locus_tag old_locus_tag gene Name start end strand product note type ID NCBI Amico_0001 Amico_0001 Amico_0001 141 1469 + chromosomal replication initiator protein DnaA TIGRFAM: chromosomal replication initiator protein DnaA~PFAM: Chromosomal replication initiator DnaA%3B Chromosomal replication initiator DnaA domain~KEGG: pca:Pcar_0001 chromosomal replication initiator protein DnaA~SMART: Chromosomal replication initiator DnaA domain%3B AAA ATPase gene gene0 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0001 Amico_0002 Amico_0002 Amico_0002 1697 2848 + DNA polymerase III%2C beta subunit SMART: DNA polymerase III beta chain~TIGRFAM: DNA polymerase III%2C beta subunit~KEGG: csa:Csal_0002 DNA polymerase III subunit beta~PFAM: DNA polymerase III beta chain gene gene1 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0002 Amico_0003 Amico_0003 Amico_0003 2887 3906 + DNA replication and repair protein RecF KEGG: dze:Dd1591_0003 DNA replication and repair protein RecF~TIGRFAM: DNA replication and repair protein RecF~PFAM: SMC domain protein gene gene2 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0003 Amico_0004 Amico_0004 Amico_0004 3945 5843 + glucose inhibited division protein A KEGG: pca:Pcar_3141 tRNA uridine 5- carboxymethylaminomethyl modification enzyme GidA~TIGRFAM: glucose inhibited division protein A~PFAM: glucose-inhibited division protein A gene gene3 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0004 Amico_0005 Amico_0005 Amico_0005 5821 6294 + protein of unknown function DUF721 PFAM: protein of unknown function DUF721~KEGG: scl:sce9010 hypothetical protein gene gene4 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0005 Amico_0006 Amico_0006 Amico_0006 6322 6426 - hypothetical protein gene gene5 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0006 Amico_0007 Amico_0007 Amico_0007 6595 7347 + hypothetical protein gene gene6 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0007 Amico_0008 Amico_0008 Amico_0008 7390 8268 + Protein of unknown function DUF2179 PFAM: Protein of unknown function DUF2179%3B protein of unknown function DUF161~KEGG: sat:SYN_01478 hypothetical protein gene gene7 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0008 Amico_0009 Amico_0009 Amico_0009 8302 9153 + pantoate/beta-alanine ligase TIGRFAM: pantoate/beta-alanine ligase%3B cytidyltransferase-related domain protein~KEGG: gsu:GSU1706 pantoate--beta-alanine ligase~PFAM: Pantoate-beta-alanine ligase gene gene8 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0009 Amico_0010 Amico_0010 Amico_0010 9598 10578 + aspartate-semialdehyde dehydrogenase TIGRFAM: aspartate-semialdehyde dehydrogenase~KEGG: sfu:Sfum_3032 aspartate-semialdehyde dehydrogenase~PFAM: Semialdehyde dehydrogenase dimerisation region%3B Semialdehyde dehydrogenase NAD - binding gene gene9 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0010 Amico_0011 Amico_0011 Amico_0011 10593 11477 + dihydrodipicolinate synthase KEGG: ppd:Ppro_3063 dihydrodipicolinate synthase~TIGRFAM: dihydrodipicolinate synthase~PFAM: dihydrodipicolinate synthetase gene gene10 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0011 Amico_0012 Amico_0012 Amico_0012 11477 12139 + dihydrodipicolinate reductase TIGRFAM: dihydrodipicolinate reductase~KEGG: gsu:GSU0160 dihydrodipicolinate reductase~PFAM: dihydrodipicolinate reductase gene gene11 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0012 Amico_0013 Amico_0013 Amico_0013 12109 12807 + 2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylateN-ac etyltransferase KEGG: hypothetical protein~TIGRFAM:2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-acetyltransferase~PFAM: Tetrahydrodipicolinate succinyltransferase domain protein%3B transferase hexapeptide repeat containing protein gene gene12 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0013 Amico_0014 Amico_0014 Amico_0014 12825 14039 + aspartate kinase TIGRFAM: aspartate kinase~KEGG: dvm:DvMF_0276 aspartate kinase~PFAM: aspartate/glutamate/uridylate kinase%3B amino acid-binding ACT domain protein gene gene13 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0014 Amico_0015 Amico_0015 Amico_0015 14146 14463 - Dinitrogenase iron-molybdenum cofactor biosynthesis protein PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein~KEGG: sfu:Sfum_3412 dinitrogenase iron-molybdenum cofactor biosynthesis gene gene14 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0015 Amico_0016 Amico_0016 Amico_0016 14474 15352 - Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid ac-diamide synthase%3B 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: sfu:Sfum_3408 cobyrinic acid a%2Cc-diamide synthase gene gene15 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0016 Amico_0017 Amico_0017 Amico_0017 15349 16194 - Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid ac-diamide synthase%3B 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: pca:Pcar_1585 MinD family ATPase gene gene16 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0017 Amico_0018 Amico_0018 Amico_0018 16204 16554 - Dinitrogenase iron-molybdenum cofactor biosynthesis protein PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein~KEGG: dvu:DVU2109 hypothetical protein gene gene17 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0018 Amico_0019 Amico_0019 Amico_0019 16570 16860 - putative cytoplasmic protein KEGG: sat:SYN_01170 putative cytoplasmic protein gene gene18 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0019 Amico_0020 Amico_0020 Amico_0020 16959 17528 + ferric uptake regulator%2C Fur family PFAM: ferric-uptake regulator~KEGG: nis:NIS_1078 ferric uptake regulator gene gene19 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0020 Amico_0021 Amico_0021 Amico_0021 17669 18103 + response regulator receiver protein KEGG: mmb:Mmol_0127 response regulator receiver protein gene gene20 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0021 Amico_0022 Amico_0022 Amico_0022 18229 19008 - Creatininase PFAM: Creatininase~KEGG: bam:Bamb_3261 creatininase gene gene21 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0022 Amico_0023 Amico_0023 Amico_0023 19198 20379 + isoaspartyl dipeptidase KEGG: eum:ECUMN_4937 isoaspartyl dipeptidase~TIGRFAM: isoaspartyl dipeptidase~PFAM: amidohydrolase%3B Amidohydrolase 3 gene gene22 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0023 Amico_0024 Amico_0024 Amico_0024 20601 21218 + PHP domain protein KEGG: eba:ebA5293 hypothetical protein~PFAM: PHP domain protein~SMART: phosphoesterase PHP domain protein gene gene23 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0024 Amico_0025 Amico_0025 Amico_0025 21215 22090 - phosphatidate cytidylyltransferase PFAM: phosphatidate cytidylyltransferase~KEGG: hypothetical protein gene gene24 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0025 Amico_0026 Amico_0026 Amico_0026 22131 22898 - polysaccharide deacetylase PFAM: polysaccharide deacetylase~KEGG: glo:Glov_1064 polysaccharide deacetylase gene gene25 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0026 Amico_0027 Amico_0027 Amico_0027 22901 23965 - Fructose-bisphosphate aldolase KEGG: ect:ECIAI39_0920 fructose-bisphosphate aldolase~PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase gene gene26 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0027 Amico_0028 Amico_0028 Amico_0028 24062 24934 + 6-phosphogluconate dehydrogenase NAD-binding protein PFAM: 6-phosphogluconate dehydrogenase NAD-binding~KEGG: dat:HRM2_44930 YwkC gene gene27 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0028 Amico_0029 Amico_0029 Amico_0029 24987 25418 - conserved hypothetical protein KEGG: sfu:Sfum_3560 hypothetical protein gene gene28 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0029 Amico_0030 Amico_0030 Amico_0030 25494 25928 + MOSC domain containing protein KEGG: geo:Geob_1631 MOSC domain containing protein gene gene29 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0030 Amico_0031 Amico_0031 Amico_0031 25992 27575 - helicase domain protein KEGG: ade:Adeh_3405 DEAD/DEAH box helicase-like~PFAM: helicase domain protein%3B DEAD/DEAH box helicase domain protein~SMART: helicase domain protein%3B DEAD-like helicase gene gene30 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0031 Amico_0032 Amico_0032 Amico_0032 27662 28513 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: psp:PSPPH_4862 histidine ABC transporter%2C permease protein%2C putative gene gene31 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0032 Amico_0033 Amico_0033 Amico_0033 28494 29414 - ABC transporter related protein KEGG: swd:Swoo_1847 glycine betaine/L-proline ABC transporter%2C ATPase subunit~PFAM: ABC transporter related~SMART: AAA ATPase gene gene32 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0033 Amico_0034 Amico_0034 Amico_0034 29411 30433 - Substrate-binding region of ABC-type glycine betaine transport system PFAM: Substrate-binding region of ABC-type glycine betaine transport system~KEGG: dat:HRM2_38080 ProX gene gene33 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0034 Amico_0035 Amico_0035 Amico_0035 30535 30840 - putative TetR family transcriptional regulator KEGG: sml:Smlt3985 putative TetR family transcriptional regulator gene gene34 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0035 Amico_0036 Amico_0036 Amico_0036 31058 31318 + hypothetical protein gene gene35 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0036 Amico_0037 Amico_0037 Amico_0037 31340 32122 + inositol monophosphatase PFAM: inositol monophosphatase~KEGG: csa:Csal_1824 inositol-1(or 4)- monophosphatase gene gene36 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0037 Amico_0038 Amico_0038 Amico_0038 32263 33876 + Na/Pi-cotransporter II-related protein KEGG: pca:Pcar_1565 Na+/phosphate symporter~TIGRFAM: Na/Pi-cotransporter II-related protein~PFAM: Na+/Picotransporter%3B PhoU family protein gene gene37 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0038 Amico_0039 Amico_0039 Amico_0039 34014 34985 - biotin/acetyl-CoA-carboxylase ligase KEGG: mxa:MXAN_4152 BirA bifunctional protein~TIGRFAM: biotin/acetyl-CoA-carboxylase ligase~PFAM: biotin/lipoate A/B protein ligase%3B Helix-turn- helix type 11 domain protein%3B biotin protein ligase domain protein gene gene38 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0039 Amico_0040 Amico_0040 Amico_0040 35006 35805 - pseudogene gene39 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0040 Amico_0041 Amico_0041 Amico_0041 35964 36722 - ABC transporter related protein KEGG: vcj:VCD_000167 phosphate transport ATP- binding protein PstB~PFAM: ABC transporter related~SMART: AAA ATPase gene gene40 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0041 Amico_0042 Amico_0042 Amico_0042 36724 37566 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: dol:Dole_1927 phosphate ABC transporter%2C inner membrane subunit PstA gene gene41 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0042 Amico_0043 Amico_0043 Amico_0043 37560 38429 - phosphate ABC transporter%2C inner membrane subunit PstC KEGG: dvl:Dvul_0764 phosphate ABC transporter%2C inner membrane subunit PstC~TIGRFAM: phosphate ABC transporter%2C inner membrane subunit PstC~PFAM: binding-protein-dependent transport systems inner membrane component gene gene42 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0043 Amico_0044 Amico_0044 Amico_0044 38516 39397 - phosphate binding protein KEGG: dvl:Dvul_0765 phosphate binding protein gene gene43 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0044 Amico_0045 Amico_0045 Amico_0045 39540 40457 + 2-dehydropantoate 2-reductase TIGRFAM: 2-dehydropantoate 2-reductase~KEGG: afw:Anae109_2380 2-dehydropantoate 2- reductase~PFAM: Ketopantoate reductase ApbA/PanE domain protein gene gene44 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0045 Amico_0046 Amico_0046 Amico_0046 40599 41270 - polar amino acid ABC transporter%2C inner membrane subunit KEGG: sfu:Sfum_3900 binding-protein-dependent transport systems inner membrane component~TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~PFAM: binding-protein-dependent transport systems inner membrane component gene gene45 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0046 Amico_0047 Amico_0047 Amico_0047 41263 42042 - ABC transporter related protein KEGG: sfu:Sfum_3901 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene46 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0047 Amico_0048 Amico_0048 Amico_0048 42045 42719 - polar amino acid ABC transporter%2C inner membrane subunit KEGG: sfu:Sfum_3902 polar amino acid ABC transporter%2C inner membrane subunit~TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~PFAM: binding-protein-dependent transport systems inner membrane component gene gene47 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0048 Amico_0049 Amico_0049 Amico_0049 42835 43590 - extracellular solute-binding protein family 3 KEGG: dvl:Dvul_2548 extracellular solute-binding protein~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3 gene gene48 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0049 Amico_0050 Amico_0050 Amico_0050 43855 44598 + peptide methionine sulfoxide reductase Contains selenocysteine gene gene49 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0050 Amico_0051 Amico_0051 Amico_0051 44595 45017 - thioesterase superfamily protein PFAM: thioesterase superfamily protein~KEGG: geo:Geob_1166 thioesterase superfamily protein gene gene50 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0051 Amico_0052 Amico_0052 Amico_0052 45144 46268 + Monogalactosyldiacylglycerol synthase PFAM: Monogalactosyldiacylglycerol synthase%3B glycosyl transferase group 1%3B Glycosyltransferase 28 domain~KEGG: bur:Bcep18194_B0550 monogalactosyldiacylglycerol synthase gene gene51 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0052 Amico_0053 Amico_0053 Amico_0053 46386 47510 + periplasmic binding protein PFAM: periplasmic binding protein~KEGG: dde:Dde_1622 iron transport periplasmic binding protein gene gene52 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0053 Amico_0054 Amico_0054 Amico_0054 47521 48591 + transport system permease protein PFAM: transport system permease protein~KEGG: dal:Dalk_5081 transport system permease protein gene gene53 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0054 Amico_0055 Amico_0055 Amico_0055 48588 49343 + ABC transporter related protein KEGG: dal:Dalk_5082 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene54 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0055 Amico_0056 Amico_0056 Amico_0056 49345 49956 - formylmethanofuran dehydrogenase subunit E region PFAM: formylmethanofuran dehydrogenase subunit E region~KEGG: dde:Dde_1625 formylmethanofuran dehydrogenase%2C subunit E gene gene55 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0056 Amico_0057 Amico_0057 Amico_0057 50149 51252 + hypothetical protein gene gene56 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0057 Amico_0058 Amico_0058 Amico_0058 51260 51802 + phosphoribosyltransferase PFAM: phosphoribosyltransferase~KEGG: dps:DP0918 adenine phosphoribosyltransferase gene gene57 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0058 Amico_0059 Amico_0059 Amico_0059 51935 54061 - heavy metal translocating P-type ATPase KEGG: dol:Dole_0421 heavy metal translocating P- type ATPase~TIGRFAM: heavy metal translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC%3B cadmium-translocating P-type ATPase~PFAM: E1-E2 ATPase-associated domain protein%3B Heavy metal transport/detoxification protein%3B Haloacid dehalogenase domain protein hydrolase gene gene58 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0059 Amico_0060 Amico_0060 Amico_0060 54100 55263 - permease PFAM: permease~KEGG: dps:DP0945 hypothetical protein gene gene59 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0060 Amico_0061 Amico_0061 Amico_0061 55351 55593 - redox-active disulfide protein 2 TIGRFAM: redox-active disulfide protein 2~KEGG: dps:DP0946 hypothetical protein gene gene60 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0061 Amico_0062 Amico_0062 Amico_0062 55553 55933 - transcriptional regulator%2C ArsR family KEGG: dde:Dde_3721 ArsR family transcriptional regulator~PFAM: regulatory protein ArsR~SMART: regulatory protein ArsR gene gene61 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0062 Amico_0063 Amico_0063 Amico_0063 55990 56646 - ABC transporter related protein KEGG: dat:HRM2_23230 CbiO1~PFAM: ABC transporter related~SMART: AAA ATPase gene gene62 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0063 Amico_0064 Amico_0064 Amico_0064 56643 57365 - cobalt ABC transporter%2C inner membrane subunit CbiQ KEGG: dat:HRM2_23220 CbiQ1~TIGRFAM: cobalt ABC transporter%2C inner membrane subunit CbiQ~PFAM: cobalt transport protein gene gene63 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0064 Amico_0065 Amico_0065 Amico_0065 57355 57954 - conserved hypothetical protein KEGG: dvu:DVU1072 hypothetical protein gene gene64 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0065 Amico_0066 Amico_0066 Amico_0066 57945 58553 - cobalamin (vitamin B12) biosynthesis CbiM protein PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein~KEGG: dds:Ddes_1471 cobalamin (vitamin B12) biosynthesis CbiM protein gene gene65 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0066 Amico_0067 Amico_0067 Amico_0067 58553 59344 - Nickel transport complex%2C NikM subunit%2C transmembrane PFAM: Nickel transport complex%2C NikM subunit%2C transmembrane~KEGG: dol:Dole_2023 hypothetical protein gene gene66 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0067 Amico_0068 Amico_0068 Amico_0068 59569 60447 + phenazine biosynthesis protein PhzF family KEGG: rle:RL3189 putative phenazine biosynthesis protein~TIGRFAM: phenazine biosynthesis protein PhzF family~PFAM: Phenazine biosynthesis PhzC/PhzF protein gene gene67 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0068 Amico_0069 Amico_0069 Amico_0069 60499 62061 - polar amino acid ABC transporter%2C inner membrane subunit TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~PFAM: extracellular solute-binding protein family 3%3B binding-protein-dependent transport systems inner membrane component~KEGG: mxa:MXAN_5503 His/Glu/Gln/Arg/opine amino acid ABC transporter permease/periplasmic amino acid- binding protein~SMART: extracellular solute-binding protein family 3 gene gene68 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0069 Amico_0070 Amico_0070 Amico_0070 62062 62847 - ABC transporter related protein KEGG: shl:Shal_3486 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene69 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0070 Amico_0071 Amico_0071 Amico_0071 63054 64253 + threonine synthase KEGG: afw:Anae109_3605 threonine synthase~TIGRFAM: threonine synthase~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit gene gene70 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0071 Amico_0072 Amico_0072 Amico_0072 64277 65398 + threonine synthase KEGG: bja:bll7236 putative threonine synthase~TIGRFAM: threonine synthase~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit gene gene71 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0072 Amico_0073 Amico_0073 Amico_0073 65516 66706 + putative transcriptional regulator%2C GntR family PFAM: aminotransferase class I and II~KEGG: dma:DMR_38090 aminotransferase gene gene72 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0073 Amico_0074 Amico_0074 Amico_0074 66776 68122 - Polyferredoxin-like protein KEGG: gsu:GSU0126 iron-sulfur cluster-binding protein gene gene73 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0074 Amico_0075 Amico_0075 Amico_0075 68251 68352 - hypothetical protein gene gene74 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0075 Amico_0076 Amico_0076 Amico_0076 68599 69162 + CMP/dCMP deaminase zinc-binding protein PFAM: CMP/dCMP deaminase zinc-binding~KEGG: dvl:Dvul_2895 CMP/dCMP deaminase%2C zinc- binding gene gene75 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0076 Amico_0077 Amico_0077 Amico_0077 69181 69867 + L-serine dehydratase%2C iron-sulfur-dependent%2C beta subunit TIGRFAM: L-serine dehydratase%2C iron-sulfur- dependent%2C beta subunit~KEGG: psp:PSPPH_3461 L-serine ammonia-lyase~PFAM: serine dehydratase beta chain%3B amino acid- binding ACT domain protein gene gene76 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0077 Amico_0078 Amico_0078 Amico_0078 69864 70733 + L-serine dehydratase%2C iron-sulfur-dependent%2C alpha subunit TIGRFAM: L-serine dehydratase%2C iron-sulfur- dependent%2C alpha subunit~KEGG: dde:Dde_3111 L-serine ammonia-lyase~PFAM: serine dehydratase alpha chain gene gene77 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0078 Amico_0079 Amico_0079 Amico_0079 70737 70916 + hypothetical protein gene gene78 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0079 Amico_0080 Amico_0080 Amico_0080 70967 72496 + YbaK/prolyl-tRNA synthetase associated region PFAM: YbaK/prolyl-tRNA synthetase associated region%3B Anticodon-binding domain protein~KEGG: ppd:Ppro_1753 prolyl-tRNA synthetase gene gene79 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0080 Amico_0081 Amico_0081 Amico_0081 72546 73394 + PpiC-type peptidyl-prolyl cis-trans isomerase PFAM: PpiC-type peptidyl-prolyl cis-trans isomerase~KEGG: ppd:Ppro_3588 PpiC-type peptidyl-prolyl cis- trans isomerase gene gene80 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0081 Amico_0082 Amico_0082 Amico_0082 73492 74010 + conserved hypothetical protein KEGG: dvm:DvMF_2297 hypothetical protein gene gene81 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0082 Amico_0083 Amico_0083 Amico_0083 74027 74305 + protein of unknown function DUF997 PFAM: protein of unknown function DUF997~KEGG: dvu:DVU0087 hypothetical protein gene gene82 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0083 Amico_0084 Amico_0084 Amico_0084 74305 75780 + sodium/pantothenate symporter KEGG: dde:Dde_3321 sodium/panthothenate symporter~TIGRFAM: sodium/pantothenate symporter%3B SSS sodium solute transporter superfamily~PFAM: Na+/solute symporter gene gene83 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0084 Amico_0085 Amico_0085 Amico_0085 76008 76787 + transcriptional regulator%2C IclR family KEGG: ent:Ent638_2397 regulatory protein%2C IclR~PFAM: Transcriptional regulator IclR %3B regulatory protein IclR~SMART: regulatory protein IclR gene gene84 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0085 Amico_0086 Amico_0086 Amico_0086 76845 77669 + 3-methyl-2-oxobutanoatehydroxymethyltransferase TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase~KEGG: dps:DP2907 3-methyl-2-oxobutanoate hydroxymethyltransferase~PFAM: Ketopantoate hydroxymethyltransferase gene gene85 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0086 Amico_0087 Amico_0087 Amico_0087 77691 78617 + 2-dehydropantoate 2-reductase TIGRFAM: 2-dehydropantoate 2-reductase~KEGG: sfu:Sfum_2753 2-dehydropantoate 2-reductase~PFAM: Ketopantoate reductase ApbA/PanE domain protein%3B NAD-dependent glycerol-3-phosphate dehydrogenase domain protein gene gene86 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0087 Amico_0088 Amico_0088 Amico_0088 78631 79635 + TRAP dicarboxylate transporter%2C DctP subunit KEGG: pol:Bpro_0088 TRAP dicarboxylate transporter%2C DctP subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene87 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0088 Amico_0089 Amico_0089 Amico_0089 79725 80204 + Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: dal:Dalk_0472 tripartite ATP-independent periplasmic transporter DctQ component gene gene88 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0089 Amico_0090 Amico_0090 Amico_0090 80201 81481 + TRAP dicarboxylate transporter%2C DctM subunit KEGG: tmz:Tmz1t_0543 TRAP dicarboxylate transporter%2C DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit%3B Citrate transporter gene gene89 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0090 Amico_0091 Amico_0091 Amico_0091 81584 81682 + hypothetical protein gene gene90 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0091 Amico_0092 Amico_0092 Amico_0092 81803 81943 + hypothetical protein gene gene91 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0092 Amico_0093 Amico_0093 Amico_0093 82112 83494 + glucose-inhibited division protein A PFAM: glucose-inhibited division protein A%3B FAD dependent oxidoreductase~KEGG: sat:SYN_02917 FAD-dependent dehydrogenase gene gene92 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0093 Amico_0094 Amico_0094 Amico_0094 83507 84076 - nitroreductase PFAM: nitroreductase~KEGG: har:HEAR2542 putative oxidoreductase gene gene93 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0094 Amico_0095 Amico_0095 Amico_0095 84200 85216 + dihydroorotate dehydrogenase 2 KEGG: afw:Anae109_0808 dihydroorotate dehydrogenase 2 gene gene94 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0095 Amico_0096 Amico_0096 Amico_0096 85282 86208 - cysteine synthase KEGG: gur:Gura_3859 cysteine synthase A~TIGRFAM: cysteine synthase%3B cysteine synthase A~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit gene gene95 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0096 Amico_0097 Amico_0097 Amico_0097 86210 86875 - serine O-acetyltransferase KEGG: avn:Avin_40420 serine O-acetyltransferase~TIGRFAM: serine O-acetyltransferase gene gene96 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0097 Amico_0098 Amico_0098 Amico_0098 87217 88350 - 3-isopropylmalate dehydrogenase KEGG: dol:Dole_2219 3-isopropylmalate dehydrogenase~PFAM: isocitrate/isopropylmalate dehydrogenase gene gene97 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0098 Amico_0099 Amico_0099 Amico_0099 88347 88862 - 3-isopropylmalate dehydratase%2C small subunit KEGG: sfu:Sfum_3030 3-isopropylmalate dehydratase%2C small subunit~TIGRFAM: 3-isopropylmalate dehydratase%2C small subunit~PFAM: aconitate hydratase domain protein gene gene98 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0099 Amico_0100 Amico_0100 Amico_0100 88865 90154 - homoaconitate hydratase family protein KEGG: sfu:Sfum_3029 3-isopropylmalate dehydratase%2C large subunit~TIGRFAM: homoaconitate hydratase family protein%3B 3- isopropylmalate dehydratase~PFAM: aconitate hydratase domain protein gene gene99 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0100 Amico_0101 Amico_0101 Amico_0101 90135 91688 - 2-isopropylmalate synthase KEGG: eba:ebA7154 2-isopropylmalate synthase~TIGRFAM: 2-isopropylmalate synthase~PFAM: pyruvate carboxyltransferase%3B LeuA allosteric (dimerisation) domain gene gene100 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0101 Amico_0102 Amico_0102 Amico_0102 91795 91893 - hypothetical protein gene gene101 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0102 Amico_0103 Amico_0103 Amico_0103 91983 93191 - methyltransferase small PFAM: methyltransferase small%3B Protein of unknown function methylase putative~KEGG: glo:Glov_1090 protein of unknown function Met10 gene gene102 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0103 Amico_0104 Amico_0104 Amico_0104 93253 93978 - Lytic transglycosylase catalytic PFAM: Lytic transglycosylase catalytic~KEGG: bur:Bcep18194_B0495 lytic transglycosylase%2C catalytic gene gene103 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0104 Amico_0105 Amico_0105 Amico_0105 94296 95618 + electron transport complex%2C RnfABCDGE type%2C C subunit KEGG: sat:SYN_01664 electron transport complex protein%2C NADH-binding subunit~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C C subunit~PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit%3B Soluble ligand binding domain%3B 4Fe-4S ferredoxin iron-sulfur binding domain protein gene gene104 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0105 Amico_0106 Amico_0106 Amico_0106 95627 96562 + electron transport complex%2C RnfABCDGE type%2C D subunit KEGG: pca:Pcar_0262 NADH:ubiquinone oxidoreductase%2C RnfD subunit-like~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C D subunit~PFAM: NQR2 and RnfD family protein gene gene105 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0106 Amico_0107 Amico_0107 Amico_0107 96565 97134 + electron transport complex%2C RnfABCDGE type%2C G subunit KEGG: pca:Pcar_0261 NADH:ubiquinone oxidoreductase%2C RnfG subunit-like~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C G subunit~PFAM: FMN-binding domain protein gene gene106 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0107 Amico_0108 Amico_0108 Amico_0108 97134 97766 + electron transport complex%2C RnfABCDGE type%2C E subunit KEGG: pca:Pcar_0260 SoxR-reducing system protein RsxE~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C E subunit~PFAM: RnfA-Nqr electron transport subunit gene gene107 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0108 Amico_0109 Amico_0109 Amico_0109 97793 98371 + electron transport complex%2C RnfABCDGE type%2C A subunit KEGG: pca:Pcar_0265 NADH:ubiquinone oxidoreductase%2C RnfA subunit-like~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C A subunit~PFAM: RnfA-Nqr electron transport subunit gene gene108 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0109 Amico_0110 Amico_0110 Amico_0110 98386 99186 + electron transport complex%2C RnfABCDGE type%2C B subunit KEGG: pca:Pcar_0264 ferredoxin~TIGRFAM: electron transport complex%2C RnfABCDGE type%2C B subunit~PFAM: Fe-S cluster domain protein%3B 4Fe-4S ferredoxin iron-sulfur binding domain protein gene gene109 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0110 Amico_0111 Amico_0111 Amico_0111 99239 99748 - Heptaprenyl diphosphate synthase component I PFAM: Heptaprenyl diphosphate synthase component I~KEGG: pca:Pcar_0037 hypothetical protein gene gene110 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0111 Amico_0112 Amico_0112 Amico_0112 99764 100147 - protein of unknown function DUF1312 PFAM: protein of unknown function DUF1312~KEGG: dar:Daro_0069 hypothetical protein gene gene111 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0112 Amico_0113 Amico_0113 Amico_0113 100131 101168 - ApbE family lipoprotein PFAM: ApbE family lipoprotein~KEGG: eca:ECA1970 putative thiamine biosynthesis protein gene gene112 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0113 Amico_0114 Amico_0114 Amico_0114 101559 102917 + amino acid carrier protein KEGG: cco:CCC13826_1827 branched-chain amino acid transport protein~TIGRFAM: amino acid carrier protein~PFAM: sodium:alanine symporter gene gene113 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0114 Amico_0115 Amico_0115 Amico_0115 103014 105827 - protein of unknown function UPF0182 PFAM: protein of unknown function UPF0182~KEGG: sun:SUN_1015 hypothetical protein gene gene114 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0115 Amico_0116 Amico_0116 Amico_0116 105924 106418 + protein of unknown function UPF0066 PFAM: protein of unknown function UPF0066~KEGG: sfu:Sfum_0270 hypothetical protein gene gene115 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0116 Amico_0117 Amico_0117 Amico_0117 106550 106930 + endoribonuclease L-PSP KEGG: gsu:GSU2235 endoribonuclease L-PSP%2C putative~TIGRFAM: endoribonuclease L-PSP~PFAM: Endoribonuclease L-PSP gene gene116 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0117 Amico_0118 Amico_0118 Amico_0118 107071 108405 + protein of unknown function DUF1063 PFAM: protein of unknown function DUF1063~KEGG: dal:Dalk_4447 protein of unknown function DUF1063 gene gene117 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0118 Amico_0119 Amico_0119 Amico_0119 108483 109664 - aminotransferase class I and II PFAM: aminotransferase class I and II~KEGG: ypi:YpsIP31758_1307 aminotransferase%2C classes I and II gene gene118 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0119 Amico_0120 Amico_0120 Amico_0120 109869 112445 + ribonucleoside-diphosphate reductase%2C adenosylcobalamin-dependent KEGG: dde:Dde_0113 ribonucleotide-diphosphate reductase subunit alpha~TIGRFAM: ribonucleoside-diphosphate reductase%2C adenosylcobalamin-dependent~PFAM: ribonucleotide reductase large subunit%3B Ribonucleotide reductase large subunit domain protein gene gene119 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0120 Amico_0121 Amico_0121 Amico_0121 115118 115225 - hypothetical protein gene gene120 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0121 Amico_0122 Amico_0122 Amico_0122 115215 115499 - CRISPR-associated protein Cas2 KEGG: mxa:MXAN_7259 CRISPR-associated Cas2 family protein~TIGRFAM: CRISPR-associated protein Cas2~PFAM: protein of unknown function DUF196 gene gene121 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0122 Amico_0123 Amico_0123 Amico_0123 115516 117165 - CRISPR-associated protein Cas1 KEGG: mxa:MXAN_7260 CRISPR-associated exonuclease Cas4/Cas1 family protein~TIGRFAM: CRISPR-associated protein Cas1%3B CRISPR- associated protein Cas4~PFAM: protein of unknown function DUF48%3B CRISPR- associated protein Cas4 gene gene122 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0123 Amico_0124 Amico_0124 Amico_0124 117162 117842 - CRISPR-associated protein DevS TIGRFAM: CRISPR-associated protein DevS%3B CRISPR- associated protein Cas5~KEGG: scl:sce9175 fruiting body developmental protein S gene gene123 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0124 Amico_0125 Amico_0125 Amico_0125 117848 118768 - hypothetical protein KEGG: scl:sce9174 fruiting body developmental protein R gene gene124 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0125 Amico_0126 Amico_0126 Amico_0126 118794 120596 - hypothetical protein gene gene125 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0126 Amico_0127 Amico_0127 Amico_0127 120626 122908 - CRISPR-associated helicase Cas3 TIGRFAM: CRISPR-associated helicase Cas3%3B CRISPR- associated HD domain protein~PFAM: helicase domain protein~KEGG: mxa:MXAN_7264 CRISPR-associated helicase Cas3~SMART: helicase domain protein%3B DEAD-like helicase gene gene126 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0127 