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CO731_02863 PF13538 UvrD-like helicase C-terminal domain CO731_02866 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CO731_02867 PF02705 K+ potassium transporter CO731_02869 PF00691 OmpA family CO731_02870 PF00440 Bacterial regulatory proteins, tetR family CO731_02870 PF13977 BetI-type transcriptional repressor, C-terminal CO731_02871 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CO731_02871 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CO731_02873 PF07886 BA14K-like protein CO731_02877 PF12704 MacB-like periplasmic core domain CO731_02877 PF02687 FtsX-like permease family CO731_02877 PF00005 ABC transporter CO731_02878 PF12704 MacB-like periplasmic core domain CO731_02878 PF02687 FtsX-like permease family CO731_02878 PF00005 ABC transporter CO731_02880 PF02567 Phenazine biosynthesis-like protein CO731_02882 PF04960 Glutaminase CO731_02883 PF01594 AI-2E family transporter CO731_02887 PF02082 Transcriptional regulator CO731_02888 PF00005 ABC transporter CO731_02889 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02890 PF00528 Binding-protein-dependent transport system inner membrane component CO731_02892 PF02277 Phosphoribosyltransferase CO731_02893 PF02654 Cobalamin-5-phosphate synthase CO731_02894 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CO731_02894 PF07685 CobB/CobQ-like glutamine amidotransferase domain CO731_02895 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CO731_02896 PF01888 CbiD CO731_02897 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CO731_02899 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CO731_02900 PF02571 Precorrin-6x reductase CbiJ/CobK CO731_02901 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CO731_02902 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CO731_02903 PF02570 Precorrin-8X methylmutase CO731_02904 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CO731_02905 PF02514 CobN/Magnesium Chelatase CO731_02906 PF02492 CobW/HypB/UreG, nucleotide-binding domain CO731_02906 PF07683 Cobalamin synthesis protein cobW C-terminal domain CO731_02908 PF06224 Winged helix DNA-binding domain CO731_02909 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CO731_02910 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CO731_02911 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CO731_02912 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CO731_02914 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CO731_02914 PF10531 SLBB domain CO731_02914 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CO731_02915 PF00829 Ribosomal prokaryotic L21 protein CO731_02916 PF00384 Molybdopterin oxidoreductase CO731_02916 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal CO731_02916 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CO731_02917 PF00146 NADH dehydrogenase CO731_02918 PF12838 4Fe-4S dicluster domain CO731_02919 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CO731_02920 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CO731_02921 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CO731_02921 PF00361 Proton-conducting membrane transporter CO731_02922 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus CO731_02922 PF00361 Proton-conducting membrane transporter CO731_02923 PF00361 Proton-conducting membrane transporter CO731_02924 PF02237 Biotin protein ligase C terminal domain CO731_02924 PF03099 Biotin/lipoate A/B protein ligase family CO731_02925 PF12706 Beta-lactamase superfamily domain CO731_02925 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CO731_02925 PF17770 Ribonuclease J C-terminal domain CO731_02928 PF03129 Anticodon binding domain CO731_02928 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CO731_02929 PF02687 FtsX-like permease family CO731_02929 PF12704 MacB-like periplasmic core domain CO731_02930 PF00005 ABC transporter CO731_02931 PF03099 Biotin/lipoate A/B protein ligase family CO731_02935 PF00403 Heavy-metal-associated domain CO731_02936 PF09278 MerR, DNA binding CO731_02936 PF00376 MerR family regulatory protein CO731_02937 PF00571 CBS domain CO731_02937 PF03448 MgtE intracellular N domain CO731_02937 PF01769 Divalent cation transporter CO731_02938 PF09278 MerR, DNA binding CO731_02938 PF00376 MerR family regulatory protein CO731_02940 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CO731_02942 PF04752 ChaC-like protein CO731_02945 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase CO731_02946 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP CO731_02946 PF12557 Cob(I)alamin adenosyltransferase N terminal CO731_02947 PF03186 CobD/Cbib protein CO731_02948 PF00155 Aminotransferase class I and II CO731_02951 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_02951 PF01266 FAD dependent oxidoreductase CO731_02951 PF16350 FAD dependent oxidoreductase central domain CO731_02951 PF01571 Aminomethyltransferase folate-binding domain CO731_02952 PF00155 Aminotransferase class I and II CO731_02953 PF13419 Haloacid dehalogenase-like hydrolase CO731_02954 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_02954 PF01266 FAD dependent oxidoreductase CO731_02954 PF01571 Aminomethyltransferase folate-binding domain CO731_02954 PF16350 FAD dependent oxidoreductase central domain CO731_02957 PF01042 Endoribonuclease L-PSP CO731_02960 PF01571 Aminomethyltransferase folate-binding domain CO731_02960 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_02960 PF17806 Sarcosine oxidase A3 domain CO731_02960 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_02962 PF01266 FAD dependent oxidoreductase CO731_02963 PF12795 Mechanosensitive ion channel porin domain CO731_02963 PF00924 Mechanosensitive ion channel CO731_02963 PF12794 Mechanosensitive ion channel inner membrane domain 1 CO731_02966 PF04030 D-arabinono-1,4-lactone oxidase CO731_02966 PF01565 FAD binding domain CO731_02968 PF16363 GDP-mannose 4,6 dehydratase CO731_02969 PF00202 Aminotransferase class-III CO731_02971 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_02971 PF01571 Aminomethyltransferase folate-binding domain CO731_02971 PF16350 FAD dependent oxidoreductase central domain CO731_02971 PF01266 FAD dependent oxidoreductase CO731_02974 PF12833 Helix-turn-helix domain CO731_02974 PF01965 DJ-1/PfpI family CO731_02977 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_02977 PF03466 LysR substrate binding domain CO731_02982 PF00809 Pterin binding enzyme CO731_02982 PF02965 Vitamin B12 dependent methionine synthase, activation domain CO731_02982 PF02607 B12 binding domain CO731_02982 PF02310 B12 binding domain CO731_02982 PF02574 Homocysteine S-methyltransferase CO731_02986 PF00551 Formyl transferase CO731_02986 PF02911 Formyl transferase, C-terminal domain CO731_02987 PF06055 Exopolysaccharide synthesis, ExoD CO731_02991 PF02607 B12 binding domain CO731_02991 PF02310 B12 binding domain CO731_02992 PF06253 Trimethylamine methyltransferase (MTTB) CO731_02994 PF00392 Bacterial regulatory proteins, gntR family CO731_02994 PF07729 FCD domain CO731_02995 PF07690 Major Facilitator Superfamily CO731_02997 PF08281 Sigma-70, region 4 CO731_02997 PF04542 Sigma-70 region 2 CO731_02998 PF12450 von Willebrand factor CO731_02998 PF12034 Domain of unknown function (DUF3520) CO731_02998 PF00092 von Willebrand factor type A domain CO731_03002 PF02965 Vitamin B12 dependent methionine synthase, activation domain CO731_03002 PF02607 B12 binding domain CO731_03002 PF02574 Homocysteine S-methyltransferase CO731_03002 PF00809 Pterin binding enzyme CO731_03002 PF02310 B12 binding domain CO731_03003 PF09347 Domain of unknown function (DUF1989) CO731_03007 PF00557 Metallopeptidase family M24 CO731_03008 PF01571 Aminomethyltransferase folate-binding domain CO731_03008 PF01266 FAD dependent oxidoreductase CO731_03008 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_03008 PF16350 FAD dependent oxidoreductase central domain CO731_03009 PF01042 Endoribonuclease L-PSP CO731_03010 PF06253 Trimethylamine methyltransferase (MTTB) CO731_03013 PF00202 Aminotransferase class-III CO731_03017 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CO731_03017 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CO731_03018 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CO731_03018 PF02770 Acyl-CoA dehydrogenase, middle domain CO731_03018 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CO731_03019 PF07685 CobB/CobQ-like glutamine amidotransferase domain CO731_03021 PF12833 Helix-turn-helix domain CO731_03022 PF01925 Sulfite exporter TauE/SafE CO731_03024 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_03024 PF00005 ABC transporter CO731_03026 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03027 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_03028 PF01546 Peptidase family M20/M25/M40 CO731_03028 PF07687 Peptidase dimerisation domain CO731_03030 PF00034 Cytochrome c CO731_03030 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CO731_03031 PF01593 Flavin containing amine oxidoreductase CO731_03034 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CO731_03034 PF01568 Molydopterin dinucleotide binding domain CO731_03034 PF00384 Molybdopterin oxidoreductase CO731_03035 PF12800 4Fe-4S binding domain CO731_03035 PF13247 4Fe-4S dicluster domain CO731_03037 PF03279 Bacterial lipid A biosynthesis acyltransferase CO731_03038 PF08240 Alcohol dehydrogenase GroES-like domain CO731_03038 PF00107 Zinc-binding dehydrogenase CO731_03039 PF02801 Beta-ketoacyl synthase, C-terminal domain CO731_03039 PF00109 Beta-ketoacyl synthase, N-terminal domain CO731_03040 PF02801 Beta-ketoacyl synthase, C-terminal domain CO731_03040 PF00109 Beta-ketoacyl synthase, N-terminal domain CO731_03041 PF00550 Phosphopantetheine attachment site CO731_03044 PF00171 Aldehyde dehydrogenase family CO731_03046 PF03150 Di-haem cytochrome c peroxidase CO731_03047 PF01037 Lrp/AsnC ligand binding domain CO731_03048 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CO731_03048 PF00171 Aldehyde dehydrogenase family CO731_03048 PF14850 DNA-binding domain of Proline dehydrogenase CO731_03048 PF01619 Proline dehydrogenase CO731_03053 PF07715 TonB-dependent Receptor Plug Domain CO731_03053 PF00593 TonB dependent receptor CO731_03055 PF05171 Haemin-degrading HemS.ChuX domain CO731_03056 PF01497 Periplasmic binding protein CO731_03057 PF01032 FecCD transport family CO731_03058 PF00005 ABC transporter CO731_03059 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CO731_03060 PF01171 PP-loop family CO731_03061 PF07690 Major Facilitator Superfamily CO731_03062 PF00462 Glutaredoxin CO731_03064 PF08241 Methyltransferase domain CO731_03066 PF00586 AIR synthase related protein, N-terminal domain CO731_03066 PF02769 AIR synthase related protein, C-terminal domain CO731_03066 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CO731_03071 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CO731_03072 PF01259 SAICAR synthetase CO731_03074 PF03328 HpcH/HpaI aldolase/citrate lyase family CO731_03076 PF02082 Transcriptional regulator CO731_03078 PF04286 Protein of unknown function (DUF445) CO731_03082 PF01557 Fumarylacetoacetate (FAA) hydrolase family CO731_03083 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_03083 PF01799 [2Fe-2S] binding domain CO731_03084 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CO731_03084 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CO731_03085 PF03450 CO dehydrogenase flavoprotein C-terminal domain CO731_03085 PF00941 FAD binding domain in molybdopterin dehydrogenase CO731_03087 PF01070 FMN-dependent dehydrogenase CO731_03088 PF04304 Protein of unknown function (DUF454) CO731_03090 PF00535 Glycosyl transferase family 2 CO731_03094 PF03743 Bacterial conjugation TrbI-like protein CO731_03097 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO731_03100 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO731_03103 PF00437 Type II/IV secretion system protein CO731_03106 PF02534 Type IV secretory system Conjugative DNA transfer CO731_03109 PF05717 IS66 Orf2 like protein CO731_03110 PF13817 IS66 C-terminal element CO731_03110 PF13005 zinc-finger binding domain of transposase IS66 CO731_03110 PF13007 Transposase C of IS166 homeodomain CO731_03110 PF03050 Transposase IS66 family CO731_03111 PF01464 Transglycosylase SLT domain CO731_03119 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CO731_03120 PF00005 ABC transporter CO731_03121 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03122 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03123 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_03126 PF03472 Autoinducer binding domain CO731_03126 PF00196 Bacterial regulatory proteins, luxR family CO731_03127 PF00765 Autoinducer synthase CO731_03128 PF05284 Protein of unknown function (DUF736) CO731_03134 PF00107 Zinc-binding dehydrogenase CO731_03134 PF08240 Alcohol dehydrogenase GroES-like domain CO731_03135 PF01638 HxlR-like helix-turn-helix CO731_03137 PF03466 LysR substrate binding domain CO731_03137 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_03141 PF00583 Acetyltransferase (GNAT) family CO731_03143 PF00989 PAS fold CO731_03143 PF00512 His Kinase A (phospho-acceptor) domain CO731_03143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_03144 PF02954 Bacterial regulatory protein, Fis family CO731_03144 PF00158 Sigma-54 interaction domain CO731_03144 PF00072 Response regulator receiver domain CO731_03146 PF01568 Molydopterin dinucleotide binding domain CO731_03146 PF18465 Rieske 3Fe-4S CO731_03146 PF00384 Molybdopterin oxidoreductase CO731_03148 PF00665 Integrase core domain CO731_03149 PF00034 Cytochrome c CO731_03150 PF00994 Probable molybdopterin binding domain CO731_03150 PF03454 MoeA C-terminal region (domain IV) CO731_03150 PF03453 MoeA N-terminal region (domain I and II) CO731_03152 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03153 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03154 PF00005 ABC transporter CO731_03155 PF01895 PhoU domain CO731_03156 PF00486 Transcriptional regulatory protein, C terminal CO731_03156 PF00072 Response regulator receiver domain CO731_03160 PF03358 NADPH-dependent FMN reductase CO731_03161 PF03960 ArsC family CO731_03162 PF01758 Sodium Bile acid symporter family CO731_03164 PF00583 Acetyltransferase (GNAT) family CO731_03164 PF00696 Amino acid kinase family CO731_03168 PF01068 ATP dependent DNA ligase domain CO731_03168 PF04675 DNA ligase N terminus CO731_03168 PF04679 ATP dependent DNA ligase C terminal region CO731_03179 PF00005 ABC transporter CO731_03184 PF00011 Hsp20/alpha crystallin family CO731_03185 PF00156 Phosphoribosyl transferase domain CO731_03185 PF01738 Dienelactone hydrolase family CO731_03187 PF00696 Amino acid kinase family CO731_03188 PF12900 Pyridoxamine 5'-phosphate oxidase CO731_03189 PF00916 Sulfate permease family CO731_03189 PF01740 STAS domain CO731_03191 PF00753 Metallo-beta-lactamase superfamily CO731_03193 PF04143 Sulphur transport CO731_03195 PF00027 Cyclic nucleotide-binding domain CO731_03195 PF13545 Crp-like helix-turn-helix domain