Amico_0128 Amico_0128 Amico_0128 122913 123560 - CRISPR-associated protein%2C Cas6-related protein KEGG: scl:sce9171 hypothetical protein~TIGRFAM: CRISPR-associated protein%2C Cas6-related~PFAM: CRISPR-associated protein Cas6-related gene gene127 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0128 Amico_0129 Amico_0129 Amico_0129 124125 124630 - pseudogene gene128 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0129 Amico_0130 Amico_0130 Amico_0130 125015 125725 + GntR domain protein KEGG: sde:Sde_1270 GntR family transcriptional regulator~PFAM: GntR domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene129 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0130 Amico_0131 Amico_0131 Amico_0131 126046 127050 + TRAP dicarboxylate transporter%2C DctP subunit KEGG: bmj:BMULJ_05545 PTRAP-type C4-dicarboxylate transport system periplasmic component~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene130 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0131 Amico_0132 Amico_0132 Amico_0132 127151 127696 + Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: bbr:BB3422 putative inner membrane transport protein gene gene131 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0132 Amico_0133 Amico_0133 Amico_0133 127690 128973 + TRAP dicarboxylate transporter%2C DctM subunit KEGG: pau:PA14_68290 C4-dicarboxylate transporter~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene132 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0133 Amico_0134 Amico_0134 Amico_0134 129064 129954 + hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C alpha subunit KEGG: dde:Dde_1255 fumarate hydratase~TIGRFAM: hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C alpha subunit~PFAM: Fe-S type hydro-lyase tartrate/fumarate alpha region gene gene133 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0134 Amico_0135 Amico_0135 Amico_0135 129970 130557 + hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C beta subunit TIGRFAM: hydro-lyase%2C Fe-S type%2C tartrate/fumarate subfamily%2C beta subunit~KEGG: cco:CCC13826_1007 L(+)-tartrate dehydratase subunit beta~PFAM: Fe-S type hydro-lyase tartrate/fumarate beta region gene gene134 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0135 Amico_0136 Amico_0136 Amico_0136 130606 132003 + fumarate hydratase%2C class II KEGG: tdn:Suden_1049 fumarate hydratase~TIGRFAM: fumarate hydratase%2C class II~PFAM: fumarate lyase%3B Fumarase C-like gene gene135 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0136 Amico_0137 Amico_0137 Amico_0137 132057 133385 + Malate dehydrogenase (oxaloacetate- decarboxylating) KEGG: malic enzyme %3B K00027 malate dehydrogenase (oxaloacetate-decarboxylating)~PFAM: malic protein NAD-binding%3B malic protein domain protein gene gene136 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0137 Amico_0138 Amico_0138 Amico_0138 133501 134856 + MmgE/PrpD family protein PFAM: MmgE/PrpD family protein~KEGG: sfu:Sfum_0172 MmgE/PrpD family protein gene gene137 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0138 Amico_0139 Amico_0139 Amico_0139 134980 135552 - Protein of unknown function DUF1847 PFAM: Protein of unknown function DUF1847~KEGG: ppd:Ppro_1050 hypothetical protein gene gene138 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0139 Amico_0140 Amico_0140 Amico_0140 135678 136484 - Patatin PFAM: Patatin~KEGG: tdn:Suden_1321 patatin gene gene139 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0140 Amico_0141 Amico_0141 Amico_0141 136662 137528 + transcriptional regulator%2C RpiR family PFAM: sugar isomerase (SIS)%3B helix-turn-helix protein RpiR~KEGG: rpi:Rpic_1250 transcriptional regulator%2C RpiR family gene gene140 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0141 Amico_0142 Amico_0142 Amico_0142 137525 138724 + aminotransferase class I and II PFAM: aminotransferase class I and II~KEGG: mes:Meso_2107 aspartate aminotransferase gene gene141 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0142 Amico_0143 Amico_0143 Amico_0143 138795 139763 + conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: bpt:Bpet3357 putative secreted protein gene gene142 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0143 Amico_0144 Amico_0144 Amico_0144 139918 140319 + conserved hypothetical protein KEGG: ebr:ECB_03720 hypothetical protein gene gene143 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0144 Amico_0145 Amico_0145 Amico_0145 140330 141841 + protein of unknown function DUF112 transmembrane PFAM: protein of unknown function DUF112 transmembrane~KEGG: pmr:PMI2935 hypothetical protein gene gene144 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0145 Amico_0146 Amico_0146 Amico_0146 141858 142847 + pyruvate carboxyltransferase PFAM: pyruvate carboxyltransferase~KEGG: bps:BPSS1807 4-hydroxy-2-ketovalerate aldolase gene gene145 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0146 Amico_0147 Amico_0147 Amico_0147 143152 144360 + S-adenosylmethionine synthetase TIGRFAM: S-adenosylmethionine synthetase~KEGG: methionine adenosyltransferase~PFAM: S-adenosylmethionine synthetase gene gene146 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0147 Amico_0148 Amico_0148 Amico_0148 144415 145464 - Pyrrolo-quinoline quinone KEGG: hypothetical protein~PFAM: Pyrrolo-quinoline quinone~SMART: Pyrrolo-quinoline quinone beta-propeller repeat gene gene147 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0148 Amico_0149 Amico_0149 Amico_0149 145645 146739 + conserved hypothetical protein KEGG: dat:HRM2_44840 hypothetical protein gene gene148 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0149 Amico_0150 Amico_0150 Amico_0150 146752 146970 + SirA family protein PFAM: SirA family protein~KEGG: sfu:Sfum_3169 SirA family protein gene gene149 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0150 Amico_0151 Amico_0151 Amico_0151 147131 148222 + 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase NPD~KEGG: glo:Glov_0358 2-nitropropane dioxygenase NPD gene gene150 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0151 Amico_0152 Amico_0152 Amico_0152 148309 150618 + MscS Mechanosensitive ion channel PFAM: MscS Mechanosensitive ion channel~KEGG: mca:MCA1632 mechanosensitive ion channel family protein gene gene151 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0152 Amico_0153 Amico_0153 Amico_0153 150615 152270 + peptidase M20 PFAM: peptidase M20~KEGG: oan:Oant_3500 peptidase M20 gene gene152 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0153 Amico_0154 Amico_0154 Amico_0154 152411 153499 - conserved hypothetical protein KEGG: dde:Dde_0554 hypothetical protein gene gene153 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0154 Amico_0155 Amico_0155 Amico_0155 153635 154816 + Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: ank:AnaeK_4395 extracellular ligand-binding receptor gene gene154 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0155 Amico_0156 Amico_0156 Amico_0156 154909 155778 + inner-membrane translocator PFAM: inner-membrane translocator~KEGG: dma:DMR_22440 ABC transporter permease protein gene gene155 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0156 Amico_0157 Amico_0157 Amico_0157 155789 156655 + inner-membrane translocator PFAM: inner-membrane translocator~KEGG: gem:GM21_2271 inner-membrane translocator gene gene156 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0157 Amico_0158 Amico_0158 Amico_0158 156639 157412 + ABC transporter related protein KEGG: bba:Bd3388 branched-chain amino acid transport system~PFAM: ABC transporter related~SMART: AAA ATPase gene gene157 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0158 Amico_0159 Amico_0159 Amico_0159 157409 158152 + ABC transporter related protein KEGG: dal:Dalk_3944 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene158 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0159 Amico_0160 Amico_0160 Amico_0160 158247 159368 - aminotransferase class I and II PFAM: aminotransferase class I and II~KEGG: dal:Dalk_5023 aminotransferase class I and II gene gene159 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0160 Amico_0161 Amico_0161 Amico_0161 159390 159671 - MoaD family protein KEGG: gsu:GSU0908 MoaD family protein~TIGRFAM: MoaD family protein~PFAM: thiamineS protein gene gene160 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0161 Amico_0162 Amico_0162 Amico_0162 159826 160242 + transcriptional regulator%2C BadM/Rrf2 family KEGG: gur:Gura_3908 BadM/Rrf2 family transcriptional regulator~TIGRFAM: transcriptional regulator%2C Rrf2 family~PFAM: protein of unknown function UPF0074 gene gene161 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0162 Amico_0163 Amico_0163 Amico_0163 160271 161473 + cysteine desulfurase NifS TIGRFAM: cysteine desulfurase NifS~KEGG: sat:SYN_01251 cysteine desulfurase / selenocysteine lyase~PFAM: aminotransferase class V%3B aromatic amino acid beta-eliminating lyase/threonine aldolase gene gene162 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0163 Amico_0164 Amico_0164 Amico_0164 161463 161906 + FeS cluster assembly scaffold protein NifU KEGG: dol:Dole_0755 NifU domain-containing protein~TIGRFAM: FeS cluster assembly scaffold protein NifU~PFAM: nitrogen-fixing NifU domain protein gene gene163 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0164 Amico_0165 Amico_0165 Amico_0165 161909 162595 + UBA/THIF-type NAD/FAD binding protein PFAM: UBA/THIF-type NAD/FAD binding protein~KEGG: gur:Gura_1193 UBA/ThiF-type NAD/FAD binding protein gene gene164 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0165 Amico_0166 Amico_0166 Amico_0166 162610 163170 + DNA-3-methyladenine glycosylase I TIGRFAM: DNA-3-methyladenine glycosylase I~KEGG: vfi:VF_A0815 3-methyl-adenine DNA glycosylase I%2C constitutive~PFAM: methyladenine glycosylase gene gene165 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0166 Amico_0167 Amico_0167 Amico_0167 163174 164994 - Aldehyde ferredoxin oxidoreductase PFAM: aldehyde ferredoxin oxidoreductase%3B Aldehyde ferredoxin oxidoreductase~KEGG: pca:Pcar_2514 aldehyde:ferredoxin oxidoreductase~SMART: Aldehyde ferredoxin oxidoreductase gene gene166 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0167 Amico_0168 Amico_0168 Amico_0168 165094 166041 + cation diffusion facilitator family transporter KEGG: dat:HRM2_42030 hypothetical protein~TIGRFAM: cation diffusion facilitator family transporter~PFAM: cation efflux protein gene gene167 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0168 Amico_0169 Amico_0169 Amico_0169 166134 167108 + chaperone DnaJ domain protein KEGG: afr:AFE_3102 curved DNA-binding protein~PFAM: chaperone DnaJ domain protein%3B heat shock protein DnaJ domain protein~SMART: heat shock protein DnaJ domain protein gene gene168 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0169 Amico_0170 Amico_0170 Amico_0170 167102 169312 - penicillin-binding protein 1C KEGG: dma:DMR_17570 penicillin-binding protein 1C~TIGRFAM: penicillin-binding protein 1C~PFAM: glycosyl transferase family 51%3B Penicillin- binding domain protein%3B penicillin-binding protein transpeptidase gene gene169 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0170 Amico_0171 Amico_0171 Amico_0171 169287 174566 - alpha-2-macroglobulin domain protein PFAM: alpha-2-macroglobulin domain protein%3B alpha-2- macroglobulin domain protein 2~KEGG: dma:DMR_29510 hypothetical protein gene gene170 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0171 Amico_0172 Amico_0172 Amico_0172 174835 177459 + ATP-dependent chaperone ClpB TIGRFAM: ATP-dependent chaperone ClpB~PFAM: ATPase AAA-2 domain protein%3B Clp ATPase-like%3B AAA ATPase central domain protein%3B Torsin%3B ATPase associated with various cellular activities AAA_5%3B Clp domain protein~KEGG: sfu:Sfum_0263 ATPase~SMART: AAA ATPase gene gene171 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0172 Amico_0173 Amico_0173 Amico_0173 177568 179217 + peptidase U34 dipeptidase PFAM: peptidase U34 dipeptidase~KEGG: sun:SUN_0886 dipeptidase gene gene172 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0173 Amico_0174 Amico_0174 Amico_0174 179220 181169 + signal transduction histidine kinase regulating citrate/malate metabolism KEGG: maq:Maqu_2898 signal transduction histidine kinase regulating citrate/malate metabolism~PFAM: ATP-binding region ATPase domain protein%3B extracellular solute-binding protein family 3~SMART: ATP-binding region ATPase domain protein%3B extracellular solute-binding protein family 3 gene gene173 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0174 Amico_0175 Amico_0175 Amico_0175 181162 181842 + response regulator receiver and unknown domain protein KEGG: sfu:Sfum_3992 response regulator receiver/unknown domain-containing protein~PFAM: response regulator receiver~SMART: response regulator receiver gene gene174 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0175 Amico_0176 Amico_0176 Amico_0176 182086 182676 + hypothetical protein gene gene175 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0176 Amico_0177 Amico_0177 Amico_0177 182747 184075 + TRAP C4-dicarboxylate transport system permease DctM subunit PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit~KEGG: aha:AHA_2628 arginine/ornithine antiporter gene gene176 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0177 Amico_0178 Amico_0178 Amico_0178 184082 184246 + hypothetical protein gene gene177 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0178 Amico_0179 Amico_0179 Amico_0179 184263 185432 + hypothetical protein KEGG: mlo:mlr6093 hypothetical protein gene gene178 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0179 Amico_0180 Amico_0180 Amico_0180 185568 187184 + peptidase U34 dipeptidase PFAM: peptidase U34 dipeptidase~KEGG: dal:Dalk_1471 peptidase U34 dipeptidase gene gene179 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0180 Amico_0181 Amico_0181 Amico_0181 187297 187623 + Cupin 2 conserved barrel domain protein PFAM: Cupin 2 conserved barrel domain protein~KEGG: rpa:RPA1299 hypothetical protein gene gene180 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0181 Amico_0182 Amico_0182 Amico_0182 187703 188884 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: dat:HRM2_21780 Fsr gene gene181 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0182 Amico_0183 Amico_0183 Amico_0183 188893 189171 + acylphosphatase PFAM: acylphosphatase~KEGG: sat:SYN_02936 acylphosphatase gene gene182 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0183 Amico_0184 Amico_0184 Amico_0184 189187 189372 - histone deacetylase superfamily protein KEGG: tdn:Suden_1813 histone deacetylase superfamily protein gene gene183 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0184 Amico_0185 Amico_0185 Amico_0185 189375 190676 - lysine 2%2C3-aminomutase YodO family protein TIGRFAM: lysine 2%2C3-aminomutase YodO family protein~KEGG: dde:Dde_0189 L-lysine 2%2C3-aminomutase~PFAM: Radical SAM domain protein gene gene184 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0185 Amico_0186 Amico_0186 Amico_0186 190678 191151 - GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: mxa:MXAN_5952 putative acetyltransferase gene gene185 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0186 Amico_0187 Amico_0187 Amico_0187 191138 192190 - D-alanine--D-alanine ligase KEGG: scl:sce2763 putative D-alanine--D-alanine ligase A~PFAM: D-alanine--D-alanine ligase domain protein%3B protein of unknown function DUF201 gene gene186 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0187 Amico_0188 Amico_0188 Amico_0188 192193 193296 - D-alanine--D-alanine ligase KEGG: mxa:MXAN_4097 D-alanine-D-alanine ligase family protein~PFAM: D-alanine--D-alanine ligase domain protein%3B protein of unknown function DUF201 gene gene187 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0188 Amico_0189 Amico_0189 Amico_0189 193543 194691 - putative cytoplasmic protein KEGG: sat:SYN_02193 putative cytoplasmic protein gene gene188 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0189 Amico_0190 Amico_0190 Amico_0190 194751 195557 - Linocin_M18 bacteriocin protein PFAM: Linocin_M18 bacteriocin protein~KEGG: dma:DMR_17160 putative bacteriocin gene gene189 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0190 Amico_0191 Amico_0191 Amico_0191 195597 195995 - conserved hypothetical protein KEGG: dma:DMR_17170 hypothetical protein gene gene190 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0191 Amico_0192 Amico_0192 Amico_0192 196015 196506 - heat shock protein Hsp20 PFAM: heat shock protein Hsp20~KEGG: gsu:GSU0538 HSP20 family protein gene gene191 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0192 Amico_0193 Amico_0193 Amico_0193 196744 197316 + flavin reductase domain protein FMN-binding protein PFAM: flavin reductase domain protein FMN-binding~KEGG: gme:Gmet_0805 flavin reductase-like%2C FMN- binding gene gene192 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0193 Amico_0194 Amico_0194 Amico_0194 197401 199227 + oligoendopeptidase F KEGG: probabale oligoendopeptidase F %3B K08602 oligoendopeptidase F~TIGRFAM: oligoendopeptidase F~PFAM: peptidase M3A and M3B thimet/oligopeptidase F%3B Oligopeptidase F gene gene193 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0194 Amico_0195 Amico_0195 Amico_0195 199441 200355 - transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: aeh:Mlg_1449 LysR family transcriptional regulator gene gene194 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0195 Amico_0196 Amico_0196 Amico_0196 200465 201658 + peptidase dimerization domain protein PFAM: peptidase dimerisation domain protein%3B peptidase M20~KEGG: dde:Dde_1267 peptidase gene gene195 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0196 Amico_0197 Amico_0197 Amico_0197 201794 203050 + Glycine hydroxymethyltransferase KEGG: gbm:Gbem_3102 glycine hydroxymethyltransferase~PFAM: glycine hydroxymethyltransferase%3B Orn/Lys/Arg decarboxylase major region%3B aromatic amino acid beta- eliminating lyase/threonine aldolase gene gene196 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0197 Amico_0198 Amico_0198 Amico_0198 203084 204553 + Pyridoxal-5'-phosphate-dependent protein beta subunit PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit~KEGG: Pyridoxal-phosphate dependent enzyme family protein gene gene197 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0198 Amico_0199 Amico_0199 Amico_0199 204777 205859 + Extracellular solute-binding protein%2C family 7 PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~KEGG: dvm:DvMF_1932 TRAP dicarboxylate transporter%2C DctP subunit gene gene198 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0199 Amico_0200 Amico_0200 Amico_0200 206028 206552 + hypothetical protein KEGG: dps:DP1511 DctQ (C4-dicarboxylate permease%2C small subunit) gene gene199 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0200 Amico_0201 Amico_0201 Amico_0201 206553 207887 + TRAP dicarboxylate transporter%2C DctM subunit KEGG: dat:HRM2_42860 DctM9~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit%3B Citrate transporter gene gene200 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0201 Amico_0202 Amico_0202 Amico_0202 207927 209513 + N-acyl-D-aspartate deacylase KEGG: dde:Dde_1269 N-acyl-D-amino-acid deacylase~PFAM: D-aminoacylase domain protein%3B Amidohydrolase 3 gene gene201 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0202 Amico_0203 Amico_0203 Amico_0203 209562 210743 + peptidase M20 PFAM: peptidase M20%3B peptidase dimerisation domain protein~KEGG: dde:Dde_1267 peptidase gene gene202 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0203 Amico_0204 Amico_0204 Amico_0204 211186 212133 + carbamate kinase TIGRFAM: carbamate kinase~KEGG: Carbamate kinase %3B K00926 carbamate kinase~PFAM: aspartate/glutamate/uridylate kinase gene gene203 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0204 Amico_0205 Amico_0205 Amico_0205 212275 213861 + N-acyl-D-glutamate deacylase KEGG: dde:Dde_1269 N-acyl-D-amino-acid deacylase~PFAM: D-aminoacylase domain protein%3B Amidohydrolase 3 gene gene204 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0205 Amico_0206 Amico_0206 Amico_0206 213942 215504 - transcriptional regulator%2C PucR family PFAM: purine catabolism PurC domain protein~KEGG: ppu:PP_3188 hypothetical protein gene gene205 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0206 Amico_0207 Amico_0207 Amico_0207 215715 216008 + pseudogene gene206 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0207 Amico_0208 Amico_0208 Amico_0208 216082 217155 + Extracellular solute-binding protein%2C family 7 PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~KEGG: dde:Dde_1275 TRAP dicarboxylate transporter%2C DctP subunit gene gene207 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0208 Amico_0209 Amico_0209 Amico_0209 217338 217877 + hypothetical protein KEGG: hch:HCH_06606 TRAP-type C4-dicarboxylate transport system%2C small permease component gene gene208 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0209 Amico_0210 Amico_0210 Amico_0210 217878 219215 + TRAP dicarboxylate transporter%2C DctM subunit KEGG: dps:DP0487 DctM (C4-dicarboxylate permease%2C large subunit)~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene209 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0210 Amico_0211 Amico_0211 Amico_0211 219300 220895 + N-acyl-D-amino-acid deacylase KEGG: geo:Geob_0285 N-acyl-D-aspartate deacylase~PFAM: D-aminoacylase domain protein%3B amidohydrolase%3B Amidohydrolase 3 gene gene210 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0211 Amico_0212 Amico_0212 Amico_0212 220932 222056 + alanine racemase TIGRFAM: alanine racemase~KEGG: sat:SYN_01482 alanine racemase~PFAM: alanine racemase domain protein gene gene211 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0212 Amico_0213 Amico_0213 Amico_0213 222213 223475 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: azo:azo2084 putative membrane transport protein gene gene212 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0213 Amico_0214 Amico_0214 Amico_0214 223478 225217 - small GTP-binding protein KEGG: gsu:GSU1380 ferrous iron transport protein B~TIGRFAM: small GTP-binding protein~PFAM: GTP-binding protein HSR1-related%3B nucleoside recognition domain protein%3B Ferrous iron transport B domain protein gene gene213 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0214 Amico_0215 Amico_0215 Amico_0215 225207 225467 - FeoA family protein PFAM: FeoA family protein gene gene214 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0215 Amico_0216 Amico_0216 Amico_0216 225445 226488 - radical SAM enzyme%2C Cfr family KEGG: maq:Maqu_1124 radical SAM protein~TIGRFAM: radical SAM enzyme%2C Cfr family~PFAM: Radical SAM domain protein gene gene215 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0216 Amico_0217 Amico_0217 Amico_0217 226795 227862 + Extracellular solute-binding protein%2C family 7 PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~KEGG: dde:Dde_1275 TRAP dicarboxylate transporter%2C DctP subunit gene gene216 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0217 Amico_0218 Amico_0218 Amico_0218 227999 228292 - formate dehydrogenase subunit gamma KEGG: pfl:PFL_0331 formate dehydrogenase subunit gamma gene gene217 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0218 Amico_0219 Amico_0219 Amico_0219 228413 229225 + zinc/iron permease PFAM: zinc/iron permease~KEGG: pca:Pcar_1977 hypothetical protein gene gene218 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0219 Amico_0220 Amico_0220 Amico_0220 229262 229816 + protein of unknown function DUF204 PFAM: protein of unknown function DUF204~KEGG: pca:Pcar_2070 hypothetical protein gene gene219 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0220 Amico_0221 Amico_0221 Amico_0221 229774 230811 + hypothetical protein KEGG: ilo:IL2400 NAD-dependent epimerase/dehydratase gene gene220 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0221 Amico_0222 Amico_0222 Amico_0222 230804 231247 + capsule biosynthesis protein CapC KEGG: ftm:FTM_1027 capsule biosynthesis protein CapC gene gene221 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0222 Amico_0223 Amico_0223 Amico_0223 231255 232343 + hypothetical protein KEGG: ilo:IL2402 hypothetical protein gene gene222 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0223 Amico_0224 Amico_0224 Amico_0224 232340 232975 + response regulator receiver and unknown domain protein KEGG: sdn:Sden_1917 response regulator receiver~PFAM: response regulator receiver~SMART: response regulator receiver gene gene223 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0224 Amico_0225 Amico_0225 Amico_0225 232972 234240 + Protein of unknown function DUF2088 PFAM: Protein of unknown function DUF2088~KEGG: dat:HRM2_08470 hypothetical protein gene gene224 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0225 Amico_0226 Amico_0226 Amico_0226 234292 235044 - extracellular solute-binding protein family 3 KEGG: cha:CHAB381_0434 arginine-binding periplasmic protein 1~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3%3B ionotropic glutamate receptor gene gene225 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0226 Amico_0227 Amico_0227 Amico_0227 235168 236361 + putative transcriptional regulator%2C GntR family PFAM: aminotransferase class I and II~KEGG: cti:RALTA_B1645 putative amino transferase gene gene226 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0227 Amico_0228 Amico_0228 Amico_0228 236700 237992 + diaminopimelate decarboxylase KEGG: saz:Sama_3250 diaminopimelate decarboxylase~TIGRFAM: diaminopimelate decarboxylase~PFAM: Orn/DAP/Arg decarboxylase 2 gene gene227 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0228 Amico_0229 Amico_0229 Amico_0229 238034 239692 + Na+/H+ antiporter NhaC-like protein PFAM: Na+/H+ antiporter NhaC-like~KEGG: dde:Dde_0208 hypothetical protein gene gene228 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0229 Amico_0230 Amico_0230 Amico_0230 239787 240632 + diaminopimelate epimerase TIGRFAM: diaminopimelate epimerase~KEGG: sat:SYN_00169 diaminopimelate epimerase~PFAM: diaminopimelate epimerase gene gene229 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0230 Amico_0231 Amico_0231 Amico_0231 240666 244040 + AsmA family protein PFAM: AsmA family protein~KEGG: rlt:Rleg2_3627 protein of unknown function DUF490 gene gene230 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0231 Amico_0232 Amico_0232 Amico_0232 244086 245537 - glycogen/starch synthase%2C ADP-glucose type TIGRFAM: glycogen/starch synthase%2C ADP-glucose type~KEGG: geo:Geob_1010 glycogen/starch synthase%2C ADP- glucose type~PFAM: Starch synthase catalytic domain protein%3B glycosyl transferase group 1 gene gene231 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0232 Amico_0233 Amico_0233 Amico_0233 245572 247305 - alpha-glucan phosphorylase TIGRFAM: alpha-glucan phosphorylase~KEGG: pca:Pcar_1731 glucan phosphorylase~PFAM: glycosyl transferase family 35 gene gene232 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0233 Amico_0234 Amico_0234 Amico_0234 247325 248818 - 4-alpha-glucanotransferase TIGRFAM: 4-alpha-glucanotransferase~KEGG: sfu:Sfum_3452 4-alpha-glucanotransferase~PFAM: glycoside hydrolase family 77 gene gene233 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0234 Amico_0235 Amico_0235 Amico_0235 248928 250829 + 1%2C4-alpha-glucan branching enzyme TIGRFAM: 1%2C4-alpha-glucan branching enzyme~PFAM: alpha amylase all-beta%3B glycoside hydrolase family 13 domain protein%3B alpha amylase catalytic region~KEGG: sfu:Sfum_3451 glycogen branching enzyme~SMART: alpha amylase catalytic sub domain gene gene234 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0235 Amico_0236 Amico_0236 Amico_0236 250834 253227 + glycoside hydrolase family 57 PFAM: glycoside hydrolase family 57~KEGG: sfu:Sfum_2350 glycoside hydrolase family protein gene gene235 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0236 Amico_0237 Amico_0237 Amico_0237 253280 254386 + glutamate 5-kinase TIGRFAM: glutamate 5-kinase~PFAM: aspartate/glutamate/uridylate kinase%3B PUA domain containing protein~KEGG: fph:Fphi_0609 gamma-glutamyl kinase~SMART: PUA domain containing protein gene gene236 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0237 Amico_0238 Amico_0238 Amico_0238 254403 255659 + gamma-glutamyl phosphate reductase KEGG: ppd:Ppro_3508 gamma-glutamyl phosphate reductase~TIGRFAM: gamma-glutamyl phosphate reductase~PFAM: Aldehyde Dehydrogenase gene gene237 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0238 Amico_0239 Amico_0239 Amico_0239 255665 255781 + pseudogene gene238 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0239 Amico_0240 Amico_0240 Amico_0240 255778 256485 - protein of unknown function DUF554 PFAM: protein of unknown function DUF554~KEGG: dvm:DvMF_3049 protein of unknown function DUF554 gene gene239 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0240 Amico_0241 Amico_0241 Amico_0241 256534 257463 - inner-membrane translocator PFAM: inner-membrane translocator~KEGG: dvl:Dvul_1925 inner-membrane translocator gene gene240 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0241 Amico_0242 Amico_0242 Amico_0242 257465 258535 - inner-membrane translocator PFAM: inner-membrane translocator~KEGG: dde:Dde_0138 branched-chain amino acid ABC transporter%2C permease protein gene gene241 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0242 Amico_0243 Amico_0243 Amico_0243 258532 260136 - ABC transporter related protein KEGG: dat:HRM2_06320 RbsA1~PFAM: ABC transporter related~SMART: AAA ATPase gene gene242 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0243 Amico_0244 Amico_0244 Amico_0244 260167 261249 - basic membrane lipoprotein PFAM: basic membrane lipoprotein~KEGG: dps:DP0677 hypothetical protein gene gene243 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0244 Amico_0245 Amico_0245 Amico_0245 261448 261927 + Xanthine phosphoribosyltransferase KEGG: dde:Dde_1506 xanthine-guanine phosphoribosyltransferase~PFAM: phosphoribosyltransferase gene gene244 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0245 Amico_0246 Amico_0246 Amico_0246 261978 262454 + hypothetical protein gene gene245 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0246 Amico_0247 Amico_0247 Amico_0247 262530 263048 - ThiJ/PfpI domain protein PFAM: ThiJ/PfpI domain protein~KEGG: cbc:CbuK_0648 protease I gene gene246 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0247 Amico_0248 Amico_0248 Amico_0248 263160 265097 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: sfu:Sfum_2348 glycosyl transferase%2C group 1 gene gene247 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0248 Amico_0249 Amico_0249 Amico_0249 265152 266693 + Alpha%2Calpha-trehalose-phosphate synthase (UDP- forming) KEGG: sat:SYN_02628 alpha%2Calpha-trehalose-phosphate synthase (UDP-forming)~PFAM: glycosyl transferase family 20%3B glycosyl transferase group 1 gene gene248 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0249 Amico_0250 Amico_0250 Amico_0250 266674 267201 + nitroreductase PFAM: nitroreductase~KEGG: dds:Ddes_1158 nitroreductase gene gene249 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0250 Amico_0251 Amico_0251 Amico_0251 267258 267785 + nitroreductase PFAM: nitroreductase~KEGG: dds:Ddes_1158 nitroreductase gene gene250 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0251 Amico_0252 Amico_0252 Amico_0252 267936 270389 + DNA gyrase%2C A subunit SMART: DNA gyrase/topoisomerase IV subunit A~TIGRFAM: DNA gyrase%2C A subunit~KEGG: nis:NIS_0489 DNA gyrase subunit A~PFAM: DNA gyrase/topoisomerase IV subunit A%3B DNA gyrase repeat beta-propeller gene gene251 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0252 Amico_0253 Amico_0253 Amico_0253 270389 271024 + phosphatidylserine decarboxylase related protein TIGRFAM: phosphatidylserine decarboxylase related protein~KEGG: reu:Reut_A0950 phosphatidylserine decarboxylase~PFAM: phosphatidylserine decarboxylase-related gene gene252 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0253 Amico_0254 Amico_0254 Amico_0254 271005 271739 + CDP-diacylglycerol/serineO-phosphatidyl transferase KEGG: wsu:WS0623 phosphatidyltransferase~TIGRFAM: CDP-diacylglycerol/serine O- phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase gene gene253 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0254 Amico_0255 Amico_0255 Amico_0255 271920 272765 + phosphomethylpyrimidine kinase KEGG: msu:MS0677 phosphomethylpyrimidine kinase~TIGRFAM: phosphomethylpyrimidine kinase~PFAM: Phosphomethylpyrimidine kinase type-1 gene gene254 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0255 Amico_0256 Amico_0256 Amico_0256 272740 273594 + Hydroxyethylthiazole kinase KEGG: hypothetical protein~PFAM: hydroxyethylthiazole kinase gene gene255 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0256 Amico_0257 Amico_0257 Amico_0257 273591 274214 + thiamine-phosphate pyrophosphorylase TIGRFAM: thiamine-phosphate pyrophosphorylase~KEGG: hypothetical protein~PFAM: thiamine monophosphate synthase gene gene256 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0257 Amico_0258 Amico_0258 Amico_0258 274277 274807 - thiW protein KEGG: dal:Dalk_0377 BioY protein~TIGRFAM: thiW protein~PFAM: ThiW family protein gene gene257 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0258 Amico_0259 Amico_0259 Amico_0259 274782 275726 - NMT1/THI5 like domain protein PFAM: NMT1/THI5 like domain protein~KEGG: dat:HRM2_04300 ABC-type transporter%2C substrate-binding protein gene gene258 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0259 Amico_0260 Amico_0260 Amico_0260 275755 276501 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: dat:HRM2_04310 ABC-type transporter%2C permease protein gene gene259 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0260 Amico_0261 Amico_0261 Amico_0261 276498 277235 - ABC transporter related protein KEGG: dat:HRM2_04320 ABC-type transporter%2C ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene260 