CO731_03203 PF13607 Succinyl-CoA ligase like flavodoxin domain CO731_03203 PF00583 Acetyltransferase (GNAT) family CO731_03203 PF13380 CoA binding domain CO731_03205 PF00403 Heavy-metal-associated domain CO731_03208 PF00689 Cation transporting ATPase, C-terminus CO731_03208 PF00690 Cation transporter/ATPase, N-terminus CO731_03209 PF02525 Flavodoxin-like fold CO731_03210 PF00512 His Kinase A (phospho-acceptor) domain CO731_03210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_03210 PF00989 PAS fold CO731_03211 PF00072 Response regulator receiver domain CO731_03211 PF00196 Bacterial regulatory proteins, luxR family CO731_03212 PF00027 Cyclic nucleotide-binding domain CO731_03212 PF13545 Crp-like helix-turn-helix domain CO731_03214 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CO731_03214 PF00753 Metallo-beta-lactamase superfamily CO731_03214 PF10996 Beta-Casp domain CO731_03215 PF00871 Acetokinase family CO731_03216 PF09364 XFP N-terminal domain CO731_03216 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase CO731_03216 PF09363 XFP C-terminal domain CO731_03218 PF00072 Response regulator receiver domain CO731_03218 PF00486 Transcriptional regulatory protein, C terminal CO731_03219 PF00672 HAMP domain CO731_03219 PF00512 His Kinase A (phospho-acceptor) domain CO731_03219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_03221 PF00665 Integrase core domain CO731_03222 PF00690 Cation transporter/ATPase, N-terminus CO731_03222 PF00689 Cation transporting ATPase, C-terminus CO731_03223 PF00696 Amino acid kinase family CO731_03224 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CO731_03224 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CO731_03226 PF13520 Amino acid permease CO731_03229 PF01207 Dihydrouridine synthase (Dus) CO731_03232 PF02277 Phosphoribosyltransferase CO731_03233 PF00989 PAS fold CO731_03233 PF00512 His Kinase A (phospho-acceptor) domain CO731_03233 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_03235 PF02798 Glutathione S-transferase, N-terminal domain CO731_03235 PF00043 Glutathione S-transferase, C-terminal domain CO731_03236 PF03167 Uracil DNA glycosylase superfamily CO731_03237 PF01037 Lrp/AsnC ligand binding domain CO731_03237 PF13404 AsnC-type helix-turn-helix domain CO731_03239 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CO731_03239 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CO731_03240 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03241 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03242 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_03244 PF12804 MobA-like NTP transferase domain CO731_03247 PF04055 Radical SAM superfamily CO731_03247 PF06463 Molybdenum Cofactor Synthesis C CO731_03250 PF01794 Ferric reductase like transmembrane component CO731_03251 PF01047 MarR family CO731_03252 PF00561 alpha/beta hydrolase fold CO731_03254 PF01471 Putative peptidoglycan binding domain CO731_03254 PF03734 L,D-transpeptidase catalytic domain CO731_03257 PF13419 Haloacid dehalogenase-like hydrolase CO731_03258 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CO731_03260 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_03260 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO731_03261 PF01474 Class-II DAHP synthetase family CO731_03264 PF07694 5TMR of 5TMR-LYT CO731_03264 PF00990 Diguanylate cyclase, GGDEF domain CO731_03266 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CO731_03267 PF01219 Prokaryotic diacylglycerol kinase CO731_03271 PF02540 NAD synthase CO731_03271 PF00795 Carbon-nitrogen hydrolase CO731_03274 PF00574 Clp protease CO731_03276 PF01022 Bacterial regulatory protein, arsR family CO731_03277 PF00005 ABC transporter CO731_03277 PF00664 ABC transporter transmembrane region CO731_03278 PF00749 tRNA synthetases class I (E and Q), catalytic domain CO731_03280 PF01515 Phosphate acetyl/butaryl transferase CO731_03280 PF03949 Malic enzyme, NAD binding domain CO731_03280 PF00390 Malic enzyme, N-terminal domain CO731_03281 PF00106 short chain dehydrogenase CO731_03284 PF13378 Enolase C-terminal domain-like CO731_03284 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CO731_03285 PF02405 Permease MlaE CO731_03286 PF00005 ABC transporter CO731_03288 PF02470 MlaD protein CO731_03288 PF03886 ABC-type transport auxiliary lipoprotein component CO731_03291 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_03292 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_03294 PF00809 Pterin binding enzyme CO731_03295 PF02152 Dihydroneopterin aldolase CO731_03296 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CO731_03299 PF00072 Response regulator receiver domain CO731_03300 PF00990 Diguanylate cyclase, GGDEF domain CO731_03300 PF00072 Response regulator receiver domain CO731_03303 PF00471 Ribosomal protein L33 CO731_03304 PF07690 Major Facilitator Superfamily CO731_03307 PF00575 S1 RNA binding domain CO731_03307 PF08206 Ribonuclease B OB domain CO731_03307 PF17876 Cold shock domain CO731_03307 PF00773 RNB domain CO731_03307 PF08461 Ribonuclease R winged-helix domain CO731_03308 PF13368 Topoisomerase C-terminal repeat CO731_03308 PF01396 Topoisomerase DNA binding C4 zinc finger CO731_03308 PF01131 DNA topoisomerase CO731_03308 PF01751 Toprim domain CO731_03310 PF02481 DNA recombination-mediator protein A CO731_03310 PF17782 DprA winged helix domain CO731_03311 PF02660 Glycerol-3-phosphate acyltransferase CO731_03312 PF01979 Amidohydrolase family CO731_03313 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CO731_03313 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CO731_03314 PF18158 Adaptive response protein AidB N-terminal domain CO731_03314 PF02770 Acyl-CoA dehydrogenase, middle domain CO731_03314 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CO731_03316 PF03652 Holliday junction resolvase CO731_03319 PF02686 Glu-tRNAGln amidotransferase C subunit CO731_03320 PF01425 Amidase CO731_03322 PF02698 DUF218 domain CO731_03324 PF03313 Serine dehydratase alpha chain CO731_03324 PF03315 Serine dehydratase beta chain CO731_03327 PF00226 DnaJ domain CO731_03327 PF05099 Tellurite resistance protein TerB CO731_03328 PF00768 D-alanyl-D-alanine carboxypeptidase CO731_03328 PF07943 Penicillin-binding protein 5, C-terminal domain CO731_03330 PF02617 ATP-dependent Clp protease adaptor protein ClpS CO731_03331 PF02861 Clp amino terminal domain, pathogenicity island component CO731_03331 PF10431 C-terminal, D2-small domain, of ClpB protein CO731_03331 PF17871 AAA lid domain CO731_03331 PF07724 AAA domain (Cdc48 subfamily) CO731_03331 PF00004 ATPase family associated with various cellular activities (AAA) CO731_03332 PF17158 Membrane-associated sensor, integral membrane domain CO731_03332 PF00990 Diguanylate cyclase, GGDEF domain CO731_03337 PF01230 HIT domain CO731_03338 PF00893 Small Multidrug Resistance protein CO731_03340 PF03009 Glycerophosphoryl diester phosphodiesterase family CO731_03344 PF00318 Ribosomal protein S2 CO731_03345 PF00889 Elongation factor TS CO731_03346 PF00696 Amino acid kinase family CO731_03347 PF01765 Ribosome recycling factor CO731_03348 PF01255 Putative undecaprenyl diphosphate synthase CO731_03350 PF17820 PDZ domain CO731_03350 PF02163 Peptidase family M50 CO731_03351 PF01103 Surface antigen CO731_03351 PF07244 Surface antigen variable number repeat CO731_03352 PF00132 Bacterial transferase hexapeptide (six repeats) CO731_03352 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CO731_03353 PF07977 FabA-like domain CO731_03354 PF00132 Bacterial transferase hexapeptide (six repeats) CO731_03354 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CO731_03355 PF06230 LpxI C-terminal domain CO731_03355 PF17930 LpxI N-terminal domain CO731_03356 PF02684 Lipid-A-disaccharide synthetase CO731_03357 PF00285 Citrate synthase, C-terminal domain CO731_03358 PF00749 tRNA synthetases class I (E and Q), catalytic domain CO731_03359 PF00753 Metallo-beta-lactamase superfamily CO731_03359 PF03772 Competence protein CO731_03360 PF01726 LexA DNA binding domain CO731_03360 PF00717 Peptidase S24-like CO731_03361 PF00994 Probable molybdopterin binding domain CO731_03361 PF03453 MoeA N-terminal region (domain I and II) CO731_03361 PF03454 MoeA C-terminal region (domain IV) CO731_03362 PF01967 MoaC family CO731_03363 PF00218 Indole-3-glycerol phosphate synthase CO731_03364 PF00591 Glycosyl transferase family, a/b domain CO731_03364 PF02885 Glycosyl transferase family, helical bundle domain CO731_03366 PF00121 Triosephosphate isomerase CO731_03367 PF03840 Preprotein translocase SecG subunit CO731_03369 PF06418 CTP synthase N-terminus CO731_03369 PF00117 Glutamine amidotransferase class-I CO731_03372 PF00793 DAHP synthetase I family CO731_03376 PF03952 Enolase, N-terminal domain CO731_03376 PF00113 Enolase, C-terminal TIM barrel domain CO731_03377 PF04977 Septum formation initiator CO731_03378 PF00676 Dehydrogenase E1 component CO731_03379 PF02779 Transketolase, pyrimidine binding domain CO731_03379 PF00364 Biotin-requiring enzyme CO731_03379 PF02780 Transketolase, C-terminal domain CO731_03380 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CO731_03380 PF00364 Biotin-requiring enzyme CO731_03380 PF02817 e3 binding domain CO731_03382 PF00583 Acetyltransferase (GNAT) family CO731_03383 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO731_03383 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_03385 PF04055 Radical SAM superfamily CO731_03385 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CO731_03386 PF03364 Polyketide cyclase / dehydrase and lipid transport CO731_03387 PF02464 Competence-damaged protein CO731_03388 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CO731_03388 PF02542 YgbB family CO731_03389 PF01207 Dihydrouridine synthase (Dus) CO731_03390 PF00989 PAS fold CO731_03390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_03390 PF00512 His Kinase A (phospho-acceptor) domain CO731_03391 PF00158 Sigma-54 interaction domain CO731_03391 PF00072 Response regulator receiver domain CO731_03391 PF02954 Bacterial regulatory protein, Fis family CO731_03392 PF00512 His Kinase A (phospho-acceptor) domain CO731_03392 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_03392 PF00672 HAMP domain CO731_03392 PF00989 PAS fold CO731_03393 PF00072 Response regulator receiver domain CO731_03393 PF00158 Sigma-54 interaction domain CO731_03393 PF02954 Bacterial regulatory protein, Fis family CO731_03394 PF02080 TrkA-C domain CO731_03394 PF02254 TrkA-N domain CO731_03395 PF01063 Amino-transferase class IV CO731_03396 PF17209 Hfq protein CO731_03397 PF01926 50S ribosome-binding GTPase CO731_03397 PF16360 GTP-binding GTPase Middle Region CO731_03397 PF13167 GTP-binding GTPase N-terminal CO731_03398 PF03819 MazG nucleotide pyrophosphohydrolase domain CO731_03399 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CO731_03400 PF01479 S4 domain CO731_03400 PF00849 RNA pseudouridylate synthase CO731_03401 PF13419 Haloacid dehalogenase-like hydrolase CO731_03403 PF00120 Glutamine synthetase, catalytic domain CO731_03403 PF03951 Glutamine synthetase, beta-Grasp domain CO731_03405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CO731_03408 PF00120 Glutamine synthetase, catalytic domain CO731_03408 PF03951 Glutamine synthetase, beta-Grasp domain CO731_03409 PF00543 Nitrogen regulatory protein P-II CO731_03410 PF03853 YjeF-related protein N-terminus CO731_03410 PF01256 Carbohydrate kinase CO731_03413 PF17760 UvrA interaction domain CO731_03413 PF17755 UvrA DNA-binding domain CO731_03415 PF01177 Asp/Glu/Hydantoin racemase CO731_03418 PF01569 PAP2 superfamily CO731_03419 PF00436 Single-strand binding protein family CO731_03422 PF01914 MarC family integral membrane protein CO731_03423 PF03989 DNA gyrase C-terminal domain, beta-propeller CO731_03423 PF00521 DNA gyrase/topoisomerase IV, subunit A CO731_03425 PF01467 Cytidylyltransferase-like CO731_03426 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CO731_03427 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CO731_03429 PF02547 Queuosine biosynthesis protein CO731_03430 PF01702 Queuine tRNA-ribosyltransferase CO731_03432 PF00291 Pyridoxal-phosphate dependent enzyme CO731_03437 PF14403 Circularly permuted ATP-grasp type 2 CO731_03438 PF14403 Circularly permuted ATP-grasp type 2 CO731_03438 PF04168 A predicted alpha-helical domain with a conserved ER motif. CO731_03442 PF00455 DeoR C terminal sensor domain CO731_03442 PF08220 DeoR-like helix-turn-helix domain CO731_03443 PF07886 BA14K-like protein CO731_03449 PF02683 Cytochrome C biogenesis protein transmembrane region CO731_03450 PF12804 MobA-like NTP transferase domain CO731_03450 PF00132 Bacterial transferase hexapeptide (six repeats) CO731_03451 PF01380 SIS domain CO731_03453 PF17191 RecG wedge domain CO731_03453 PF00270 DEAD/DEAH box helicase CO731_03453 PF00271 Helicase conserved C-terminal domain CO731_03455 PF17757 UvrB interaction domain CO731_03455 PF03461 TRCF domain CO731_03455 PF00271 Helicase conserved C-terminal domain CO731_03455 PF00270 DEAD/DEAH box helicase CO731_03455 PF02559 CarD-like/TRCF domain CO731_03458 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_03461 PF03547 Membrane transport protein CO731_03462 PF01494 FAD binding domain CO731_03463 PF01066 CDP-alcohol phosphatidyltransferase CO731_03464 PF08240 Alcohol dehydrogenase GroES-like domain CO731_03464 PF00107 Zinc-binding dehydrogenase CO731_03468 PF02608 ABC transporter substrate-binding protein PnrA-like CO731_03469 PF04055 Radical SAM superfamily CO731_03469 PF18693 TRAM domain CO731_03469 PF00919 Uncharacterized protein family UPF0004 CO731_03470 PF03741 Integral membrane protein TerC family CO731_03472 PF01476 LysM domain CO731_03472 PF01551 Peptidase family M23 CO731_03472 PF08525 Opacity-associated protein A N-terminal motif CO731_03476 PF00691 OmpA family CO731_03476 PF13505 Outer membrane protein beta-barrel domain CO731_03478 PF04717 Type VI secretion system, phage-baseplate injector CO731_03487 PF13505 Outer membrane protein beta-barrel domain CO731_03487 PF00691 OmpA family CO731_03498 PF10431 C-terminal, D2-small domain, of ClpB protein CO731_03498 PF07724 AAA domain (Cdc48 subfamily) CO731_03498 PF17871 AAA lid domain CO731_03498 PF00004 ATPase family associated with various cellular activities (AAA) CO731_03501 PF00069 Protein kinase domain CO731_03505 PF03466 LysR substrate binding domain CO731_03505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_03510 PF03330 Lytic transglycolase CO731_03510 PF05036 Sporulation related domain CO731_03511 PF00768 D-alanyl-D-alanine carboxypeptidase CO731_03511 PF07943 Penicillin-binding protein 5, C-terminal domain CO731_03512 PF02223 Thymidylate kinase CO731_03513 PF09115 DNA polymerase III, delta subunit, C terminal CO731_03514 PF08264 Anticodon-binding domain of tRNA CO731_03514 PF09334 tRNA synthetases class I (M) CO731_03515 PF01026 TatD related DNase CO731_03516 PF12706 Beta-lactamase superfamily domain CO731_03516 PF03099 Biotin/lipoate A/B protein ligase family CO731_03518 PF13936 Helix-turn-helix domain CO731_03518 PF00665 Integrase core domain CO731_03519 PF00970 Oxidoreductase FAD-binding domain CO731_03519 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_03519 PF00175 Oxidoreductase NAD-binding domain CO731_03520 PF00355 Rieske [2Fe-2S] domain CO731_03520 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CO731_03521 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_03521 PF03466 LysR substrate binding domain CO731_03522 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_03524 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_03524 PF00005 ABC transporter CO731_03525 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_03525 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03526 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03527 PF01266 FAD dependent oxidoreductase CO731_03531 PF01571 Aminomethyltransferase folate-binding domain CO731_03531 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_03531 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_03531 PF17806 Sarcosine oxidase A3 domain CO731_03532 PF04267 Sarcosine oxidase, delta subunit family CO731_03533 PF01266 FAD dependent oxidoreductase CO731_03534 PF16350 FAD dependent oxidoreductase central domain CO731_03534 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_03534 PF01571 Aminomethyltransferase folate-binding domain CO731_03534 PF01266 FAD dependent oxidoreductase CO731_03535 PF05199 GMC oxidoreductase CO731_03535 PF00732 GMC oxidoreductase CO731_03536 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CO731_03536 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CO731_03538 PF01266 FAD dependent oxidoreductase CO731_03538 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CO731_03539 PF00248 Aldo/keto reductase family CO731_03540 PF04198 Putative sugar-binding domain CO731_03541 PF02653 Branched-chain amino acid transport system / permease component CO731_03542 PF00005 ABC transporter CO731_03546 PF04143 Sulphur transport CO731_03548 PF04273 Putative phosphatase (DUF442) CO731_03548 PF00753 Metallo-beta-lactamase superfamily CO731_03549 PF00753 Metallo-beta-lactamase superfamily CO731_03549 PF04273 Putative phosphatase (DUF442) CO731_03550 PF00004 ATPase family associated with various cellular activities (AAA) CO731_03550 PF16193 AAA C-terminal domain CO731_03550 PF12002 MgsA AAA+ ATPase C terminal CO731_03551 PF00595 PDZ domain CO731_03552 PF01196 Ribosomal protein L17 CO731_03553 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CO731_03553 PF01000 RNA polymerase Rpb3/RpoA insert domain CO731_03553 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CO731_03554 PF00411 Ribosomal protein S11 CO731_03555 PF00416 Ribosomal protein S13/S18 CO731_03557 PF00344 SecY translocase CO731_03558 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CO731_03559 PF00327 Ribosomal protein L30p/L7e CO731_03560 PF03719 Ribosomal protein S5, C-terminal domain CO731_03560 PF00333 Ribosomal protein S5, N-terminal domain CO731_03561 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CO731_03562 PF00347 Ribosomal protein L6 CO731_03563 PF00410 Ribosomal protein S8 CO731_03564 PF00253 Ribosomal protein S14p/S29e CO731_03565 PF00673 ribosomal L5P family C-terminus CO731_03565 PF00281 Ribosomal protein L5 CO731_03566 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CO731_03566 PF00467 KOW motif CO731_03567 PF00238 Ribosomal protein L14p/L23e CO731_03568 PF00366 Ribosomal protein S17 CO731_03569 PF00831 Ribosomal L29 protein CO731_03570 PF00252 Ribosomal protein L16p/L10e CO731_03571 PF00189 Ribosomal protein S3, C-terminal domain CO731_03571 PF07650 KH domain CO731_03572 PF00237 Ribosomal protein L22p/L17e CO731_03573 PF00203 Ribosomal protein S19 CO731_03574 PF03947 Ribosomal Proteins L2, C-terminal domain CO731_03574 PF00181 Ribosomal Proteins L2, RNA binding domain CO731_03575 PF00276 Ribosomal protein L23 CO731_03576 PF00573 Ribosomal protein L4/L1 family CO731_03577 PF00297 Ribosomal protein L3 CO731_03578 PF00338 Ribosomal protein S10p/S20e CO731_03579 PF03143 Elongation factor Tu C-terminal domain CO731_03579 PF00009 Elongation factor Tu GTP binding domain CO731_03579 PF03144 Elongation factor Tu domain 2 CO731_03580 PF00679 Elongation factor G C-terminus CO731_03580 PF14492 Elongation Factor G, domain II CO731_03580 PF03764 Elongation factor G, domain IV CO731_03580 PF00009 Elongation factor Tu GTP binding domain CO731_03580 PF03144 Elongation factor Tu domain 2 CO731_03581 PF00177 Ribosomal protein S7p/S5e CO731_03582 PF00164 Ribosomal protein S12/S23 CO731_03584 PF13520 Amino acid permease CO731_03585 PF00623 RNA polymerase Rpb1, domain 2 CO731_03585 PF04983 RNA polymerase Rpb1, domain 3 CO731_03585 PF05000 RNA polymerase Rpb1, domain 4 CO731_03585 PF04997 RNA polymerase Rpb1, domain 1 CO731_03585 PF04998 RNA polymerase Rpb1, domain 5 CO731_03586 PF04565 RNA polymerase Rpb2, domain 3 CO731_03586 PF00562 RNA polymerase Rpb2, domain 6 CO731_03586 PF04561 RNA polymerase Rpb2, domain 2 CO731_03586 PF04563 RNA polymerase beta subunit CO731_03586 PF04560 RNA polymerase Rpb2, domain 7 CO731_03586 PF10385 RNA polymerase beta subunit external 1 domain CO731_03587 PF16320 Ribosomal protein L7/L12 dimerisation domain CO731_03587 PF00542 Ribosomal protein L7/L12 C-terminal domain CO731_03588 PF00466 Ribosomal protein L10 CO731_03589 PF00687 Ribosomal protein L1p/L10e family CO731_03590 PF03946 Ribosomal protein L11, N-terminal domain CO731_03590 PF00298 Ribosomal protein L11, RNA binding domain CO731_03591 PF00467 KOW motif CO731_03591 PF02357 Transcription termination factor nusG CO731_03592 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CO731_03596 PF00009 Elongation factor Tu GTP binding domain CO731_03596 PF03144 Elongation factor Tu domain 2 CO731_03596 PF03143 Elongation factor Tu C-terminal domain CO731_03599 PF08032 RNA 2'-O ribose methyltransferase substrate binding CO731_03599 PF00588 SpoU rRNA Methylase family CO731_03601 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CO731_03601 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CO731_03602 PF01261 Xylose isomerase-like TIM barrel CO731_03603 PF00205 Thiamine pyrophosphate enzyme, central domain CO731_03603 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CO731_03603 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CO731_03604 PF09339 IclR helix-turn-helix domain CO731_03604 PF01614 Bacterial transcriptional regulator CO731_03606 PF04073 Aminoacyl-tRNA editing domain CO731_03609 PF01513 ATP-NAD kinase CO731_03610 PF03880 DbpA RNA binding domain CO731_03610 PF00270 DEAD/DEAH box helicase CO731_03610 PF00271 Helicase conserved C-terminal domain CO731_03611 PF00691 OmpA family CO731_03611 PF13488 Glycine zipper CO731_03614 PF00472 RF-1 domain CO731_03614 PF03462 PCRF domain CO731_03616 PF17092 Penicillin-binding protein OB-like domain CO731_03616 PF00912 Transglycosylase CO731_03616 PF00905 Penicillin binding protein transpeptidase domain CO731_03618 PF11741 AMIN domain CO731_03618 PF01520 N-acetylmuramoyl-L-alanine amidase CO731_03619 PF10150 Ribonuclease E/G family CO731_03619 PF00575 S1 RNA binding domain CO731_03619 PF12111 Polyribonucleotide phosphorylase C terminal CO731_03620 PF05443 ROS/MUCR transcriptional regulator protein CO731_03626 PF00149 Calcineurin-like phosphoesterase CO731_03626 PF02872 5'-nucleotidase, C-terminal domain CO731_03627 PF01037 Lrp/AsnC ligand binding domain CO731_03628 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CO731_03628 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CO731_03629 PF01389 OmpA-like transmembrane domain CO731_03629 PF00691 OmpA family CO731_03633 PF00581 Rhodanese-like domain CO731_03634 PF01411 tRNA synthetases class II (A) CO731_03634 PF02272 DHHA1 domain CO731_03634 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CO731_03635 PF00291 Pyridoxal-phosphate dependent enzyme CO731_03638 PF00270 DEAD/DEAH box helicase CO731_03638 PF00271 Helicase conserved C-terminal domain CO731_03640 PF01048 Phosphorylase superfamily CO731_03641 PF00072 Response regulator receiver domain CO731_03641 PF13188 PAS domain CO731_03641 PF08448 PAS fold CO731_03641 PF00512 His Kinase A (phospho-acceptor) domain CO731_03641 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_03643 PF01258 Prokaryotic dksA/traR C4-type zinc finger CO731_03645 PF04317 YcjX-like family, DUF463 CO731_03646 PF05128 Domain of unknown function (DUF697) CO731_03649 PF00999 Sodium/hydrogen exchanger family CO731_03649 PF02254 TrkA-N domain CO731_03652 PF11799 impB/mucB/samB family C-terminal domain CO731_03652 PF00817 impB/mucB/samB family CO731_03654 PF17969 L,D-transpeptidase C-terminal domain CO731_03654 PF03734 L,D-transpeptidase catalytic domain CO731_03654 PF01476 LysM domain CO731_03656 PF00891 O-methyltransferase domain CO731_03657 PF02811 PHP domain CO731_03657 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CO731_03657 PF07733 Bacterial DNA polymerase III alpha NTPase domain CO731_03657 PF14579 Helix-hairpin-helix motif CO731_03658 PF08240 Alcohol dehydrogenase GroES-like domain CO731_03658 PF00107 Zinc-binding dehydrogenase CO731_03659 PF13673 Acetyltransferase (GNAT) domain CO731_03660 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CO731_03663 PF00174 Oxidoreductase molybdopterin binding domain CO731_03664 PF01571 Aminomethyltransferase folate-binding domain CO731_03664 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_03665 PF01597 Glycine cleavage H-protein CO731_03666 PF02347 Glycine cleavage system P-protein CO731_03668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_03668 PF00204 DNA gyrase B CO731_03668 PF01751 Toprim domain CO731_03668 PF00986 DNA gyrase B subunit, carboxyl terminus CO731_03671 PF03328 HpcH/HpaI aldolase/citrate lyase family CO731_03672 PF01613 Flavin reductase like domain CO731_03673 PF00881 Nitroreductase family CO731_03675 PF03129 Anticodon binding domain CO731_03675 PF02824 TGS domain CO731_03675 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CO731_03675 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CO731_03676 PF00905 Penicillin binding protein transpeptidase domain CO731_03677 PF01809 Putative membrane protein insertion efficiency factor CO731_03679 PF03466 LysR substrate binding domain CO731_03679 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_03681 PF01227 GTP cyclohydrolase I CO731_03682 PF01502 Phosphoribosyl-AMP cyclohydrolase CO731_03683 PF01734 Patatin-like phospholipase CO731_03684 PF02272 DHHA1 domain CO731_03684 PF01368 DHH family CO731_03684 PF17768 RecJ OB domain CO731_03685 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CO731_03686 PF00742 Homoserine dehydrogenase CO731_03686 PF03447 Homoserine dehydrogenase, NAD binding domain CO731_03686 PF01842 ACT domain CO731_03687 PF00155 Aminotransferase class I and II CO731_03689 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus CO731_03693 PF13505 Outer membrane protein beta-barrel domain CO731_03696 PF13505 Outer membrane protein beta-barrel domain CO731_03697 PF01546 Peptidase family M20/M25/M40 CO731_03697 PF07687 Peptidase dimerisation domain CO731_03699 PF00392 Bacterial regulatory proteins, gntR family CO731_03699 PF07729 FCD domain CO731_03701 PF00665 Integrase core domain CO731_03702 PF09084 NMT1/THI5 like CO731_03703 PF00005 ABC transporter CO731_03704 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03705 PF07729 FCD domain CO731_03705 PF00392 Bacterial regulatory proteins, gntR family CO731_03706 PF08274 PhnA Zinc-Ribbon CO731_03706 PF03831 PhnA domain CO731_03708 PF00557 Metallopeptidase family M24 CO731_03709 PF04002 RadC-like JAB domain CO731_03714 PF00529 HlyD membrane-fusion protein of T1SS CO731_03715 PF00005 ABC transporter CO731_03715 PF00664 ABC transporter transmembrane region CO731_03718 PF00072 Response regulator receiver domain CO731_03718 PF00196 Bacterial regulatory proteins, luxR family CO731_03722 PF00665 Integrase core domain CO731_03723 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO731_03726 PF03743 Bacterial conjugation TrbI-like protein CO731_03729 PF04002 RadC-like JAB domain CO731_03730 PF05698 Bacterial trigger factor protein (TF) C-terminus CO731_03730 PF05697 Bacterial trigger factor protein (TF) CO731_03730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CO731_03732 PF00534 Glycosyl transferases group 1 CO731_03732 PF13439 Glycosyltransferase Family 4 CO731_03738 PF01134 Glucose inhibited division protein A CO731_03739 PF00958 GMP synthase C terminal domain CO731_03739 PF00117 Glutamine amidotransferase class-I CO731_03739 PF13302 Acetyltransferase (GNAT) domain CO731_03739 PF13673 Acetyltransferase (GNAT) domain CO731_03739 PF03352 Methyladenine glycosylase CO731_03742 PF02355 Protein export membrane protein CO731_03742 PF07549 SecD/SecF GG Motif CO731_03743 PF02699 Preprotein translocase subunit CO731_03745 PF01476 LysM domain CO731_03745 PF01551 Peptidase family M23 CO731_03747 PF01975 Survival protein SurE CO731_03748 PF02403 Seryl-tRNA synthetase N-terminal domain CO731_03748 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CO731_03749 PF00902 Sec-independent protein translocase protein (TatC) CO731_03750 PF02416 mttA/Hcf106 family CO731_03751 PF02416 mttA/Hcf106 family CO731_03752 PF00005 ABC transporter CO731_03752 PF17845 FbpC C-terminal regulatory nucleotide binding domain CO731_03753 PF04079 Segregation and condensation complex subunit ScpB CO731_03754 PF02616 Segregation and condensation protein ScpA CO731_03755 PF00933 Glycosyl hydrolase family 3 N terminal domain CO731_03757 PF03485 Arginyl tRNA synthetase N terminal domain CO731_03757 PF05746 DALR anticodon binding domain CO731_03757 PF00750 tRNA synthetases class I (R) CO731_03758 PF13286 Phosphohydrolase-associated domain CO731_03758 PF01966 HD domain CO731_03759 PF01521 Iron-sulphur cluster biosynthesis CO731_03762 PF00860 Permease family CO731_03763 PF03372 Endonuclease/Exonuclease/phosphatase family CO731_03764 PF08238 Sel1 repeat CO731_03766 PF10458 Valyl tRNA synthetase tRNA binding arm CO731_03766 PF08264 Anticodon-binding domain of tRNA CO731_03766 PF00133 tRNA synthetases class I (I, L, M and V) CO731_03768 PF02321 Outer membrane efflux protein CO731_03773 PF01546 Peptidase family M20/M25/M40 CO731_03779 PF00155 Aminotransferase class I and II CO731_03782 PF01220 Dehydroquinase class II CO731_03783 PF00364 Biotin-requiring enzyme CO731_03784 PF02785 Biotin carboxylase C-terminal domain CO731_03784 PF00289 Biotin carboxylase, N-terminal domain CO731_03784 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CO731_03785 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CO731_03790 PF02548 Ketopantoate hydroxymethyltransferase CO731_03791 PF02569 Pantoate-beta-alanine ligase CO731_03792 PF13673 Acetyltransferase (GNAT) domain CO731_03793 PF02934 GatB/GatE catalytic domain CO731_03793 PF02637 GatB domain CO731_03794 PF09857 Putative toxin of bacterial toxin-antitoxin pair CO731_03795 PF00571 CBS domain CO731_03795 PF00478 IMP dehydrogenase / GMP reductase domain CO731_03800 PF00132 Bacterial transferase hexapeptide (six repeats) CO731_03803 