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0261 Amico_0262 Amico_0262 Amico_0262 277262 277765 - proton-coupled thiamine transporter YuaJ TIGRFAM: proton-coupled thiamine transporter YuaJ~PFAM: thiamine transporter YuaJ gene gene261 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0262 Amico_0263 Amico_0263 Amico_0263 278042 278857 + hypothetical protein gene gene262 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0263 Amico_0264 Amico_0264 Amico_0264 278854 279534 - peptidase A24A prepilin type IV PFAM: peptidase A24A prepilin type IV~KEGG: aha:AHA_3871 prepilin peptidase gene gene263 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0264 Amico_0265 Amico_0265 Amico_0265 279624 280082 + UspA domain protein PFAM: UspA domain protein~KEGG: geo:Geob_3533 UspA domain protein gene gene264 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0265 Amico_0266 Amico_0266 Amico_0266 280349 280750 + methylmalonyl-CoA epimerase KEGG: dol:Dole_0080 glyoxalase/bleomycin resistance protein/dioxygenase~TIGRFAM: methylmalonyl-CoA epimerase~PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase gene gene265 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0266 Amico_0267 Amico_0267 Amico_0267 280766 282325 + carboxyl transferase PFAM: carboxyl transferase~KEGG: dal:Dalk_3780 propionyl-CoA carboxylase gene gene266 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0267 Amico_0268 Amico_0268 Amico_0268 282344 282751 + sodium pump decarboxylase gamma subunit PFAM: sodium pump decarboxylase gamma subunit gene gene267 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0268 Amico_0269 Amico_0269 Amico_0269 282829 283233 + biotin/lipoyl attachment domain-containing protein PFAM: biotin/lipoyl attachment domain-containing protein~KEGG: sfu:Sfum_0461 hypothetical protein gene gene268 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0269 Amico_0270 Amico_0270 Amico_0270 283256 284377 + sodium ion-translocating decarboxylase%2C beta subunit TIGRFAM: sodium ion-translocating decarboxylase%2C beta subunit~KEGG: mca:MCA2479 oxaloacetate decarboxylase%2C beta subunit~PFAM: Na+transporting methylmalonyl- CoA/oxaloacetate decarboxylase beta subunit gene gene269 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0270 Amico_0271 Amico_0271 Amico_0271 284449 284940 + Putative ammonia monooxygenase-like protein KEGG: sdy:SDY_0650 putative transport protein gene gene270 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0271 Amico_0272 Amico_0272 Amico_0272 284965 286068 + sugar fermentation stimulation protein KEGG: sat:SYN_02078 transcriptional regulator~TIGRFAM: sugar fermentation stimulation protein~PFAM: sugar fermentation stimulation protein gene gene271 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0272 Amico_0273 Amico_0273 Amico_0273 286058 286864 - UspA domain protein PFAM: UspA domain protein~KEGG: bbr:BB4537 putative universal stress protein gene gene272 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0273 Amico_0274 Amico_0274 Amico_0274 286976 287863 + lipid A biosynthesis acyltransferase PFAM: lipid A biosynthesis acyltransferase~KEGG: mxa:MXAN_1057 lipid A biosynthesis acyltransferase gene gene273 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0274 Amico_0275 Amico_0275 Amico_0275 287860 288324 + hypothetical protein gene gene274 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0275 Amico_0276 Amico_0276 Amico_0276 288327 289715 + Cl- channel voltage-gated family protein PFAM: Cl- channel voltage-gated family protein~KEGG: gbm:Gbem_0292 chloride channel core protein gene gene275 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0276 Amico_0277 Amico_0277 Amico_0277 289769 291055 - sodium:dicarboxylate symporter PFAM: sodium:dicarboxylate symporter~KEGG: dat:HRM2_45810 proton/sodium-glutamate symport protein gene gene276 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0277 Amico_0278 Amico_0278 Amico_0278 291253 293343 + Patatin PFAM: Patatin~KEGG: lch:Lcho_0391 patatin gene gene277 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0278 Amico_0279 Amico_0279 Amico_0279 293387 294826 + prolyl-tRNA synthetase TIGRFAM: prolyl-tRNA synthetase~KEGG: mxa:MXAN_6655 prolyl-tRNA synthetase~PFAM: Prolyl-tRNA synthetase%2C class II-like%3B tRNA synthetase class II (G H P and S)%3B Anticodon-binding domain protein gene gene278 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0279 Amico_0280 Amico_0280 Amico_0280 294924 295883 + Ppx/GppA phosphatase PFAM: Ppx/GppA phosphatase~KEGG: afw:Anae109_0702 Ppx/GppA phosphatase gene gene279 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0280 Amico_0281 Amico_0281 Amico_0281 295910 297577 + Na+/Picotransporter PFAM: Na+/Picotransporter~KEGG: bav:BAV2385 Na+/Pi-cotransporter gene gene280 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0281 Amico_0282 Amico_0282 Amico_0282 297558 298259 + phosphate uptake regulator%2C PhoU KEGG: mxa:MXAN_4792 phosphate transport system regulatory protein PhoU~TIGRFAM: phosphate transport system regulatory protein PhoU~PFAM: PhoU family protein gene gene281 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0282 Amico_0283 Amico_0283 Amico_0283 298413 298808 + Rhodanese domain protein KEGG: geo:Geob_0482 rhodanese domain protein~PFAM: Rhodanese domain protein~SMART: Rhodanese domain protein gene gene282 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0283 Amico_0284 Amico_0284 Amico_0284 298942 299481 - nitroreductase PFAM: nitroreductase~KEGG: pca:Pcar_0509 nitroreductase gene gene283 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0284 Amico_0285 Amico_0285 Amico_0285 304745 305506 - hypothetical protein gene gene287 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0285 Amico_0286 Amico_0286 Amico_0286 305528 305896 - hypothetical protein KEGG: afe:Lferr_0194 hypothetical protein gene gene288 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0286 Amico_0287 Amico_0287 Amico_0287 306052 307095 + Homoserine dehydrogenase KEGG: acp:A2cp1_4072 homoserine dehydrogenase~PFAM: homoserine dehydrogenase%3B homoserine dehydrogenase NAD-binding gene gene289 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0287 Amico_0288 Amico_0288 Amico_0288 307102 307620 + phosphodiesterase%2C MJ0936 family KEGG: ppr:PBPRA2808 phosphodiesterase~TIGRFAM: phosphodiesterase%2C MJ0936 family~PFAM: metallophosphoesterase gene gene290 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0288 Amico_0289 Amico_0289 Amico_0289 307646 308473 + PHP domain protein KEGG: dal:Dalk_2742 ribonuclease III~PFAM: PHP domain protein~SMART: phosphoesterase PHP domain protein gene gene291 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0289 Amico_0290 Amico_0290 Amico_0290 308537 309577 + Threonine aldolase KEGG: sfu:Sfum_0699 threonine aldolase~PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase gene gene292 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0290 Amico_0291 Amico_0291 Amico_0291 309574 310932 + peptidase U62 modulator of DNA gyrase PFAM: peptidase U62 modulator of DNA gyrase~KEGG: gur:Gura_1709 peptidase U62%2C modulator of DNA gyrase gene gene293 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0291 Amico_0292 Amico_0292 Amico_0292 310910 312592 + N-acetylmuramoyl-L-alanine amidase PFAM: cell wall hydrolase/autolysin~KEGG: ppg:PputGB1_4949 N-acetylmuramoyl-L-alanine amidase~SMART: cell wall hydrolase/autolysin gene gene294 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0292 Amico_0293 Amico_0293 Amico_0293 312613 313365 + hypothetical protein gene gene295 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0293 Amico_0294 Amico_0294 Amico_0294 313384 314166 + ribonuclease PH TIGRFAM: ribonuclease PH~KEGG: ppd:Ppro_2311 ribonuclease PH~PFAM: 3' exoribonuclease%3B Exoribonuclease%2C phosphorolytic domain 2 gene gene296 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0294 Amico_0295 Amico_0295 Amico_0295 314129 314719 + non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family KEGG: fph:Fphi_1207 HAM1 protein~TIGRFAM: non-canonical purine NTP pyrophosphatase%2C rdgB/HAM1 family~PFAM: Ham1 family protein gene gene297 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0295 Amico_0296 Amico_0296 Amico_0296 314783 315007 + preprotein translocase%2C SecG subunit TIGRFAM: preprotein translocase%2C SecG subunit~PFAM: Preprotein translocase SecG subunit~KEGG: aci:ACIAD0364 preprotein translocase subunit SecG gene gene298 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0296 Amico_0297 Amico_0297 Amico_0297 315020 316063 + Quinolinate phosphoribosyl transferase PFAM: Quinolinate phosphoribosyl transferase~KEGG: dma:DMR_20580 hypothetical protein gene gene299 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0297 Amico_0298 Amico_0298 Amico_0298 316223 316654 + ribosomal protein L13 KEGG: esa:ESA_03617 50S ribosomal protein L13~TIGRFAM: ribosomal protein L13~PFAM: ribosomal protein L13 gene gene300 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0298 Amico_0299 Amico_0299 Amico_0299 316676 317071 + ribosomal protein S9 PFAM: ribosomal protein S9~KEGG: ank:AnaeK_3453 ribosomal protein S9 gene gene301 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0299 Amico_0300 Amico_0300 Amico_0300 317340 318692 + magnesium transporter TIGRFAM: magnesium transporter~PFAM: MgtE integral membrane region%3B MgtE intracellular region%3B CBS domain containing protein~KEGG: aeh:Mlg_0824 magnesium transporter~SMART: CBS domain containing protein gene gene302 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0300 Amico_0301 Amico_0301 Amico_0301 318811 319419 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: kpu:KP1_1321 acrAB operon repressor gene gene303 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0301 Amico_0302 Amico_0302 Amico_0302 319409 320740 + outer membrane efflux protein PFAM: outer membrane efflux protein~KEGG: sat:SYN_02462 type I secretion outer membrane protein gene gene304 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0302 Amico_0303 Amico_0303 Amico_0303 320759 321850 + efflux transporter%2C RND family%2C MFP subunit KEGG: mms:mma_0021 membrane fusion protein~TIGRFAM: efflux transporter%2C RND family%2C MFP subunit~PFAM: secretion protein HlyD family protein gene gene305 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0303 Amico_0304 Amico_0304 Amico_0304 321847 324951 + acriflavin resistance protein PFAM: acriflavin resistance protein~KEGG: dde:Dde_0965 AcrB/AcrD/AcrF family protein gene gene306 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0304 Amico_0305 Amico_0305 Amico_0305 324957 325256 + hypothetical protein gene gene307 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0305 Amico_0306 Amico_0306 Amico_0306 326239 326442 - pseudogene gene311 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0306 Amico_0307 Amico_0307 Amico_0307 326585 326974 + hypothetical protein KEGG: sat:SYN_01915 putative cytoplasmic protein gene gene312 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0307 Amico_0308 Amico_0308 Amico_0308 327008 328441 - transcriptional regulator%2C LuxR family PFAM: regulatory protein LuxR~SMART: regulatory protein LuxR~KEGG: dvm:DvMF_1023 transcriptional regulator%2C LuxR family gene gene313 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0308 Amico_0309 Amico_0309 Amico_0309 328586 329020 + hypothetical protein gene gene314 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0309 Amico_0310 Amico_0310 Amico_0310 329037 330302 + hypothetical protein KEGG: bra:BRADO3379 PE-PGRS family protein (fragment) gene gene315 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0310 Amico_0311 Amico_0311 Amico_0311 330583 331785 + translation elongation factor Tu KEGG: ade:Adeh_1947 elongation factor Tu~TIGRFAM: translation elongation factor Tu%3B small GTP-binding protein~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain protein%3B elongation factor Tu domain 2 protein gene gene316 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0311 Amico_0312 Amico_0312 Amico_0312 331806 331955 + ribosomal protein L33 KEGG: gem:GM21_3342 ribosomal protein L33~TIGRFAM: ribosomal protein L33~PFAM: ribosomal protein L33 gene gene317 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0312 Amico_0313 Amico_0313 Amico_0313 332085 332267 + preprotein translocase%2C SecE subunit TIGRFAM: preprotein translocase%2C SecE subunit~PFAM: protein secE/sec61-gamma protein~KEGG: dvl:Dvul_0445 preprotein translocase subunit SecE gene gene319 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0313 Amico_0314 Amico_0314 Amico_0314 332348 332893 + NusG antitermination factor TIGRFAM: transcription termination/antitermination factor NusG~PFAM: NGN domain protein%3B KOW domain protein~KEGG: pca:Pcar_0689 transcription termination/antitermination factor NusG~SMART: NGN domain protein%3B KOW domain protein gene gene320 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0314 Amico_0315 Amico_0315 Amico_0315 332980 333405 + ribosomal protein L11 TIGRFAM: ribosomal protein L11~PFAM: ribosomal protein L11~KEGG: dma:DMR_31200 50S ribosomal protein L11~SMART: ribosomal protein L11 gene gene321 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0315 Amico_0316 Amico_0316 Amico_0316 333480 334190 + ribosomal protein L1 KEGG: gme:Gmet_0616 50S ribosomal protein L1~TIGRFAM: ribosomal protein L1~PFAM: ribosomal protein L1 gene gene322 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0316 Amico_0317 Amico_0317 Amico_0317 334381 334911 + ribosomal protein L10 PFAM: ribosomal protein L10~KEGG: glo:Glov_1337 50S ribosomal protein L10 gene gene323 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0317 Amico_0318 Amico_0318 Amico_0318 334985 335365 + ribosomal protein L7/L12 KEGG: bte:BTH_I3077 50S ribosomal protein L7/L12~TIGRFAM: ribosomal protein L7/L12~PFAM: Ribosomal protein L7/L12 gene gene324 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0318 Amico_0319 Amico_0319 Amico_0319 335441 336130 + Deoxyribonuclease V KEGG: pca:Pcar_0602 endonuclease V (deoxyinosine 3'endoduclease)~PFAM: Endonuclease V gene gene325 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0319 Amico_0320 Amico_0320 Amico_0320 336127 336969 + amidohydrolase 2 PFAM: amidohydrolase 2~KEGG: dat:HRM2_10900 putative metal-dependent hydrolase gene gene326 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0320 Amico_0321 Amico_0321 Amico_0321 337908 338102 - Protein of unknown function DUF2196 PFAM: Protein of unknown function DUF2196~KEGG: ppr:PBPRB1930 hypothetical protein gene gene333 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0321 Amico_0322 Amico_0322 Amico_0322 338269 338869 + pseudogene gene334 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0322 Amico_0323 Amico_0323 Amico_0323 338866 341454 + protein of unknown function DUF470 PFAM: protein of unknown function DUF470%3B protein of unknown function DUF472%3B protein of unknown function DUF471~KEGG: ade:Adeh_2257 hypothetical protein gene gene335 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0323 Amico_0324 Amico_0324 Amico_0324 341470 341820 - hypothetical protein gene gene336 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0324 Amico_0325 Amico_0325 Amico_0325 341817 343091 - protein of unknown function DUF1576 PFAM: protein of unknown function DUF1576 gene gene337 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0325 Amico_0326 Amico_0326 Amico_0326 343084 344394 - Radical SAM domain protein KEGG: sat:SYN_02176 Fe-S oxidoreductase~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB gene gene338 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0326 Amico_0327 Amico_0327 Amico_0327 344461 345366 + RarD protein%2C DMT superfamily transporter KEGG: dat:HRM2_08160 RarD~TIGRFAM: RarD protein%2C DMT superfamily transporter~PFAM: protein of unknown function DUF6 transmembrane gene gene339 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0327 Amico_0328 Amico_0328 Amico_0328 345438 345896 + hypothetical protein gene gene340 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0328 Amico_0329 Amico_0329 Amico_0329 345893 346978 - A/G-specific adenine glycosylase TIGRFAM: A/G-specific adenine glycosylase~PFAM: HhH-GPD family protein%3B iron-sulfur cluster loop~KEGG: dds:Ddes_0064 A/G-specific adenine glycosylase~SMART: HhH-GPD family protein%3B iron-sulfur cluster loop gene gene341 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0329 Amico_0330 Amico_0330 Amico_0330 346956 347108 - hypothetical protein gene gene342 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0330 Amico_0331 Amico_0331 Amico_0331 347184 347852 + protein-L-isoaspartate O-methyltransferase TIGRFAM: protein-L-isoaspartate O- methyltransferase~KEGG: gme:Gmet_1420 protein-L-isoaspartate(D- aspartate) O-methyltransferase~PFAM: protein-L-isoaspartate(D-aspartate) O- methyltransferase gene gene343 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0331 Amico_0332 Amico_0332 Amico_0332 347852 348217 + protein of unknown function DUF369 PFAM: protein of unknown function DUF369~KEGG: sfu:Sfum_3204 hypothetical protein gene gene344 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0332 Amico_0333 Amico_0333 Amico_0333 348280 350112 - TonB-dependent receptor PFAM: TonB-dependent receptor%3B TonB-dependent receptor plug~KEGG: pca:Pcar_2970 TonB-dependent receptor protein gene gene345 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0333 Amico_0334 Amico_0334 Amico_0334 350509 351648 + periplasmic binding protein PFAM: periplasmic binding protein~KEGG: unknown periplasmic-binding protein of ABC transporter gene gene346 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0334 Amico_0335 Amico_0335 Amico_0335 351645 352649 + transport system permease protein PFAM: transport system permease protein~KEGG: ppd:Ppro_1257 transport system permease protein gene gene347 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0335 Amico_0336 Amico_0336 Amico_0336 352646 353677 + ABC transporter related protein KEGG: ppd:Ppro_1258 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene348 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0336 Amico_0337 Amico_0337 Amico_0337 353681 354433 - TonB family protein TIGRFAM: TonB family protein~KEGG: vfm:VFMJ11_1305 TonB protein gene gene349 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0337 Amico_0338 Amico_0338 Amico_0338 354437 354826 - Biopolymer transport protein ExbD/TolR PFAM: Biopolymer transport protein ExbD/TolR~KEGG: lip:LI0694 biopolymer transport protein gene gene350 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0338 Amico_0339 Amico_0339 Amico_0339 354829 355458 - MotA/TolQ/ExbB proton channel PFAM: MotA/TolQ/ExbB proton channel~KEGG: pca:Pcar_1505 MotA/TolQ/ExbB proton channel family protein gene gene351 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0339 Amico_0340 Amico_0340 Amico_0340 355683 357089 + sodium:neurotransmitter symporter PFAM: sodium:neurotransmitter symporter~KEGG: dde:Dde_2371 sodium-dependent symporter family protein gene gene352 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0340 Amico_0341 Amico_0341 Amico_0341 357135 357986 - spermidine synthase KEGG: hypothetical protein%3B K00797 spermidine synthase~TIGRFAM: spermidine synthase~PFAM: Spermine synthase gene gene353 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0341 Amico_0342 Amico_0342 Amico_0342 358016 359203 - Orn/DAP/Arg decarboxylase 2 PFAM: Orn/DAP/Arg decarboxylase 2~KEGG: psa:PST_0994 ornithine decarboxylase gene gene354 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0342 Amico_0343 Amico_0343 Amico_0343 359405 360370 + beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: geo:Geob_1169 beta-lactamase domain protein gene gene355 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0343 Amico_0344 Amico_0344 Amico_0344 360474 361463 + Glucokinase KEGG: dde:Dde_1461 glucokinase~PFAM: Glucokinase gene gene356 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0344 Amico_0345 Amico_0345 Amico_0345 361403 362200 - hypothetical protein gene gene357 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0345 Amico_0346 Amico_0346 Amico_0346 362252 362836 - Methyltransferase type 11 PFAM: Methyltransferase type 11%3B Methyltransferase type 12~KEGG: pay:PAU_03884 ubiquinone/menaquinone biosynthesis methyltransferase gene gene358 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0346 Amico_0347 Amico_0347 Amico_0347 362833 364806 - ABC transporter related protein KEGG: sat:SYN_00466 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene359 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0347 Amico_0348 Amico_0348 Amico_0348 364916 366244 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1%3B General substrate transporter~KEGG: tgr:Tgr7_0101 major facilitator transporter gene gene360 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0348 Amico_0349 Amico_0349 Amico_0349 366391 366591 + cold-shock DNA-binding domain protein KEGG: dal:Dalk_0501 cold-shock DNA-binding domain protein~PFAM: Cold-shock protein DNA-binding~SMART: Cold shock protein gene gene361 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0349 Amico_0350 Amico_0350 Amico_0350 366658 368325 - DEAD/DEAH box helicase domain protein KEGG: atc:AGR_L_1362 inducible ATP-independent RNA helicase~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein~SMART: DEAD-like helicase %3B helicase domain protein gene gene362 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0350 Amico_0351 Amico_0351 Amico_0351 368675 369748 + efflux transporter%2C RND family%2C MFP subunit TIGRFAM: efflux transporter%2C RND family%2C MFP subunit~KEGG: shl:Shal_2495 RND family efflux transporter MFP subunit gene gene363 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0351 Amico_0352 Amico_0352 Amico_0352 369758 372811 + acriflavin resistance protein PFAM: acriflavin resistance protein~KEGG: gme:Gmet_2518 acriflavin resistance protein gene gene364 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0352 Amico_0353 Amico_0353 Amico_0353 372938 373603 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase catalytic~KEGG: pne:Pnec_0365 lytic transglycosylase catalytic gene gene365 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0353 Amico_0354 Amico_0354 Amico_0354 373624 374508 + protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane~KEGG: dvl:Dvul_2528 hypothetical protein gene gene366 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0354 Amico_0355 Amico_0355 Amico_0355 374490 375692 - transcriptional regulator%2C CdaR PFAM: sugar diacid recognition domain protein~KEGG: tau:Tola_2578 transcriptional regulator%2C CdaR gene gene367 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0355 Amico_0356 Amico_0356 Amico_0356 375878 376024 + hypothetical protein gene gene368 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0356 Amico_0357 Amico_0357 Amico_0357 376160 377530 + hypothetical protein KEGG: hypothetical protein gene gene369 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0357 Amico_0358 Amico_0358 Amico_0358 377665 379275 + ABC transporter related protein KEGG: pay:PAU_00052 ribose transport atp-binding protein RbsA~PFAM: ABC transporter related~SMART: AAA ATPase gene gene370 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0358 Amico_0359 Amico_0359 Amico_0359 379272 380318 + inner-membrane translocator PFAM: inner-membrane translocator~KEGG: dda:Dd703_0982 inner-membrane translocator gene gene371 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0359 Amico_0360 Amico_0360 Amico_0360 380315 381421 + inner-membrane translocator PFAM: inner-membrane translocator~KEGG: atc:AGR_L_3222 ribose ABC transporter%2C permease protein gene gene372 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0360 Amico_0361 Amico_0361 Amico_0361 381447 381827 + hypothetical protein KEGG: BGAL10%3B BGAL10 (beta-galactosidase 10)%3B beta- galactosidase gene gene373 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0361 Amico_0362 Amico_0362 Amico_0362 381882 382481 - nitroreductase PFAM: nitroreductase~KEGG: mfa:Mfla_1829 nitroreductase gene gene374 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0362 Amico_0363 Amico_0363 Amico_0363 382506 383873 - tRNA modification GTPase TrmE KEGG: sat:SYN_01016 tRNA synthase~TIGRFAM: tRNA modification GTPase TrmE%3B small GTP- binding protein~PFAM: GTP-binding protein TrmE-like%3B GTP-binding protein HSR1-related%3B Miro domain protein gene gene375 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0363 Amico_0364 Amico_0364 Amico_0364 384085 385308 - putative transcriptional regulator%2C GntR family PFAM: aminotransferase class I and II~KEGG: mxa:MXAN_0212 aminotransferase%2C class I and II family protein gene gene376 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0364 Amico_0365 Amico_0365 Amico_0365 385495 386124 - peptidase M48 Ste24p PFAM: peptidase M48 Ste24p~KEGG: ypg:YpAngola_A3351 M48 family peptidase gene gene377 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0365 Amico_0366 Amico_0366 Amico_0366 386356 388323 + Lytic transglycosylase catalytic PFAM: Lytic transglycosylase catalytic~KEGG: gbm:Gbem_2602 lytic transglycosylase catalytic protein gene gene378 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0366 Amico_0367 Amico_0367 Amico_0367 388378 390498 - AAA family ATPase%2C CDC48 subfamily SMART: AAA ATPase~TIGRFAM: AAA family ATPase%2C CDC48 subfamily~KEGG: gur:Gura_2842 AAA family ATPase%2C CDC48 subfamily protein~PFAM: AAA ATPase central domain protein%3B cell division protein 48 CDC48 domain 2%3B ATPase associated with various cellular activities AAA_5%3B AAA ATPase VAT domain protein gene gene379 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0367 Amico_0368 Amico_0368 Amico_0368 390618 391829 - aminotransferase class I and II PFAM: aminotransferase class I and II~KEGG: ftm:FTM_0473 aspartate aminotransferase gene gene380 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0368 Amico_0369 Amico_0369 Amico_0369 391983 393194 + phosphonopyruvate decarboxylase-related protein TIGRFAM: phosphonopyruvate decarboxylase-related protein~KEGG: sat:SYN_02641 cofactor-independent phosphoglycerate mutase~PFAM: 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase%3B metalloenzyme domain protein gene gene381 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0369 Amico_0370 Amico_0370 Amico_0370 393219 394313 + metal dependent phosphohydrolase TIGRFAM: metal dependent phophohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain~KEGG: glo:Glov_0049 metal dependent phosphohydrolase~SMART: metal-dependent phosphohydrolase HD region gene gene382 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0370 Amico_0371 Amico_0371 Amico_0371 394314 395258 + pseudouridine synthase%2C RluA family KEGG: reu:Reut_A2274 ribosomal large subunit pseudouridine synthase C~TIGRFAM: pseudouridine synthase%2C RluA family~PFAM: pseudouridine synthase%3B RNA-binding S4 domain protein gene gene383 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0371 Amico_0372 Amico_0372 Amico_0372 395292 395390 + hypothetical protein gene gene384 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0372 Amico_0373 Amico_0373 Amico_0373 395412 395615 + hypothetical protein gene gene385 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0373 Amico_0374 Amico_0374 Amico_0374 395886 397166 + Glu/Leu/Phe/Val dehydrogenase PFAM: Glu/Leu/Phe/Val dehydrogenase %3B Glu/Leu/Phe/Val dehydrogenase dimerisation region~KEGG: nme:NMB1476 glutamate dehydrogenase%2C NAD- specific gene gene386 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0374 Amico_0375 Amico_0375 Amico_0375 397310 398614 - asparaginyl-tRNA synthetase KEGG: afw:Anae109_2720 asparaginyl-tRNA synthetase~TIGRFAM: asparaginyl-tRNA synthetase~PFAM: tRNA synthetase class II (D K and N)%3B nucleic acid binding OB-fold tRNA/helicase-type gene gene387 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0375 Amico_0376 Amico_0376 Amico_0376 398899 400380 + AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: vsa:VSAL_I2699 AMP-binding enzyme%2C putative long chain fatty acid Co-A ligase%2C acetyl-CoA synthetase gene gene388 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0376 Amico_0377 Amico_0377 Amico_0377 400385 401428 + PfkB domain protein PFAM: PfkB domain protein~KEGG: gsu:GSU2085 ADP-heptose synthase gene gene389 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0377 Amico_0378 Amico_0378 Amico_0378 401385 402233 - Haloacid dehalogenase domain protein hydrolase PFAM: Haloacid dehalogenase domain protein hydrolase gene gene390 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0378 Amico_0379 Amico_0379 Amico_0379 402327 403334 + hypothetical protein gene gene391 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0379 Amico_0380 Amico_0380 Amico_0380 403431 404825 + transcriptional regulator%2C GntR family with aminotransferase domain KEGG: bxe:Bxe_B2934 GntR family transcriptional regulator~PFAM: regulatory protein GntR HTH%3B aminotransferase class I and II~SMART: regulatory protein GntR HTH gene gene392 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0380 Amico_0381 Amico_0381 Amico_0381 404835 405026 - hypothetical protein gene gene393 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0381 Amico_0382 Amico_0382 Amico_0382 405227 405886 + transcriptional regulator%2C GntR family KEGG: ara:Arad_8835 transcriptional regulator (activator) protein~PFAM: GntR domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene394 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0382 Amico_0383 Amico_0383 Amico_0383 406066 407205 + DegT/DnrJ/EryC1/StrS aminotransferase PFAM: DegT/DnrJ/EryC1/StrS aminotransferase%3B aromatic amino acid beta-eliminating lyase/threonine aldolase%3B aminotransferase class V~KEGG: dol:Dole_1884 DegT/DnrJ/EryC1/StrS aminotransferase gene gene395 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0383 Amico_0384 Amico_0384 Amico_0384 407312 408007 + peptidase membrane zinc metallopeptidase putative PFAM: peptidase membrane zinc metallopeptidase putative~KEGG: tgr:Tgr7_3069 peptidase%2C membrane zinc metallopeptidase%2C putative gene gene396 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0384 Amico_0385 Amico_0385 Amico_0385 408102 408797 + hypothetical protein gene gene397 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0385 Amico_0386 Amico_0386 Amico_0386 408794 410122 + Fmu (Sun) domain protein PFAM: Fmu (Sun) domain protein~KEGG: dal:Dalk_0554 sun protein gene gene398 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0386 Amico_0387 Amico_0387 Amico_0387 410127 411296 + PASTA domain containing protein KEGG: dal:Dalk_0555 PASTA domain containing protein~PFAM: PASTA domain containing protein~SMART: PASTA domain containing protein gene gene399 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0387 Amico_0388 Amico_0388 Amico_0388 411275 412006 + ribulose-phosphate 3-epimerase TIGRFAM: ribulose-phosphate 3-epimerase~KEGG: dal:Dalk_0556 ribulose-phosphate 3-epimerase~PFAM: ribulose-phosphate 3-epimerase gene gene400 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0388 Amico_0389 Amico_0389 Amico_0389 411975 412859 + conserved hypothetical protein KEGG: dds:Ddes_0913 hypothetical protein gene gene401 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0389 Amico_0390 Amico_0390 Amico_0390 412859 414148 + MiaB-like tRNA modifying enzyme YliG TIGRFAM: MiaB-like tRNA modifying enzyme YliG%3B RNA modification enzyme%2C MiaB family~PFAM: Protein of unknown function UPF0004 %3B Radical SAM domain protein~KEGG: gsu:GSU3205 MiaB-like tRNA modifying enzyme YliG~SMART: Elongator protein 3/MiaB/NifB gene gene402 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0390 Amico_0391 Amico_0391 Amico_0391 414145 414612 + phosphatidylglycerophosphatase A PFAM: phosphatidylglycerophosphatase A~KEGG: dol:Dole_1265 phosphatidylglycerophosphatase A gene gene403 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0391 Amico_0392 Amico_0392 Amico_0392 414619 415848 + competence/damage-inducible protein CinA KEGG: gbm:Gbem_3628 competence/damage-inducible protein CinA~TIGRFAM: competence/damage-inducible protein CinA~PFAM: CinA domain protein%3B molybdopterin binding domain gene gene404 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0392 Amico_0393 Amico_0393 Amico_0393 415833 416405 + 2'-5' RNA ligase KEGG: sfu:Sfum_2529 2'-5' RNA ligase~TIGRFAM: 2'-5' RNA ligase~PFAM: Phosphoesterase HXTX gene gene405 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0393 Amico_0394 Amico_0394 Amico_0394 416470 417582 + recA protein TIGRFAM: recA protein~PFAM: RecA domain protein~KEGG: aeh:Mlg_1483 recombinase A~SMART: AAA ATPase gene gene406 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0394 Amico_0395 Amico_0395 Amico_0395 422850 423638 - Silent information regulator protein Sir2 PFAM: Silent information regulator protein Sir2~KEGG: pca:Pcar_0631 Sir2 family NAD-dependent protein deacetylase gene gene410 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0395 Amico_0396 Amico_0396 Amico_0396 423758 425128 + Xanthine/uracil/vitamin C permease PFAM: Xanthine/uracil/vitamin C permease~KEGG: similar to predicted protein gene gene411 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0396 Amico_0397 Amico_0397 Amico_0397 425457 426737 + efflux transporter%2C RND family%2C MFP subunit KEGG: dde:Dde_0671 secretion protein HlyD~TIGRFAM: efflux transporter%2C RND family%2C MFP subunit~PFAM: secretion protein HlyD family protein gene gene412 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0397 Amico_0398 Amico_0398 Amico_0398 426747 429791 + acriflavin resistance protein PFAM: acriflavin resistance protein~KEGG: vsp:VS_1986 cation/multidrug efflux pump gene gene413 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0398 Amico_0399 Amico_0399 Amico_0399 429975 430340 + desulfoferrodoxin KEGG: sfu:Sfum_3891 desulfoferrodoxin~TIGRFAM: desulfoferrodoxin~PFAM: Desulfoferrodoxin ferrous iron-binding region%3B Desulfoferrodoxin Dfx domain protein gene gene414 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0399 Amico_0400 