PF06426 Serine acetyltransferase, N-terminal CO731_03803 PF00132 Bacterial transferase hexapeptide (six repeats) CO731_03804 PF00378 Enoyl-CoA hydratase/isomerase CO731_03806 PF00561 alpha/beta hydrolase fold CO731_03808 PF00313 'Cold-shock' DNA-binding domain CO731_03809 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CO731_03811 PF00585 C-terminal regulatory domain of Threonine dehydratase CO731_03811 PF00291 Pyridoxal-phosphate dependent enzyme CO731_03812 PF02386 Cation transport protein CO731_03815 PF01979 Amidohydrolase family CO731_03815 PF13382 Adenine deaminase C-terminal domain CO731_03816 PF02743 Cache domain CO731_03816 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_03816 PF00512 His Kinase A (phospho-acceptor) domain CO731_03817 PF00072 Response regulator receiver domain CO731_03817 PF02954 Bacterial regulatory protein, Fis family CO731_03817 PF00158 Sigma-54 interaction domain CO731_03818 PF03401 Tripartite tricarboxylate transporter family receptor CO731_03820 PF01970 Tripartite tricarboxylate transporter TctA family CO731_03826 PF12697 Alpha/beta hydrolase family CO731_03827 PF03358 NADPH-dependent FMN reductase CO731_03828 PF18146 Damage-inducible protein CinA KH domain CO731_03828 PF02464 Competence-damaged protein CO731_03828 PF00994 Probable molybdopterin binding domain CO731_03830 PF00156 Phosphoribosyl transferase domain CO731_03832 PF02867 Ribonucleotide reductase, barrel domain CO731_03832 PF08471 Class II vitamin B12-dependent ribonucleotide reductase CO731_03835 PF03061 Thioesterase superfamily CO731_03837 PF03601 Conserved hypothetical protein 698 CO731_03838 PF03466 LysR substrate binding domain CO731_03838 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_03839 PF12951 Passenger-associated-transport-repeat CO731_03840 PF00455 DeoR C terminal sensor domain CO731_03840 PF08220 DeoR-like helix-turn-helix domain CO731_03843 PF00364 Biotin-requiring enzyme CO731_03843 PF00561 alpha/beta hydrolase fold CO731_03850 PF00132 Bacterial transferase hexapeptide (six repeats) CO731_03850 PF12804 MobA-like NTP transferase domain CO731_03851 PF02625 XdhC and CoxI family CO731_03851 PF13478 XdhC Rossmann domain CO731_03855 PF01613 Flavin reductase like domain CO731_03856 PF13458 Periplasmic binding protein CO731_03857 PF03576 Peptidase family S58 CO731_03860 PF00206 Lyase CO731_03860 PF10397 Adenylosuccinate lyase C-terminus CO731_03861 PF00163 Ribosomal protein S4/S9 N-terminal domain CO731_03861 PF01479 S4 domain CO731_03862 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA CO731_03863 PF01638 HxlR-like helix-turn-helix CO731_03866 PF01177 Asp/Glu/Hydantoin racemase CO731_03868 PF00180 Isocitrate/isopropylmalate dehydrogenase CO731_03870 PF02272 DHHA1 domain CO731_03870 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CO731_03870 PF01411 tRNA synthetases class II (A) CO731_03871 PF00154 recA bacterial DNA recombination protein CO731_03872 PF00294 pfkB family carbohydrate kinase CO731_03873 PF04227 Indigoidine synthase A like protein CO731_03876 PF01521 Iron-sulphur cluster biosynthesis CO731_03877 PF01883 Iron-sulfur cluster assembly protein CO731_03878 PF00266 Aminotransferase class-V CO731_03879 PF01458 Uncharacterized protein family (UPF0051) CO731_03880 PF00005 ABC transporter CO731_03882 PF01458 Uncharacterized protein family (UPF0051) CO731_03883 PF00266 Aminotransferase class-V CO731_03884 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CO731_03888 PF03702 Anhydro-N-acetylmuramic acid kinase CO731_03889 PF00579 tRNA synthetases class I (W and Y) CO731_03891 PF00578 AhpC/TSA family CO731_03892 PF01551 Peptidase family M23 CO731_03892 PF01476 LysM domain CO731_03892 PF08525 Opacity-associated protein A N-terminal motif CO731_03895 PF01242 6-pyruvoyl tetrahydropterin synthase CO731_03897 PF08448 PAS fold CO731_03897 PF00990 Diguanylate cyclase, GGDEF domain CO731_03897 PF00563 EAL domain CO731_03897 PF08447 PAS fold CO731_03898 PF00990 Diguanylate cyclase, GGDEF domain CO731_03898 PF17151 Periplasmic sensor domain CO731_03900 PF02445 Quinolinate synthetase A protein CO731_03901 PF02910 Fumarate reductase flavoprotein C-term CO731_03901 PF00890 FAD binding domain CO731_03902 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CO731_03902 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CO731_03903 PF04055 Radical SAM superfamily CO731_03903 PF06968 Biotin and Thiamin Synthesis associated domain CO731_03904 PF00155 Aminotransferase class I and II CO731_03906 PF00202 Aminotransferase class-III CO731_03907 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CO731_03907 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CO731_03908 PF02261 Aspartate decarboxylase CO731_03911 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_03911 PF00005 ABC transporter CO731_03912 PF00005 ABC transporter CO731_03912 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_03914 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03916 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_03917 PF01321 Creatinase/Prolidase N-terminal domain CO731_03917 PF00557 Metallopeptidase family M24 CO731_03919 PF00216 Bacterial DNA-binding protein CO731_03920 PF02190 ATP-dependent protease La (LON) substrate-binding domain CO731_03920 PF05362 Lon protease (S16) C-terminal proteolytic domain CO731_03920 PF00004 ATPase family associated with various cellular activities (AAA) CO731_03921 PF10431 C-terminal, D2-small domain, of ClpB protein CO731_03921 PF06689 ClpX C4-type zinc finger CO731_03921 PF07724 AAA domain (Cdc48 subfamily) CO731_03922 PF00574 Clp protease CO731_03924 PF00132 Bacterial transferase hexapeptide (six repeats) CO731_03926 PF01053 Cys/Met metabolism PLP-dependent enzyme CO731_03929 PF00378 Enoyl-CoA hydratase/isomerase CO731_03931 PF00572 Ribosomal protein L13 CO731_03932 PF00380 Ribosomal protein S9/S16 CO731_03934 PF03009 Glycerophosphoryl diester phosphodiesterase family CO731_03935 PF00491 Arginase family CO731_03936 PF01118 Semialdehyde dehydrogenase, NAD binding domain CO731_03937 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase CO731_03938 PF02628 Cytochrome oxidase assembly protein CO731_03944 PF00534 Glycosyl transferases group 1 CO731_03944 PF13439 Glycosyltransferase Family 4 CO731_03945 PF02397 Bacterial sugar transferase CO731_03952 PF13411 MerR HTH family regulatory protein CO731_03953 PF00216 Bacterial DNA-binding protein CO731_03954 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CO731_03954 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CO731_03955 PF02504 Fatty acid synthesis protein CO731_03958 PF04355 SmpA / OmlA family CO731_03959 PF03030 Inorganic H+ pyrophosphatase CO731_03961 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03962 PF00005 ABC transporter CO731_03963 PF00528 Binding-protein-dependent transport system inner membrane component CO731_03964 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CO731_03965 PF07690 Major Facilitator Superfamily CO731_03966 PF01029 NusB family CO731_03967 PF00885 6,7-dimethyl-8-ribityllumazine synthase CO731_03968 PF00677 Lumazine binding domain CO731_03969 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CO731_03969 PF01872 RibD C-terminal domain CO731_03970 PF03477 ATP cone domain CO731_03971 PF00464 Serine hydroxymethyltransferase CO731_03972 PF03734 L,D-transpeptidase catalytic domain CO731_03972 PF01471 Putative peptidoglycan binding domain CO731_03975 PF00378 Enoyl-CoA hydratase/isomerase CO731_03976 PF00490 Delta-aminolevulinic acid dehydratase CO731_03978 PF04377 Arginine-tRNA-protein transferase, C terminus CO731_03978 PF04376 Arginine-tRNA-protein transferase, N terminus CO731_03980 PF01594 AI-2E family transporter CO731_03981 PF00521 DNA gyrase/topoisomerase IV, subunit A CO731_03981 PF03989 DNA gyrase C-terminal domain, beta-propeller CO731_03983 PF01336 OB-fold nucleic acid binding domain CO731_03983 PF00152 tRNA synthetases class II (D, K and N) CO731_03983 PF02938 GAD domain CO731_03984 PF00583 Acetyltransferase (GNAT) family CO731_03986 PF01612 3'-5' exonuclease CO731_03986 PF00570 HRDC domain CO731_03990 PF00571 CBS domain CO731_03990 PF00478 IMP dehydrogenase / GMP reductase domain CO731_03991 PF07690 Major Facilitator Superfamily CO731_03992 PF01728 FtsJ-like methyltransferase CO731_03993 PF02541 Ppx/GppA phosphatase family CO731_03996 PF01053 Cys/Met metabolism PLP-dependent enzyme CO731_03997 PF00501 AMP-binding enzyme CO731_03997 PF14535 AMP-binding enzyme C-terminal domain CO731_03999 PF13191 AAA ATPase domain CO731_03999 PF00069 Protein kinase domain CO731_04001 PF01968 Hydantoinase/oxoprolinase CO731_04001 PF05378 Hydantoinase/oxoprolinase N-terminal region CO731_04002 PF08402 TOBE domain CO731_04002 PF00005 ABC transporter CO731_04004 PF00528 Binding-protein-dependent transport system inner membrane component CO731_04005 PF00528 Binding-protein-dependent transport system inner membrane component CO731_04008 PF02653 Branched-chain amino acid transport system / permease component CO731_04011 PF00962 Adenosine/AMP deaminase CO731_04014 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_04014 PF00175 Oxidoreductase NAD-binding domain CO731_04017 PF00962 Adenosine/AMP deaminase CO731_04018 PF12833 Helix-turn-helix domain CO731_04020 PF02653 Branched-chain amino acid transport system / permease component CO731_04022 PF02608 ABC transporter substrate-binding protein PnrA-like CO731_04024 PF12833 Helix-turn-helix domain CO731_04025 PF02530 Porin subfamily CO731_04026 PF00464 Serine hydroxymethyltransferase CO731_04027 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CO731_04027 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CO731_04028 PF00266 Aminotransferase class-V CO731_04030 PF01571 Aminomethyltransferase folate-binding domain CO731_04030 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_04031 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CO731_04031 PF00361 Proton-conducting membrane transporter CO731_04031 PF13244 Domain of unknown function (DUF4040) CO731_04031 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CO731_04032 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CO731_04033 PF00361 Proton-conducting membrane transporter CO731_04034 PF01899 Na+/H+ ion antiporter subunit CO731_04035 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CO731_04036 PF03334 Na+/H+ antiporter subunit CO731_04038 PF02540 NAD synthase CO731_04039 PF13193 AMP-binding enzyme C-terminal domain CO731_04039 PF00501 AMP-binding enzyme CO731_04041 PF13537 Glutamine amidotransferase domain CO731_04041 PF00733 Asparagine synthase CO731_04042 PF05175 Methyltransferase small domain CO731_04042 PF17827 PrmC N-terminal domain CO731_04048 PF00722 Glycosyl hydrolases family 16 CO731_04051 PF01580 FtsK/SpoIIIE family CO731_04051 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CO731_04051 PF17854 FtsK alpha domain CO731_04051 PF09397 Ftsk gamma domain CO731_04052 PF00480 ROK family CO731_04053 PF01547 Bacterial extracellular solute-binding protein CO731_04054 PF00528 Binding-protein-dependent transport system inner membrane component CO731_04055 PF00528 Binding-protein-dependent transport system inner membrane component CO731_04058 PF08402 TOBE domain CO731_04058 PF00005 ABC transporter CO731_04059 PF00860 Permease family CO731_04060 PF00034 Cytochrome c CO731_04060 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CO731_04061 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CO731_04061 PF01266 FAD dependent oxidoreductase CO731_04062 PF00005 ABC transporter CO731_04062 PF17912 MalK OB fold domain CO731_04063 PF17912 MalK OB fold domain CO731_04063 PF00005 ABC transporter CO731_04064 PF00528 Binding-protein-dependent transport system inner membrane component CO731_04065 PF00528 Binding-protein-dependent transport system inner membrane component CO731_04068 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CO731_04068 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CO731_04069 PF03060 Nitronate monooxygenase CO731_04070 PF01578 Cytochrome C assembly protein CO731_04071 PF00664 ABC transporter transmembrane region CO731_04071 PF00005 ABC transporter CO731_04072 PF10091 Putative glucoamylase CO731_04072 PF06165 Glycosyltransferase family 36 CO731_04072 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CO731_04073 PF03358 NADPH-dependent FMN reductase CO731_04074 PF05962 HutD CO731_04075 PF17391 Urocanase N-terminal domain CO731_04075 PF17392 Urocanase C-terminal domain CO731_04075 PF01175 Urocanase Rossmann-like domain CO731_04077 PF00221 Aromatic amino acid lyase CO731_04078 PF01979 Amidohydrolase family CO731_04081 PF01042 Endoribonuclease L-PSP CO731_04082 PF00005 ABC transporter CO731_04083 PF00950 ABC 3 transport family CO731_04084 PF01297 Zinc-uptake complex component A periplasmic CO731_04091 PF12706 Beta-lactamase superfamily domain CO731_04093 PF00107 Zinc-binding dehydrogenase CO731_04093 PF08240 Alcohol dehydrogenase GroES-like domain CO731_04094 PF00155 Aminotransferase class I and II CO731_04096 PF13378 Enolase C-terminal domain-like CO731_04096 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CO731_04098 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CO731_04098 PF02770 Acyl-CoA dehydrogenase, middle domain CO731_04098 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CO731_04099 PF03466 LysR substrate binding domain CO731_04099 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_04100 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CO731_04101 PF14489 QueF-like protein CO731_04104 PF06253 Trimethylamine methyltransferase (MTTB) CO731_04105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_04105 PF03466 LysR substrate binding domain CO731_04106 PF01119 DNA mismatch repair protein, C-terminal domain CO731_04106 PF08676 MutL C terminal dimerisation domain CO731_04108 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CO731_04109 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CO731_04112 PF00459 Inositol monophosphatase family CO731_04113 PF01523 Putative modulator of DNA gyrase CO731_04114 PF01554 MatE CO731_04115 PF01734 Patatin-like phospholipase CO731_04116 PF05193 Peptidase M16 inactive domain CO731_04117 PF00675 Insulinase (Peptidase family M16) CO731_04117 PF05193 Peptidase M16 inactive domain CO731_04120 PF00849 RNA pseudouridylate synthase CO731_04120 PF01479 S4 domain CO731_04121 PF14437 MafB19-like deaminase CO731_04123 PF08264 Anticodon-binding domain of tRNA CO731_04123 PF00133 tRNA synthetases class I (I, L, M and V) CO731_04126 PF01687 Riboflavin kinase CO731_04126 PF06574 FAD synthetase CO731_04129 PF07690 Major Facilitator Superfamily CO731_04130 PF13533 Biotin-lipoyl like CO731_04132 PF13462 Thioredoxin CO731_04132 PF06965 Na+/H+ antiporter 1 CO731_04133 PF00166 Chaperonin 10 Kd subunit CO731_04134 PF00118 TCP-1/cpn60 chaperonin family CO731_04136 PF05532 CsbD-like CO731_04137 PF00206 Lyase CO731_04137 PF10415 Fumarase C C-terminus CO731_04138 PF07681 DoxX CO731_04140 PF02541 Ppx/GppA phosphatase family CO731_04141 PF02503 Polyphosphate kinase