Amico_0400 Amico_0400 430344 430862 + Ferroxidase KEGG: dma:DMR_17620 ferritin~PFAM: Ferritin Dps family protein gene gene415 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0400 Amico_0401 Amico_0401 Amico_0401 430960 431484 + flavin reductase domain protein FMN-binding protein PFAM: flavin reductase domain protein FMN-binding~KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin gene gene416 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0401 Amico_0402 Amico_0402 Amico_0402 431526 432734 + beta-lactamase domain protein PFAM: beta-lactamase domain protein%3B flavodoxin/nitric oxide synthase~KEGG: sfu:Sfum_3253 flavodoxin/nitric oxide synthase gene gene417 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0402 Amico_0403 Amico_0403 Amico_0403 432715 433584 + conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: sfu:Sfum_0347 hypothetical protein gene gene418 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0403 Amico_0404 Amico_0404 Amico_0404 433565 434430 - pseudogene gene419 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0404 Amico_0405 Amico_0405 Amico_0405 434455 435741 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: dal:Dalk_1952 major facilitator superfamily MFS_1 gene gene420 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0405 Amico_0406 Amico_0406 Amico_0406 435870 436376 + CMP/dCMP deaminase zinc-binding protein PFAM: CMP/dCMP deaminase zinc-binding~KEGG: gur:Gura_2185 dCMP deaminase gene gene421 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0406 Amico_0407 Amico_0407 Amico_0407 436399 436974 + metal dependent phosphohydrolase TIGRFAM: metal dependent phophohydrolase~KEGG: gbm:Gbem_0692 metal dependent phophohydrolase gene gene422 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0407 Amico_0408 Amico_0408 Amico_0408 437066 437701 + two component transcriptional regulator%2C LuxR family KEGG: scl:sce5431 two-component system response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR%3B Bacterio-opsin activator HTH domain protein~SMART: response regulator receiver%3B regulatory protein LuxR gene gene423 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0408 Amico_0409 Amico_0409 Amico_0409 437698 439110 + integral membrane sensor signal transduction histidine kinase KEGG: pfs:PFLU2939 putative two-component system sensor kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase dimerisation and phosphoacceptor region%3B histidine kinase HAMP region domain protein gene gene424 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0409 Amico_0410 Amico_0410 Amico_0410 439107 440717 + beta-lactamase domain protein PFAM: beta-lactamase domain protein%3B RNA- metabolising metallo-beta-lactamase~KEGG: dal:Dalk_2789 RNA-metabolising metallo-beta- lactamase gene gene425 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0410 Amico_0411 Amico_0411 Amico_0411 440801 442282 + hypothetical protein gene gene426 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0411 Amico_0412 Amico_0412 Amico_0412 442321 443604 + tyrosyl-tRNA synthetase TIGRFAM: tyrosyl-tRNA synthetase~KEGG: acp:A2cp1_1171 tyrosyl-tRNA synthetase~PFAM: aminoacyl-tRNA synthetase class Ib%3B RNA- binding S4 domain protein gene gene427 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0412 Amico_0413 Amico_0413 Amico_0413 443667 444608 + lipid A biosynthesis acyltransferase PFAM: lipid A biosynthesis acyltransferase~KEGG: acp:A2cp1_2793 lipid A biosynthesis acyltransferase gene gene428 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0413 Amico_0414 Amico_0414 Amico_0414 444658 445578 + hypothetical protein gene gene429 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0414 Amico_0415 Amico_0415 Amico_0415 445621 446274 - polar amino acid ABC transporter%2C inner membrane subunit KEGG: reh:H16_A0046 ABC transporter permease~TIGRFAM: polar amino acid ABC transporter%2C inner membrane subunit~PFAM: binding-protein-dependent transport systems inner membrane component gene gene430 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0415 Amico_0416 Amico_0416 Amico_0416 446276 447052 - ABC transporter related protein KEGG: dvu:DVU0105 glutamine ABC transporter%2C ATP- binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene431 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0416 Amico_0417 Amico_0417 Amico_0417 447257 447388 - hypothetical protein gene gene432 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0417 Amico_0418 Amico_0418 Amico_0418 447530 448417 + beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: gsu:GSU1210 metallo-beta-lactamase family protein gene gene433 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0418 Amico_0419 Amico_0419 Amico_0419 448452 449837 - Phosphomannomutase KEGG: afw:Anae109_0166 phosphomannomutase~PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III%3B phosphoglucomutase/phosphomannomutase gene gene434 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0419 Amico_0420 Amico_0420 Amico_0420 449949 450878 + Auxin Efflux Carrier PFAM: Auxin Efflux Carrier~KEGG: rlt:Rleg2_4086 auxin efflux carrier gene gene435 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0420 Amico_0421 Amico_0421 Amico_0421 450888 452084 - YibE/F family protein PFAM: YibE/F family protein~KEGG: sse:Ssed_2695 hypothetical protein gene gene436 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0421 Amico_0422 Amico_0422 Amico_0422 452062 452802 - GntR domain protein KEGG: gem:GM21_1321 regulatory protein GntR HTH~PFAM: GntR domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene437 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0422 Amico_0423 Amico_0423 Amico_0423 452924 454567 + phosphoribulokinase/uridine kinase KEGG: afw:Anae109_3852 cyclic nucleotide-binding protein~PFAM: phosphoribulokinase/uridine kinase~SMART: AAA ATPase gene gene438 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0423 Amico_0424 Amico_0424 Amico_0424 454604 455437 + transcriptional regulator%2C LacI family KEGG: xcv:XCV4373 LacI family transcription regulator~PFAM: regulatory protein LacI~SMART: regulatory protein LacI gene gene439 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0424 Amico_0425 Amico_0425 Amico_0425 455440 455577 - pseudogene gene440 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0425 Amico_0426 Amico_0426 Amico_0426 455703 456539 + ATPase-like%2C ParA/MinD PFAM: ATPase-like%2C ParA/MinD~KEGG: bov:BOV_0057 mrp-related protein gene gene441 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0426 Amico_0427 Amico_0427 Amico_0427 456596 457408 - beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: ppd:Ppro_1945 beta-lactamase domain- containing protein gene gene442 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0427 Amico_0428 Amico_0428 Amico_0428 457435 458937 - hypothetical protein KEGG: geo:Geob_3717 hypothetical protein gene gene443 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0428 Amico_0429 Amico_0429 Amico_0429 459050 460141 + GTP-binding protein YchF KEGG: csa:Csal_1521 GTP-dependent nucleic acid- binding protein EngD~TIGRFAM: GTP-binding protein YchF~PFAM: Protein of unknown function DUF933%3B GTP- binding protein HSR1-related gene gene444 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0429 Amico_0430 Amico_0430 Amico_0430 460213 460653 + hypothetical protein KEGG: protein serine/threonine kinase gene gene445 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0430 Amico_0431 Amico_0431 Amico_0431 460715 461431 - protein of unknown function DUF500 PFAM: protein of unknown function DUF500~KEGG: gur:Gura_1635 hypothetical protein gene gene446 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0431 Amico_0432 Amico_0432 Amico_0432 461572 462504 + hypothetical protein KEGG: pca:Pcar_1474 hypothetical protein gene gene447 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0432 Amico_0433 Amico_0433 Amico_0433 462525 463082 + histidine kinase KEGG: dat:HRM2_16530 sensory signal transduction histidine kinase (ATPase domain protein)~PFAM: ATP-binding region ATPase domain protein~SMART: ATP-binding region ATPase domain protein gene gene448 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0433 Amico_0434 Amico_0434 Amico_0434 463110 463925 + formate/nitrite transporter PFAM: formate/nitrite transporter~KEGG: dol:Dole_0884 response regulator receiver protein gene gene449 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0434 Amico_0435 Amico_0435 Amico_0435 464246 465223 + HAD-superfamily hydrolase%2C subfamily IA%2C variant 3 KEGG: hch:HCH_03852 phosphatase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~PFAM: Haloacid dehalogenase domain protein hydrolase gene gene451 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0435 Amico_0436 Amico_0436 Amico_0436 465220 466494 + AAA ATPase central domain protein KEGG: gur:Gura_1704 recombination factor protein RarA~PFAM: AAA ATPase central domain protein%3B ATPase associated with various cellular activities AAA_5~SMART: AAA ATPase gene gene452 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0436 Amico_0437 Amico_0437 Amico_0437 466537 467229 - transcriptional regulator%2C GntR family KEGG: gme:Gmet_0062 GntR family transcriptional regulator~PFAM: regulatory protein GntR HTH%3B GntR domain protein~SMART: regulatory protein GntR HTH gene gene453 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0437 Amico_0438 Amico_0438 Amico_0438 467322 467855 - ATP/cobalamin adenosyltransferase KEGG: lch:Lcho_0942 ATP--cobalamin adenosyltransferase~TIGRFAM: ATP/cobalamin adenosyltransferase~PFAM: cobalamin adenosyltransferase gene gene454 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0438 Amico_0439 Amico_0439 Amico_0439 467913 468716 - transcriptional regulator%2C IclR family KEGG: avi:Avi_7080 transcriptional regulator~PFAM: regulatory protein IclR%3B Transcriptional regulator IclR~SMART: regulatory protein IclR gene gene455 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0439 Amico_0440 Amico_0440 Amico_0440 469036 469923 + 2%2C3-dimethylmalate lyase KEGG: bxe:Bxe_C0659 2%2C3-dimethylmalate lyase gene gene456 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0440 Amico_0441 Amico_0441 Amico_0441 469939 470637 + Dimethylmenaquinone methyltransferase PFAM: Dimethylmenaquinone methyltransferase~KEGG: kpe:KPK_0254 alkaline protease family protein gene gene457 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0441 Amico_0442 Amico_0442 Amico_0442 470653 471549 + Phosphogluconate dehydrogenase%2C NAD-binding%2C putative-like protein PFAM: Phosphogluconate dehydrogenase%2C NAD-binding%2C putative-like%3B 6-phosphogluconate dehydrogenase NAD- binding~KEGG: bja:blr2279 hypothetical protein gene gene458 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0442 Amico_0443 Amico_0443 Amico_0443 471614 472564 + TRAP transporter solute receptor%2C TAXI family TIGRFAM: TRAP transporter solute receptor%2C TAXI family~KEGG: wsu:WS0748 immunogenic protein gene gene459 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0443 Amico_0444 Amico_0444 Amico_0444 472650 474590 + TRAP transporter%2C 4TM/12TM fusion protein KEGG: sfu:Sfum_3721 TRAP transporter%2C 4TM/12TM fusion protein~TIGRFAM: TRAP transporter%2C 4TM/12TM fusion protein~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene460 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0444 Amico_0445 Amico_0445 Amico_0445 474654 474920 + citrate lyase subunit gamma KEGG: hiq:CGSHiGG_02605 citrate lyase subunit gamma gene gene461 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0445 Amico_0446 Amico_0446 Amico_0446 474928 475815 + Citrate (pro-3S)-lyase KEGG: ppd:Ppro_1085 citryl-CoA lyase~PFAM: HpcH/HpaI aldolase gene gene462 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0446 Amico_0447 Amico_0447 Amico_0447 475812 477377 + citrate lyase%2C alpha subunit TIGRFAM: citrate lyase%2C alpha subunit~KEGG: ppd:Ppro_1084 citrate lyase%2C alpha subunit~PFAM: Citrate lyase alpha subunit gene gene463 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0447 Amico_0448 Amico_0448 Amico_0448 477936 479453 + restriction modification system DNA specificity domain protein PFAM: restriction modification system DNA specificity domain~KEGG: bcs:BCAN_B0855 hypothetical protein gene gene465 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0448 Amico_0449 Amico_0449 Amico_0449 479467 480948 + N-6 DNA methylase PFAM: N-6 DNA methylase~KEGG: afr:AFE_2793 type I restriction-modification system%2C M subunit gene gene466 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0449 Amico_0450 Amico_0450 Amico_0450 480938 482107 + restriction modification system DNA specificity domain protein PFAM: restriction modification system DNA specificity domain~KEGG: cjj:CJJ81176_1536 hypothetical protein gene gene467 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0450 Amico_0451 Amico_0451 Amico_0451 482108 485302 + type I site-specific deoxyribonuclease%2C HsdR family TIGRFAM: type I site-specific deoxyribonuclease%2C HsdR family~PFAM: protein of unknown function DUF450%3B type III restriction protein res subunit~KEGG: dma:DMR_15220 type I restriction enzyme R protein~SMART: DEAD-like helicase gene gene468 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0451 Amico_0452 Amico_0452 Amico_0452 485355 485543 + Uncharacterized conserved protein UCP037246 PFAM: Uncharacterised conserved protein UCP037246 gene gene469 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0452 Amico_0453 Amico_0453 Amico_0453 485629 485778 + hypothetical protein gene gene470 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0453 Amico_0454 Amico_0454 Amico_0454 485997 486788 + Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~KEGG: cha:CHAB381_1793 hydrolase in agr operon (ORF 5) gene gene471 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0454 Amico_0455 Amico_0455 Amico_0455 487302 487922 + transcriptional regulator%2C GntR family KEGG: sfr:Sfri_1551 transcriptional regulator%2C GntR family protein~PFAM: GntR domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene472 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0455 Amico_0456 Amico_0456 Amico_0456 488044 489045 + uroporphyrinogen decarboxylase KEGG: reu:Reut_B5441 uroporphyrinogen decarboxylase gene gene473 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0456 Amico_0457 Amico_0457 Amico_0457 489855 490922 + Extracellular solute-binding protein%2C family 7 PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~KEGG: pmy:Pmen_4515 TRAP dicarboxylate transporter- DctP subunit gene gene474 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0457 Amico_0458 Amico_0458 Amico_0458 490987 491532 + Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: dat:HRM2_38360 DctQ6 gene gene475 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0458 Amico_0459 Amico_0459 Amico_0459 491542 492843 + TRAP dicarboxylate transporter%2C DctM subunit KEGG: rpb:RPB_1293 TRAP dicarboxylate transporter DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene476 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0459 Amico_0460 Amico_0460 Amico_0460 493095 493685 + conserved hypothetical protein KEGG: gme:Gmet_3458 hypothetical protein gene gene477 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0460 Amico_0461 Amico_0461 Amico_0461 493761 494939 + Methionine gamma-lyase KEGG: cko:CKO_04984 hypothetical protein~PFAM: Cys/Met metabolism pyridoxal-phosphate- dependent protein gene gene478 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0461 Amico_0462 Amico_0462 Amico_0462 495186 497786 + ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC KEGG: sat:SYN_02218 cation transport ATPase~TIGRFAM: ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~PFAM: E1-E2 ATPase-associated domain protein%3B cation transporting ATPase domain protein%3B Haloacid dehalogenase domain protein hydrolase gene gene479 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0462 Amico_0463 Amico_0463 Amico_0463 497877 499991 - phosphoesterase PA-phosphatase related protein KEGG: pin:Ping_1883 phosphoesterase%2C PA-phosphatase related~PFAM: phosphoesterase PA-phosphatase related%3B SNARE associated Golgi protein~SMART: phosphoesterase PA-phosphatase related gene gene480 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0463 Amico_0464 Amico_0464 Amico_0464 500180 500866 - ABC transporter related protein KEGG: eta:ETA_13940 ABC transporter%2C ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene481 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0464 Amico_0465 Amico_0465 Amico_0465 500866 501687 - Sigma 54 interacting domain protein KEGG: hap:HAPS_1451 ABC transporter ATP-binding protein~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~SMART: AAA ATPase gene gene482 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0465 Amico_0466 Amico_0466 Amico_0466 501684 502481 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: asa:ASA_2644 ABC-type dipeptide/oligopeptide/nickel transporter%2C permease component gene gene483 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0466 Amico_0467 Amico_0467 Amico_0467 502478 503434 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: eta:ETA_13920 ABC transporter%2C permease protein gene gene484 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0467 Amico_0468 Amico_0468 Amico_0468 503422 504960 - extracellular solute-binding protein family 5 PFAM: extracellular solute-binding protein family 5~KEGG: rhi:NGR_b06090 putative ABC-type dipeptide transport system%2C periplasmic component gene gene485 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0468 Amico_0469 Amico_0469 Amico_0469 504994 505692 - Methyltransferase type 11 PFAM: Methyltransferase type 11%3B Methyltransferase type 12~KEGG: pmr:PMI2948 probable methyltransferase gene gene486 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0469 Amico_0470 Amico_0470 Amico_0470 505938 506216 + pseudogene gene487 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0470 Amico_0471 Amico_0471 Amico_0471 506327 507280 + pyruvate formate lyase activating enzyme KEGG: scl:sce0132 pyruvate formate lyase activating enzyme gene gene488 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0471 Amico_0472 Amico_0472 Amico_0472 507339 507812 - methionine-R-sulfoxide reductase TIGRFAM: methionine-R-sulfoxide reductase~KEGG: glo:Glov_1981 methionine-R-sulfoxide reductase~PFAM: Methionine sulfoxide reductase B gene gene489 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0472 Amico_0473 Amico_0473 Amico_0473 508022 508828 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: sfu:Sfum_0522 short-chain dehydrogenase/reductase SDR gene gene490 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0473 Amico_0474 Amico_0474 Amico_0474 508868 510046 - conserved hypothetical protein KEGG: sfu:Sfum_1924 hypothetical protein gene gene491 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0474 Amico_0475 Amico_0475 Amico_0475 510407 511149 + pseudogene gene492 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0475 Amico_0476 Amico_0476 Amico_0476 511518 512477 + hypothetical protein KEGG: son:SO_2944 hypothetical protein gene gene493 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0476 Amico_0477 Amico_0477 Amico_0477 512532 513002 - methylated-DNA/protein-cysteinemethyltransferase TIGRFAM: methylated-DNA/protein-cysteine methyltransferase~KEGG: ppd:Ppro_1338 methylated-DNA--protein- cysteine methyltransferase~PFAM: Methylated-DNA-[protein]-cysteine S- methyltransferase DNA binding%3B methylguanine DNA methyltransferase ribonuclease domain protein gene gene494 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0477 Amico_0478 Amico_0478 Amico_0478 513184 513978 + MscS Mechanosensitive ion channel PFAM: MscS Mechanosensitive ion channel~KEGG: pca:Pcar_0812 small-conductance mechanosensitive channel gene gene495 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0478 Amico_0479 Amico_0479 Amico_0479 514179 514391 + hypothetical protein gene gene496 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0479 Amico_0480 Amico_0480 Amico_0480 514439 515347 - protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane%3B UAA transporter~KEGG: gbm:Gbem_2300 protein of unknown function DUF6 transmembrane gene gene497 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0480 Amico_0481 Amico_0481 Amico_0481 515559 516251 + hypothetical protein KEGG: sun:SUN_2018 hypothetical protein gene gene498 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0481 Amico_0482 Amico_0482 Amico_0482 516322 516825 + ErfK/YbiS/YcfS/YnhG family protein PFAM: ErfK/YbiS/YcfS/YnhG family protein~KEGG: dde:Dde_3013 ErfK/YbiS/YcfS/YnhG family protein gene gene499 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0482 Amico_0483 Amico_0483 Amico_0483 516941 517612 + B3/4 domain protein PFAM: B3/4 domain protein~KEGG: dvl:Dvul_1142 hypothetical protein gene gene500 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0483 Amico_0484 Amico_0484 Amico_0484 517631 517747 + hypothetical protein gene gene501 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0484 Amico_0485 Amico_0485 Amico_0485 517833 518162 + Cupin 2 conserved barrel domain protein PFAM: Cupin 2 conserved barrel domain protein~KEGG: gem:GM21_0411 cupin 2 conserved barrel domain protein gene gene502 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0485 Amico_0486 Amico_0486 Amico_0486 518310 519584 + outer membrane efflux protein PFAM: outer membrane efflux protein~KEGG: sat:SYN_02462 type I secretion outer membrane protein gene gene503 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0486 Amico_0487 Amico_0487 Amico_0487 519581 520786 + efflux transporter%2C RND family%2C MFP subunit KEGG: sat:SYN_01993 periplasmic component of efflux system~TIGRFAM: efflux transporter%2C RND family%2C MFP subunit~PFAM: secretion protein HlyD family protein gene gene504 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0487 Amico_0488 Amico_0488 Amico_0488 520764 521459 + ABC transporter related protein KEGG: sat:SYN_01994 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene505 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0488 Amico_0489 Amico_0489 Amico_0489 521453 522676 + protein of unknown function DUF214 PFAM: protein of unknown function DUF214~KEGG: sat:SYN_01995 export ABC transporter permease protein gene gene506 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0489 Amico_0490 Amico_0490 Amico_0490 522733 523989 - hypothetical protein gene gene507 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0490 Amico_0491 Amico_0491 Amico_0491 524051 525079 - Homoserine dehydrogenase KEGG: rlt:Rleg2_5063 homoserine dehydrogenase~PFAM: homoserine dehydrogenase%3B homoserine dehydrogenase NAD-binding gene gene508 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0491 Amico_0492 Amico_0492 Amico_0492 525178 525282 - hypothetical protein gene gene509 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0492 Amico_0493 Amico_0493 Amico_0493 525394 525945 - ferritin Dps family protein KEGG: gem:GM21_2517 ferritin Dps family protein gene gene510 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0493 Amico_0494 Amico_0494 Amico_0494 526180 526380 + cold-shock DNA-binding domain protein KEGG: pca:Pcar_0201 cold shock protein~PFAM: Cold-shock protein DNA-binding~SMART: Cold shock protein gene gene511 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0494 Amico_0495 Amico_0495 Amico_0495 526613 527647 + hypothetical protein KEGG: glo:Glov_2858 hypothetical protein gene gene512 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0495 Amico_0496 Amico_0496 Amico_0496 527681 528436 + Allophanate hydrolase subunit 1 KEGG: dat:HRM2_46540 putative allophanate hydrolase subunit 1~PFAM: Allophanate hydrolase subunit 1~SMART: Allophanate hydrolase subunit 1 gene gene513 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0496 Amico_0497 Amico_0497 Amico_0497 528433 529512 + urea amidolyase related protein SMART: Allophanate hydrolase subunit 2~TIGRFAM: urea amidolyase related protein~KEGG: bbr:BB4478 hypothetical protein~PFAM: Allophanate hydrolase subunit 2 gene gene514 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0497 Amico_0498 Amico_0498 Amico_0498 529536 530309 + LamB/YcsF family protein PFAM: LamB/YcsF family protein~KEGG: bbr:BB4725 hypothetical protein gene gene515 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0498 Amico_0499 Amico_0499 Amico_0499 530306 531103 + protein of unknown function DUF1445 PFAM: protein of unknown function DUF1445~KEGG: par:Psyc_1103 hypothetical protein gene gene516 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0499 Amico_0500 Amico_0500 Amico_0500 531124 531765 + class II aldolase/adducin family protein PFAM: class II aldolase/adducin family protein~KEGG: pca:Pcar_3030 L-fuculose-1-phosphate aldolase gene gene517 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0500 Amico_0501 Amico_0501 Amico_0501 531809 532099 - pseudogene gene518 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0501 Amico_0502 Amico_0502 Amico_0502 532171 532890 - Asp/Glu/hydantoin racemase PFAM: Asp/Glu/hydantoin racemase~KEGG: bbr:BB1531 putative decarboxylase gene gene519 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0502 Amico_0503 Amico_0503 Amico_0503 532901 533782 - hypothetical protein gene gene520 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0503 Amico_0504 Amico_0504 Amico_0504 533853 534506 - protein of unknown function DUF1121 PFAM: protein of unknown function DUF1121~KEGG: dal:Dalk_2774 protein of unknown function DUF1121 gene gene521 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0504 Amico_0505 Amico_0505 Amico_0505 534560 535285 - Asp/Glu/hydantoin racemase PFAM: Asp/Glu/hydantoin racemase~KEGG: avi:Avi_7410 arylmalonate decarboxylase gene gene522 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0505 Amico_0506 Amico_0506 Amico_0506 535314 537212 - TRAP transporter%2C 4TM/12TM fusion protein KEGG: pmr:PMI1055 TRAP-type C4-dicarboxylate transport system permease component~TIGRFAM: TRAP transporter%2C 4TM/12TM fusion protein~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit%3B Citrate transporter gene gene523 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0506 Amico_0507 Amico_0507 Amico_0507 537323 538303 - TRAP transporter solute receptor%2C TAXI family TIGRFAM: TRAP transporter solute receptor%2C TAXI family~KEGG: bbr:BB4954 hypothetical protein gene gene524 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0507 Amico_0508 Amico_0508 Amico_0508 538344 539252 - hypothetical protein KEGG: pol:Bpro_3857 hypothetical protein gene gene525 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0508 Amico_0509 Amico_0509 Amico_0509 539693 539803 + hypothetical protein gene gene526 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0509 Amico_0510 Amico_0510 Amico_0510 539957 540954 + pseudogene gene527 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0510 Amico_0511 Amico_0511 Amico_0511 541220 541882 - transcriptional regulator%2C GntR family KEGG: cti:RALTA_B1520 putative transcriptional regulator%2C HTH GntR~PFAM: regulatory protein GntR HTH%3B GntR domain protein~SMART: regulatory protein GntR HTH gene gene528 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0511 Amico_0512 Amico_0512 Amico_0512 541987 543276 + pyruvate flavodoxin/ferredoxin oxidoreductase domain protein PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein%3B Transketolase domain protein~KEGG: sfu:Sfum_0017 2-oxoglutarate ferredoxin oxidoreductase subunit alpha gene gene529 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0512 Amico_0513 Amico_0513 Amico_0513 543276 544091 + thiamine pyrophosphate protein domain protein TPP-binding protein PFAM: thiamine pyrophosphate protein domain protein TPP-binding~KEGG: ppd:Ppro_2324 2-oxoglutarate ferredoxin oxidoreductase subunit beta gene gene530 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0513 Amico_0514 Amico_0514 Amico_0514 544088 544654 + Pyruvate/ketoisovalerate oxidoreductase PFAM: Pyruvate/ketoisovalerate oxidoreductase~KEGG: afw:Anae109_1896 pyruvate ferredoxin/flavodoxin oxidoreductase gene gene531 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0514 Amico_0515 Amico_0515 Amico_0515 544641 545774 + Succinate--CoA ligase (ADP-forming) KEGG: mlo:mlr1324 malate--CoA ligase subunit beta~PFAM: ATP-grasp domain protein%3B ATP-citrate lyase/succinyl-CoA ligase gene gene532 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0515 Amico_0516 Amico_0516 Amico_0516 545777 546643 + succinyl-CoA synthetase%2C alpha subunit KEGG: nis:NIS_0839 succinyl-CoA synthase%2C alpha subunit~TIGRFAM: succinyl-CoA synthetase%2C alpha subunit~PFAM: ATP-citrate lyase/succinyl-CoA ligase%3B CoA- binding domain protein gene gene533 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0516 Amico_0517 Amico_0517 Amico_0517 546649 546849 + 4Fe-4S ferredoxin iron-sulfur binding domain protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: dal:Dalk_1630 4Fe-4S ferredoxin iron-sulfur binding domain protein gene gene534 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0517 Amico_0518 Amico_0518 Amico_0518 546866 548068 + aminotransferase class I and II PFAM: aminotransferase class I and II~KEGG: gur:Gura_2501 aminotransferase%2C class I and II gene gene535 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0518 Amico_0519 Amico_0519 Amico_0519 548137 549168 - Homoserine dehydrogenase KEGG: rhi:NGR_b07030 homoserine dehydrogenase~PFAM: homoserine dehydrogenase%3B homoserine dehydrogenase NAD-binding gene gene536 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0519 Amico_0520 Amico_0520 Amico_0520 549292 549804 + protein of unknown function DUF395 YeeE/YedE Contains selenocysteine gene gene537 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0520 Amico_0521 Amico_0521 Amico_0521 549811 550341 + protein of unknown function DUF395 YeeE/YedE PFAM: protein of unknown function DUF395 YeeE/YedE~KEGG: dvm:DvMF_0176 protein of unknown function DUF395 YeeE/YedE gene gene538 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0521 Amico_0522 Amico_0522 Amico_0522 550449 551363 + protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane%3B Protein of unknown function DUF250~KEGG: gbm:Gbem_2300 protein of unknown function DUF6 transmembrane gene gene539 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0522 Amico_0523 Amico_0523 Amico_0523 551409 551807 - Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: putative translation initiation inhibitor%2C yjgF family gene gene540 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0523 Amico_0524 Amico_0524 Amico_0524 552194 553129 - Uncharacterized protein family UPF0324 PFAM: Uncharacterised protein family UPF0324~KEGG: glo:Glov_0952 hypothetical protein gene gene541 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0524 Amico_0525 Amico_0525 Amico_0525 553254 554150 + transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: gsu:GSU2817 LysR family transcriptional regulator gene gene542 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0525 Amico_0526 Amico_0526 Amico_0526 554204 555382 - tryptophan synthase%2C beta subunit KEGG: dps:DP2949 tryptophan synthase subunit beta~TIGRFAM: tryptophan synthase%2C beta subunit~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit gene gene543 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0526 Amico_0527 Amico_0527 Amico_0527 555774 555905 - hypothetical protein gene gene544 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0527 Amico_0528 Amico_0528 Amico_0528 556067 557182 - Phenylacetate--CoA ligase KEGG: gme:Gmet_1825 phenylacetate-CoA ligase gene gene545 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0528 Amico_0529 Amico_0529 Amico_0529 557423 557664 + pseudogene gene546 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0529 Amico_0530 Amico_0530 Amico_0530 557767 558864 - (uracil-5)-methyltransferase KEGG: dol:Dole_3073 (uracil-5)-methyltransferase gene gene547 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0530 Amico_0531 Amico_0531 Amico_0531 558839 559003 - hypothetical protein gene gene548 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0531 Amico_0532 Amico_0532 Amico_0532 559317 560690 + putative PAS/PAC sensor protein TIGRFAM: PAS sensor protein~PFAM: metal-dependent phosphohydrolase HD sub domain%3B PAS fold-3 domain protein%3B PAS fold domain protein~KEGG: sat:SYN_01234 response regulator receiver domain-containing protein~SMART: metal-dependent phosphohydrolase HD region%3B PAC repeat-containing protein%3B PAS domain containing protein gene gene549 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0532 Amico_0533 Amico_0533 Amico_0533 560811 561278 + hypothetical protein gene gene550 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0533 Amico_0534 Amico_0534 Amico_0534 561285 563897 - putative PAS/PAC sensor protein TIGRFAM: PAS sensor protein%3B metal dependent phophohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain%3B Metal-dependent hydrolase HDOD%3B PAS fold domain protein~KEGG: rfr:Rfer_3391 putative PAS/PAC sensor protein~SMART: metal-dependent phosphohydrolase HD region%3B PAS domain containing protein gene gene551 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0534 Amico_0535 Amico_0535 Amico_0535 563914 566070 - Tex-like protein protein-like protein KEGG: sfu:Sfum_1838 RNA-binding S1 domain- containing protein~PFAM: Tex-like protein-like%3B RNA binding S1 domain protein~SMART: Resolvase RNase H domain protein fold gene gene552 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0535 Amico_0536 Amico_0536 Amico_0536 566186 566800 + hypothetical protein KEGG: reh:H16_B1604 phosphohydrolase gene gene553 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0536 Amico_0537 Amico_0537 Amico_0537 566973 567233 + Stage V sporulation protein S PFAM: Stage V sporulation protein S~KEGG: hypothetical protein gene gene554 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0537 Amico_0538 Amico_0538 Amico_0538 567453 568715 + histidyl-tRNA synthetase TIGRFAM: histidyl-tRNA synthetase~KEGG: gsu:GSU1659 histidyl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B Anticodon-binding domain protein gene gene555 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0538 Amico_0539 Amico_0539 Amico_0539 568755 570563 + aspartyl-tRNA synthetase KEGG: sfu:Sfum_3302 aspartyl-tRNA synthetase~TIGRFAM: aspartyl-tRNA synthetase~PFAM: tRNA synthetase class II (D K and N)%3B tRNA synthetase class II (G H P and S)%3B GAD domain protein%3B nucleic acid binding OB-fold tRNA/helicase-type gene gene556 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0539 Amico_0540 Amico_0540 Amico_0540 570621 571313 + beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: ank:AnaeK_1127 beta-lactamase domain protein gene gene557 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0540 Amico_0541 Amico_0541 Amico_0541 571325 572191 - transcriptional regulator%2C RpiR family PFAM: sugar isomerase (SIS)%3B helix-turn-helix protein RpiR~KEGG: bpd:BURPS668_A1857 RpiR family transcriptional regulator gene gene558 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0541 Amico_0542 Amico_0542 Amico_0542 572286 573233 - Radical SAM domain protein KEGG: gsu:GSU2227 radical SAM domain-containing protein~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB gene gene559 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0542 Amico_0543 Amico_0543 Amico_0543 573247 573618 - transcriptional regulator%2C XRE family PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein~KEGG: geo:Geob_0718 transcriptional regulator%2C XRE family gene gene560 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0543 Amico_0544 Amico_0544 Amico_0544 573813 574712 + transcriptional regulator%2C LysR family PFAM: LysR substrate-binding%3B regulatory protein LysR~KEGG: dar:Daro_1985 regulatory protein%2C LysR:LysR%2C substrate-binding gene gene561 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0544 Amico_0545 Amico_0545 Amico_0545 574702 575190 + YbaK/prolyl-tRNA synthetase associated region PFAM: YbaK/prolyl-tRNA synthetase associated region~KEGG: pap:PSPA7_2120 YbaK/prolyl-tRNA synthetase associated region gene gene562 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0545 Amico_0546 Amico_0546 Amico_0546 575192 575617 - protein of unknown function DUF296 PFAM: protein of unknown function DUF296~KEGG: mms:mma_1955 hypothetical protein gene gene563 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0546 Amico_0547 Amico_0547 Amico_0547 575806 576033 + hypothetical protein gene gene564 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0547 Amico_0548 Amico_0548 Amico_0548 576001 576990 - Asparaginase/glutaminase PFAM: Asparaginase/glutaminase~KEGG: dps:DP0994 L-asparaginase gene gene565 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0548 Amico_0549 Amico_0549 Amico_0549 577057 577719 - protein of unknown function DUF1121 PFAM: protein of unknown function DUF1121~KEGG: dal:Dalk_2774 protein of unknown function DUF1121 gene gene566 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0549 Amico_0550 Amico_0550 Amico_0550 577881 578174 + putative helix-turn-helix protein YlxM/p13 family protein PFAM: putative helix-turn-helix protein YlxM/p13 family protein%3B Sigma-70 region 4 type 2~KEGG: Protein kinase domain containing protein%3B K04514 Rho-associated%2C coiled-coil containing protein kinase gene gene567 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0550 Amico_0551 Amico_0551 Amico_0551 578203 579552 + signal recognition particle protein TIGRFAM: signal recognition particle protein~PFAM: GTP-binding signal recognition particle SRP54 G- domain%3B Signal peptide binding (SRP54) M- domain protein%3B GTP-binding signal recognition particle SRP54 helical bundle~KEGG: sfu:Sfum_3038 signal recognition particle protein~SMART: AAA ATPase gene gene568 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0551 Amico_0552 Amico_0552 Amico_0552 579618 579893 + ribosomal protein S16 KEGG: gme:Gmet_2871 30S ribosomal protein S16~TIGRFAM: ribosomal protein S16~PFAM: ribosomal protein S16 gene gene569 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0552 Amico_0553 Amico_0553 Amico_0553 579893 580141 + conserved hypothetical protein KEGG: sfu:Sfum_0021 hypothetical protein gene gene570 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0553 Amico_0554 Amico_0554 Amico_0554 580155 580685 + 16S rRNA processing protein RimM KEGG: dal:Dalk_4647 16S rRNA processing protein RimM~TIGRFAM: 16S rRNA processing protein RimM~PFAM: RimM protein%3B PRC-barrel domain protein gene gene571 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0554 Amico_0555 Amico_0555 Amico_0555 580685 581944 + tRNA (guanine-N1)-methyltransferase TIGRFAM: tRNA (guanine-N1)-methyltransferase~KEGG: dde:Dde_1096 tRNA (guanine37-N1) methyltransferase~PFAM: tRNA (guanine-N1-)-methyltransferase gene gene572 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0555 Amico_0556 Amico_0556 Amico_0556 581978 582325 + ribosomal protein L19 KEGG: hypothetical protein~TIGRFAM: ribosomal protein L19~PFAM: ribosomal protein L19 gene gene573 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0556 Amico_0557 Amico_0557 Amico_0557 582572 583366 - hypothetical protein gene gene575 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0557 Amico_0558 Amico_0558 Amico_0558 583372 584673 - phosphonopyruvate decarboxylase-related protein TIGRFAM: phosphonopyruvate decarboxylase-related protein~KEGG: sat:SYN_00621 phosphoglycerate mutase~PFAM: 2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase%3B metalloenzyme domain protein gene gene576 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0558 Amico_0559 Amico_0559 Amico_0559 584745 585533 + protein of unknown function DUF82 PFAM: protein of unknown function DUF82~KEGG: acp:A2cp1_3352 protein of unknown function DUF82 gene gene577 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0559 Amico_0560 Amico_0560 Amico_0560 585577 587631 + CoA-binding domain protein KEGG: bpy:Bphyt_4084 CoA-binding domain protein gene gene578 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0560 Amico_0561 Amico_0561 Amico_0561 587634 588236 + protein of unknown function DUF205 PFAM: protein of unknown function DUF205~KEGG: pca:Pcar_0651 hypothetical protein gene gene579 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0561 Amico_0562 Amico_0562 Amico_0562 588329 588811 + transcriptional repressor%2C CtsR PFAM: Firmicute transcriptional repressor of class III stress genes gene gene580 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0562 Amico_0563 Amico_0563 Amico_0563 588839 591331 + ATPase AAA-2 domain protein KEGG: CLPC%3B CLPC (HEAT SHOCK PROTEIN 93-V)%3B ATP binding / ATPase~PFAM: ATPase AAA-2 domain protein%3B Clp ATPase-like%3B AAA ATPase central domain protein%3B UvrB/UvrC protein%3B ATPase associated with various cellular activities AAA_5%3B Clp domain protein~SMART: AAA ATPase gene gene581 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0563 Amico_0564 Amico_0564 Amico_0564 591447 592268 + protein of unknown function DUF114 PFAM: protein of unknown function DUF114~KEGG: afw:Anae109_3319 hypothetical protein gene gene582 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0564 Amico_0565 Amico_0565 Amico_0565 592295 592813 + hypothetical protein gene gene583 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0565 Amico_0566 Amico_0566 Amico_0566 592836 593699 + MscS Mechanosensitive ion channel PFAM: MscS Mechanosensitive ion channel~KEGG: noc:Noc_0602 MscS mechanosensitive ion channel gene gene584 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0566 Amico_0567 Amico_0567 Amico_0567 593669 595417 - Sporulation domain protein PFAM: Sporulation domain protein~KEGG: xca:xccb100_4252 hypothetical protein gene gene585 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0567 Amico_0568 Amico_0568 Amico_0568 595822 596232 + S-adenosylmethionine decarboxylase proenzyme KEGG: nis:NIS_1526 S-adenosylmethionine decarboxylase proenzyme~TIGRFAM: S-adenosylmethionine decarboxylase proenzyme~PFAM: S-adenosylmethionine decarboxylase related gene gene587 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0568 Amico_0569 Amico_0569 Amico_0569 596717 596812 + hypothetical protein gene gene590 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0569 Amico_0570 Amico_0570 Amico_0570 596990 598330 + sodium:neurotransmitter symporter PFAM: sodium:neurotransmitter symporter~KEGG: cvi:CV_1670 sodium/chloride ion channel gene gene591 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0570 Amico_0571 Amico_0571 Amico_0571 598489 599745 + ketose-bisphosphate aldolase class-II PFAM: ketose-bisphosphate aldolase class-II~KEGG: dol:Dole_2284 fructose/tagatose bisphosphate aldolase-like protein gene gene592 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0571 Amico_0572 Amico_0572 Amico_0572 600076 601125 + threonine synthase KEGG: abo:ABO_0807 threonine synthase~TIGRFAM: threonine synthase~PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit gene gene593 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0572 Amico_0573 Amico_0573 Amico_0573 601122 602030 + homoserine kinase KEGG: homoserine kinase (predicted)%3B K00872 homoserine kinase~TIGRFAM: homoserine kinase~PFAM: GHMP kinase%3B GHMP kinase domain protein gene gene594 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0573 Amico_0574 Amico_0574 Amico_0574 602063 602575 + pseudogene gene595 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0574 Amico_0575 Amico_0575 Amico_0575 602637 603395 + OstA family protein PFAM: OstA family protein gene gene596 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0575 Amico_0576 Amico_0576 Amico_0576 603395 604123 + ABC transporter related protein KEGG: sat:SYN_00946 ABC transporter ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene597 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0576 Amico_0577 Amico_0577 Amico_0577 604096 604572 - hydrogenase maturation protease KEGG: dze:Dd1591_2717 hydrogenase maturation protease HycI~TIGRFAM: hydrogenase maturation protease~PFAM: peptidase M52 hydrogen uptake protein gene gene598 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0577 Amico_0578 Amico_0578 Amico_0578 604615 606171 + integral membrane protein MviN KEGG: sat:SYN_00104 virulence factor protein~TIGRFAM: integral membrane protein MviN~PFAM: virulence factor MVIN family protein%3B multi antimicrobial extrusion protein MatE gene gene599 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0578 Amico_0579 Amico_0579 Amico_0579 606191 606733 + hypothetical protein gene gene600 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0579 Amico_0580 Amico_0580 Amico_0580 606740 607753 + metalloendopeptidase%2C glycoprotease family TIGRFAM: metalloendopeptidase%2C glycoprotease family~KEGG: glo:Glov_2314 metalloendopeptidase%2C glycoprotease family~PFAM: peptidase M22 glycoprotease gene gene601 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0580 Amico_0581 Amico_0581 Amico_0581 607957 608247 + chaperonin Cpn10 PFAM: chaperonin Cpn10~KEGG: sat:SYN_00062 co-chaperonin gene gene602 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0581 Amico_0582 Amico_0582 Amico_0582 608285 609922 + chaperonin GroEL KEGG: gur:Gura_4307 chaperonin GroEL~TIGRFAM: chaperonin GroEL~PFAM: chaperonin Cpn60/TCP-1 gene gene603 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0582 Amico_0583 Amico_0583 Amico_0583 610051 611583 + GMP synthase%2C large subunit KEGG: glo:Glov_1901 GMP synthase~TIGRFAM: GMP synthase%2C large subunit%3B GMP synthase%2C small subunit~PFAM: GMP synthase domain protein%3B glutamine amidotransferase class-I gene gene604 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0583 Amico_0584 Amico_0584 Amico_0584 611596 612804 + protein of unknown function UPF0118 PFAM: protein of unknown function UPF0118~KEGG: gme:Gmet_1154 hypothetical protein gene gene605 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0584 Amico_0585 Amico_0585 Amico_0585 612814 613461 + Molybdopterin-guanine dinucleotide biosynthesis protein-like protein KEGG: sfu:Sfum_3074 molybdopterin-guanine dinucleotide biosynthesis MobB region gene gene606 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0585 Amico_0586 Amico_0586 Amico_0586 613585 615540 + V-type H(+)-translocating pyrophosphatase TIGRFAM: V-type H(+)-translocating pyrophosphatase~KEGG: pca:Pcar_2001 membrane-bound proton- translocating pyrophosphatase~PFAM: Inorganic H pyrophosphatase gene gene607 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0586 Amico_0587 Amico_0587 Amico_0587 615632 617377 + DNA primase TIGRFAM: DNA primase~PFAM: zinc finger CHC2-family protein%3B DNA primase catalytic core domain%3B TOPRIM domain protein~KEGG: dol:Dole_2153 DNA primase~SMART: zinc finger CHC2-family protein%3B Toprim sub domain protein gene gene608 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0587 Amico_0588 Amico_0588 Amico_0588 617424 617699 + RNA-binding S4 domain protein KEGG: nam:NAMH_1067 S4 domain protein~PFAM: RNA-binding S4 domain protein~SMART: RNA-binding S4 domain protein gene gene609 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0588 Amico_0589 Amico_0589 Amico_0589 617736 619022 + enolase TIGRFAM: enolase~KEGG: ppd:Ppro_1654 phosphopyruvate hydratase~PFAM: enolase gene gene610 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0589 Amico_0590 Amico_0590 Amico_0590 619068 619697 + CoA-binding domain protein PFAM: CoA-binding domain protein%3B Rex DNA-binding domain protein~KEGG: sfu:Sfum_1603 redox-sensing transcriptional repressor REX gene gene611 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0590 Amico_0591 Amico_0591 Amico_0591 619782 620186 + preprotein translocase%2C YajC subunit KEGG: bba:Bd2235 preprotein translocase YajC subunit~TIGRFAM: preprotein translocase%2C YajC subunit~PFAM: YajC family protein gene gene612 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0591 Amico_0592 Amico_0592 Amico_0592 620304 621698 + protein-export membrane protein SecD KEGG: dde:Dde_1818 preprotein translocase subunit SecD~TIGRFAM: protein-export membrane protein SecD%3B protein-export membrane protein%2C SecD/SecF family~PFAM: SecD/SecF/SecDF export membrane protein gene gene613 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0592 Amico_0593 Amico_0593 Amico_0593 621717 622595 + protein-export membrane protein SecF KEGG: tgr:Tgr7_2065 preprotein translocase subunit SecF~TIGRFAM: protein-export membrane protein SecF%3B protein-export membrane protein%2C SecD/SecF family~PFAM: SecD/SecF/SecDF export membrane protein gene gene614 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0593 Amico_0594 Amico_0594 Amico_0594 622780 624231 + Radical SAM domain protein PFAM: Radical SAM domain protein~KEGG: gsu:GSU0244 radical SAM domain-containing protein gene gene615 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0594 Amico_0595 Amico_0595 Amico_0595 624260 624688 + hypothetical protein gene gene616 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0595 Amico_0596 Amico_0596 Amico_0596 624685 626349 + phosphoesterase RecJ domain protein PFAM: phosphoesterase RecJ domain protein%3B phosphoesterase DHHA1~KEGG: dal:Dalk_5177 single-stranded-DNA-specific exonuclease RecJ gene gene617 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0596 Amico_0597 Amico_0597 Amico_0597 626480 628684 + (p)ppGpp synthetase I%2C SpoT/RelA SMART: metal-dependent phosphohydrolase HD region~TIGRFAM: RelA/SpoT family protein~KEGG: gbm:Gbem_3211 (p)ppGpp synthetase I%2C SpoT/RelA~PFAM: RelA/SpoT domain protein%3B TGS domain protein%3B amino acid-binding ACT domain protein%3B metal-dependent phosphohydrolase HD sub domain gene gene618 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0597 Amico_0598 Amico_0598 Amico_0598 628691 629140 + D-tyrosyl-tRNA(Tyr) deacylase KEGG: gur:Gura_0610 D-tyrosyl-tRNA(Tyr) deacylase~TIGRFAM: D-tyrosyl-tRNA(Tyr) deacylase~PFAM: D-tyrosyl-tRNA(Tyr) deacylase gene gene619 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0598 Amico_0599 Amico_0599 Amico_0599 629140 629787 + beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: hsm:HSM_1559 beta-lactamase domain-containing protein gene gene620 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0599 Amico_0600 Amico_0600 Amico_0600 629784 630458 + DNA repair protein RadC KEGG: afr:AFE_0358 DNA repair protein RadC~TIGRFAM: DNA repair protein RadC~PFAM: DNA repair protein RadC%3B helix-hairpin-helix motif gene gene621 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0600 Amico_0601 Amico_0601 Amico_0601 630455 631534 + cell shape determining protein%2C MreB/Mrl family KEGG: pca:Pcar_1049 rod shape-determining protein MreB~TIGRFAM: cell shape determining protein%2C MreB/Mrl family~PFAM: cell shape determining protein MreB/Mrl%3B cell division protein FtsA gene gene622 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0601 Amico_0602 Amico_0602 Amico_0602 631552 632346 + Rod shape-determining protein MreC PFAM: Rod shape-determining protein MreC~KEGG: tbd:Tbd_0261 rod shape-determining protein MreC gene gene623 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0602 Amico_0603 Amico_0603 Amico_0603 632343 632804 + hypothetical protein gene gene624 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0603 Amico_0604 Amico_0604 Amico_0604 632797 634533 + penicillin-binding protein 2 TIGRFAM: penicillin-binding protein 2~KEGG: gme:Gmet_0928 peptidoglycan glycosyltransferase~PFAM: penicillin-binding protein transpeptidase%3B Penicillin-binding protein dimerisation domain gene gene625 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0604 Amico_0605 Amico_0605 Amico_0605 634562 635239 + septum site-determining protein MinC KEGG: vcj:VCD_002407 septum site-determining protein MinC~TIGRFAM: septum site-determining protein MinC~PFAM: Septum formation inhibitor MinC gene gene626 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0605 Amico_0606 Amico_0606 Amico_0606 635266 636069 + septum site-determining protein MinD KEGG: sfu:Sfum_1281 septum site-determining protein MinD~TIGRFAM: septum site-determining protein MinD~PFAM: Cobyrinic acid ac-diamide synthase gene gene627 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0606 Amico_0607 Amico_0607 Amico_0607 636091 636363 + cell division topological specificity factor MinE KEGG: sfu:Sfum_1282 cell division topological specificity factor MinE~TIGRFAM: cell division topological specificity factor MinE~PFAM: Septum formation topological specificity factor MinE gene gene628 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0607 Amico_0608 Amico_0608 Amico_0608 636376 637488 + rod shape-determining protein RodA KEGG: sat:SYN_00550 rod shape-determining protein~TIGRFAM: rod shape-determining protein RodA~PFAM: cell cycle protein gene gene629 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0608 Amico_0609 Amico_0609 Amico_0609 637510 639345 + Radical SAM domain protein KEGG: gem:GM21_0141 radical SAM domain protein~PFAM: Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB gene gene630 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0609 Amico_0610 Amico_0610 Amico_0610 639342 640001 + conserved hypothetical protein KEGG: dps:DP2813 hypothetical protein gene gene631 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0610 Amico_0611 Amico_0611 Amico_0611 639994 641493 + ribonuclease%2C Rne/Rng family TIGRFAM: ribonuclease%2C Rne/Rng family~KEGG: gsu:GSU3239 ribonuclease G~PFAM: RNA-binding protein AU-1/Ribonuclease E/G gene gene632 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0611 Amico_0612 Amico_0612 Amico_0612 641468 644887 + SMC domain protein PFAM: SMC domain protein%3B SMCs flexible hinge domain protein~KEGG: Bartomin %3B K03529 chromosome segregation protein gene gene633 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0612 Amico_0613 Amico_0613 Amico_0613 644875 645615 + methyltransferase small PFAM: methyltransferase small%3B Methyltransferase type 11%3B putative RNA methylase~KEGG: sat:SYN_01006 methyltransferase gene gene634 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0613 Amico_0614 Amico_0614 Amico_0614 645620 646450 + Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase~KEGG: dps:DP1634 hypothetical protein gene gene635 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0614 Amico_0615 Amico_0615 Amico_0615 646463 648394 + methionyl-tRNA synthetase KEGG: gur:Gura_3156 methionyl-tRNA synthetase~TIGRFAM: methionyl-tRNA synthetase%3B methionyl-tRNA synthetase%2C beta subunit~PFAM: tRNA synthetase class I (M)%3B t-RNA-binding domain protein gene gene636 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0615 Amico_0616 Amico_0616 Amico_0616 648465 649259 + hydrolase%2C TatD family KEGG: pca:Pcar_1695 Mg-dependent DNase~TIGRFAM: hydrolase%2C TatD family~PFAM: TatD-related deoxyribonuclease gene gene637 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0616 Amico_0617 Amico_0617 Amico_0617 649259 650395 + queuine tRNA-ribosyltransferase TIGRFAM: queuine tRNA-ribosyltransferase%3B tRNA- guanine transglycosylase%2C various specificities~KEGG: gme:Gmet_0852 queuine tRNA-ribosyltransferase~PFAM: Queuine/other tRNA-ribosyltransferase gene gene638 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0617 Amico_0618 Amico_0618 Amico_0618 650376 651356 + Sua5/YciO/YrdC/YwlC family protein KEGG: hypothetical protein %3B K07566 putative translation factor~TIGRFAM: Sua5/YciO/YrdC/YwlC family protein~PFAM: SUA5/yciO/yrdC domain%3B SUA5 domain protein gene gene639 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0618 Amico_0619 Amico_0619 Amico_0619 651645 655265 + DNA-directed RNA polymerase%2C beta subunit TIGRFAM: DNA-directed RNA polymerase%2C beta subunit~KEGG: similar to DNA-directed RNA polymerase beta subunit~PFAM: RNA polymerase Rpb2 domain 6%3B RNA polymerase Rpb2 domain 7%3B RNA polymerase Rpb2 domain 3%3B RNA polymerase Rpb2 domain 2%3B RNA polymerase beta subunit%3B DNA- directed RNA polymerase%2C beta subunit%2C external 1 domain gene gene641 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0619 Amico_0620 Amico_0620 Amico_0620 655266 660293 + DNA-directed RNA polymerase%2C beta' subunit TIGRFAM: DNA-directed RNA polymerase%2C beta' subunit~PFAM: RNA polymerase Rpb1 domain 1%3B RNA polymerase alpha subunit%3B RNA polymerase Rpb1 domain 5%3B RNA polymerase Rpb1 domain 3%3B RNA polymerase Rpb1 domain 4~KEGG: sat:SYN_00063 DNA-directed RNA polymerase beta' chain~SMART: RNA polymerase I subunit A domain protein gene gene642 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0620 Amico_0621 Amico_0621 Amico_0621 660353 660703 + RNA 2-O ribose methyltransferase substrate binding protein PFAM: RNA 2-O ribose methyltransferase substrate binding gene gene643 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0621 Amico_0622 Amico_0622 Amico_0622 660725 661096 + ribosomal protein S12 KEGG: gme:Gmet_0621 30S ribosomal protein S12~TIGRFAM: ribosomal protein S12~PFAM: ribosomal protein S12/S23 gene gene644 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0622 Amico_0623 Amico_0623 Amico_0623 661126 661596 + ribosomal protein S7 KEGG: dma:DMR_12160 30S ribosomal protein S7~TIGRFAM: ribosomal protein S7~PFAM: ribosomal protein S7 gene gene645 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0623 Amico_0624 Amico_0624 Amico_0624 661649 663712 + translation elongation factor G KEGG: gur:Gura_1065 elongation factor G~TIGRFAM: translation elongation factor G%3B small GTP- binding protein~PFAM: protein synthesis factor GTP-binding%3B elongation factor G domain protein%3B elongation factor Tu domain 2 protein%3B elongation factor G domain IV gene gene646 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0624 Amico_0625 Amico_0625 Amico_0625 663744 664946 + translation elongation factor Tu KEGG: ade:Adeh_1947 elongation factor Tu~TIGRFAM: translation elongation factor Tu%3B small GTP-binding protein~PFAM: protein synthesis factor GTP-binding%3B elongation factor Tu domain protein%3B elongation factor Tu domain 2 protein gene gene647 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0625 Amico_0626 Amico_0626 Amico_0626 664972 665277 + ribosomal protein S10 KEGG: xcc:XCC0894 30S ribosomal protein S10~TIGRFAM: ribosomal protein S10~PFAM: ribosomal protein S10 gene gene648 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0626 Amico_0627 Amico_0627 Amico_0627 665308 665934 + 50S ribosomal protein L3 KEGG: dvm:DvMF_0079 50S ribosomal protein L3~TIGRFAM: 50S ribosomal protein L3~PFAM: ribosomal protein L3 gene gene649 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0627 Amico_0628 Amico_0628 Amico_0628 665964 666587 + ribosomal protein L4/L1e PFAM: ribosomal protein L4/L1e~KEGG: sfu:Sfum_1556 ribosomal protein L4/L1e gene gene650 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0628 Amico_0629 Amico_0629 Amico_0629 666584 666880 + Ribosomal protein L25/L23 PFAM: Ribosomal protein L25/L23~KEGG: dal:Dalk_1913 ribosomal protein L25/L23 gene gene651 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0629 Amico_0630 Amico_0630 Amico_0630 666900 667727 + ribosomal protein L2 KEGG: dal:Dalk_1912 50S ribosomal protein L2~TIGRFAM: ribosomal protein L2~PFAM: ribosomal protein L2 gene gene652 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0630 Amico_0631 Amico_0631 Amico_0631 667745 668026 + ribosomal protein S19 KEGG: sat:SYN_00989 SSU ribosomal protein S19P~TIGRFAM: ribosomal protein S19~PFAM: ribosomal protein S19/S15 gene gene653 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0631 Amico_0632 Amico_0632 Amico_0632 668042 668374 + ribosomal protein L22 KEGG: hha:Hhal_0853 ribosomal protein L22~TIGRFAM: ribosomal protein L22~PFAM: ribosomal protein L22/L17 gene gene654 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0632 Amico_0633 Amico_0633 Amico_0633 668388 669053 + ribosomal protein S3 TIGRFAM: ribosomal protein S3~PFAM: ribosomal protein S3- domain protein%3B KH type 2 domain protein%3B Ribosomal protein S3 domain~KEGG: gbm:Gbem_0939 ribosomal protein S3~SMART: KH domain protein gene gene655 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0633 Amico_0634 Amico_0634 Amico_0634 669060 669482 + ribosomal protein L16 KEGG: sat:SYN_00992 50S ribosomal protein L16~TIGRFAM: ribosomal protein L16~PFAM: Ribosomal protein L10e/L16 gene gene656 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0634 Amico_0635 Amico_0635 Amico_0635 669485 669697 + ribosomal protein L29 KEGG: pca:Pcar_0709 ribosomal protein L29~TIGRFAM: ribosomal protein L29~PFAM: ribosomal protein L29 gene gene657 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0635 Amico_0636 Amico_0636 Amico_0636 669704 670003 + 30S ribosomal protein S17 KEGG: dma:DMR_12290 30S ribosomal protein S17~TIGRFAM: 30S ribosomal protein S17~PFAM: ribosomal protein S17 gene gene658 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0636 Amico_0637 Amico_0637 Amico_0637 670007 670375 + ribosomal protein L14 KEGG: ppd:Ppro_0690 50S ribosomal protein L14~TIGRFAM: ribosomal protein L14~PFAM: ribosomal protein L14b/L23e gene gene659 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0637 Amico_0638 Amico_0638 Amico_0638 670391 670717 + ribosomal protein L24 TIGRFAM: ribosomal protein L24~PFAM: KOW domain protein~KEGG: pca:Pcar_0712 ribosomal protein L24~SMART: KOW domain protein gene gene660 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0638 Amico_0639 Amico_0639 Amico_0639 670730 671275 + ribosomal protein L5 PFAM: ribosomal protein L5~KEGG: gme:Gmet_0638 50S ribosomal protein L5 gene gene661 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0639 Amico_0640 Amico_0640 Amico_0640 671295 671480 + ribosomal protein S14 PFAM: ribosomal protein S14~KEGG: pca:Pcar_0714 30S ribosomal protein S14 gene gene662 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0640 Amico_0641 Amico_0641 Amico_0641 671510 671914 + ribosomal protein S8 PFAM: ribosomal protein S8~KEGG: geo:Geob_3611 ribosomal protein S8 gene gene663 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0641 Amico_0642 Amico_0642 Amico_0642 671933 672472 + ribosomal protein L6 KEGG: pca:Pcar_0716 50S ribosomal protein L6~TIGRFAM: ribosomal protein L6~PFAM: Ribosomal protein L6%2C alpha-beta domain gene gene664 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0642 Amico_0643 Amico_0643 Amico_0643 672488 672856 + ribosomal protein L18 KEGG: GSVIVT00019749001%3B similar to ribosomal protein S17 %3B K02881 large subunit ribosomal protein L18~TIGRFAM: ribosomal protein L18~PFAM: ribosomal protein L18P/L5E gene gene665 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0643 Amico_0644 Amico_0644 Amico_0644 672872 673384 + ribosomal protein S5 KEGG: ank:AnaeK_1950 ribosomal protein S5~TIGRFAM: ribosomal protein S5~PFAM: ribosomal protein S5 domain protein%3B Ribosomal protein S5 gene gene666 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0644 Amico_0645 Amico_0645 Amico_0645 673400 673585 + ribosomal protein L30 KEGG: pin:Ping_3506 ribosomal protein L30~TIGRFAM: ribosomal protein L30~PFAM: ribosomal protein L30 gene gene667 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0645 Amico_0646 Amico_0646 Amico_0646 673598 674044 + ribosomal protein L15 KEGG: pca:Pcar_0720 ribosomal protein L15~TIGRFAM: ribosomal protein L15~PFAM: ribosomal protein L15 gene gene668 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0646 Amico_0647 Amico_0647 Amico_0647 674045 675343 + preprotein translocase%2C SecY subunit KEGG: gsu:GSU2837 preprotein translocase subunit SecY~TIGRFAM: preprotein translocase%2C SecY subunit~PFAM: SecY protein gene gene669 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0647 Amico_0648 Amico_0648 Amico_0648 675360 676016 + adenylate kinase KEGG: pca:Pcar_0722 adenylate kinase~TIGRFAM: adenylate kinase~PFAM: adenylate kinase%3B adenylate kinase lid domain protein gene gene670 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0648 Amico_0649 Amico_0649 Amico_0649 676013 676789 + methionine aminopeptidase%2C type I KEGG: sfu:Sfum_1577 methionine aminopeptidase%2C type I~TIGRFAM: methionine aminopeptidase%2C type I~PFAM: peptidase M24 gene gene671 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0649 Amico_0650 Amico_0650 Amico_0650 676774 677067 + hypothetical protein gene gene672 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0650 Amico_0651 Amico_0651 Amico_0651 677103 677324 + translation initiation factor IF-1 KEGG: mxa:MXAN_3321 translation initiation factor IF-1~TIGRFAM: translation initiation factor IF-1~PFAM: S1 IF1 family protein gene gene673 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0651 Amico_0652 Amico_0652 Amico_0652 677444 677569 + ribosomal protein L36 KEGG: mxa:MXAN_3322 50S ribosomal protein L36~TIGRFAM: ribosomal protein L36~PFAM: ribosomal protein L36 gene gene674 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0652 Amico_0653 Amico_0653 Amico_0653 677577 677954 + 30S ribosomal protein S13 KEGG: gme:Gmet_0650 30S ribosomal protein S13~TIGRFAM: 30S ribosomal protein S13~PFAM: ribosomal protein S13 gene gene675 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0653 Amico_0654 Amico_0654 Amico_0654 677990 678382 + 30S ribosomal protein S11 KEGG: sat:SYN_01599 30S ribosomal protein S11~TIGRFAM: 30S ribosomal protein S11~PFAM: ribosomal protein S11 gene gene676 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0654 Amico_0655 Amico_0655 Amico_0655 678415 679044 + ribosomal protein S4 TIGRFAM: ribosomal protein S4~PFAM: ribosomal protein S4%3B RNA-binding S4 domain protein~KEGG: ppd:Ppro_0705 30S ribosomal protein S4~SMART: RNA-binding S4 domain protein gene gene677 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0655 Amico_0656 Amico_0656 Amico_0656 679057 680076 + DNA-directed RNA polymerase%2C alpha subunit TIGRFAM: DNA-directed RNA polymerase%2C alpha subunit~PFAM: RNA polymerase insert%3B RNA polymerase alpha subunit domain protein%3B RNA polymerase dimerisation~KEGG: afw:Anae109_1938 DNA-directed RNA polymerase subunit alpha~SMART: RNA polymerase RpoA/D/Rpb3-type gene gene678 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0656 Amico_0657 Amico_0657 Amico_0657 680081 680434 + ribosomal protein L17 KEGG: cja:CJA_0725 ribosomal protein L17~TIGRFAM: ribosomal protein L17~PFAM: ribosomal protein L17 gene gene679 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0657 Amico_0658 Amico_0658 Amico_0658 680437 681270 + ABC transporter related protein KEGG: sat:SYN_00209 ABC-type cobalt transport system%2C ATPase component~PFAM: ABC transporter related~SMART: AAA ATPase gene gene680 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0658 Amico_0659 Amico_0659 Amico_0659 681255 682100 + ABC transporter related protein KEGG: geo:Geob_2476 cobalt ABC transporter%2C ATPase subunit~PFAM: ABC transporter related~SMART: AAA ATPase gene gene681 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0659 Amico_0660 Amico_0660 Amico_0660 682097 682909 + cobalt transport protein PFAM: cobalt transport protein~KEGG: sat:SYN_00208 ABC-type cobalt transport system%2C permease component gene gene682 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0660 Amico_0661 Amico_0661 Amico_0661 682909 683724 + tRNA pseudouridine synthase A TIGRFAM: tRNA pseudouridine synthase A~KEGG: fth:FTH_1044 tRNA pseudouridine synthase A~PFAM: Pseudouridine synthase I%2C TruA%2C alpha/beta domain gene gene683 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0661 Amico_0662 Amico_0662 Amico_0662 683784 684833 + cell shape determining protein%2C MreB/Mrl family KEGG: dma:DMR_04700 rod shape-determining protein MreB~TIGRFAM: cell shape determining protein%2C MreB/Mrl family~PFAM: cell shape determining protein MreB/Mrl%3B cell division protein FtsA gene gene684 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0662 Amico_0663 Amico_0663 Amico_0663 684840 685274 + protein of unknown function UPF0153 PFAM: protein of unknown function UPF0153~KEGG: bba:Bd0554 hypothetical protein gene gene685 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0663 Amico_0664 Amico_0664 Amico_0664 