middle domain CO731_04141 PF13089 Polyphosphate kinase N-terminal domain CO731_04141 PF17941 Polyphosphate kinase C-terminal domain 1 CO731_04141 PF13090 Polyphosphate kinase C-terminal domain 2 CO731_04143 PF01494 FAD binding domain CO731_04145 PF00005 ABC transporter CO731_04146 PF00528 Binding-protein-dependent transport system inner membrane component CO731_04147 PF00528 Binding-protein-dependent transport system inner membrane component CO731_04148 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_04150 PF01053 Cys/Met metabolism PLP-dependent enzyme CO731_04158 PF07729 FCD domain CO731_04158 PF00392 Bacterial regulatory proteins, gntR family CO731_04159 PF00701 Dihydrodipicolinate synthetase family CO731_04160 PF00920 Dehydratase family CO731_04161 PF03480 Bacterial extracellular solute-binding protein, family 7 CO731_04162 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CO731_04163 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CO731_04164 PF05035 2-keto-3-deoxy-galactonokinase CO731_04165 PF01081 KDPG and KHG aldolase CO731_04169 PF01594 AI-2E family transporter CO731_04170 PF01066 CDP-alcohol phosphatidyltransferase CO731_04171 PF02769 AIR synthase related protein, C-terminal domain CO731_04171 PF00586 AIR synthase related protein, N-terminal domain CO731_04172 PF00551 Formyl transferase CO731_04174 PF01545 Cation efflux family CO731_04175 PF01568 Molydopterin dinucleotide binding domain CO731_04175 PF00384 Molybdopterin oxidoreductase CO731_04175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CO731_04176 PF12848 ABC transporter CO731_04176 PF00005 ABC transporter CO731_04180 PF00334 Nucleoside diphosphate kinase CO731_04181 PF09619 Type III secretion system lipoprotein chaperone (YscW) CO731_04182 PF02391 MoaE protein CO731_04184 PF01066 CDP-alcohol phosphatidyltransferase CO731_04185 PF01541 GIY-YIG catalytic domain CO731_04185 PF02151 UvrB/uvrC motif CO731_04185 PF08459 UvrC Helix-hairpin-helix N-terminal CO731_04187 PF13505 Outer membrane protein beta-barrel domain CO731_04188 PF00043 Glutathione S-transferase, C-terminal domain CO731_04188 PF13417 Glutathione S-transferase, N-terminal domain CO731_04189 PF00445 Ribonuclease T2 family CO731_04191 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CO731_04194 PF02627 Carboxymuconolactone decarboxylase family CO731_04196 PF02789 Cytosol aminopeptidase family, N-terminal domain CO731_04196 PF00883 Cytosol aminopeptidase family, catalytic domain CO731_04201 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CO731_04202 PF00398 Ribosomal RNA adenine dimethylase CO731_04203 PF00625 Guanylate kinase CO731_04204 PF03755 YicC-like family, N-terminal region CO731_04204 PF08340 Domain of unknown function (DUF1732) CO731_04205 PF02618 YceG-like family CO731_04206 PF02801 Beta-ketoacyl synthase, C-terminal domain CO731_04206 PF00109 Beta-ketoacyl synthase, N-terminal domain CO731_04207 PF00550 Phosphopantetheine attachment site CO731_04209 PF00698 Acyl transferase domain CO731_04210 PF00884 Sulfatase CO731_04211 PF01250 Ribosomal protein S6 CO731_04212 PF01084 Ribosomal protein S18 CO731_04213 PF01281 Ribosomal protein L9, N-terminal domain CO731_04213 PF03948 Ribosomal protein L9, C-terminal domain CO731_04215 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CO731_04217 PF00772 DnaB-like helicase N terminal domain CO731_04217 PF03796 DnaB-like helicase C terminal domain CO731_04218 PF06745 KaiC CO731_04218 PF18073 Rubredoxin metal binding domain CO731_04221 PF07690 Major Facilitator Superfamily CO731_04222 PF00156 Phosphoribosyl transferase domain CO731_04222 PF13537 Glutamine amidotransferase domain CO731_04224 PF00106 short chain dehydrogenase CO731_04225 PF02080 TrkA-C domain CO731_04225 PF03600 Citrate transporter CO731_04229 PF01553 Acyltransferase CO731_04229 PF00501 AMP-binding enzyme CO731_04230 PF01066 CDP-alcohol phosphatidyltransferase CO731_04231 PF02666 Phosphatidylserine decarboxylase CO731_04234 PF00664 ABC transporter transmembrane region CO731_04234 PF00005 ABC transporter CO731_04236 PF01476 LysM domain CO731_04236 PF04972 BON domain CO731_04237 PF03641 Possible lysine decarboxylase CO731_04238 PF00892 EamA-like transporter family CO731_04239 PF08502 LeuA allosteric (dimerisation) domain CO731_04239 PF00682 HMGL-like CO731_04240 PF00561 alpha/beta hydrolase fold CO731_04245 PF04480 Protein of unknown function (DUF559) CO731_04246 PF01406 tRNA synthetases class I (C) catalytic domain CO731_04251 PF00293 NUDIX domain CO731_04251 PF09297 NADH pyrophosphatase zinc ribbon domain CO731_04255 PF01979 Amidohydrolase family CO731_04256 PF01571 Aminomethyltransferase folate-binding domain CO731_04257 PF01966 HD domain CO731_04258 PF13417 Glutathione S-transferase, N-terminal domain CO731_04259 PF06772 Bacterial low temperature requirement A protein (LtrA) CO731_04264 PF01022 Bacterial regulatory protein, arsR family CO731_04265 PF18030 RimK PreATP-grasp domain CO731_04265 PF08443 RimK-like ATP-grasp domain CO731_04266 PF00583 Acetyltransferase (GNAT) family CO731_04268 PF04542 Sigma-70 region 2 CO731_04268 PF08281 Sigma-70, region 4 CO731_04270 PF01850 PIN domain CO731_04275 PF02565 Recombination protein O C terminal CO731_04275 PF11967 Recombination protein O N terminal CO731_04279 PF07690 Major Facilitator Superfamily CO731_04281 PF00106 short chain dehydrogenase CO731_04283 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CO731_04283 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CO731_04287 PF00144 Beta-lactamase CO731_04288 PF01966 HD domain CO731_04290 PF01546 Peptidase family M20/M25/M40 CO731_04290 PF07687 Peptidase dimerisation domain CO731_04291 PF03466 LysR substrate binding domain CO731_04291 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_04294 PF13426 PAS domain CO731_04294 PF07536 HWE histidine kinase CO731_04296 PF00106 short chain dehydrogenase CO731_04298 PF01926 50S ribosome-binding GTPase CO731_04298 PF07650 KH domain CO731_04299 PF00035 Double-stranded RNA binding motif CO731_04299 PF14622 Ribonuclease-III-like CO731_04300 PF10502 Signal peptidase, peptidase S26 CO731_04301 PF01648 4'-phosphopantetheinyl transferase superfamily CO731_04302 PF00156 Phosphoribosyl transferase domain CO731_04303 PF04607 Region found in RelA / SpoT proteins CO731_04303 PF13291 ACT domain CO731_04303 PF02824 TGS domain CO731_04304 PF01192 RNA polymerase Rpb6 CO731_04307 PF01668 SmpB protein CO731_04308 PF00701 Dihydrodipicolinate synthetase family CO731_04309 PF14718 Soluble lytic murein transglycosylase L domain CO731_04309 PF01464 Transglycosylase SLT domain CO731_04310 PF12697 Alpha/beta hydrolase family CO731_04311 PF02530 Porin subfamily CO731_04317 PF08681 Protein of unknown function (DUF1778) CO731_04318 PF05284 Protein of unknown function (DUF736) CO731_04319 PF06067 Domain of unknown function (DUF932) CO731_04325 PF13614 AAA domain CO731_04328 PF10502 Signal peptidase, peptidase S26 CO731_04330 PF01464 Transglycosylase SLT domain CO731_04332 PF13411 MerR HTH family regulatory protein CO731_04333 PF00561 alpha/beta hydrolase fold CO731_04333 PF00364 Biotin-requiring enzyme CO731_04334 PF03466 LysR substrate binding domain CO731_04334 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_04335 PF02534 Type IV secretory system Conjugative DNA transfer CO731_04337 PF00437 Type II/IV secretion system protein CO731_04340 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO731_04343 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO731_04346 PF03743 Bacterial conjugation TrbI-like protein CO731_04348 PF03466 LysR substrate binding domain CO731_04348 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_04351 PF00873 AcrB/AcrD/AcrF family CO731_04360 PF08281 Sigma-70, region 4 CO731_04360 PF04542 Sigma-70 region 2 CO731_04364 PF02530 Porin subfamily CO731_04365 PF02899 Phage integrase, N-terminal SAM-like domain CO731_04365 PF00589 Phage integrase family CO731_04366 PF00155 Aminotransferase class I and II CO731_04368 PF00664 ABC transporter transmembrane region CO731_04368 PF00005 ABC transporter CO731_04369 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CO731_04369 PF00529 HlyD membrane-fusion protein of T1SS CO731_04371 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CO731_04371 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CO731_04371 PF02770 Acyl-CoA dehydrogenase, middle domain CO731_04375 PF01039 Carboxyl transferase domain CO731_04376 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CO731_04376 PF02785 Biotin carboxylase C-terminal domain CO731_04376 PF00289 Biotin carboxylase, N-terminal domain CO731_04376 PF00364 Biotin-requiring enzyme CO731_04378 PF10417 C-terminal domain of 1-Cys peroxiredoxin CO731_04378 PF00578 AhpC/TSA family CO731_04379 PF13458 Periplasmic binding protein CO731_04382 PF02798 Glutathione S-transferase, N-terminal domain CO731_04382 PF00043 Glutathione S-transferase, C-terminal domain CO731_04385 PF01048 Phosphorylase superfamily CO731_04385 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus CO731_04390 PF03167 Uracil DNA glycosylase superfamily CO731_04394 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CO731_04394 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CO731_04395 PF01433 Peptidase family M1 domain CO731_04395 PF11940 Domain of unknown function (DUF3458) Ig-like fold CO731_04395 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CO731_04396 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_04396 PF00989 PAS fold CO731_04396 PF00512 His Kinase A (phospho-acceptor) domain CO731_04398 PF03710 Glutamate-ammonia ligase adenylyltransferase CO731_04398 PF08335 GlnD PII-uridylyltransferase CO731_04399 PF00672 HAMP domain CO731_04399 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_04399 PF00512 His Kinase A (phospho-acceptor) domain CO731_04400 PF00486 Transcriptional regulatory protein, C terminal CO731_04400 PF00072 Response regulator receiver domain CO731_04401 PF13180 PDZ domain CO731_04402 PF03918 Cytochrome C biogenesis protein CO731_04403 PF01578 Cytochrome C assembly protein CO731_04403 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CO731_04404 PF03100 CcmE CO731_04407 PF00512 His Kinase A (phospho-acceptor) domain CO731_04407 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_04407 PF00672 HAMP domain CO731_04408 PF00486 Transcriptional regulatory protein, C terminal CO731_04408 PF00072 Response regulator receiver domain CO731_04413 PF00912 Transglycosylase CO731_04413 PF00905 Penicillin binding protein transpeptidase domain CO731_04420 PF00512 His Kinase A (phospho-acceptor) domain CO731_04420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_04422 PF02657 Fe-S metabolism associated domain CO731_04424 PF00308 Bacterial dnaA protein CO731_04424 PF08299 Bacterial dnaA protein helix-turn-helix CO731_04424 PF11638 DnaA N-terminal domain CO731_04426 PF05443 ROS/MUCR transcriptional regulator protein CO731_04428 PF00326 Prolyl oligopeptidase family CO731_04428 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CO731_04429 PF00034 Cytochrome c CO731_04431 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CO731_04431 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CO731_04432 PF01063 Amino-transferase class IV CO731_04433 PF13419 Haloacid dehalogenase-like hydrolase CO731_04434 PF03734 L,D-transpeptidase catalytic domain CO731_04434 PF17969 L,D-transpeptidase C-terminal domain CO731_04435 PF05872 Bacterial protein of unknown function (DUF853) CO731_04437 PF02661 Fic/DOC family CO731_04438 PF03449 Transcription elongation factor, N-terminal CO731_04438 PF01272 Transcription elongation factor, GreA/GreB, C-term CO731_04441 PF00108 Thiolase, N-terminal domain CO731_04441 PF02803 Thiolase, C-terminal domain CO731_04442 PF13977 BetI-type transcriptional repressor, C-terminal CO731_04442 PF00440 Bacterial regulatory proteins, tetR family CO731_04443 PF00884 Sulfatase CO731_04443 PF12411 Choline sulfatase enzyme C terminal CO731_04444 PF00291 Pyridoxal-phosphate dependent enzyme CO731_04445 PF05199 GMC oxidoreductase CO731_04445 PF00732 GMC oxidoreductase CO731_04446 PF00171 Aldehyde dehydrogenase family CO731_04447 PF01050 Mannose-6-phosphate isomerase CO731_04447 PF00483 Nucleotidyl transferase CO731_04448 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CO731_04448 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CO731_04448 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CO731_04448 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CO731_04471 PF00665 Integrase core domain CO731_04472 PF00128 Alpha amylase, catalytic domain CO731_04473 PF00128 Alpha amylase, catalytic domain CO731_04473 PF18390 Glycogen debranching enzyme C-terminal domain CO731_04473 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CO731_04474 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CO731_04474 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CO731_04474 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CO731_04474 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CO731_04475 PF00534 Glycosyl transferases group 1 CO731_04475 PF08323 Starch synthase catalytic domain CO731_04476 PF00483 Nucleotidyl transferase CO731_04477 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CO731_04477 PF02806 Alpha amylase, C-terminal all-beta domain CO731_04477 PF00128 Alpha amylase, catalytic domain CO731_04478 PF00343 Carbohydrate phosphorylase CO731_04479 PF00005 ABC transporter CO731_04480 PF02653 Branched-chain amino acid transport system / permease component CO731_04481 PF13407 Periplasmic binding protein domain CO731_04482 PF00480 ROK family CO731_04483 PF05025 RbsD / FucU transport protein family CO731_04484 PF00294 pfkB family carbohydrate kinase CO731_04485 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CO731_04486 PF00459 Inositol monophosphatase family CO731_04487 PF00009 Elongation factor Tu GTP binding domain CO731_04488 PF01507 Phosphoadenosine phosphosulfate reductase family CO731_04490 PF01370 NAD dependent epimerase/dehydratase family CO731_04494 PF13193 AMP-binding enzyme C-terminal domain CO731_04494 PF00501 AMP-binding enzyme CO731_04496 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CO731_04496 PF00391 PEP-utilising enzyme, mobile domain CO731_04496 PF02896 PEP-utilising enzyme, TIM barrel domain CO731_04502 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CO731_04502 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CO731_04505 PF07886 BA14K-like protein CO731_04507 PF04955 HupE / UreJ protein CO731_04508 PF01774 UreD urease accessory protein CO731_04509 PF02492 CobW/HypB/UreG, nucleotide-binding domain CO731_04510 PF00449 Urease alpha-subunit, N-terminal domain CO731_04510 PF01979 Amidohydrolase family CO731_04511 PF00547 Urease, gamma subunit CO731_04511 PF00699 Urease beta subunit CO731_04512 PF01730 UreF CO731_04514 PF00005 ABC transporter CO731_04515 PF12399 Branched-chain amino acid ATP-binding cassette transporter CO731_04515 PF00005 ABC transporter CO731_04521 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_04521 PF01571 Aminomethyltransferase folate-binding domain CO731_04522 PF04955 HupE / UreJ protein CO731_04524 PF00491 Arginase family CO731_04525 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CO731_04526 PF02492 CobW/HypB/UreG, nucleotide-binding domain CO731_04532 PF00873 AcrB/AcrD/AcrF family CO731_04533 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CO731_04535 PF02463 RecF/RecN/SMC N terminal domain CO731_04536 PF13462 Thioredoxin CO731_04538 PF14815 NUDIX domain CO731_04538 PF00730 HhH-GPD superfamily base excision DNA repair protein CO731_04539 PF13419 Haloacid dehalogenase-like hydrolase CO731_04540 PF01555 DNA methylase CO731_04540 PF18755 Restriction Enzyme Adenine Methylase Associated CO731_04541 PF13419 Haloacid dehalogenase-like hydrolase CO731_04543 PF00291 Pyridoxal-phosphate dependent enzyme CO731_04543 PF14821 Threonine synthase N terminus CO731_04544 PF05193 Peptidase M16 inactive domain CO731_04544 PF00675 Insulinase (Peptidase family M16) CO731_04545 PF13302 Acetyltransferase (GNAT) domain CO731_04546 PF03707 Bacterial signalling protein N terminal repeat CO731_04546 PF00563 EAL domain CO731_04546 PF00990 Diguanylate cyclase, GGDEF domain CO731_04547 PF02622 Uncharacterized ACR, COG1678 CO731_04549 PF08534 Redoxin CO731_04550 PF00075 RNase H CO731_04551 PF01636 Phosphotransferase enzyme family CO731_04552 PF02401 LytB protein CO731_04553 PF02104 SURF1 family CO731_04556 PF00510 Cytochrome c oxidase subunit III CO731_04557 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 CO731_04559 PF01040 UbiA prenyltransferase family CO731_04560 PF00115 Cytochrome C and Quinol oxidase polypeptide I CO731_04561 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CO731_04561 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CO731_04564 PF00082 Subtilase family CO731_04565 PF01523 Putative modulator of DNA gyrase CO731_04566 PF05958 tRNA (Uracil-5-)-methyltransferase CO731_04567 PF01479 S4 domain CO731_04567 PF01728 FtsJ-like methyltransferase CO731_04568 PF02779 Transketolase, pyrimidine binding domain CO731_04568 PF02780 Transketolase, C-terminal domain CO731_04568 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CO731_04569 PF05726 Pirin C-terminal cupin domain CO731_04569 PF02678 Pirin CO731_04571 PF02609 Exonuclease VII small subunit CO731_04572 PF00850 Histone deacetylase domain CO731_04573 PF00440 Bacterial regulatory proteins, tetR family CO731_04578 PF01264 Chorismate synthase CO731_04580 PF00300 Histidine phosphatase superfamily (branch 1) CO731_04582 PF01556 DnaJ C terminal domain CO731_04582 PF00684 DnaJ central domain CO731_04582 PF00226 DnaJ domain CO731_04584 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CO731_04584 PF01243 Pyridoxamine 5'-phosphate oxidase CO731_04585 PF00378 Enoyl-CoA hydratase/isomerase CO731_04586 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CO731_04586 PF12806 Acetyl-CoA dehydrogenase C-terminal like CO731_04586 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CO731_04586 PF02770 Acyl-CoA dehydrogenase, middle domain CO731_04589 PF02844 Phosphoribosylglycinamide synthetase, N domain CO731_04589 PF02843 Phosphoribosylglycinamide synthetase, C domain CO731_04589 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CO731_04590 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CO731_04592 PF01040 UbiA prenyltransferase family CO731_04594 PF01565 FAD binding domain CO731_04594 PF02913 FAD linked oxidases, C-terminal domain CO731_04595 PF03481 Putative GTP-binding controlling metal-binding CO731_04595 PF01300 Telomere recombination CO731_04598 PF05746 DALR anticodon binding domain CO731_04598 PF02092 Glycyl-tRNA synthetase beta subunit CO731_04600 PF02091 Glycyl-tRNA synthetase alpha subunit CO731_04602 PF00348 Polyprenyl synthetase CO731_04605 PF01343 Peptidase family S49 CO731_04605 PF06965 Na+/H+ antiporter 1 CO731_04607 PF00288 GHMP kinases N terminal domain CO731_04607 PF08544 GHMP kinases C terminal CO731_04608 PF00994 Probable molybdopterin binding domain CO731_04611 PF04055 Radical SAM superfamily CO731_04612 PF01351 Ribonuclease HII CO731_04613 PF00430 ATP synthase B/B' CF(0) CO731_04614 PF00430 ATP synthase B/B' CF(0) CO731_04615 PF00137 ATP synthase subunit C CO731_04616 PF00119 ATP synthase A chain CO731_04617 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter CO731_04619 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CO731_04619 PF01926 50S ribosome-binding GTPase CO731_04622 PF05992 SbmA/BacA-like family CO731_04623 PF01124 MAPEG family CO731_04625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_04625 PF03466 LysR substrate binding domain CO731_04626 PF03960 ArsC family CO731_04627 PF01047 MarR family CO731_04629 PF13533 Biotin-lipoyl like CO731_04632 PF01022 Bacterial regulatory protein, arsR family CO731_04633 PF01979 Amidohydrolase family CO731_04634 PF01979 Amidohydrolase family CO731_04635 PF01613 Flavin reductase like domain CO731_04636 PF00005 ABC transporter CO731_04636 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_04637 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_04637 PF00005 ABC transporter CO731_04638 PF00528 Binding-protein-dependent transport system inner membrane component CO731_04638 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_04640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_04642 PF01979 Amidohydrolase family CO731_04643 PF03576 Peptidase family S58 CO731_04644 PF00293 NUDIX domain CO731_04645 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_04646 PF00202 Aminotransferase class-III CO731_04649 PF00982 Glycosyltransferase family 20 CO731_04651 PF13439 Glycosyltransferase Family 4 CO731_04654 PF01850 PIN domain CO731_04655 PF14480 DNA polymerase III polC-type N-terminus I CO731_04655 PF11490 DNA polymerase III polC-type N-terminus II CO731_04655 PF14579 Helix-hairpin-helix motif CO731_04655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CO731_04655 PF02811 PHP domain CO731_04655 PF00929 Exonuclease CO731_04655 PF07733 Bacterial DNA polymerase III alpha NTPase domain CO731_04656 PF02463 RecF/RecN/SMC N terminal domain CO731_04657 PF00580 UvrD/REP helicase N-terminal domain CO731_04657 PF13361 UvrD-like helicase C-terminal domain CO731_04663 PF00271 Helicase conserved C-terminal domain CO731_04663 PF00176 SNF2 family N-terminal domain CO731_04664 PF00270 DEAD/DEAH box helicase CO731_04664 PF09369 Domain of unknown function (DUF1998) CO731_04664 PF00271 Helicase conserved C-terminal domain CO731_04668 PF02195 ParB-like nuclease domain CO731_04675 PF05284 Protein of unknown function (DUF736) CO731_04681 PF13614 AAA domain CO731_04688 PF02534 Type IV secretory system Conjugative DNA transfer CO731_04690 PF00437 Type II/IV secretion system protein CO731_04691 PF04956 TrbC/VIRB2 family CO731_04693 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO731_04696 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO731_04699 PF03743 Bacterial conjugation TrbI-like protein CO731_04711 PF02673 Bacitracin resistance protein BacA CO731_04712 PF05190 MutS family domain IV CO731_04712 PF00488 MutS domain V CO731_04712 PF01624 MutS domain I CO731_04712 PF05188 MutS domain II CO731_04712 PF05192 MutS domain III CO731_04713 PF05188 MutS domain II CO731_04713 PF05192 MutS domain III CO731_04713 PF05190 MutS family domain IV CO731_04713 PF01624 MutS domain I CO731_04713 PF00488 MutS domain V CO731_04718 PF00113 Enolase, C-terminal TIM barrel domain CO731_04718 PF03952 Enolase, N-terminal domain CO731_04719 PF00300 Histidine phosphatase superfamily (branch 1) CO731_04721 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CO731_04723 PF00654 Voltage gated chloride channel CO731_04725 PF00958 GMP synthase C terminal domain CO731_04725 PF00117 Glutamine amidotransferase class-I CO731_04725 PF02540 NAD synthase CO731_04731 PF03073 TspO/MBR family CO731_04732 PF01029 NusB family CO731_04732 PF01189 16S rRNA methyltransferase RsmB/F CO731_04733 PF00141 Peroxidase CO731_04734 PF06628 Catalase-related immune-responsive CO731_04734 PF00199 Catalase CO731_04735 PF03466 LysR substrate binding domain CO731_04735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_04736 PF01634 ATP phosphoribosyltransferase CO731_04737 PF13393 Histidyl-tRNA synthetase CO731_04738 PF13393 Histidyl-tRNA synthetase CO731_04738 PF03129 Anticodon binding domain CO731_04741 PF03352 Methyladenine glycosylase CO731_04742 PF17969 L,D-transpeptidase C-terminal domain CO731_04742 PF03734 L,D-transpeptidase catalytic domain CO731_04744 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CO731_04744 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CO731_04745 PF17969 L,D-transpeptidase C-terminal domain CO731_04745 PF03734 L,D-transpeptidase catalytic domain CO731_04746 PF13183 4Fe-4S dicluster domain CO731_04746 PF02754 Cysteine-rich domain CO731_04748 PF02913 FAD linked oxidases, C-terminal domain CO731_04748 PF01565 FAD binding domain CO731_04750 PF02913 FAD linked oxidases, C-terminal domain CO731_04750 PF01565 FAD binding domain CO731_04752 PF00392 Bacterial regulatory proteins, gntR family CO731_04752 PF07729 FCD domain CO731_04755 PF00117 Glutamine amidotransferase class-I CO731_04758 PF04452 RNA methyltransferase CO731_04760 PF16859 Tetracyclin repressor-like, C-terminal domain CO731_04760 PF00440 Bacterial regulatory proteins, tetR family CO731_04761 PF04107 Glutamate-cysteine ligase family 2(GCS2) CO731_04764 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_04764 PF03466 LysR substrate binding domain CO731_04765 PF02601 Exonuclease VII, large subunit CO731_04765 PF13742 OB-fold nucleic acid binding domain CO731_04767 PF13193 AMP-binding enzyme C-terminal domain CO731_04767 PF00501 AMP-binding enzyme CO731_04768 PF00528 Binding-protein-dependent transport system inner membrane component CO731_04769 PF13416 Bacterial extracellular solute-binding protein CO731_04770 PF13188 PAS domain CO731_04770 PF00989 PAS fold CO731_04770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_04770 PF00512 His Kinase A (phospho-acceptor) domain CO731_04771 PF09361 Phasin protein CO731_04779 PF00012 Hsp70 protein CO731_04782 PF12705 PD-(D/E)XK nuclease superfamily CO731_04782 PF13361 UvrD-like helicase C-terminal domain CO731_04782 PF00580 UvrD/REP helicase N-terminal domain CO731_04785 PF00665 Integrase core domain CO731_04789 PF07690 Major Facilitator Superfamily CO731_04790 PF06114 IrrE N-terminal-like domain CO731_04790 PF09856 Predicted transcriptional regulator (DUF2083) CO731_04790 PF01381 Helix-turn-helix CO731_04791 PF00463 Isocitrate lyase family CO731_04795 PF00120 Glutamine synthetase, catalytic domain CO731_04797 PF01266 FAD dependent oxidoreductase CO731_04798 PF08281 Sigma-70, region 4 CO731_04798 PF04542 Sigma-70 region 2 CO731_04799 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CO731_04799 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CO731_04801 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CO731_04801 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CO731_04802 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CO731_04803 PF00920 Dehydratase family CO731_04807 PF00005 ABC transporter CO731_04807 PF12848 ABC transporter CO731_04809 PF12833 Helix-turn-helix domain CO731_04809 PF01965 DJ-1/PfpI family CO731_04810 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CO731_04810 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CO731_04814 PF03808 Glycosyl transferase WecB/TagA/CpsF family CO731_04819 PF03807 NADP oxidoreductase coenzyme F420-dependent CO731_04819 PF14748 Pyrroline-5-carboxylate reductase dimerisation CO731_04820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_04820 PF03459 TOBE domain CO731_04821 PF00005 ABC transporter CO731_04821 PF03459 TOBE domain CO731_04822 PF00528 Binding-protein-dependent transport system inner membrane component CO731_04824 PF01925 Sulfite exporter TauE/SafE CO731_04825 PF00108 Thiolase, N-terminal domain CO731_04825 PF02803 Thiolase, C-terminal domain CO731_04826 PF01144 Coenzyme A transferase CO731_04827 PF01144 Coenzyme A transferase CO731_04828 PF01614 Bacterial transcriptional regulator CO731_04828 PF09339 IclR helix-turn-helix domain CO731_04830 PF13091 PLD-like domain CO731_04870 PF04466 Phage terminase large subunit CO731_04870 PF17288 Terminase RNAseH like domain CO731_04876 PF00308 Bacterial dnaA protein CO731_04876 PF11638 DnaA N-terminal domain CO731_04876 PF08299 Bacterial dnaA protein helix-turn-helix CO731_04879 PF01555 DNA methylase CO731_04887 PF00665 Integrase core domain CO731_04913 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CO731_04916 PF06793 Uncharacterised protein family (UPF0262) CO731_04918 PF01176 Translation initiation factor 1A / IF-1 CO731_04919 PF02545 Maf-like protein CO731_04920 PF03884 DNA gyrase inhibitor YacG CO731_04923 PF02530 Porin subfamily CO731_04924 PF00589 Phage integrase family CO731_04924 PF02899 Phage integrase, N-terminal SAM-like domain CO731_04927 PF13505 Outer membrane protein beta-barrel domain CO731_04929 PF17158 Membrane-associated sensor, integral membrane domain CO731_04929 PF00990 Diguanylate cyclase, GGDEF domain CO731_04960 PF03354 Phage Terminase CO731_04970 PF00075 RNase H CO731_04984 PF14659 Phage integrase, N-terminal SAM-like domain CO731_04984 PF00589 Phage integrase family CO731_04985 PF00990 Diguanylate cyclase, GGDEF domain CO731_04985 PF13188 PAS domain CO731_04985 PF03707 Bacterial signalling protein N terminal repeat CO731_04985 PF00563 EAL domain CO731_04987 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_04987 PF01571 Aminomethyltransferase folate-binding domain CO731_04988 PF07729 FCD domain CO731_04988 PF00392 Bacterial regulatory proteins, gntR family CO731_04991 PF00072 Response regulator receiver domain CO731_04991 PF00196 Bacterial regulatory proteins, luxR family CO731_04994 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CO731_04994 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CO731_04995 PF01268 Formate--tetrahydrofolate ligase CO731_04996 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_04996 PF01571 Aminomethyltransferase folate-binding domain CO731_04998 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_04998 PF00970 Oxidoreductase FAD-binding domain CO731_04998 PF00175 Oxidoreductase NAD-binding domain CO731_05001 PF00294 pfkB family carbohydrate kinase CO731_05003 PF01042 Endoribonuclease L-PSP CO731_05004 PF00005 ABC transporter CO731_05005 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05006 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05007 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_05008 PF14031 Putative serine dehydratase domain CO731_05008 PF01168 Alanine racemase, N-terminal domain CO731_05012 PF00005 ABC transporter CO731_05013 PF03459 TOBE domain CO731_05014 PF01980 tRNA-methyltransferase O CO731_05017 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05018 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05019 PF01168 Alanine racemase, N-terminal domain CO731_05020 PF01266 FAD dependent oxidoreductase CO731_05021 PF01370 NAD dependent