685300 685440 + hypothetical protein gene gene686 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0664 Amico_0665 Amico_0665 Amico_0665 685413 686597 + Uncharacterized protein with the myosin-like protein domain KEGG: hypothetical protein gene gene687 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0665 Amico_0666 Amico_0666 Amico_0666 686601 686822 + hypothetical protein gene gene688 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0666 Amico_0667 Amico_0667 Amico_0667 686806 687231 + GCN5-related N-acetyltransferase PFAM: GCN5-related N-acetyltransferase~KEGG: nam:NAMH_1065 acetyltransferase%2C GNAT family gene gene689 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0667 Amico_0668 Amico_0668 Amico_0668 687233 687871 + amidophosphoribosyltransferase-like protein KEGG: gem:GM21_3855 phosphoribosyltransferase gene gene690 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0668 Amico_0669 Amico_0669 Amico_0669 688020 688463 + outer membrane chaperone Skp (OmpH) PFAM: outer membrane chaperone Skp (OmpH)~KEGG: msu:MS1923 HlpA protein gene gene691 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0669 Amico_0670 Amico_0670 Amico_0670 688559 689389 + HAD-superfamily hydrolase%2C subfamily IIB KEGG: haloacid dehalogenase-like hydrolase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IIB~PFAM: Haloacid dehalogenase domain protein hydrolase type 3%3B sucrose-6F-phosphate phosphohydrolase gene gene692 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0670 Amico_0671 Amico_0671 Amico_0671 689438 689935 + protein of unknown function DUF355 PFAM: protein of unknown function DUF355~KEGG: gme:Gmet_2388 hypothetical protein gene gene693 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0671 Amico_0672 Amico_0672 Amico_0672 689993 690358 + DRTGG domain protein PFAM: DRTGG domain protein~KEGG: dat:HRM2_16570 hypothetical protein gene gene694 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0672 Amico_0673 Amico_0673 Amico_0673 690362 690793 + putative anti-sigma regulatory factor%2C serine/threonine protein kinase PFAM: ATP-binding region ATPase domain protein~KEGG: dat:HRM2_16560 RsbW2 gene gene695 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0673 Amico_0674 Amico_0674 Amico_0674 690805 692103 + Fe-S cluster domain protein PFAM: Fe-S cluster domain protein%3B 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: dat:HRM2_16550 iron-sulfur binding hydrogenase gene gene696 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0674 Amico_0675 Amico_0675 Amico_0675 692126 692464 + iron-sulfur binding hydrogenase KEGG: dat:HRM2_16550 iron-sulfur binding hydrogenase gene gene697 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0675 Amico_0676 Amico_0676 Amico_0676 692439 693233 + PHP domain protein KEGG: dat:HRM2_16540 metal-dependent phosphoesterase (PHP family protein)~PFAM: PHP domain protein~SMART: phosphoesterase PHP domain protein gene gene698 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0676 Amico_0677 Amico_0677 Amico_0677 693230 693850 - phosphoribosyl-ATP diphosphatase KEGG: ppr:PBPRA1085 bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP pyrophosphatase protein~TIGRFAM: phosphoribosyl-ATP diphosphatase~PFAM: phosphoribosyl-AMP cyclohydrolase%3B phosphoribosyl-ATP pyrophosphohydrolase gene gene699 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0677 Amico_0678 Amico_0678 Amico_0678 693854 694618 - imidazoleglycerol phosphate synthase%2C cyclase subunit KEGG: nam:NAMH_1790 imidazoleglycerol phosphate synthase%2C cyclase subunit~TIGRFAM: imidazoleglycerol phosphate synthase%2C cyclase subunit~PFAM: histidine biosynthesis protein gene gene700 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0678 Amico_0679 Amico_0679 Amico_0679 694612 695331 - histidine biosynthesis protein PFAM: histidine biosynthesis protein~KEGG: fph:Fphi_0064 1-(5-phosphoribosyl)-5-((5- phosphoribosylamino)methylideneamino)imid azole-4- carboxamideisomerase gene gene701 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0679 Amico_0680 Amico_0680 Amico_0680 695331 695945 - imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit KEGG: cff:CFF8240_1352 imidazole glycerol phosphate synthase subunit HisH~TIGRFAM: imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit~PFAM: glutamine amidotransferase class-I gene gene702 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0680 Amico_0681 Amico_0681 Amico_0681 695942 696511 - Imidazoleglycerol-phosphate dehydratase KEGG: dal:Dalk_3080 imidazoleglycerol-phosphate dehydratase~PFAM: imidazoleglycerol-phosphate dehydratase gene gene703 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0681 Amico_0682 Amico_0682 Amico_0682 696501 697151 - ATP phosphoribosyltransferase TIGRFAM: ATP phosphoribosyltransferase~KEGG: scl:sce9144 hypothetical protein~PFAM: ATP phosphoribosyltransferase catalytic region gene gene704 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0682 Amico_0683 Amico_0683 Amico_0683 697145 698350 - histidyl-tRNA synthetase 2 KEGG: tgr:Tgr7_0902 histidyl-tRNA synthetase 2 gene gene705 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0683 Amico_0684 Amico_0684 Amico_0684 698347 699606 - histidinol dehydrogenase TIGRFAM: histidinol dehydrogenase~KEGG: rhi:NGR_b16070 histidinol dehydrogenase 2~PFAM: Histidinol dehydrogenase gene gene706 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0684 Amico_0685 Amico_0685 Amico_0685 699748 701088 + DNA repair protein RadA KEGG: mes:Meso_0985 DNA repair protein RadA~TIGRFAM: DNA repair protein RadA~SMART: AAA ATPase gene gene707 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0685 Amico_0686 Amico_0686 Amico_0686 701085 702419 + protein of unknown function DUF107 PFAM: protein of unknown function DUF107~KEGG: neu:NE2468 hypothetical protein gene gene708 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0686 Amico_0687 Amico_0687 Amico_0687 702422 703213 + band 7 protein KEGG: sat:SYN_02180 membrane protease subunit%2C stomatin/prohibitin -like protein~PFAM: band 7 protein~SMART: band 7 protein gene gene709 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0687 Amico_0688 Amico_0688 Amico_0688 703294 705780 + leucyl-tRNA synthetase KEGG: dvl:Dvul_1861 leucyl-tRNA synthetase~TIGRFAM: leucyl-tRNA synthetase gene gene710 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0688 Amico_0689 Amico_0689 Amico_0689 705780 706718 + DNA polymerase III delta PFAM: DNA polymerase III delta gene gene711 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0689 Amico_0690 Amico_0690 Amico_0690 706781 707071 - ribosomal protein S20 KEGG: afr:AFE_2188 ribosomal protein S20~TIGRFAM: ribosomal protein S20~PFAM: ribosomal protein S20 gene gene712 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0690 Amico_0691 Amico_0691 Amico_0691 707170 709137 + helicase c2 SMART: helicase c2%3B DEAD-like helicase~KEGG: mxa:MXAN_6717 putative ATP-dependent helicase gene gene713 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0691 Amico_0692 Amico_0692 Amico_0692 709373 709744 + ribonuclease P protein component TIGRFAM: ribonuclease P protein component~KEGG: dps:DP0854 ribonuclease P%2C protein component gene gene714 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0692 Amico_0693 Amico_0693 Amico_0693 709751 710011 + protein of unknown function DUF37 PFAM: protein of unknown function DUF37~KEGG: afr:AFE_0033 conserved hypothetical protein TIGR00278 gene gene715 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0693 Amico_0694 Amico_0694 Amico_0694 710026 710817 + membrane protein insertase%2C YidC/Oxa1 family KEGG: sfu:Sfum_2597 60 kDa inner membrane insertion protein~TIGRFAM: membrane protein insertase%2C YidC/Oxa1 family~PFAM: 60 kDa inner membrane insertion protein gene gene716 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0694 Amico_0695 Amico_0695 Amico_0695 710859 711491 + single-stranded nucleic acid binding R3H domain protein KEGG: sfu:Sfum_2598 single-stranded nucleic acid binding R3H domain-containing protein~PFAM: single-stranded nucleic acid binding R3H domain protein~SMART: single-stranded nucleic acid binding R3H domain protein gene gene717 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0695 Amico_0696 Amico_0696 Amico_0696 711570 712274 + prolipoprotein diacylglyceryl transferase PFAM: prolipoprotein diacylglyceryl transferase~KEGG: gur:Gura_2042 prolipoprotein diacylglyceryl transferase gene gene718 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0696 Amico_0697 Amico_0697 Amico_0697 712353 713747 + protease Do SMART: PDZ/DHR/GLGF domain protein~TIGRFAM: protease Do~KEGG: gbm:Gbem_0244 protease Do~PFAM: peptidase S1 and S6 chymotrypsin/Hap%3B PDZ/DHR/GLGF domain protein gene gene719 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0697 Amico_0698 Amico_0698 Amico_0698 713827 714930 - integral membrane sensor signal transduction histidine kinase KEGG: gme:Gmet_1027 histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein gene gene720 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0698 Amico_0699 Amico_0699 Amico_0699 714961 715641 - two component transcriptional regulator%2C winged helix family KEGG: gsu:GSU2946 DNA-binding heavy metal response regulator~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene721 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0699 Amico_0700 Amico_0700 Amico_0700 715900 716166 + ribosomal protein S15 KEGG: dal:Dalk_4742 ribosomal protein S15~TIGRFAM: ribosomal protein S15~PFAM: ribosomal protein S15 gene gene722 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0700 Amico_0701 Amico_0701 Amico_0701 716301 718547 + polyribonucleotide nucleotidyltransferase SMART: KH domain protein~TIGRFAM: polyribonucleotide nucleotidyltransferase~KEGG: sfu:Sfum_1234 polynucleotide phosphorylase/polyadenylase~PFAM: 3' exoribonuclease%3B RNA binding S1 domain protein%3B Polynucleotide phosphorylase%2C phosphorolytic RNA- binding%2C bacterial/organelle-type%3B Exoribonuclease%2C phosphorolytic domain 2%3B K Homology%2C type 1%2C subgroup gene gene723 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0701 Amico_0702 Amico_0702 Amico_0702 718544 718984 + deoxyuridine 5'-triphosphate nucleotidohydrolase Dut TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut~KEGG: gur:Gura_1908 deoxyuridine 5'-triphosphate nucleotidohydrolase~PFAM: deoxyUTP pyrophosphatase gene gene724 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0702 Amico_0703 Amico_0703 Amico_0703 719304 721205 + threonyl-tRNA synthetase TIGRFAM: threonyl-tRNA synthetase~KEGG: gme:Gmet_1411 threonyl-tRNA synthetase / Ser- tRNA(Thr) hydrolase~PFAM: tRNA synthetase class II (G H P and S)%3B Anticodon-binding domain protein%3B Threonyl/alanyl tRNA synthetase SAD gene gene725 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0703 Amico_0704 Amico_0704 Amico_0704 721441 721977 + translation initiation factor IF-3 KEGG: dma:DMR_10600 translation initiation factor IF-3~TIGRFAM: translation initiation factor IF-3~PFAM: Translation initiation factor 3-like gene gene726 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0704 Amico_0705 Amico_0705 Amico_0705 722047 722244 + ribosomal protein L35 KEGG: dal:Dalk_1799 ribosomal protein L35~TIGRFAM: ribosomal protein L35~PFAM: ribosomal protein L35 gene gene727 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0705 Amico_0706 Amico_0706 Amico_0706 722299 722658 + ribosomal protein L20 KEGG: nmu:Nmul_A0490 50S ribosomal protein L20~TIGRFAM: ribosomal protein L20~PFAM: ribosomal protein L20 gene gene728 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0706 Amico_0707 Amico_0707 Amico_0707 722661 723980 + H(+)-transporting two-sector ATPase KEGG: pca:Pcar_0086 TrkH family potassium uptake protein~PFAM: cation transporter gene gene729 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0707 Amico_0708 Amico_0708 Amico_0708 723994 724689 + TrkA-N domain protein PFAM: TrkA-N domain protein%3B TrkA-C domain protein~KEGG: dat:HRM2_16330 TrkA2 gene gene730 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0708 Amico_0709 Amico_0709 Amico_0709 724686 725732 + phenylalanyl-tRNA synthetase%2C alpha subunit TIGRFAM: phenylalanyl-tRNA synthetase%2C alpha subunit~KEGG: pmy:Pmen_1980 phenylalanyl-tRNA synthetase subunit alpha~PFAM: phenylalanyl-tRNA synthetase class IIc%3B aminoacyl tRNA synthetase class II domain protein gene gene731 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0709 Amico_0710 Amico_0710 Amico_0710 725726 728131 + phenylalanyl-tRNA synthetase%2C beta subunit TIGRFAM: phenylalanyl-tRNA synthetase%2C beta subunit~KEGG: mxa:MXAN_3595 phenylalanyl-tRNA synthetase subunit beta gene gene732 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0710 Amico_0711 Amico_0711 Amico_0711 728162 728461 + conserved hypothetical protein KEGG: hypothetical protein gene gene733 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0711 Amico_0712 Amico_0712 Amico_0712 728479 728736 + hypothetical protein gene gene734 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0712 Amico_0713 Amico_0713 Amico_0713 728733 729245 + Colicin V production protein PFAM: Colicin V production protein~KEGG: dvl:Dvul_1872 colicin V production protein gene gene735 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0713 Amico_0714 Amico_0714 Amico_0714 729232 731583 + MutS2 family protein TIGRFAM: MutS2 family protein~PFAM: Smr protein/MutS2%3B DNA mismatch repair protein MutS domain protein~KEGG: gem:GM21_1412 MutS2 family protein~SMART: DNA mismatch repair protein MutS domain protein%3B Smr protein/MutS2%3B MutS III domain protein gene gene736 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0714 Amico_0715 Amico_0715 Amico_0715 732163 733086 + glutamate formiminotransferase TIGRFAM: glutamate formiminotransferase~KEGG: sat:SYN_00461 glutamate formiminotransferase~PFAM: Formiminotransferase domain protein%3B Formiminotransferase domain protein gene gene738 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0715 Amico_0716 Amico_0716 Amico_0716 733148 733927 + transcriptional regulator%2C IclR family KEGG: spt:SPA4025 transcriptional repressor IclR~PFAM: regulatory protein IclR%3B Transcriptional regulator IclR~SMART: regulatory protein IclR gene gene739 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0716 Amico_0717 Amico_0717 Amico_0717 733997 734272 + pseudogene gene740 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0717 Amico_0718 Amico_0718 Amico_0718 734635 736005 + Na+/solute symporter PFAM: Na+/solute symporter~KEGG: ppd:Ppro_1337 Na+/solute symporter gene gene741 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0718 Amico_0719 Amico_0719 Amico_0719 736011 737186 + pseudogene gene742 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0719 Amico_0720 Amico_0720 Amico_0720 737270 738235 - TRAP transporter solute receptor%2C TAXI family TIGRFAM: TRAP transporter solute receptor%2C TAXI family~KEGG: bms:BR1194 TRAP transporter solute receptor TAXI family protein gene gene743 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0720 Amico_0721 Amico_0721 Amico_0721 738490 739038 + HutP family protein PFAM: HutP family protein~KEGG: efe:EFER_3137 hypothetical protein gene gene744 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0721 Amico_0722 Amico_0722 Amico_0722 739119 739358 + ribosomal protein L31 KEGG: cff:CFF8240_0287 50S ribosomal protein L31~TIGRFAM: ribosomal protein L31~PFAM: ribosomal protein L31 gene gene745 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0722 Amico_0723 Amico_0723 Amico_0723 739419 740114 + thymidylate synthase%2C flavin-dependent TIGRFAM: thymidylate synthase%2C flavin-dependent~KEGG: ppd:Ppro_2649 FAD-dependent thymidylate synthase~PFAM: thymidylate synthase complementing protein ThyX gene gene746 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0723 Amico_0724 Amico_0724 Amico_0724 740117 741061 + protein of unknown function DUF1385 PFAM: protein of unknown function DUF1385~KEGG: ppd:Ppro_2648 hypothetical protein gene gene747 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0724 Amico_0725 Amico_0725 Amico_0725 741045 742121 + peptide chain release factor 1 KEGG: gem:GM21_3804 peptide chain release factor 1~TIGRFAM: peptide chain release factor 1~PFAM: Class I peptide chain release factor%3B PCRF domain protein gene gene748 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0725 Amico_0726 Amico_0726 Amico_0726 742108 742968 + protein-(glutamine-N5) methyltransferase%2C release factor-specific KEGG: gsu:GSU3103 HemK family modification methylase~TIGRFAM: protein-(glutamine-N5) methyltransferase%2C release factor-specific%3B modification methylase%2C HemK family~PFAM: methyltransferase small gene gene749 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0726 Amico_0727 Amico_0727 Amico_0727 743051 744238 + thioredoxin reductase KEGG: dds:Ddes_0114 thioredoxin reductase~TIGRFAM: thioredoxin reductase~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B FAD dependent oxidoreductase gene gene750 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0727 Amico_0728 Amico_0728 Amico_0728 744304 745236 + 1-phosphofructokinase KEGG: csa:Csal_2647 PfkB~TIGRFAM: 1-phosphofructokinase~PFAM: PfkB domain protein gene gene751 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0728 Amico_0729 Amico_0729 Amico_0729 745251 745703 + CBS domain containing membrane protein KEGG: hypothetical protein~PFAM: CBS domain containing protein~SMART: CBS domain containing protein gene gene752 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0729 Amico_0730 Amico_0730 Amico_0730 745772 746851 + peptidase M48 Ste24p PFAM: peptidase M48 Ste24p~KEGG: sat:SYN_03195 zinc metalloprotease gene gene753 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0730 Amico_0731 Amico_0731 Amico_0731 746942 748606 + DNA polymerase III%2C subunits gamma and tau SMART: AAA ATPase~TIGRFAM: DNA polymerase III%2C subunits gamma and tau~KEGG: bba:Bd3731 DNA polymerase III gamma and tau subunits~PFAM: AAA ATPase central domain protein gene gene754 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0731 Amico_0732 Amico_0732 Amico_0732 748603 752037 + DNA polymerase III%2C alpha subunit TIGRFAM: DNA polymerase III%2C alpha subunit~PFAM: DNA polymerase III alpha subunit%3B PHP domain protein%3B nucleic acid binding OB-fold tRNA/helicase-type~KEGG: gur:Gura_2507 DNA polymerase III%2C alpha subunit~SMART: phosphoesterase PHP domain protein gene gene755 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0732 Amico_0733 Amico_0733 Amico_0733 752034 753827 + pyruvate kinase KEGG: dps:DP3116 pyruvate kinase~TIGRFAM: pyruvate kinase~PFAM: Pyruvate kinase barrel%3B PEP-utilising protein mobile region%3B HpcH/HpaI aldolase%3B Pyruvate kinase alpha/beta gene gene756 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0733 Amico_0734 Amico_0734 Amico_0734 753841 754446 + NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: pin:Ping_0696 nucleotide phosphate derivative pyrophosphohydrolases%2C MutT/NUDIX family protein gene gene757 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0734 Amico_0735 Amico_0735 Amico_0735 754437 755279 + apurinic endonuclease Apn1 SMART: AP endonuclease family 2~TIGRFAM: apurinic endonuclease Apn1~KEGG: glo:Glov_3584 apurinic endonuclease Apn1~PFAM: Xylose isomerase domain protein TIM barrel gene gene758 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0735 Amico_0736 Amico_0736 Amico_0736 755287 756363 + alanine racemase domain protein PFAM: alanine racemase domain protein~KEGG: mlo:mlr5700 hypothetical protein gene gene759 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0736 Amico_0737 Amico_0737 Amico_0737 756384 757193 + protein of unknown function DUF147 PFAM: protein of unknown function DUF147~KEGG: dps:DP1639 hypothetical protein gene gene760 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0737 Amico_0738 Amico_0738 Amico_0738 757220 758446 + YbbR family protein PFAM: YbbR family protein~KEGG: pca:Pcar_1000 hypothetical protein gene gene761 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0738 Amico_0739 Amico_0739 Amico_0739 758464 759840 + phosphoglucosamine mutase TIGRFAM: phosphoglucosamine mutase~KEGG: bcs:BCAN_A1730 phosphoglucosamine mutase~PFAM: phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I%3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain III%3B phosphoglucomutase/phosphomannomutase %3B phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain II gene gene762 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0739 Amico_0740 Amico_0740 Amico_0740 759874 760758 + UTP-glucose-1-phosphate uridylyltransferase KEGG: pnu:Pnuc_1717 UTP-glucose-1-phosphate uridylyltransferase GalU~TIGRFAM: UTP-glucose-1-phosphate uridylyltransferase~PFAM: Nucleotidyl transferase gene gene763 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0740 Amico_0741 Amico_0741 Amico_0741 760985 762817 + glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing KEGG: gme:Gmet_0104 glucosamine--fructose-6- phosphate aminotransferase~TIGRFAM: glucosamine/fructose-6-phosphate aminotransferase%2C isomerizing~PFAM: glutamine amidotransferase class-II%3B sugar isomerase (SIS) gene gene764 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0741 Amico_0742 Amico_0742 Amico_0742 762858 763922 - hypothetical protein gene gene765 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0742 Amico_0743 Amico_0743 Amico_0743 763996 765729 + adenine deaminase TIGRFAM: adenine deaminase~KEGG: dma:DMR_21960 adenine deaminase~PFAM: amidohydrolase gene gene766 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0743 Amico_0744 Amico_0744 Amico_0744 765700 765960 - hypothetical protein gene gene767 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0744 Amico_0745 Amico_0745 Amico_0745 766281 767684 + UDP-N-acetylglucosamine pyrophosphorylase KEGG: tgr:Tgr7_3303 UDP-N-acetylglucosamine pyrophosphorylase / diamine N-acetyltransferase~TIGRFAM: UDP-N-acetylglucosamine pyrophosphorylase~PFAM: Nucleotidyl transferase%3B transferase hexapeptide repeat containing protein gene gene769 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0745 Amico_0746 Amico_0746 Amico_0746 767684 768652 + ribose-phosphate pyrophosphokinase TIGRFAM: ribose-phosphate pyrophosphokinase~KEGG: gur:Gura_3682 ribose-phosphate pyrophosphokinase~PFAM: phosphoribosyltransferase gene gene770 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0746 Amico_0747 Amico_0747 Amico_0747 768703 769356 + ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5 KEGG: prw:PsycPRwf_2106 50S ribosomal protein L25/general stress protein Ctc~TIGRFAM: ribosomal 5S rRNA E-loop binding protein Ctc/L25/TL5~PFAM: Ribosomal protein L25-like gene gene771 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0747 Amico_0748 Amico_0748 Amico_0748 769363 769953 + peptidyl-tRNA hydrolase TIGRFAM: peptidyl-tRNA hydrolase~KEGG: geo:Geob_1568 aminoacyl-tRNA hydrolase~PFAM: peptidyl-tRNA hydrolase gene gene772 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0748 Amico_0749 Amico_0749 Amico_0749 770075 773152 + DEAD/DEAH box helicase domain protein KEGG: gbm:Gbem_0214 transcription-repair coupling factor~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein%3B transcription factor CarD%3B TRCF domain protein%3B type III restriction protein res subunit~SMART: DEAD-like helicase %3B helicase domain protein gene gene773 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0749 Amico_0750 Amico_0750 Amico_0750 773155 774000 + MazG family protein KEGG: ppd:Ppro_2489 nucleoside triphosphate pyrophosphohydrolase~TIGRFAM: MazG family protein~PFAM: MazG nucleotide pyrophosphohydrolase gene gene774 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0750 Amico_0751 Amico_0751 Amico_0751 774097 775494 + Conserved carboxylase region PFAM: Conserved carboxylase region%3B pyruvate carboxyltransferase~KEGG: hch:HCH_06704 pyruvate carboxylase subunit B gene gene775 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0751 Amico_0752 Amico_0752 Amico_0752 775511 776509 + PhoH family protein PFAM: PhoH family protein~KEGG: pca:Pcar_1231 putative ATP-binding protein in pho regulon gene gene776 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0752 Amico_0753 Amico_0753 Amico_0753 776481 778601 + metal dependent phosphohydrolase TIGRFAM: metal dependent phophohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain~KEGG: gme:Gmet_2371 metal dependent phosphohydrolase~SMART: metal-dependent phosphohydrolase HD region gene gene777 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0753 Amico_0754 Amico_0754 Amico_0754 778605 779141 + protein of unknown function UPF0054 PFAM: protein of unknown function UPF0054~KEGG: eic:NT01EI_2926 hypothetical protein gene gene778 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0754 Amico_0755 Amico_0755 Amico_0755 779144 780430 + protein of unknown function DUF21 KEGG: dal:Dalk_3618 protein of unknown function DUF21~PFAM: protein of unknown function DUF21%3B CBS domain containing protein%3B transporter-associated region~SMART: CBS domain containing protein gene gene779 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0755 Amico_0756 Amico_0756 Amico_0756 780417 780860 + cytidine deaminase KEGG: cdd-2%3B CytiDine Deaminase %3B K01489 cytidine deaminase~TIGRFAM: cytidine deaminase~PFAM: CMP/dCMP deaminase zinc-binding gene gene780 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0756 Amico_0757 Amico_0757 Amico_0757 780857 781783 + GTP-binding protein Era KEGG: gme:Gmet_2315 GTP-binding protein Era~TIGRFAM: GTP-binding protein Era%3B small GTP-binding protein~PFAM: GTP-binding protein HSR1-related%3B KH type 2 domain protein gene gene781 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0757 Amico_0758 Amico_0758 Amico_0758 781793 782521 + DNA repair protein RecO KEGG: sfu:Sfum_3482 recombination protein O%2C RecO~TIGRFAM: DNA repair protein RecO~PFAM: Recombination protein O RecO gene gene782 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0758 Amico_0759 Amico_0759 Amico_0759 782575 783453 + glycyl-tRNA synthetase%2C alpha subunit TIGRFAM: glycyl-tRNA synthetase%2C alpha subunit~KEGG: sat:SYN_01536 glycyl-tRNA synthetase subunit alpha~PFAM: glycyl-tRNA synthetase alpha subunit gene gene783 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0759 Amico_0760 Amico_0760 Amico_0760 783476 785539 + glycyl-tRNA synthetase%2C beta subunit TIGRFAM: glycyl-tRNA synthetase%2C beta subunit~KEGG: gbm:Gbem_0642 glycyl-tRNA synthetase%2C beta subunit gene gene784 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0760 Amico_0761 Amico_0761 Amico_0761 785550 786353 + protein of unknown function DUF299 PFAM: protein of unknown function DUF299~KEGG: gsu:GSU0450 hypothetical protein gene gene785 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0761 Amico_0762 Amico_0762 Amico_0762 786359 787174 + protein of unknown function DUF299 PFAM: protein of unknown function DUF299~KEGG: pca:Pcar_2438 hypothetical protein gene gene786 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0762 Amico_0763 Amico_0763 Amico_0763 787212 789878 + pyruvate%2C phosphate dikinase TIGRFAM: pyruvate%2C phosphate dikinase~KEGG: pin:Ping_2762 pyruvate phosphate dikinase~PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding%3B PEP-utilising protein mobile region%3B PEP- utilizing protein gene gene787 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0763 Amico_0764 Amico_0764 Amico_0764 789894 792269 + phosphoenolpyruvate synthase KEGG: phosphoenolpyruvate synthase %3B K01007 pyruvate%2C water dikinase~TIGRFAM: phosphoenolpyruvate synthase~PFAM: pyruvate phosphate dikinase PEP/pyruvate- binding%3B PEP-utilising protein mobile region%3B PEP- utilizing protein gene gene788 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0764 Amico_0765 Amico_0765 Amico_0765 792353 794677 - penicillin-binding protein%2C 1A family KEGG: sat:SYN_00304 multimodular transpeptidase- transglycosylase~TIGRFAM: penicillin-binding protein%2C 1A family~PFAM: glycosyl transferase family 51%3B penicillin- binding protein transpeptidase gene gene789 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0765 Amico_0766 Amico_0766 Amico_0766 800183 801781 + type II secretion system protein E KEGG: bph:Bphy_3071 general secretory pathway protein E~PFAM: type II secretion system protein E~SMART: AAA ATPase gene gene795 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0766 Amico_0767 Amico_0767 Amico_0767 801798 802988 + Type II secretion system F domain protein PFAM: Type II secretion system F domain~KEGG: vsp:VS_0137 type II secretory pathway%2C component EpsF gene gene796 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0767 Amico_0768 Amico_0768 Amico_0768 803004 803453 + hypothetical protein KEGG: vfi:VF_A0875 toxin coregulated pilin subunit precursor TcpA gene gene797 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0768 Amico_0769 Amico_0769 Amico_0769 803450 803770 + hypothetical protein gene gene798 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0769 Amico_0770 Amico_0770 Amico_0770 803745 804599 + hypothetical protein gene gene799 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0770 Amico_0771 Amico_0771 Amico_0771 804617 805039 + hypothetical protein gene gene800 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0771 Amico_0772 Amico_0772 Amico_0772 805061 805960 + hypothetical protein KEGG: gur:Gura_1810 type IV pilus assembly protein PilM gene gene801 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0772 Amico_0773 Amico_0773 Amico_0773 805945 806481 + hypothetical protein gene gene802 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0773 Amico_0774 Amico_0774 Amico_0774 806484 806993 + hypothetical protein gene gene803 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0774 Amico_0775 Amico_0775 Amico_0775 806986 807528 + hypothetical protein gene gene804 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0775 Amico_0776 Amico_0776 Amico_0776 807521 809191 + type II and III secretion system protein PFAM: type II and III secretion system protein%3B NolW domain protein~KEGG: net:Neut_1803 type IV pilus secretin PilQ gene gene805 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0776 Amico_0777 Amico_0777 Amico_0777 809628 811040 + tRNA(Ile)-lysidine synthetase KEGG: dol:Dole_0068 tRNA(Ile)-lysidine synthetase~TIGRFAM: tRNA(Ile)-lysidine synthetase~PFAM: PP-loop domain protein gene gene809 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0777 Amico_0778 Amico_0778 Amico_0778 811042 811620 + hypoxanthine phosphoribosyltransferase TIGRFAM: hypoxanthine phosphoribosyltransferase~KEGG: sat:SYN_02450 hypoxanthine-guanine phosphoribosyltransferase~PFAM: phosphoribosyltransferase gene gene810 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0778 Amico_0779 Amico_0779 Amico_0779 811620 813539 + ATP-dependent metalloprotease FtsH SMART: AAA ATPase~TIGRFAM: ATP-dependent metalloprotease FtsH~KEGG: gsu:GSU1809 cell division protein FtsH~PFAM: peptidase M41%3B peptidase M41 FtsH extracellular%3B AAA ATPase central domain protein%3B ATPase associated with various cellular activities AAA_5 gene gene811 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0779 Amico_0780 Amico_0780 Amico_0780 813645 815693 + excinuclease ABC%2C B subunit TIGRFAM: excinuclease ABC%2C B subunit~PFAM: helicase domain protein%3B UvrB/UvrC protein~KEGG: sfu:Sfum_0801 excinuclease ABC subunit B~SMART: DEAD-like helicase %3B helicase domain protein gene gene812 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0780 Amico_0781 Amico_0781 Amico_0781 815698 818460 + excinuclease ABC%2C A subunit KEGG: pca:Pcar_0087 excinuclease ABC%2C A subunit~TIGRFAM: excinuclease ABC%2C A subunit~PFAM: ABC transporter related gene gene813 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0781 Amico_0782 Amico_0782 Amico_0782 818438 819334 + RNA methyltransferase%2C TrmH family%2C group 3 KEGG: avn:Avin_07630 RNA methyltransferase TrmH%2C group 3~TIGRFAM: RNA methyltransferase%2C TrmH family%2C group 3~PFAM: tRNA/rRNA methyltransferase (SpoU)%3B RNA 2-O ribose methyltransferase substrate binding gene gene814 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0782 Amico_0783 Amico_0783 Amico_0783 819324 820139 + pyrroline-5-carboxylate reductase TIGRFAM: pyrroline-5-carboxylate reductase~KEGG: GSVIVT00000690001%3B hypothetical protein LOC100258887 %3B K00286 pyrroline-5-carboxylate reductase~PFAM: NADP oxidoreductase coenzyme F420-dependent%3B Ketopantoate reductase ApbA/PanE domain protein%3B NAD- dependent glycerol-3-phosphate dehydrogenase domain protein%3B 6-phosphogluconate dehydrogenase NAD-binding gene gene815 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0783 Amico_0784 Amico_0784 Amico_0784 821343 822293 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: dde:Dde_1184 dipeptide ABC transporter%2C permease protein gene gene817 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0784 Amico_0785 Amico_0785 Amico_0785 822299 823210 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: oan:Oant_0628 binding-protein-dependent transport systems inner membrane component gene gene818 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0785 Amico_0786 Amico_0786 Amico_0786 823238 824194 + oligopeptide/dipeptide ABC transporter%2C ATPase subunit TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~KEGG: sfu:Sfum_3545 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~SMART: AAA ATPase gene gene819 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0786 Amico_0787 Amico_0787 Amico_0787 824281 825240 + oligopeptide/dipeptide ABC transporter%2C ATPase subunit TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~KEGG: bja:blr1357 peptide ABC transporter ATP- binding protein~SMART: AAA ATPase gene gene820 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0787 Amico_0788 Amico_0788 Amico_0788 825325 826842 + extracellular solute-binding protein family 5 PFAM: extracellular solute-binding protein family 5~KEGG: vap:Vapar_3003 extracellular solute-binding protein family 5 gene gene821 