epimerase/dehydratase family CO731_05022 PF00155 Aminotransferase class I and II CO731_05023 PF00155 Aminotransferase class I and II CO731_05024 PF01741 Large-conductance mechanosensitive channel, MscL CO731_05025 PF00512 His Kinase A (phospho-acceptor) domain CO731_05025 PF09456 RcsC Alpha-Beta-Loop (ABL) CO731_05025 PF00072 Response regulator receiver domain CO731_05025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_05026 PF00072 Response regulator receiver domain CO731_05026 PF00196 Bacterial regulatory proteins, luxR family CO731_05029 PF01180 Dihydroorotate dehydrogenase CO731_05031 PF00850 Histone deacetylase domain CO731_05034 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_05035 PF00692 dUTPase CO731_05036 PF01053 Cys/Met metabolism PLP-dependent enzyme CO731_05037 PF04379 ApaG domain CO731_05038 PF01430 Hsp33 protein CO731_05039 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CO731_05039 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CO731_05040 PF00202 Aminotransferase class-III CO731_05042 PF01544 CorA-like Mg2+ transporter protein CO731_05043 PF01895 PhoU domain CO731_05044 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_05044 PF00512 His Kinase A (phospho-acceptor) domain CO731_05044 PF00989 PAS fold CO731_05044 PF16736 Single Cache-like CO731_05045 PF03976 Polyphosphate kinase 2 (PPK2) CO731_05055 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_05057 PF01921 tRNA synthetases class I (K) CO731_05059 PF00717 Peptidase S24-like CO731_05059 PF01726 LexA DNA binding domain CO731_05061 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CO731_05061 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CO731_05061 PF00378 Enoyl-CoA hydratase/isomerase CO731_05062 PF02803 Thiolase, C-terminal domain CO731_05062 PF00108 Thiolase, N-terminal domain CO731_05063 PF02770 Acyl-CoA dehydrogenase, middle domain CO731_05063 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CO731_05063 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CO731_05065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CO731_05065 PF12806 Acetyl-CoA dehydrogenase C-terminal like CO731_05065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CO731_05065 PF02770 Acyl-CoA dehydrogenase, middle domain CO731_05066 PF13411 MerR HTH family regulatory protein CO731_05067 PF08238 Sel1 repeat CO731_05067 PF01471 Putative peptidoglycan binding domain CO731_05068 PF01925 Sulfite exporter TauE/SafE CO731_05071 PF00270 DEAD/DEAH box helicase CO731_05071 PF08494 DEAD/H associated CO731_05071 PF00271 Helicase conserved C-terminal domain CO731_05075 PF01068 ATP dependent DNA ligase domain CO731_05075 PF04679 ATP dependent DNA ligase C terminal region CO731_05075 PF04675 DNA ligase N terminus CO731_05125 PF02899 Phage integrase, N-terminal SAM-like domain CO731_05125 PF00589 Phage integrase family CO731_05126 PF00892 EamA-like transporter family CO731_05131 PF07411 Domain of unknown function (DUF1508) CO731_05133 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_05133 PF00005 ABC transporter CO731_05134 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_05134 PF00005 ABC transporter CO731_05135 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05136 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05137 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_05138 PF00005 ABC transporter CO731_05138 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_05139 PF00005 ABC transporter CO731_05139 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_05140 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05140 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_05141 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05142 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_05143 PF13193 AMP-binding enzyme C-terminal domain CO731_05143 PF00501 AMP-binding enzyme CO731_05145 PF00920 Dehydratase family CO731_05154 PF00392 Bacterial regulatory proteins, gntR family CO731_05154 PF00155 Aminotransferase class I and II CO731_05155 PF00342 Phosphoglucose isomerase CO731_05157 PF03466 LysR substrate binding domain CO731_05157 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_05158 PF07690 Major Facilitator Superfamily CO731_05159 PF10609 NUBPL iron-transfer P-loop NTPase CO731_05159 PF01883 Iron-sulfur cluster assembly protein CO731_05164 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_05164 PF03466 LysR substrate binding domain CO731_05166 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CO731_05166 PF00037 4Fe-4S binding domain CO731_05166 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CO731_05167 PF01568 Molydopterin dinucleotide binding domain CO731_05167 PF00037 4Fe-4S binding domain CO731_05167 PF00384 Molybdopterin oxidoreductase CO731_05167 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CO731_05167 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CO731_05168 PF02634 FdhD/NarQ family CO731_05170 PF00561 alpha/beta hydrolase fold CO731_05171 PF02627 Carboxymuconolactone decarboxylase family CO731_05176 PF08220 DeoR-like helix-turn-helix domain CO731_05176 PF00455 DeoR C terminal sensor domain CO731_05178 PF01571 Aminomethyltransferase folate-binding domain CO731_05178 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_05178 PF01266 FAD dependent oxidoreductase CO731_05178 PF16350 FAD dependent oxidoreductase central domain CO731_05179 PF00188 Cysteine-rich secretory protein family CO731_05180 PF00892 EamA-like transporter family CO731_05182 PF07969 Amidohydrolase family CO731_05184 PF02653 Branched-chain amino acid transport system / permease component CO731_05187 PF00005 ABC transporter CO731_05187 PF00664 ABC transporter transmembrane region CO731_05188 PF00171 Aldehyde dehydrogenase family CO731_05189 PF00484 Carbonic anhydrase CO731_05192 PF03788 LrgA family CO731_05193 PF04172 LrgB-like family CO731_05197 PF01638 HxlR-like helix-turn-helix CO731_05200 PF13426 PAS domain CO731_05200 PF08448 PAS fold CO731_05200 PF00072 Response regulator receiver domain CO731_05200 PF00512 His Kinase A (phospho-acceptor) domain CO731_05200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CO731_05201 PF00825 Ribonuclease P CO731_05202 PF02096 60Kd inner membrane protein CO731_05202 PF14849 YidC periplasmic domain CO731_05203 PF00132 Bacterial transferase hexapeptide (six repeats) CO731_05204 PF01926 50S ribosome-binding GTPase CO731_05205 PF01641 SelR domain CO731_05206 PF02469 Fasciclin domain CO731_05209 PF00696 Amino acid kinase family CO731_05211 PF01037 Lrp/AsnC ligand binding domain CO731_05212 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CO731_05214 PF17158 Membrane-associated sensor, integral membrane domain CO731_05214 PF00990 Diguanylate cyclase, GGDEF domain CO731_05216 PF05675 Protein of unknown function (DUF817) CO731_05218 PF14602 Hexapeptide repeat of succinyl-transferase CO731_05218 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CO731_05219 PF05656 Protein of unknown function (DUF805) CO731_05220 PF07687 Peptidase dimerisation domain CO731_05220 PF01546 Peptidase family M20/M25/M40 CO731_05222 PF01416 tRNA pseudouridine synthase CO731_05224 PF02911 Formyl transferase, C-terminal domain CO731_05224 PF00551 Formyl transferase CO731_05225 PF01327 Polypeptide deformylase CO731_05229 PF00893 Small Multidrug Resistance protein CO731_05231 PF00296 Luciferase-like monooxygenase CO731_05232 PF00296 Luciferase-like monooxygenase CO731_05234 PF13662 Toprim domain CO731_05234 PF02132 RecR protein CO731_05235 PF07486 Cell Wall Hydrolase CO731_05235 PF01471 Putative peptidoglycan binding domain CO731_05236 PF08240 Alcohol dehydrogenase GroES-like domain CO731_05236 PF00107 Zinc-binding dehydrogenase CO731_05237 PF02575 YbaB/EbfC DNA-binding family CO731_05238 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CO731_05238 PF12169 DNA polymerase III subunits gamma and tau domain III CO731_05238 PF12170 DNA polymerase III tau subunit V interacting with alpha CO731_05240 PF09297 NADH pyrophosphatase zinc ribbon domain CO731_05240 PF00293 NUDIX domain CO731_05240 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CO731_05241 PF01047 MarR family CO731_05241 PF00583 Acetyltransferase (GNAT) family CO731_05243 PF01817 Chorismate mutase type II CO731_05243 PF00800 Prephenate dehydratase CO731_05244 PF02348 Cytidylyltransferase CO731_05245 PF00034 Cytochrome c CO731_05246 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_05247 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_05248 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05249 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05249 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_05251 PF01850 PIN domain CO731_05252 PF00005 ABC transporter CO731_05252 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_05253 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CO731_05254 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain CO731_05254 PF00877 NlpC/P60 family CO731_05256 PF00883 Cytosol aminopeptidase family, catalytic domain CO731_05256 PF02789 Cytosol aminopeptidase family, N-terminal domain CO731_05260 PF00437 Type II/IV secretion system protein CO731_05263 PF00263 Bacterial type II and III secretion system protein CO731_05263 PF13629 Pilus formation protein N terminal region CO731_05263 PF04972 BON domain CO731_05270 PF01676 Metalloenzyme superfamily CO731_05271 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CO731_05271 PF06827 Zinc finger found in FPG and IleRS CO731_05271 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CO731_05272 PF00378 Enoyl-CoA hydratase/isomerase CO731_05273 PF01649 Ribosomal protein S20 CO731_05275 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05276 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05277 PF00005 ABC transporter CO731_05277 PF08402 TOBE domain CO731_05280 PF00501 AMP-binding enzyme CO731_05280 PF13193 AMP-binding enzyme C-terminal domain CO731_05281 PF00378 Enoyl-CoA hydratase/isomerase CO731_05282 PF08240 Alcohol dehydrogenase GroES-like domain CO731_05282 PF00107 Zinc-binding dehydrogenase CO731_05283 PF07729 FCD domain CO731_05283 PF00392 Bacterial regulatory proteins, gntR family CO731_05284 PF02913 FAD linked oxidases, C-terminal domain CO731_05284 PF01565 FAD binding domain CO731_05287 PF13614 AAA domain CO731_05288 PF02195 ParB-like nuclease domain CO731_05288 PF07506 RepB plasmid partitioning protein CO731_05289 PF03428 Replication protein C N-terminal domain CO731_05289 PF11800 Replication protein C C-terminal region CO731_05293 PF11972 HTH DNA binding domain CO731_05293 PF07756 Protein of unknown function (DUF1612) CO731_05294 PF00155 Aminotransferase class I and II CO731_05296 PF03466 LysR substrate binding domain CO731_05296 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_05297 PF00497 Bacterial extracellular solute-binding proteins, family 3 CO731_05298 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05299 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05300 PF00005 ABC transporter CO731_05301 PF00491 Arginase family CO731_05302 PF10415 Fumarase C C-terminus CO731_05302 PF00206 Lyase CO731_05303 PF00005 ABC transporter CO731_05304 PF17763 Glutaminase/Asparaginase C-terminal domain CO731_05304 PF00710 Asparaginase, N-terminal CO731_05305 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CO731_05307 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05308 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05309 PF08402 TOBE domain CO731_05309 PF00005 ABC transporter CO731_05311 PF06574 FAD synthetase CO731_05311 PF01687 Riboflavin kinase CO731_05313 PF13417 Glutathione S-transferase, N-terminal domain CO731_05313 PF00043 Glutathione S-transferase, C-terminal domain CO731_05314 PF01220 Dehydroquinase class II CO731_05315 PF01613 Flavin reductase like domain CO731_05316 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CO731_05316 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CO731_05319 PF03466 LysR substrate binding domain CO731_05319 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_05320 PF07687 Peptidase dimerisation domain CO731_05320 PF01546 Peptidase family M20/M25/M40 CO731_05321 PF10415 Fumarase C C-terminus CO731_05321 PF00206 Lyase CO731_05322 PF00107 Zinc-binding dehydrogenase CO731_05322 PF08240 Alcohol dehydrogenase GroES-like domain CO731_05324 PF07756 Protein of unknown function (DUF1612) CO731_05324 PF11972 HTH DNA binding domain CO731_05325 PF01327 Polypeptide deformylase CO731_05328 PF09084 NMT1/THI5 like CO731_05329 PF00005 ABC transporter CO731_05330 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05331 PF03358 NADPH-dependent FMN reductase CO731_05332 PF00171 Aldehyde dehydrogenase family CO731_05335 PF01613 Flavin reductase like domain CO731_05337 PF17841 BID domain of Bartonella effector protein (Bep) CO731_05337 PF03389 MobA/MobL family CO731_05337 PF01443 Viral (Superfamily 1) RNA helicase CO731_05341 PF11398 Protein of unknown function (DUF2813) CO731_05342 PF00589 Phage integrase family CO731_05342 PF02899 Phage integrase, N-terminal SAM-like domain CO731_05343 PF00012 Hsp70 protein CO731_05346 PF00665 Integrase core domain CO731_05349 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05350 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05351 PF00005 ABC transporter CO731_05351 PF08402 TOBE domain CO731_05352 PF13454 FAD-NAD(P)-binding CO731_05355 PF01381 Helix-turn-helix CO731_05357 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CO731_05357 PF13378 Enolase C-terminal domain-like CO731_05358 PF07729 FCD domain CO731_05358 PF00392 Bacterial regulatory proteins, gntR family CO731_05359 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CO731_05360 PF00005 ABC transporter CO731_05361 PF02653 Branched-chain amino acid transport system / permease component CO731_05362 PF01263 Aldose 1-epimerase CO731_05366 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CO731_05367 PF02321 Outer membrane efflux protein CO731_05368 PF00698 Acyl transferase domain CO731_05368 PF00109 Beta-ketoacyl synthase, N-terminal domain CO731_05368 PF02801 Beta-ketoacyl synthase, C-terminal domain CO731_05368 PF16197 Ketoacyl-synthetase C-terminal extension CO731_05368 PF00668 Condensation domain CO731_05368 PF00550 Phosphopantetheine attachment site CO731_05369 PF00550 Phosphopantetheine attachment site CO731_05369 PF00668 Condensation domain CO731_05369 PF13193 AMP-binding enzyme C-terminal domain CO731_05369 PF00501 AMP-binding enzyme CO731_05369 PF07993 Male sterility protein CO731_05370 PF01648 4'-phosphopantetheinyl transferase superfamily CO731_05370 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CO731_05375 PF02563 Polysaccharide biosynthesis/export protein CO731_05376 PF02706 Chain length determinant protein CO731_05376 PF13807 G-rich domain on putative tyrosine kinase CO731_05376 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CO731_05379 PF00534 Glycosyl transferases group 1 CO731_05379 PF13439 Glycosyltransferase Family 4 CO731_05381 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_05382 PF01037 Lrp/AsnC ligand binding domain CO731_05384 PF00753 Metallo-beta-lactamase superfamily CO731_05384 PF04273 Putative phosphatase (DUF442) CO731_05385 PF00005 ABC transporter CO731_05386 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05387 PF09084 NMT1/THI5 like CO731_05392 PF01227 GTP cyclohydrolase I CO731_05393 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_05393 PF14759 Reductase C-terminal CO731_05395 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CO731_05395 PF13378 Enolase C-terminal domain-like CO731_05396 PF00557 Metallopeptidase family M24 CO731_05396 PF01321 Creatinase/Prolidase N-terminal domain CO731_05397 PF01979 Amidohydrolase family CO731_05398 PF01266 FAD dependent oxidoreductase CO731_05399 PF01274 Malate synthase CO731_05400 PF03928 Haem-degrading CO731_05401 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain CO731_05401 PF02558 Ketopantoate reductase PanE/ApbA CO731_05402 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CO731_05402 PF01488 Shikimate / quinate 5-dehydrogenase CO731_05402 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CO731_05403 PF01979 Amidohydrolase family CO731_05405 PF01361 Tautomerase enzyme CO731_05406 PF00857 Isochorismatase family CO731_05408 PF01425 Amidase CO731_05409 PF07969 Amidohydrolase family CO731_05412 PF02492 CobW/HypB/UreG, nucleotide-binding domain CO731_05412 PF07683 Cobalamin synthesis protein cobW C-terminal domain CO731_05414 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05415 PF00005 ABC transporter CO731_05416 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CO731_05416 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CO731_05417 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CO731_05418 PF02233 NAD(P) transhydrogenase beta subunit CO731_05419 PF00155 Aminotransferase class I and II CO731_05420 PF00440 Bacterial regulatory proteins, tetR family CO731_05421 PF01156 Inosine-uridine preferring nucleoside hydrolase CO731_05422 PF01266 FAD dependent oxidoreductase CO731_05424 PF00266 Aminotransferase class-V CO731_05425 PF03328 HpcH/HpaI aldolase/citrate lyase family CO731_05426 PF08442 ATP-grasp domain CO731_05426 PF00549 CoA-ligase CO731_05427 PF00549 CoA-ligase CO731_05427 PF02629 CoA binding domain CO731_05428 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CO731_05428 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CO731_05429 PF05161 MOFRL family CO731_05429 PF13660 Domain of unknown function (DUF4147) CO731_05432 PF01493 GXGXG motif CO731_05433 PF01645 Conserved region in glutamate synthase CO731_05434 PF00120 Glutamine synthetase, catalytic domain CO731_05435 PF01266 FAD dependent oxidoreductase CO731_05437 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_05437 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_05437 PF17806 Sarcosine oxidase A3 domain CO731_05437 PF01571 Aminomethyltransferase folate-binding domain CO731_05440 PF00311 Phosphoenolpyruvate carboxylase CO731_05441 PF00464 Serine hydroxymethyltransferase CO731_05442 PF00196 Bacterial regulatory proteins, luxR family CO731_05442 PF00072 Response regulator receiver domain CO731_05444 PF08281 Sigma-70, region 4 CO731_05444 PF04542 Sigma-70 region 2 CO731_05445 PF00082 Subtilase family CO731_05452 PF13520 Amino acid permease CO731_05456 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CO731_05457 PF01037 Lrp/AsnC ligand binding domain CO731_05458 PF13936 Helix-turn-helix domain CO731_05458 PF00665 Integrase core domain CO731_05460 PF04209 homogentisate 1,2-dioxygenase CO731_05462 PF02798 Glutathione S-transferase, N-terminal domain CO731_05462 PF14497 Glutathione S-transferase, C-terminal domain CO731_05463 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05464 PF00005 ABC transporter CO731_05467 PF00171 Aldehyde dehydrogenase family CO731_05468 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase CO731_05469 PF00266 Aminotransferase class-V CO731_05470 PF02690 Na+/Pi-cotransporter CO731_05471 PF03466 LysR substrate binding domain CO731_05471 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_05473 PF03795 YCII-related domain CO731_05474 PF12848 ABC transporter CO731_05474 PF00005 ABC transporter CO731_05476 PF02798 Glutathione S-transferase, N-terminal domain CO731_05476 PF00043 Glutathione S-transferase, C-terminal domain CO731_05477 PF00893 Small Multidrug Resistance protein CO731_05478 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_05478 PF01571 Aminomethyltransferase folate-binding domain CO731_05478 PF16350 FAD dependent oxidoreductase central domain CO731_05478 PF01266 FAD dependent oxidoreductase CO731_05480 PF08220 DeoR-like helix-turn-helix domain CO731_05480 PF00455 DeoR C terminal sensor domain CO731_05481 PF08669 Glycine cleavage T-protein C-terminal barrel domain CO731_05481 PF01571 Aminomethyltransferase folate-binding domain CO731_05481 PF16350 FAD dependent oxidoreductase central domain CO731_05481 PF01266 FAD dependent oxidoreductase CO731_05482 PF00970 Oxidoreductase FAD-binding domain CO731_05482 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_05482 PF00175 Oxidoreductase NAD-binding domain CO731_05483 PF00355 Rieske [2Fe-2S] domain CO731_05483 PF00848 Ring hydroxylating alpha subunit (catalytic domain) CO731_05484 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_05484 PF03466 LysR substrate binding domain CO731_05486 PF00596 Class II Aldolase and Adducin N-terminal domain CO731_05487 PF08220 DeoR-like helix-turn-helix domain CO731_05487 PF00455 DeoR C terminal sensor domain CO731_05489 PF00005 ABC transporter CO731_05490 PF02653 Branched-chain amino acid transport system / permease component CO731_05491 PF02653 Branched-chain amino acid transport system / permease component CO731_05494 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CO731_05496 PF01261 Xylose isomerase-like TIM barrel CO731_05497 PF05336 L-rhamnose mutarotase CO731_05498 PF00596 Class II Aldolase and Adducin N-terminal domain CO731_05499 PF00005 ABC transporter CO731_05499 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_05500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CO731_05500 PF00005 ABC transporter CO731_05501 PF12911 N-terminal TM domain of oligopeptide transport permease C CO731_05501 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05502 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05503 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CO731_05504 PF01968 Hydantoinase/oxoprolinase CO731_05504 PF05378 Hydantoinase/oxoprolinase N-terminal region CO731_05506 PF01546 Peptidase family M20/M25/M40 CO731_05506 PF07687 Peptidase dimerisation domain CO731_05507 PF07687 Peptidase dimerisation domain CO731_05507 PF01546 Peptidase family M20/M25/M40 CO731_05509 PF03776 Septum formation topological specificity factor MinE CO731_05510 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CO731_05511 PF03775 Septum formation inhibitor MinC, C-terminal domain CO731_05512 PF13936 Helix-turn-helix domain CO731_05512 PF00665 Integrase core domain CO731_05514 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CO731_05515 PF00873 AcrB/AcrD/AcrF family CO731_05516 PF03466 LysR substrate binding domain CO731_05516 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_05517 PF01979 Amidohydrolase family CO731_05518 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CO731_05518 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CO731_05518 PF01842 ACT domain CO731_05520 PF00266 Aminotransferase class-V CO731_05522 PF01425 Amidase CO731_05524 PF02789 Cytosol aminopeptidase family, N-terminal domain CO731_05524 PF00883 Cytosol aminopeptidase family, catalytic domain CO731_05531 PF00211 Adenylate and Guanylate cyclase catalytic domain CO731_05536 PF01654 Cytochrome bd terminal oxidase subunit I CO731_05537 PF02322 Cytochrome bd terminal oxidase subunit II CO731_05540 PF00155 Aminotransferase class I and II CO731_05540 PF00392 Bacterial regulatory proteins, gntR family CO731_05542 PF12327 FtsZ family, C-terminal domain CO731_05542 PF00091 Tubulin/FtsZ family, GTPase domain CO731_05543 PF03466 LysR substrate binding domain CO731_05543 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_05545 PF01546 Peptidase family M20/M25/M40 CO731_05545 PF07687 Peptidase dimerisation domain CO731_05547 PF00501 AMP-binding enzyme CO731_05547 PF13193 AMP-binding enzyme C-terminal domain CO731_05548 PF03301 Tryptophan 2,3-dioxygenase CO731_05550 PF02653 Branched-chain amino acid transport system / permease component CO731_05551 PF11862 Domain of unknown function (DUF3382) CO731_05551 PF02653 Branched-chain amino acid transport system / permease component CO731_05552 PF12399 Branched-chain amino acid ATP-binding cassette transporter CO731_05552 PF00005 ABC transporter CO731_05553 PF00005 ABC transporter CO731_05554 PF00266 Aminotransferase class-V CO731_05555 PF02653 Branched-chain amino acid transport system / permease component CO731_05556 PF09383 NIL domain CO731_05556 PF00005 ABC transporter CO731_05558 PF07729 FCD domain CO731_05558 PF00392 Bacterial regulatory proteins, gntR family CO731_05559 PF00291 Pyridoxal-phosphate dependent enzyme CO731_05559 PF13291 ACT domain CO731_05561 PF01494 FAD binding domain CO731_05562 PF00106 short chain dehydrogenase CO731_05563 PF00378 Enoyl-CoA hydratase/isomerase CO731_05564 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CO731_05564 PF02770 Acyl-CoA dehydrogenase, middle domain CO731_05564 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CO731_05567 PF00378 Enoyl-CoA hydratase/isomerase CO731_05567 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CO731_05567 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CO731_05568 PF00005 ABC transporter CO731_05568 PF08402 TOBE domain CO731_05569 PF00206 Lyase CO731_05569 PF14698 Argininosuccinate lyase C-terminal CO731_05570 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05572 PF13416 Bacterial extracellular solute-binding protein CO731_05573 PF00480 ROK family CO731_05576 PF00392 Bacterial regulatory proteins, gntR family CO731_05576 PF00155 Aminotransferase class I and II CO731_05577 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CO731_05578 PF00005 ABC transporter CO731_05579 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05582 PF00205 Thiamine pyrophosphate enzyme, central domain CO731_05582 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CO731_05582 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CO731_05583 PF03601 Conserved hypothetical protein 698 CO731_05584 PF01515 Phosphate acetyl/butaryl transferase CO731_05586 PF00083 Sugar (and other) transporter CO731_05589 PF01812 5-formyltetrahydrofolate cyclo-ligase family CO731_05590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CO731_05590 PF03466 LysR substrate binding domain CO731_05591 PF01053 Cys/Met metabolism PLP-dependent enzyme CO731_05593 PF00005 ABC transporter CO731_05594 PF00528 Binding-protein-dependent transport system inner membrane component CO731_05595 PF02082 Transcriptional regulator CO731_05599 PF03480 Bacterial extracellular solute-binding protein, family 7 CO731_05601 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CO731_05602 PF00561 alpha/beta hydrolase fold CO731_05603 PF00355 Rieske [2Fe-2S] domain CO731_05604 PF13417 Glutathione S-transferase, N-terminal domain CO731_05607 PF01557 Fumarylacetoacetate (FAA) hydrolase family CO731_05608 PF00175 Oxidoreductase NAD-binding domain CO731_05608 PF00111 2Fe-2S iron-sulfur cluster binding domain CO731_05610 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_05610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO731_05612 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO731_05612 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_05614 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO731_05614 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_05616 PF07992 Pyridine nucleotide-disulphide oxidoreductase CO731_05616 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CO731_05617 PF00589 Phage integrase family CO731_05617 PF02899 Phage integrase, N-terminal SAM-like domain CO731_05618 PF00589 Phage integrase family CO731_05619 PF00589 Phage integrase family CO731_05620 PF01548 Transposase CO731_05620 PF02371 Transposase IS116/IS110/IS902 family CO731_05622A PF00589 Phage integrase family CO731_05622A PF13356 Arm DNA-binding domain CO731_05623 PF03458 UPF0126 domain CO731_05630 PF03743 Bacterial conjugation TrbI-like protein CO731_05632 PF03524 Conjugal transfer protein CO731_05633 PF04335 VirB8 protein CO731_05634 PF04610 TrbL/VirB6 plasmid conjugal transfer protein CO731_05637 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO731_05638 PF05101 Type IV secretory pathway, VirB3-like protein CO731_05639 PF04956 TrbC/VIRB2 family CO731_05640 PF00437 Type II/IV secretion system protein CO731_05641 PF13614 AAA domain CO731_05642 PF02195 ParB-like nuclease domain CO731_05642 PF07506 RepB plasmid partitioning protein CO731_05643 PF11800 Replication protein C C-terminal region CO731_05643 PF03428 Replication protein C N-terminal domain CO731_05644 PF01381 Helix-turn-helix CO731_05645 PF05973 Phage derived protein Gp49-like (DUF891) CO731_05646 PF00239 Resolvase, N terminal domain CO731_05647 PF08401 Domain of unknown function (DUF1738) CO731_05647 PF18818 Metallopeptidase superfamily domain CO731_05647 PF13362 Toprim domain CO731_05649 PF01131 DNA topoisomerase CO731_05649 PF01751 Toprim domain CO731_05650 PF10502 Signal peptidase, peptidase S26 CO731_05651 PF02534 Type IV secretory system Conjugative DNA transfer CO731_05652 PF18821 Large polyvalent protein-associated domain 7 CO731_05652 PF03432 Relaxase/Mobilisation nuclease domain CO731_05655 PF17273 Family of unknown function (DUF5338) CO731_05656 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CO731_05657 PF11657 Transcriptional activator TraM CO731_05660 PF11740 Plasmid replication region DNA-binding N-term CO731_05661 PF02195 ParB-like nuclease domain CO731_05661 PF06613 KorB C-terminal beta-barrel domain CO731_05661 PF08535 KorB domain CO731_05662 PF13614 AAA domain CO731_05663 PF16509 TrfB plasmid transcriptional repressor CO731_05664 PF10959 Protein of unknown function (DUF2761) CO731_05665 PF17394 Uncharacterized KleE stable inheritance protein CO731_05666 PF17383 Uncharacterized KorC regulated protein A CO731_05670 PF03230 Antirestriction protein CO731_05671 PF04221 RelB antitoxin CO731_05672 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ CO731_05674 PF07042 TrfA protein CO731_05675 PF00436 Single-strand binding protein family CO731_05676 PF16509 TrfB plasmid transcriptional repressor CO731_05677 PF00437 Type II/IV secretion system protein CO731_05678 PF04956 TrbC/VIRB2 family CO731_05679 PF05101 Type IV secretory pathway, VirB3-like protein CO731_05680 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CO731_05681 PF01425 Amidase CO731_05684 PF13193 AMP-binding enzyme C-terminal domain CO731_05684 PF00501 AMP-binding enzyme CO731_05687 PF13700 Domain of unknown function (DUF4158) CO731_05687 PF01526 Tn3 transposase DDE domain