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0788 Amico_0789 Amico_0789 Amico_0789 826933 827976 - beta-lactamase PFAM: beta-lactamase~KEGG: lpc:LPC_0576 serine-type D-Ala-D-Ala carboxypeptidase gene gene822 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0789 Amico_0790 Amico_0790 Amico_0790 828286 828669 + 4'-phosphopantetheinyl transferase PFAM: 4'-phosphopantetheinyl transferase~KEGG: vok:COSY_0563 holo-[acyl-carrier protein] synthase gene gene823 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0790 Amico_0791 Amico_0791 Amico_0791 828653 830179 + carbohydrate kinase%2C YjeF related protein KEGG: dat:HRM2_35850 hypothetical protein~TIGRFAM: carbohydrate kinase%2C YjeF related protein~PFAM: YjeF-family domain protein%3B protein of unknown function UPF0031 gene gene824 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0791 Amico_0792 Amico_0792 Amico_0792 830176 830676 + protein of unknown function UPF0079 PFAM: protein of unknown function UPF0079~KEGG: gme:Gmet_1881 hypothetical protein gene gene825 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0792 Amico_0793 Amico_0793 Amico_0793 830673 831398 + peptidase M22 glycoprotease PFAM: peptidase M22 glycoprotease~KEGG: dol:Dole_1857 peptidase M22 glycoprotease gene gene826 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0793 Amico_0794 Amico_0794 Amico_0794 831568 831777 + 4Fe-4S ferredoxin iron-sulfur binding domain protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: dal:Dalk_2714 4Fe-4S ferredoxin iron-sulfur binding domain protein gene gene827 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0794 Amico_0795 Amico_0795 Amico_0795 831770 832903 + pyruvate flavodoxin/ferredoxin oxidoreductase domain protein PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein~KEGG: pca:Pcar_1030 2-oxoglutarate ferredoxin oxidoreductase subunit alpha gene gene828 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0795 Amico_0796 Amico_0796 Amico_0796 832904 833731 + thiamine pyrophosphate protein domain protein TPP-binding protein PFAM: thiamine pyrophosphate protein domain protein TPP-binding~KEGG: geo:Geob_2667 thiamine pyrophosphate protein domain protein TPP-binding gene gene829 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0796 Amico_0797 Amico_0797 Amico_0797 833724 834284 + Pyruvate/ketoisovalerate oxidoreductase PFAM: Pyruvate/ketoisovalerate oxidoreductase~KEGG: pca:Pcar_1028 putative 2-oxoacid:ferredoxin oxidoreductase%2C gamma subunit gene gene830 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0797 Amico_0798 Amico_0798 Amico_0798 834423 834773 + hypothetical protein KEGG: dal:Dalk_0136 hypothetical protein gene gene831 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0798 Amico_0799 Amico_0799 Amico_0799 834839 836014 + sodium/hydrogen exchanger PFAM: sodium/hydrogen exchanger~KEGG: dps:DP0306 Na+/H+ antiporter protein gene gene832 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0799 Amico_0800 Amico_0800 Amico_0800 836093 837487 + RNA methyltransferase%2C TrmA family TIGRFAM: RNA methyltransferase%2C TrmA family~KEGG: tau:Tola_2631 RNA methyltransferase%2C TrmA family~PFAM: (Uracil-5)-methyltransferase%3B deoxyribonuclease/rho motif-related TRAM gene gene833 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0800 Amico_0801 Amico_0801 Amico_0801 838128 838454 + hypothetical protein KEGG: predicted protein gene gene835 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0801 Amico_0802 Amico_0802 Amico_0802 838441 840447 + V-type ATPase 116 kDa subunit PFAM: V-type ATPase 116 kDa subunit~KEGG: gur:Gura_0418 H(+)-transporting two-sector ATPase gene gene836 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0802 Amico_0803 Amico_0803 Amico_0803 840489 840965 + H+transporting two-sector ATPase C subunit PFAM: H+transporting two-sector ATPase C subunit~KEGG: dal:Dalk_4310 ATP synthase F0%2C C subunit gene gene837 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0803 Amico_0804 Amico_0804 Amico_0804 840990 841571 + H+transporting two-sector ATPase E subunit PFAM: H+transporting two-sector ATPase E subunit gene gene838 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0804 Amico_0805 Amico_0805 Amico_0805 841589 842599 + H+transporting two-sector ATPase C (AC39) subunit PFAM: H+transporting two-sector ATPase C (AC39) subunit~KEGG: VAT3%3B vacuolar proton pump D subunit%3B K02146 V-type H+-transporting ATPase subunit AC39 gene gene839 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0805 Amico_0806 Amico_0806 Amico_0806 842592 842930 + Vacuolar H+transporting two-sector ATPase F subunit PFAM: Vacuolar H+transporting two-sector ATPase F subunit gene gene840 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0806 Amico_0807 Amico_0807 Amico_0807 842957 844753 + H(+)-transporting two-sector ATPase PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B H+transporting two-sector ATPase alpha/beta subunit domain protein~KEGG: hypothetical protein LOC100137685~SMART: AAA ATPase gene gene841 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0807 Amico_0808 Amico_0808 Amico_0808 844743 846164 + H(+)-transporting two-sector ATPase KEGG: ATPvB%3B vacuolar ATP synthase subunit B %3B K02147 V-type H+-transporting ATPase subunit B~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B HerA-ATP synthase%2C barrel domain%3B H+transporting two-sector ATPase alpha/beta subunit domain protein gene gene842 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0808 Amico_0809 Amico_0809 Amico_0809 846180 846803 + V-type ATPase%2C D subunit KEGG: expressed hypothetical protein %3B K02149 V- type H+-transporting ATPase subunit D~TIGRFAM: V-type ATPase%2C D subunit~PFAM: H+transporting two-sector ATPase D subunit gene gene843 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0809 Amico_0810 Amico_0810 Amico_0810 847362 847787 + MraZ protein KEGG: pen:PSEEN4494 cell division protein MraZ~TIGRFAM: MraZ protein~PFAM: MraZ domain gene gene845 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0810 Amico_0811 Amico_0811 Amico_0811 847787 848689 + S-adenosyl-methyltransferase MraW KEGG: gme:Gmet_0404 methyltransferase~TIGRFAM: S-adenosyl-methyltransferase MraW~PFAM: methyltransferase gene gene846 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0811 Amico_0812 Amico_0812 Amico_0812 848722 849138 + hypothetical protein gene gene847 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0812 Amico_0813 Amico_0813 Amico_0813 849187 850845 + Peptidoglycan glycosyltransferase KEGG: gsu:GSU3075 penicillin-binding protein~PFAM: penicillin-binding protein transpeptidase%3B Penicillin-binding protein dimerisation domain gene gene848 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0813 Amico_0814 Amico_0814 Amico_0814 850880 852382 + UDP-N-acetylmuramyl-tripeptide synthetase KEGG: gur:Gura_3979 UDP-N-acetylmuramoylalanyl-D- glutamate--2%2C6-diaminopimelate ligase~TIGRFAM: UDP-N-acetylmuramyl-tripeptide synthetase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein gene gene849 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0814 Amico_0815 Amico_0815 Amico_0815 852384 853790 + UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-diamin opimelate/D-alanyl-D-alanylligase KEGG: dol:Dole_2791 UDP-N-acetylmuramoylalanyl-D- glutamyl-2%2C6-diaminopimelate--D-alanyl- D-alanyl ligase~TIGRFAM:UDP-N-acetylmuramoylalanyl-D-glutamyl-2%2C6-di aminopimelate/D-alanyl-D-alanylligase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein gene gene850 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0815 Amico_0816 Amico_0816 Amico_0816 853787 854734 + Phospho-N-acetylmuramoyl-pentapeptide-transferase KEGG: bba:Bd3201 phospho-N-acetylmuramoyl- pentapeptide-transferase~PFAM: Glycosyl transferase%2C family 4%2C conserved region%3B Phospho-N-acetylmuramoyl-pentapeptide transferase%2C conserved site gene gene851 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0816 Amico_0817 Amico_0817 Amico_0817 854767 856140 + UDP-N-acetylmuramoylalanine/D-glutamate ligase KEGG: gur:Gura_3976 UDP-N-acetylmuramoylalanine--D- glutamate ligase~TIGRFAM: UDP-N-acetylmuramoylalanine/D-glutamate ligase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein gene gene852 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0817 Amico_0818 Amico_0818 Amico_0818 856137 857237 + cell cycle protein PFAM: cell cycle protein~KEGG: gem:GM21_0507 cell division protein FtsW gene gene853 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0818 Amico_0819 Amico_0819 Amico_0819 857234 858322 + Undecaprenyldiphospho-muramoylpentapeptidebeta-N -acetylglucosaminyltransferase KEGG: swd:Swoo_4533 undecaprenyldiphospho- muramoylpentapeptide beta-N-acetylglucosaminyltransferase~PFAM: glycosyl transferase family 28%3B Glycosyltransferase 28 domain gene gene854 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0819 Amico_0820 Amico_0820 Amico_0820 858323 859738 + UDP-N-acetylmuramate/alanine ligase KEGG: dol:Dole_2786 UDP-N-acetylmuramate--alanine ligase~TIGRFAM: UDP-N-acetylmuramate/alanine ligase~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein gene gene855 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0820 Amico_0821 Amico_0821 Amico_0821 859742 860641 + UDP-N-acetylenolpyruvoylglucosamine reductase TIGRFAM: UDP-N-acetylenolpyruvoylglucosamine reductase~KEGG: dol:Dole_2785 UDP-N- acetylenolpyruvoylglucosamine reductase~PFAM: UDP-N-acetylenolpyruvoylglucosamine reductase domain protein%3B FAD linked oxidase domain protein gene gene856 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0821 Amico_0822 Amico_0822 Amico_0822 860672 861442 + hypothetical protein gene gene857 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0822 Amico_0823 Amico_0823 Amico_0823 861477 862793 + cell division protein FtsA KEGG: afr:AFE_0201 cell division protein FtsA~TIGRFAM: cell division protein FtsA~PFAM: cell division protein FtsA gene gene858 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0823 Amico_0824 Amico_0824 Amico_0824 862816 863979 + cell division protein FtsZ KEGG: plastid division protein FtsZ (AB032072) %3B K03531 cell division protein FtsZ~TIGRFAM: cell division protein FtsZ~PFAM: Tubulin/FtsZ GTPase%3B Tubulin/FtsZ%2C 2-layer sandwich domain gene gene859 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0824 Amico_0825 Amico_0825 Amico_0825 864087 864758 + Sporulation domain protein PFAM: Sporulation domain protein~KEGG: xca:xccb100_3401 hypothetical protein gene gene860 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0825 Amico_0826 Amico_0826 Amico_0826 864774 866000 + molybdenum cofactor synthesis domain protein KEGG: dat:HRM2_02690 MoeA1~TIGRFAM: molybdenum cofactor synthesis domain protein~PFAM: MoeA domain protein domain I and II%3B MoeA domain protein domain IV%3B molybdopterin binding domain gene gene861 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0826 Amico_0827 Amico_0827 Amico_0827 865994 867901 + molybdenum cofactor synthesis domain protein KEGG: dps:DP2475 molybdopterin biosynthesis protein (MoeA)~TIGRFAM: molybdenum cofactor synthesis domain protein~PFAM: molybdopterin binding domain%3B MoeA domain protein domain I and II%3B MoeA domain protein domain IV gene gene862 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0827 Amico_0828 Amico_0828 Amico_0828 867889 868866 + molybdenum cofactor biosynthesis protein A TIGRFAM: molybdenum cofactor biosynthesis protein A~PFAM: Radical SAM domain protein%3B molybdenum cofactor synthesis domain protein~KEGG: dma:DMR_24480 molybdenum cofactor biosynthesis protein A~SMART: Elongator protein 3/MiaB/NifB gene gene863 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0828 Amico_0829 Amico_0829 Amico_0829 868873 869364 + molybdenum cofactor biosynthesis protein C KEGG: hap:HAPS_0437 molybdenum cofactor biosynthesis protein C~TIGRFAM: molybdenum cofactor biosynthesis protein C~PFAM: molybdopterin cofactor biosynthesis MoaC region gene gene864 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0829 Amico_0830 Amico_0830 Amico_0830 869493 870176 + molybdenum cofactor synthesis domain protein KEGG: geo:Geob_3732 molybdenum cofactor synthesis domain protein~TIGRFAM: molybdenum cofactor synthesis domain protein~PFAM: molybdopterin binding domain gene gene865 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0830 Amico_0831 Amico_0831 Amico_0831 870166 871056 + conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: gme:Gmet_1286 hypothetical protein gene gene866 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0831 Amico_0832 Amico_0832 Amico_0832 871056 872168 + protein of unknown function UPF0052 and CofD PFAM: protein of unknown function UPF0052 and CofD~KEGG: mxa:MXAN_3230 hypothetical protein gene gene867 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0832 Amico_0833 Amico_0833 Amico_0833 872176 873072 + protein of unknown function DUF199 PFAM: protein of unknown function DUF199 gene gene868 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0833 Amico_0834 Amico_0834 Amico_0834 873139 874158 + glyceraldehyde-3-phosphate dehydrogenase%2C type I TIGRFAM: glyceraldehyde-3-phosphate dehydrogenase%2C type I~KEGG: gem:GM21_1884 glyceraldehyde-3-phosphate dehydrogenase%2C type I~PFAM: glyceraldehyde 3-phosphate dehydrogenase gene gene869 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0834 Amico_0835 Amico_0835 Amico_0835 874162 875355 + Phosphoglycerate kinase KEGG: phosphoglycerate kinase %3B K00927 phosphoglycerate kinase~PFAM: phosphoglycerate kinase gene gene870 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0835 Amico_0836 Amico_0836 Amico_0836 875458 876270 + triosephosphate isomerase KEGG: gur:Gura_2059 triosephosphate isomerase~TIGRFAM: triosephosphate isomerase~PFAM: triosephosphate isomerase gene gene871 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0836 Amico_0837 Amico_0837 Amico_0837 876743 879495 + pseudogene gene872 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0837 Amico_0838 Amico_0838 Amico_0838 879492 879818 + conserved hypothetical protein KEGG: dal:Dalk_2737 hypothetical protein gene gene873 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0838 Amico_0839 Amico_0839 Amico_0839 879947 880759 + Nickel transport complex%2C NikM subunit%2C transmembrane PFAM: Nickel transport complex%2C NikM subunit%2C transmembrane~KEGG: dal:Dalk_2736 hypothetical protein gene gene874 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0839 Amico_0840 Amico_0840 Amico_0840 881134 881493 - iojap-like protein KEGG: shl:Shal_3232 iojap-like protein~TIGRFAM: iojap-like protein~PFAM: Iojap-related protein gene gene875 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0840 Amico_0841 Amico_0841 Amico_0841 881513 882787 - cell envelope-related transcriptional attenuator KEGG: hypothetical protein~TIGRFAM: cell envelope-related function transcriptional attenuator%2C LytR/CpsA family~PFAM: cell envelope-related transcriptional attenuator gene gene876 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0841 Amico_0842 Amico_0842 Amico_0842 882793 883440 - nicotinate (nicotinamide) nucleotide adenylyltransferase TIGRFAM: nicotinate (nicotinamide) nucleotide adenylyltransferase%3B cytidyltransferase-related domain protein~KEGG: geo:Geob_0609 nicotinate (nicotinamide) nucleotide adenylyltransferase~PFAM: cytidylyltransferase gene gene877 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0842 Amico_0843 Amico_0843 Amico_0843 883460 884776 - GTP-binding protein Obg/CgtA KEGG: sfu:Sfum_3641 small GTP-binding protein~TIGRFAM: GTP-binding protein Obg/CgtA%3B Obg family GTPase CgtA~PFAM: GTP1/OBG sub domain protein%3B GTP-binding protein HSR1-related%3B GTP1/OBG domain protein gene gene878 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0843 Amico_0844 Amico_0844 Amico_0844 884887 885168 - ribosomal protein L27 KEGG: tdn:Suden_1415 50S ribosomal protein L27~TIGRFAM: ribosomal protein L27~PFAM: ribosomal protein L27 gene gene879 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0844 Amico_0845 Amico_0845 Amico_0845 885168 885494 - protein of unknown function DUF464 PFAM: protein of unknown function DUF464 gene gene880 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0845 Amico_0846 Amico_0846 Amico_0846 885521 885832 - ribosomal protein L21 KEGG: noc:Noc_3033 ribosomal protein L21~TIGRFAM: ribosomal protein L21~PFAM: ribosomal protein L21 gene gene881 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0846 Amico_0847 Amico_0847 Amico_0847 885949 887601 - SMC domain protein KEGG: gme:Gmet_0942 DNA repair protein RecN~PFAM: SMC domain protein~SMART: AAA ATPase gene gene882 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0847 Amico_0848 Amico_0848 Amico_0848 887607 888488 - ATP-NAD/AcoX kinase PFAM: ATP-NAD/AcoX kinase~KEGG: geo:Geob_3461 ATP-NAD/AcoX kinase gene gene883 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0848 Amico_0849 Amico_0849 Amico_0849 888509 889324 - hemolysin A TIGRFAM: hemolysin A~PFAM: ribosomal RNA methyltransferase RrmJ/FtsJ%3B RNA-binding S4 domain protein~KEGG: gur:Gura_2037 hemolysin A~SMART: RNA-binding S4 domain protein gene gene884 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0849 Amico_0850 Amico_0850 Amico_0850 889293 891158 - deoxyxylulose-5-phosphate synthase KEGG: pca:Pcar_1667 1-deoxy-D-xylulose-5-phosphate synthase~TIGRFAM: deoxyxylulose-5-phosphate synthase~PFAM: Transketolase central region%3B Transketolase domain protein gene gene885 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0850 Amico_0851 Amico_0851 Amico_0851 891189 892091 - Geranyltranstransferase KEGG: GGPS1%3B GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1)%3B farnesyltranstransferase %3B K00787 dimethylallyltranstransferase~PFAM: Polyprenyl synthetase gene gene886 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0851 Amico_0852 Amico_0852 Amico_0852 892081 892305 - Exonuclease VII small subunit PFAM: Exonuclease VII small subunit~KEGG: tgr:Tgr7_0834 exodeoxyribonuclease VII small subunit gene gene887 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0852 Amico_0853 Amico_0853 Amico_0853 892409 892603 + ribosomal protein L28 KEGG: dps:DP1683 50S ribosomal protein L28~TIGRFAM: ribosomal protein L28~PFAM: ribosomal protein L28 gene gene888 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0853 Amico_0854 Amico_0854 Amico_0854 892617 893354 - thiamine pyrophosphokinase KEGG: sat:SYN_01522 thiamin pyrophosphokinase~TIGRFAM: thiamine pyrophosphokinase~PFAM: Thiamin pyrophosphokinase catalytic region gene gene889 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0854 Amico_0855 Amico_0855 Amico_0855 893341 895704 - cell division protein FtsK/SpoIIIE KEGG: sat:SYN_01274 cell division protein~PFAM: cell divisionFtsK/SpoIIIE%3B DNA translocase ftsK gamma~SMART: AAA ATPase gene gene890 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0855 Amico_0856 Amico_0856 Amico_0856 895691 897073 - peptidase U62 modulator of DNA gyrase PFAM: peptidase U62 modulator of DNA gyrase~KEGG: gsu:GSU0896 TldD protein gene gene891 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0856 Amico_0857 Amico_0857 Amico_0857 897070 897348 - pseudogene gene892 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0857 Amico_0858 Amico_0858 Amico_0858 897345 898349 - aminodeoxychorismate lyase PFAM: aminodeoxychorismate lyase~KEGG: dia:Dtpsy_1988 aminodeoxychorismate lyase gene gene893 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0858 Amico_0859 Amico_0859 Amico_0859 898366 899355 - Radical SAM domain protein PFAM: Radical SAM domain protein~KEGG: nam:NAMH_0848 radical SAM gene gene894 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0859 Amico_0860 Amico_0860 Amico_0860 899358 900665 - AMMECR1 domain protein PFAM: AMMECR1 domain protein%3B Extradiol ring- cleavage dioxygenase class III protein subunit B~KEGG: azo:azo1679 hypothetical protein gene gene895 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0860 Amico_0861 Amico_0861 Amico_0861 900687 901736 - S-adenosylmethionine/tRNA-ribosyltransferase-iso merase KEGG: glo:Glov_2012 S-adenosylmethionine:tRNA ribosyltransferase-isomerase~TIGRFAM:S-adenosylmethionine/tRNA-ribosyltransferase -isomerase~PFAM: Queuosine biosynthesis protein gene gene896 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0861 Amico_0862 Amico_0862 Amico_0862 901754 903184 - SpoIID/LytB domain protein KEGG: glo:Glov_2013 SpoIID/LytB domain protein~TIGRFAM: SpoIID/LytB domain protein~PFAM: Stage II sporulation D domain protein gene gene897 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0862 Amico_0863 Amico_0863 Amico_0863 903217 903441 - conserved hypothetical protein KEGG: ppd:Ppro_1650 hypothetical protein gene gene898 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0863 Amico_0864 Amico_0864 Amico_0864 903429 904487 - Holliday junction DNA helicase RuvB TIGRFAM: Holliday junction DNA helicase RuvB~PFAM: AAA ATPase central domain protein%3B Holliday junction DNA helicase RuvB domain%3B ATPase associated with various cellular activities AAA_5~KEGG: mca:MCA1223 Holliday junction DNA helicase RuvB~SMART: AAA ATPase gene gene899 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0864 Amico_0865 Amico_0865 Amico_0865 904498 905103 - Holliday junction DNA helicase RuvA KEGG: pnu:Pnuc_1879 Holliday junction DNA helicase RuvA~TIGRFAM: Holliday junction DNA helicase RuvA~PFAM: DNA recombination protein RuvA domain I gene gene900 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0865 Amico_0866 Amico_0866 Amico_0866 905097 905621 - crossover junction endodeoxyribonuclease RuvC TIGRFAM: crossover junction endodeoxyribonuclease RuvC~KEGG: pmr:PMI1114 Holliday junction resolvase~PFAM: Crossover junction endodeoxyribonuclease RuvC gene gene901 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0866 Amico_0867 Amico_0867 Amico_0867 905614 906363 - protein of unknown function DUF28 PFAM: protein of unknown function DUF28~KEGG: dvm:DvMF_3201 hypothetical protein gene gene902 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0867 Amico_0868 Amico_0868 Amico_0868 906397 907143 - NAD+ synthetase KEGG: asu:Asuc_0640 NAD+ synthetase~TIGRFAM: NAD+ synthetase~PFAM: NAD synthase gene gene903 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0868 Amico_0869 Amico_0869 Amico_0869 907352 907759 + transcriptional regulator NikR%2C CopG family PFAM: NikR nickel binding~KEGG: gur:Gura_0772 nickel responsive regulator gene gene904 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0869 Amico_0870 Amico_0870 Amico_0870 908052 909002 - ornithine carbamoyltransferase KEGG: ent:Ent638_0450 ornithine carbamoyltransferase~TIGRFAM: ornithine carbamoyltransferase~PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain%3B aspartate/ornithine carbamoyltransferase Asp/Orn-binding region gene gene905 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0870 Amico_0871 Amico_0871 Amico_0871 909026 910096 - 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase TIGRFAM: 1-hydroxy-2-methyl-2-(E)-butenyl 4- diphosphate synthase~KEGG: ppd:Ppro_1751 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase~PFAM: IspG family protein gene gene906 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0871 Amico_0872 Amico_0872 Amico_0872 910114 911151 - membrane-associated zinc metalloprotease TIGRFAM: membrane-associated zinc metalloprotease~PFAM: peptidase M50%3B PDZ/DHR/GLGF domain protein~KEGG: afw:Anae109_1161 putative membrane-associated zinc metalloprotease~SMART: PDZ/DHR/GLGF domain protein gene gene907 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0872 Amico_0873 Amico_0873 Amico_0873 911141 912343 - 1-deoxy-D-xylulose 5-phosphate reductoisomerase TIGRFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase~KEGG: dal:Dalk_3159 1-deoxy-D-xylulose 5-phosphate reductoisomerase~PFAM: 1-deoxy-D-xylulose 5-phosphate reductoisomerase domain protein gene gene908 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0873 Amico_0874 Amico_0874 Amico_0874 912340 913164 - phosphatidate cytidylyltransferase PFAM: phosphatidate cytidylyltransferase~KEGG: gbm:Gbem_2751 phosphatidate cytidylyltransferase gene gene909 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0874 Amico_0875 Amico_0875 Amico_0875 913145 913831 - undecaprenyl diphosphate synthase KEGG: pla:Plav_3192 undecaprenyl diphosphate synthase~TIGRFAM: undecaprenyl diphosphate synthase~PFAM: Di-trans-poly-cis-decaprenylcistransferase gene gene910 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0875 Amico_0876 Amico_0876 Amico_0876 913836 914474 - phage SPO1 DNA polymerase-related protein KEGG: scl:sce7637 DNA-directed DNA polymerase~TIGRFAM: phage SPO1 DNA polymerase-related protein~PFAM: Uracil-DNA glycosylase superfamily gene gene911 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0876 Amico_0877 Amico_0877 Amico_0877 914471 915283 - hypothetical protein gene gene912 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0877 Amico_0878 Amico_0878 Amico_0878 915480 915695 - hypothetical protein gene gene913 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0878 Amico_0879 Amico_0879 Amico_0879 915699 917006 - UDP-N-acetylglucosamine1-carboxyvinyltransferase KEGG: cvi:CV_0440 UDP-N-acetylglucosamine 1- carboxyvinyltransferase~TIGRFAM: UDP-N-acetylglucosamine 1- carboxyvinyltransferase~PFAM: EPSP synthase (3-phosphoshikimate 1- carboxyvinyltransferase) gene gene914 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0879 Amico_0880 Amico_0880 Amico_0880 917057 918187 - UDP-N-acetylglucosamine 2-epimerase TIGRFAM: UDP-N-acetylglucosamine 2-epimerase~KEGG: mes:Meso_3697 UDP-N-acetylglucosamine 2- epimerase~PFAM: UDP-N-acetylglucosamine 2-epimerase gene gene915 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0880 Amico_0881 Amico_0881 Amico_0881 918204 919091 - Glycosyl transferase%2C family 4%2C conserved region PFAM: Glycosyl transferase%2C family 4%2C conserved region~KEGG: sfu:Sfum_3327 glycosyl transferase family protein gene gene916 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0881 Amico_0882 Amico_0882 Amico_0882 919106 920203 - uracil phosphoribosyltransferase TIGRFAM: uracil phosphoribosyltransferase%3B sugar- phosphate isomerase%2C RpiB/LacA/LacB family%3B ribose 5- phosphate isomerase B~KEGG: dia:Dtpsy_1697 uracil phosphoribosyltransferase~PFAM: Ribose/galactose isomerase%3B phosphoribosyltransferase gene gene917 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0882 Amico_0883 Amico_0883 Amico_0883 920339 921460 - sodium ion-translocating decarboxylase%2C beta subunit TIGRFAM: sodium ion-translocating decarboxylase%2C beta subunit~KEGG: mca:MCA2479 oxaloacetate decarboxylase%2C beta subunit~PFAM: Na+transporting methylmalonyl- CoA/oxaloacetate decarboxylase beta subunit gene gene918 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0883 Amico_0884 Amico_0884 Amico_0884 921577 921888 - hypothetical protein KEGG: hypothetical protein gene gene919 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0884 Amico_0885 Amico_0885 Amico_0885 921966 922373 - sodium pump decarboxylase gamma subunit PFAM: sodium pump decarboxylase gamma subunit gene gene920 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0885 Amico_0886 Amico_0886 Amico_0886 922392 923951 - carboxyl transferase PFAM: carboxyl transferase~KEGG: dal:Dalk_3780 propionyl-CoA carboxylase gene gene921 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0886 Amico_0887 Amico_0887 Amico_0887 923974 924918 - LAO/AO transport system ATPase TIGRFAM: LAO/AO transport system ATPase~PFAM: ArgK protein~KEGG: sfu:Sfum_0456 LAO/AO transport system ATPase~SMART: AAA ATPase gene gene922 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0887 Amico_0888 Amico_0888 Amico_0888 924921 925340 - cobalamin B12-binding domain protein PFAM: cobalamin B12-binding domain protein~KEGG: afw:Anae109_1989 cobalamin B12-binding domain- containing protein gene gene923 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0888 Amico_0889 Amico_0889 Amico_0889 925356 927041 - methylmalonyl-CoA mutase%2C large subunit TIGRFAM: methylmalonyl-CoA mutase%2C large subunit~KEGG: gem:GM21_0572 methylmalonyl-CoA mutase%2C large subunit~PFAM: methylmalonyl-CoA mutase gene gene924 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0889 Amico_0890 Amico_0890 Amico_0890 927085 927285 - hypothetical protein gene gene925 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0890 Amico_0891 Amico_0891 Amico_0891 927478 928446 - oxidoreductase domain protein PFAM: oxidoreductase domain protein%3B Oxidoreductase domain%3B dihydrodipicolinate reductase~KEGG: mca:MCA0398 Gfo/Idh/MocA family oxidoreductase gene gene926 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0891 Amico_0892 Amico_0892 Amico_0892 928534 929304 - protein of unknown function DUF152 PFAM: protein of unknown function DUF152~KEGG: tcx:Tcr_1369 hypothetical protein gene gene927 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0892 Amico_0893 Amico_0893 Amico_0893 929304 930638 - FolC bifunctional protein KEGG: gem:GM21_0897 FolC bifunctional protein~TIGRFAM: FolC bifunctional protein~PFAM: Mur ligase middle domain protein%3B cytoplasmic peptidoglycan synthetase domain protein gene gene928 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0893 Amico_0894 Amico_0894 Amico_0894 930642 933308 - valyl-tRNA synthetase KEGG: gur:Gura_1799 valyl-tRNA synthetase~TIGRFAM: valyl-tRNA synthetase gene gene929 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0894 Amico_0895 Amico_0895 Amico_0895 933371 933964 - ribosome biogenesis GTP-binding protein YsxC KEGG: sat:SYN_00589 ribosome biogenesis GTP-binding protein YsxC~TIGRFAM: ribosome biogenesis GTP-binding protein YsxC%3B small GTP-binding protein~PFAM: GTP-binding protein HSR1-related gene gene930 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0895 Amico_0896 Amico_0896 Amico_0896 933967 936306 - ATP-dependent protease La SMART: peptidase S16 lon domain protein%3B AAA ATPase~TIGRFAM: ATP-dependent protease La~KEGG: geo:Geob_2636 ATP-dependent protease La~PFAM: peptidase S16 lon domain protein%3B AAA ATPase central domain protein%3B ATPase associated with various cellular activities AAA_5 gene gene931 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0896 Amico_0897 Amico_0897 Amico_0897 936307 937596 - ATP-dependent Clp protease%2C ATP-binding subunit ClpX TIGRFAM: ATP-dependent Clp protease%2C ATP-binding subunit ClpX~PFAM: ATPase AAA-2 domain protein%3B zinc finger C4 domain protein%3B AAA ATPase central domain protein%3B Clp ATPase-like~KEGG: glo:Glov_1927 ATP-dependent protease ATP- binding subunit ClpX~SMART: AAA ATPase gene gene932 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0897 Amico_0898 Amico_0898 Amico_0898 937697 938278 - ATP-dependent Clp protease%2C proteolytic subunit ClpP TIGRFAM: ATP-dependent Clp protease%2C proteolytic subunit ClpP~KEGG: gsu:GSU1792 ATP-dependent Clp protease%2C proteolytic subunit ClpP~PFAM: peptidase S14 ClpP gene gene933 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0898 Amico_0899 Amico_0899 Amico_0899 938324 939694 - trigger factor KEGG: pin:Ping_1464 trigger factor~TIGRFAM: trigger factor~PFAM: trigger factor domain%3B trigger factor domain protein%3B peptidylprolyl isomerase FKBP-type gene gene934 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0899 Amico_0900 Amico_0900 Amico_0900 939941 940144 - cold-shock DNA-binding domain protein KEGG: pca:Pcar_2806 cold shock proteins~PFAM: Cold-shock protein DNA-binding~SMART: Cold shock protein gene gene935 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0900 Amico_0901 Amico_0901 Amico_0901 940250 940345 - hypothetical protein gene gene936 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0901 Amico_0902 Amico_0902 Amico_0902 940484 941809 - S-adenosylhomocysteine deaminase KEGG: ppr:PBPRA1942 putative chlorohydrolase/aminohydrolase~PFAM: amidohydrolase gene gene937 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0902 Amico_0903 Amico_0903 Amico_0903 941806 942153 - pseudogene gene938 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0903 Amico_0904 Amico_0904 Amico_0904 942110 943261 - metal dependent phosphohydrolase KEGG: sfu:Sfum_1317 metal dependent phosphohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain~SMART: metal-dependent phosphohydrolase HD region gene gene939 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0904 Amico_0905 Amico_0905 Amico_0905 943470 944021 + LemA family protein PFAM: LemA family protein~KEGG: rlg:Rleg_0575 LemA family protein gene gene940 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0905 Amico_0906 Amico_0906 Amico_0906 944048 945994 + Protein of unknown function DUF2207%2C membrane PFAM: Protein of unknown function DUF2207%2C membrane~KEGG: dma:DMR_20450 hypothetical membrane protein gene gene941 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0906 Amico_0907 Amico_0907 Amico_0907 946127 947053 - hypothetical protein KEGG: abn:AB57_3207 hypothetical protein gene gene942 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0907 Amico_0908 Amico_0908 Amico_0908 947113 948195 - ABC transporter related protein KEGG: sfu:Sfum_3496 ABC transporter related~PFAM: ABC transporter related%3B Transport-associated OB domain protein~SMART: AAA ATPase gene gene943 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0908 Amico_0909 Amico_0909 Amico_0909 948199 949881 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: plu:plu0811 iron ABC transporter permease gene gene944 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0909 Amico_0910 Amico_0910 Amico_0910 949865 950824 - extracellular solute-binding protein family 1 PFAM: extracellular solute-binding protein family 1~KEGG: asu:Asuc_1682 extracellular solute-binding protein gene gene945 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0910 Amico_0911 Amico_0911 Amico_0911 951015 951344 - hypothetical protein gene gene946 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0911 Amico_0912 Amico_0912 Amico_0912 951506 951979 + pyridoxamine 5'-phosphate oxidase-related FMN- binding protein PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding~KEGG: glo:Glov_0247 LexA DNA-binding domain protein gene gene947 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0912 Amico_0913 Amico_0913 Amico_0913 952035 953585 - L-serine dehydratase%2C iron-sulfur-dependent%2C alpha subunit KEGG: ppw:PputW619_3319 L-serine ammonia-lyase~TIGRFAM: L-serine dehydratase%2C iron-sulfur- dependent%2C alpha subunit~PFAM: serine dehydratase alpha chain%3B serine dehydratase beta chain gene gene948 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0913 Amico_0914 Amico_0914 Amico_0914 953622 954035 - protein of unknown function DUF126 PFAM: protein of unknown function DUF126~KEGG: vap:Vapar_3212 protein of unknown function DUF126 gene gene949 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0914 Amico_0915 Amico_0915 Amico_0915 954038 955306 - protein of unknown function DUF521 PFAM: protein of unknown function DUF521~KEGG: vap:Vapar_3213 protein of unknown function DUF521 gene gene950 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0915 Amico_0916 Amico_0916 Amico_0916 955382 955759 - pseudogene gene951 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0916 Amico_0917 Amico_0917 Amico_0917 955837 957135 - protein of unknown function DUF1063 PFAM: protein of unknown function DUF1063~KEGG: dps:DP0591 hypothetical protein gene gene952 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0917 Amico_0918 Amico_0918 Amico_0918 957175 958473 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: dps:DP0487 DctM (C4-dicarboxylate permease%2C large subunit)~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene953 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0918 Amico_0919 Amico_0919 Amico_0919 958546 959058 - hypothetical protein KEGG: dps:DP0488 DctQ (C4-dicarboxylate permease%2C small subunit) gene gene954 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0919 Amico_0920 Amico_0920 Amico_0920 959161 960180 - Extracellular solute-binding protein%2C family 7 PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~KEGG: dps:DP0493 DctP (periplasmic C4-dicarboxylate binding protein) gene gene955 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0920 Amico_0921 Amico_0921 Amico_0921 960259 961257 - Ornithine cyclodeaminase KEGG: sdn:Sden_0589 ornithine cyclodeaminase~PFAM: ornithine cyclodeaminase/mu-crystallin gene gene956 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0921 Amico_0922 Amico_0922 Amico_0922 961342 962232 - transcriptional regulator%2C RpiR family PFAM: sugar isomerase (SIS)%3B helix-turn-helix protein RpiR~KEGG: pmy:Pmen_1089 RpiR family transcriptional regulator gene gene957 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0922 Amico_0923 Amico_0923 Amico_0923 962474 962806 - hypothetical protein KEGG: sat:SYN_02742 putative cytoplasmic protein gene gene958 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0923 Amico_0924 Amico_0924 Amico_0924 962883 963866 - transcriptional regulator protein-like protein KEGG: gsu:GSU0473 transcriptional regulator%2C putative gene gene959 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0924 Amico_0925 Amico_0925 Amico_0925 964118 965104 + TRAP transporter solute receptor%2C TAXI family TIGRFAM: TRAP transporter solute receptor%2C TAXI family~KEGG: eba:p2A97 putative periplasmic binding protein gene gene960 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0925 Amico_0926 Amico_0926 Amico_0926 965219 967099 + TRAP transporter%2C 4TM/12TM fusion protein KEGG: dat:HRM2_29050 TRAP transporter%2C 4TM/12TM fusion protein~TIGRFAM: TRAP transporter%2C 4TM/12TM fusion protein~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene961 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0926 Amico_0927 Amico_0927 Amico_0927 967265 967981 - PDZ/DHR/GLGF domain protein SMART: PDZ/DHR/GLGF domain protein gene gene962 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0927 Amico_0928 Amico_0928 Amico_0928 968644 970149 + ferredoxin-dependent glutamate synthase KEGG: dat:HRM2_39840 ferredoxin-dependent glutamate synthase gene gene963 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0928 Amico_0929 Amico_0929 Amico_0929 970479 970691 - conserved hypothetical protein KEGG: mms:mma_0006 hypothetical protein gene gene964 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0929 Amico_0930 Amico_0930 Amico_0930 970713 972482 - protein of unknown function DUF87 PFAM: protein of unknown function DUF87~KEGG: pfs:PFLU0171 hypothetical protein gene gene965 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0930 Amico_0931 Amico_0931 Amico_0931 972472 973671 - conserved hypothetical protein KEGG: smt:Smal_1675 hypothetical protein gene gene966 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0931 Amico_0932 Amico_0932 Amico_0932 973797 974015 - conserved hypothetical protein KEGG: dar:Daro_1371 hypothetical protein gene gene967 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0932 Amico_0933 Amico_0933 Amico_0933 974027 974653 - hypothetical protein KEGG: dar:Daro_1373 hypothetical protein gene gene968 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0933 Amico_0934 Amico_0934 Amico_0934 975385 975947 - pseudogene gene969 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0934 Amico_0935 Amico_0935 Amico_0935 976251 976667 + hypothetical protein KEGG: hypothetical protein gene gene970 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0935 Amico_0936 Amico_0936 Amico_0936 976848 977710 - pseudogene gene971 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0936 Amico_0937 Amico_0937 Amico_0937 977754 978149 + conserved hypothetical protein KEGG: dps:DP1079 hypothetical protein gene gene972 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0937 Amico_0938 Amico_0938 Amico_0938 978484 979689 + hypothetical protein KEGG: mmw:Mmwyl1_4207 putative signal peptide protein gene gene973 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0938 Amico_0939 Amico_0939 Amico_0939 979947 980132 - pseudogene gene974 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0939 Amico_0940 Amico_0940 Amico_0940 980133 980567 + hypothetical protein gene gene975 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0940 Amico_0941 Amico_0941 Amico_0941 981289 982875 + phospholipase D/Transphosphatidylase KEGG: dol:Dole_2328 phospholipase D/transphosphatidylase~PFAM: phospholipase D/Transphosphatidylase~SMART: phospholipase D/Transphosphatidylase gene gene977 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0941 Amico_0942 Amico_0942 Amico_0942 982891 984048 + metallophosphoesterase PFAM: metallophosphoesterase~KEGG: gur:Gura_3247 metallophosphoesterase gene gene978 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0942 Amico_0943 Amico_0943 Amico_0943 984433 984723 + pseudogene gene979 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0943 Amico_0944 Amico_0944 Amico_0944 984720 985121 + protein of unknown function DUF891 PFAM: protein of unknown function DUF891~KEGG: glo:Glov_3492 protein of unknown function DUF891 gene gene980 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0944 Amico_0945 Amico_0945 Amico_0945 985133 985564 + transcriptional regulator%2C XRE family PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein~KEGG: glo:Glov_3491 transcriptional regulator%2C XRE family gene gene981 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0945 Amico_0946 Amico_0946 Amico_0946 985533 985997 + hypothetical protein gene gene982 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0946 Amico_0947 Amico_0947 Amico_0947 986923 987858 + integrase family protein PFAM: integrase family protein~KEGG: fta:FTA_1837 tyrosine recombinase XerD/phage integrase family protein gene gene988 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0947 Amico_0948 Amico_0948 Amico_0948 987956 988327 + hypothetical protein gene gene989 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0948 Amico_0949 Amico_0949 Amico_0949 988625 989800 - DnaB domain protein helicase domain protein PFAM: DnaB domain protein helicase domain protein~KEGG: plu:plu1031 hypothetical protein gene gene990 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0949 Amico_0950 Amico_0950 Amico_0950 989823 990650 - hypothetical protein KEGG: dvm:DvMF_1672 hypothetical protein gene gene991 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0950 Amico_0951 Amico_0951 Amico_0951 990637 990804 - hypothetical protein gene gene992 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0951 Amico_0952 Amico_0952 Amico_0952 990801 991268 - hypothetical protein gene gene993 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0952 Amico_0953 Amico_0953 Amico_0953 991271 991492 - hypothetical protein gene gene994 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0953 Amico_0954 Amico_0954 Amico_0954 991600 992643 + hypothetical protein gene gene995 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0954 Amico_0955 Amico_0955 Amico_0955 993159 993380 + hypothetical protein gene gene996 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0955 Amico_0956 Amico_0956 Amico_0956 993327 994415 - Mandelate racemase/muconate lactonizing protein PFAM: Mandelate racemase/muconate lactonizing protein~KEGG: sml:Smlt0458 putative chloromuconate cycloisomerase gene gene997 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0956 Amico_0957 Amico_0957 Amico_0957 994417 995613 - protein of unknown function DUF819 PFAM: protein of unknown function DUF819~KEGG: sun:SUN_1175 hypothetical protein gene gene998 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0957 Amico_0958 Amico_0958 Amico_0958 995777 996121 - hypothetical protein gene gene999 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0958 Amico_0959 Amico_0959 Amico_0959 996518 998227 + Fibronectin-binding A domain protein PFAM: Fibronectin-binding A domain protein%3B protein of unknown function DUF814~KEGG: mxa:MXAN_6301 putative fibronectin-binding protein gene gene1002 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0959 Amico_0960 Amico_0960 Amico_0960 998157 999137 - pseudouridine synthase%2C RluA family TIGRFAM: pseudouridine synthase%2C RluA family~PFAM: pseudouridine synthase%3B RNA-binding S4 domain protein~KEGG: dac:Daci_5026 RluA family pseudouridine synthase~SMART: RNA-binding S4 domain protein gene gene1003 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0960 Amico_0961 Amico_0961 Amico_0961 999193 1001973 - isoleucyl-tRNA synthetase KEGG: gur:Gura_4313 isoleucyl-tRNA synthetase~TIGRFAM: isoleucyl-tRNA synthetase gene gene1004 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0961 Amico_0962 Amico_0962 Amico_0962 1002077 1004047 - TRAP transporter%2C 4TM/12TM fusion protein KEGG: sfu:Sfum_3721 TRAP transporter%2C 4TM/12TM fusion protein~TIGRFAM: TRAP transporter%2C 4TM/12TM fusion protein~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1005 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0962 Amico_0963 Amico_0963 Amico_0963 1004087 1004626 - hypothetical protein gene gene1006 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0963 Amico_0964 Amico_0964 Amico_0964 1004877 1005584 + transcriptional regulator%2C XRE family KEGG: hdu:HD0089 transcription regulator~PFAM: Peptidase S24/S26A/S26B%2C conserved region%3B helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene1008 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0964 Amico_0965 Amico_0965 Amico_0965 1005604 1005903 + hypothetical protein gene gene1009 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0965 Amico_0966 Amico_0966 Amico_0966 1005860 1007164 + DNA-directed DNA polymerase KEGG: mei:Msip34_1607 DNA-directed DNA polymerase~PFAM: UMUC domain protein DNA-repair protein gene gene1010 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0966 Amico_0967 Amico_0967 Amico_0967 1007121 1008071 - riboflavin biosynthesis protein RibF KEGG: sat:SYN_01948 riboflavin kinase / FMN adenylyltransferase~TIGRFAM: riboflavin biosynthesis protein RibF~PFAM: Riboflavin kinase%3B FAD synthetase gene gene1011 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0967 Amico_0968 Amico_0968 Amico_0968 1008092 1009006 - tRNA pseudouridine synthase B KEGG: cja:CJA_0438 tRNA pseudouridine synthase B~TIGRFAM: tRNA pseudouridine synthase B~PFAM: pseudouridylate synthase TruB domain protein gene gene1012 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0968 Amico_0969 Amico_0969 Amico_0969 1009003 1009992 - phosphoesterase DHHA1 PFAM: phosphoesterase DHHA1%3B phosphoesterase RecJ domain protein~KEGG: gsu:GSU1590 DHH domain-containing protein gene gene1013 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0969 Amico_0970 Amico_0970 Amico_0970 1009976 1010368 - ribosome-binding factor A KEGG: fph:Fphi_0949 ribosome-binding factor A~TIGRFAM: ribosome-binding factor A~PFAM: ribosome-binding factor A gene gene1014 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0970 Amico_0971 Amico_0971 Amico_0971 1010340 1010684 - protein of unknown function DUF503 PFAM: protein of unknown function DUF503~KEGG: afw:Anae109_1142 hypothetical protein gene gene1015 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0971 Amico_0972 Amico_0972 Amico_0972 1010684 1012648 - translation initiation factor IF-2 KEGG: gur:Gura_1901 translation initiation factor IF-2~TIGRFAM: translation initiation factor IF-2%3B small GTP-binding protein~PFAM: protein synthesis factor GTP-binding%3B translation initiation factor IF-2 domain protein%3B Miro domain protein%3B GTP-binding protein HSR1-related%3B elongation factor Tu domain 2 protein gene gene1016 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0972 Amico_0973 Amico_0973 Amico_0973 1012641 1012973 - hypothetical protein gene gene1017 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0973 Amico_0974 Amico_0974 Amico_0974 1012970 1013248 - protein of unknown function DUF448 PFAM: protein of unknown function DUF448~KEGG: gme:Gmet_1585 50S ribosomal protein L7AE gene gene1018 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0974 Amico_0975 Amico_0975 Amico_0975 1013264 1014352 - NusA antitermination factor TIGRFAM: transcription termination factor NusA~PFAM: NusA domain protein~KEGG: gme:Gmet_1584 transcription elongation factor NusA~SMART: KH domain protein gene gene1019 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0975 Amico_0976 Amico_0976 Amico_0976 1014368 1014847 - protein of unknown function DUF150 PFAM: protein of unknown function DUF150~KEGG: ppg:PputGB1_4714 hypothetical protein gene gene1020 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0976 Amico_0977 Amico_0977 Amico_0977 1015032 1016507 - inosine-5'-monophosphate dehydrogenase SMART: CBS domain containing protein~TIGRFAM: inosine-5'-monophosphate dehydrogenase~KEGG: pca:Pcar_1217 inosine-5'-monophosphate dehydrogenase~PFAM: IMP dehydrogenase/GMP reductase%3B CBS domain containing protein gene gene1021 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0977 Amico_0978 Amico_0978 Amico_0978 1016532 1017941 - glutamyl-tRNA synthetase KEGG: hypothetical protein %3B K01885 glutamyl-tRNA synthetase~TIGRFAM: glutamyl-tRNA synthetase~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain gene gene1022 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0978 Amico_0979 Amico_0979 Amico_0979 1017938 1019125 - 2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase KEGG: ade:Adeh_1272 2-C-methyl-D-erythritol 4- phosphate cytidylyltransferase 2-C-methyl-D-erythritol 2%2C4- cyclodiphosphate synthase~TIGRFAM: 2C-methyl-D-erythritol 2%2C4- cyclodiphosphate synthase~PFAM: MECDP-synthase%3B 4-diphosphocytidyl-2C-methyl- D-erythritol synthase gene gene1023 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0979 Amico_0980 Amico_0980 Amico_0980 1019122 1020297 - PilT protein domain protein KEGG: sat:SYN_01402 hypothetical protein~PFAM: PilT protein domain protein~SMART: Nucleotide binding protein PINc gene gene1024 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0980 Amico_0981 Amico_0981 Amico_0981 1020304 1020918 - recombination protein RecR TIGRFAM: recombination protein RecR~PFAM: Zinc finger C4-type%2C RecR%3B TOPRIM domain protein~KEGG: mxa:MXAN_1930 recombination protein RecR~SMART: Toprim sub domain protein gene gene1025 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0981 Amico_0982 Amico_0982 Amico_0982 1020920 1021228 - conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: dol:Dole_0541 hypothetical protein gene gene1026 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0982 Amico_0983 Amico_0983 Amico_0983 1021255 1021719 - protein of unknown function DUF163 PFAM: protein of unknown function DUF163~KEGG: afw:Anae109_0254 hypothetical protein gene gene1027 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0983 Amico_0984 Amico_0984 Amico_0984 1021726 1022367 - H+transporting two-sector ATPase D subunit PFAM: H+transporting two-sector ATPase D subunit~KEGG: atp6v1d%3B ATPase%2C H+ transporting%2C lysosomal 34kDa%2C V1 subunit D%3B K02149 V-type H+- transporting ATPase subunit D gene gene1028 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0984 Amico_0985 Amico_0985 Amico_0985 1022372 1023751 - H(+)-transporting two-sector ATPase KEGG: VACUOLAR ATP SYNTHASE SUBUNIT B %3B K02147 V- type H+-transporting ATPase subunit B~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B H+transporting two-sector ATPase alpha/beta subunit domain protein gene gene1029 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0985 Amico_0986 Amico_0986 Amico_0986 1023748 1025514 - H(+)-transporting two-sector ATPase KEGG: similar to Vacuolar ATP synthase catalytic subunit A%2C osteoclast isoform (V-ATPase A subunit 2) (Vacuolar proton pump alpha subunit 2) (V-ATPase 69 kDa subunit 2) (Isoform HO68) %3B K02145 V-type H+- transporting ATPase subunit -TRUNCATED-~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B H+transporting two-sector ATPase alpha/beta subunit domain protein gene gene1030 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0986 Amico_0987 Amico_0987 Amico_0987 1025526 1025792 - hypothetical protein gene gene1031 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0987 Amico_0988 Amico_0988 Amico_0988 1025813 1026751 - H+-ATPase subunit C-like protein gene gene1032 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0988 Amico_0989 Amico_0989 Amico_0989 1026822 1027460 - hypothetical protein gene gene1033 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0989 Amico_0990 Amico_0990 Amico_0990 1027473 1027691 - H+transporting two-sector ATPase C subunit PFAM: H+transporting two-sector ATPase C subunit~KEGG: gur:Gura_0419 H+-transporting two-sector ATPase%2C C subunit gene gene1034 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0990 Amico_0991 Amico_0991 Amico_0991 1027676 1029583 - V-type ATPase 116 kDa subunit PFAM: V-type ATPase 116 kDa subunit~KEGG: gur:Gura_0418 H(+)-transporting two-sector ATPase gene gene1035 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0991 Amico_0992 Amico_0992 Amico_0992 1029636 1029983 - hypothetical protein KEGG: similar to RB1-inducible coiled-coil 1 gene gene1036 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0992 Amico_0993 Amico_0993 Amico_0993 1029976 1030434 - putative signal transduction protein with CBS domains KEGG: dat:HRM2_27050 CBS domain family protein~PFAM: CBS domain containing protein~SMART: CBS domain containing protein gene gene1037 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0993 Amico_0994 Amico_0994 Amico_0994 1030442 1032022 - glycosyl transferase%2C WecB/TagA/CpsF family TIGRFAM: glycosyl transferase%2C WecB/TagA/CpsF family~KEGG: vco:VC0395_A0452 UDP-N-acetyl-D-mannosamine transferase~PFAM: glycosyl transferase WecB/TagA/CpsF gene gene1038 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0994 Amico_0995 Amico_0995 Amico_0995 1032365 1033546 - amidohydrolase TIGRFAM: amidohydrolase~KEGG: sml:Smlt2104 putative amidohydrolase~PFAM: peptidase M20%3B peptidase dimerisation domain protein gene gene1039 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0995 Amico_0996 Amico_0996 Amico_0996 1033695 1034966 - seryl-tRNA synthetase TIGRFAM: seryl-tRNA synthetase~KEGG: gsu:GSU0037 seryl-tRNA synthetase~PFAM: tRNA synthetase class II (G H P and S)%3B Seryl- tRNA synthetase%2C class IIa-like gene gene1040 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0996 Amico_0997 Amico_0997 Amico_0997 1034966 1035451 - 6%2C7-dimethyl-8-ribityllumazine synthase TIGRFAM: 6%2C7-dimethyl-8-ribityllumazine synthase~KEGG: mca:MCA1655 6%2C7-dimethyl-8-ribityllumazine synthase~PFAM: 67-dimethyl-8-ribityllumazine synthase gene gene1041 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0997 Amico_0998 Amico_0998 Amico_0998 1035473 1036714 - 3%2C4-dihydroxy-2-butanone 4-phosphate synthase KEGG: pca:Pcar_1447 putative bifunctional enzyme 3%2C4-dihydroxy-2-butanone 4-phosphate/GTP cyclohydrolase II~TIGRFAM: 3%2C4-dihydroxy-2-butanone 4-phosphate synthase%3B GTP cyclohydrolase II~PFAM: 34-dihydroxy-2-butanone 4-phosphate synthase%3B GTP cyclohydrolase II gene gene1042 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0998 Amico_0999 Amico_0999 Amico_0999 1036747 1037406 - riboflavin synthase%2C alpha subunit TIGRFAM: riboflavin synthase%2C alpha subunit~KEGG: apa:APP7_0407 riboflavin synthase subunit alpha~PFAM: Lumazine-binding protein gene gene1043 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_0999 Amico_1000 Amico_1000 Amico_1000 1037388 1038497 - riboflavin biosynthesis protein RibD TIGRFAM: riboflavin biosynthesis protein RibD~KEGG: gsu:GSU1688 riboflavin biosynthesis protein RibD~PFAM: bifunctional deaminase-reductase domain protein%3B CMP/dCMP deaminase zinc-binding gene gene1044 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1000 Amico_1001 Amico_1001 Amico_1001 1038475 1039950 - excinuclease ABC%2C C subunit TIGRFAM: excinuclease ABC%2C C subunit~PFAM: excinuclease ABC C subunit domain protein%3B Excinuclease ABC C subunit domain protein%3B helix-hairpin- helix motif%3B UvrB/UvrC protein~KEGG: tgr:Tgr7_1907 excinuclease ABC subunit C~SMART: Excinuclease ABC C subunit domain protein%3B Helix-hairpin-helix DNA-binding class 1 gene gene1045 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1001 Amico_1002 Amico_1002 Amico_1002 1040051 1041469 + cysteinyl-tRNA synthetase TIGRFAM: cysteinyl-tRNA synthetase~KEGG: dal:Dalk_0769 cysteinyl-tRNA synthetase~PFAM: Cysteinyl-tRNA synthetase class Ia %3B Cysteinyl-tRNA synthetase class Ia DALR%3B tRNA synthetase class I (M) gene gene1046 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1002 Amico_1003 Amico_1003 Amico_1003 1041503 1041991 - protein of unknown function DUF988 PFAM: protein of unknown function DUF988~KEGG: pmu:PM1660 hypothetical protein gene gene1047 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1003 Amico_1004 Amico_1004 Amico_1004 1042066 1043310 - amidase%2C hydantoinase/carbamoylase family TIGRFAM: amidase%2C hydantoinase/carbamoylase family~KEGG: noc:Noc_0781 allantoate amidohydrolase~PFAM: peptidase M20%3B peptidase dimerisation domain protein gene gene1048 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1004 Amico_1005 Amico_1005 Amico_1005 1043738 1044448 - Methyltransferase type 11 PFAM: Methyltransferase type 11%3B Methyltransferase type 12~KEGG: dda:Dd703_2603 methyltransferase type 11 gene gene1049 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1005 Amico_1006 Amico_1006 Amico_1006 1044572 1044790 - pseudogene gene1050 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1006 Amico_1007 Amico_1007 Amico_1007 1044823 1045026 - hypothetical protein gene gene1051 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1007 Amico_1008 Amico_1008 Amico_1008 1045285 1045839 + Rubrerythrin PFAM: Rubrerythrin%3B Rubredoxin-type Fe(Cys)4 protein~KEGG: gbm:Gbem_3325 rubrerythrin gene gene1052 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1008 Amico_1009 Amico_1009 Amico_1009 1045910 1046302 - translation initiation factor SUI1 PFAM: translation initiation factor SUI1~KEGG: mxa:MXAN_6338 SUI1 family protein gene gene1053 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1009 Amico_1010 Amico_1010 Amico_1010 1046315 1046809 - NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: dat:HRM2_01950 MutT family protein%2C putative 78-dihydro-8-oxoguanine triphosphatase (8-oxo-dGTPase) gene gene1054 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1010 Amico_1011 Amico_1011 Amico_1011 1046820 1047752 - Peptidase M23 PFAM: Peptidase M23~KEGG: dde:Dde_2203 M24/M37 family peptidase gene gene1055 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1011 Amico_1012 Amico_1012 Amico_1012 1047749 1049059 - pyrimidine-nucleoside phosphorylase TIGRFAM: pyrimidine-nucleoside phosphorylase~KEGG: afw:Anae109_0662 pyrimidine-nucleoside phosphorylase~PFAM: glycosyl transferase family 3%3B Pyrimidine nucleoside phosphorylase domain%3B Glycosyl transferase%2C family 3-like gene gene1056 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1012 Amico_1013 Amico_1013 Amico_1013 1049052 1049885 - inosine guanosine and xanthosine phosphorylase family KEGG: purine nucleoside phosphorylase I%2C inosine and guanosine-specific family protein%3B K03783 purine-nucleoside phosphorylase~TIGRFAM: inosine guanosine and xanthosine phosphorylase family%3B purine nucleoside phosphorylase I%2C inosine and guanosine-specific~PFAM: purine or other phosphorylase family 1 gene gene1057 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1013 Amico_1014 Amico_1014 Amico_1014 1049903 1050787 - integrase family protein PFAM: integrase family protein%3B integrase domain protein SAM domain protein~KEGG: ppd:Ppro_1142 tyrosine recombinase XerD gene gene1058 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1014 Amico_1015 Amico_1015 Amico_1015 1050843 1051382 - NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: dal:Dalk_3009 NUDIX hydrolase gene gene1059 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1015 Amico_1016 Amico_1016 Amico_1016 1051386 1051946 - Pyruvate/ketoisovalerate oxidoreductase PFAM: Pyruvate/ketoisovalerate oxidoreductase~KEGG: dde:Dde_0046 2-oxoglutarate ferredoxin oxidoreductase%2C gamma subunit gene gene1060 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1016 Amico_1017 Amico_1017 Amico_1017 1051959 1052705 - thiamine pyrophosphate protein domain protein TPP-binding protein PFAM: thiamine pyrophosphate protein domain protein TPP-binding~KEGG: dat:HRM2_10700 keto/isovalerate ferredoxin oxidoreductase%2C beta subunit gene gene1061 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1017 Amico_1018 Amico_1018 Amico_1018 1052720 1053784 - pyruvate flavodoxin/ferredoxin oxidoreductase domain protein PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein~KEGG: dat:HRM2_10690 2-oxoisovalerate ferredoxin oxidoreductase%2C alpha subunit gene gene1062 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1018 Amico_1019 Amico_1019 Amico_1019 1053809 1054027 - 4Fe-4S ferredoxin iron-sulfur binding domain protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: gbm:Gbem_3087 4Fe-4S ferredoxin iron-sulfur binding domain protein gene gene1063 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1019 Amico_1020 Amico_1020 Amico_1020 1054051 1054812 - putative ATP/GTP-binding protein KEGG: dal:Dalk_2229 putative ATP/GTP-binding protein gene gene1064 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1020 Amico_1021 Amico_1021 Amico_1021 1054805 1055737 - methionyl-tRNA formyltransferase KEGG: eba:ebA2954 methionyl-tRNA formyltransferase~TIGRFAM: methionyl-tRNA formyltransferase~PFAM: formyl transferase domain protein gene gene1065 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1021 Amico_1022 Amico_1022 Amico_1022 1055740 1056234 - peptide deformylase TIGRFAM: peptide deformylase~KEGG: gur:Gura_0818 peptide deformylase~PFAM: formylmethionine deformylase gene gene1066 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1022 Amico_1023 Amico_1023 Amico_1023 1056316 1057827 - RNA binding S1 domain protein PFAM: RNA binding S1 domain protein~KEGG: geo:Geob_2364 ribosomal protein S1 gene gene1067 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1023 Amico_1024 Amico_1024 Amico_1024 1057847 1058686 - hydroxymethylbutenyl pyrophosphate reductase TIGRFAM: hydroxymethylbutenyl pyrophosphate reductase~KEGG: gem:GM21_0994 hydroxymethylbutenyl pyrophosphate reductase~PFAM: LytB protein gene gene1068 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1024 Amico_1025 Amico_1025 Amico_1025 1058683 1059642 - tRNA delta(2)-isopentenylpyrophosphate transferase TIGRFAM: tRNA delta(2)-isopentenylpyrophosphate transferase~KEGG: gur:Gura_1771 tRNA delta(2)- isopentenylpyrophosphate transferase~PFAM: tRNA isopentenyltransferase gene gene1069 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1025 Amico_1026 Amico_1026 Amico_1026 1059639 1061360 - DNA mismatch repair protein domain protein PFAM: DNA mismatch repair protein domain protein%3B MutL dimerisation~KEGG: dal:Dalk_4491 DNA mismatch repair protein MutL gene gene1070 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1026 Amico_1027 Amico_1027 Amico_1027 1061347 1063923 - DNA mismatch repair protein MutS TIGRFAM: DNA mismatch repair protein MutS~PFAM: DNA mismatch repair protein MutS domain protein%3B MutS II domain protein%3B MutS IV domain protein%3B MutS III domain protein~KEGG: gme:Gmet_1424 DNA mismatch repair protein MutS~SMART: DNA mismatch repair protein MutS domain protein%3B MutS III domain protein gene gene1071 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1027 Amico_1028 Amico_1028 Amico_1028 1063927 1064343 - Holliday junction resolvase YqgF KEGG: sat:SYN_01734 4-amino-4-deoxychorismate lyase~PFAM: Holliday junction resolvase YqgF~SMART: Resolvase RNase H domain protein fold gene gene1072 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1028 Amico_1029 Amico_1029 Amico_1029 1064345 1066990 - alanyl-tRNA synthetase TIGRFAM: alanyl-tRNA synthetase~KEGG: pca:Pcar_2408 alanyl-tRNA synthetase~PFAM: Alanyl-tRNA synthetase%2C class IIc-like%3B phosphoesterase DHHA1%3B Threonyl/alanyl tRNA synthetase SAD gene gene1073 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1029 Amico_1030 Amico_1030 Amico_1030 1067016 1068299 - amidohydrolase PFAM: amidohydrolase%3B Amidohydrolase 3~KEGG: sfu:Sfum_2961 amidohydrolase gene gene1074 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1030 Amico_1031 Amico_1031 Amico_1031 1068303 1069544 - adenosylhomocysteinase TIGRFAM: adenosylhomocysteinase~KEGG: sfu:Sfum_0366 S-adenosyl-L-homocysteine hydrolase~PFAM: S-adenosyl-L-homocysteine hydrolase%2C NAD binding%3B Acetohydroxy acid isomeroreductase catalytic domain protein%3B D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B S-adenosyl-L-homocysteine hydrolase gene gene1075 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1031 Amico_1032 Amico_1032 Amico_1032 1069568 1070572 - translation initiation factor%2C aIF-2BI family TIGRFAM: translation initiation factor%2C aIF-2BI family%3B eIF-2B alpha/beta/delta-related uncharacterized protein~KEGG: afw:Anae109_4334 eIF-2B alpha/beta/delta- related uncharacterized protein~PFAM: initiation factor 2B related gene gene1076 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1032 Amico_1033 Amico_1033 Amico_1033 1070544 1071800 - exodeoxyribonuclease VII%2C large subunit TIGRFAM: exodeoxyribonuclease VII%2C large subunit~KEGG: cbc:CbuK_1104 exodeoxyribonuclease VII large subunit~PFAM: Exonuclease VII%2C large subunit-like%3B nucleic acid binding OB-fold tRNA/helicase-type gene gene1077 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1033 Amico_1034 Amico_1034 Amico_1034 1071766 1072242 - NusB antitermination factor KEGG: mxa:MXAN_4761 transcription antitermination factor NusB~TIGRFAM: transcription antitermination factor NusB~PFAM: NusB/RsmB/TIM44 gene gene1078 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1034 Amico_1035 Amico_1035 Amico_1035 1072246 1072734 - hypothetical protein gene gene1079 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1035 Amico_1036 Amico_1036 Amico_1036 1072809 1073354 - protein of unknown function DUF322 PFAM: protein of unknown function DUF322 gene gene1080 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1036 Amico_1037 Amico_1037 Amico_1037 1073375 1073794 - hypothetical protein KEGG: URN1%3B Pre-mRNA splicing factor associated with the U2-U5-U6 snRNPs%2C the RES complex%2C and the Prp19-associated complex (NTC)%3B null mutation displays synthetic genetic interactions with mutations affecting U2 snRNA and pre-mRN-TRUNCATED- gene gene1081 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1037 Amico_1038 Amico_1038 Amico_1038 1073814 1074386 - translation elongation factor P KEGG: ade:Adeh_0648 translation elongation factor P (EF-P)~TIGRFAM: translation elongation factor P~PFAM: Elongation factor P %3B Elongation factor P/YeiP protein%3B Elongation factor KOW domain protein gene gene1082 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1038 Amico_1039 Amico_1039 Amico_1039 1074706 1075743 + aminotransferase class I and II PFAM: aminotransferase class I and II~KEGG: lhk:LHK_00185 His8 gene gene1083 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1039 Amico_1040 Amico_1040 Amico_1040 1075762 1076073 + TrpR like protein%2C YerC/YecD KEGG: smt:Smal_1755 TrpR like protein%2C YerC/YecD~TIGRFAM: TrpR like protein%2C YerC/YecD~PFAM: Trp repressor gene gene1084 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1040 Amico_1041 Amico_1041 Amico_1041 1076090 1076791 - DNA-(apurinic or apyrimidinic site) lyase PFAM: HhH-GPD family protein%3B iron-sulfur cluster loop~KEGG: hypothetical protein %3B K10773 endonuclease III~SMART: HhH-GPD family protein%3B iron-sulfur cluster loop gene gene1085 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1041 Amico_1042 Amico_1042 Amico_1042 1076805 1079246 - ATP-dependent protease%2C putative KEGG: gsu:GSU2433 ATP-dependent protease%2C putative gene gene1086 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1042 Amico_1043 Amico_1043 Amico_1043 1079237 1080295 - tRNA(5-methylaminomethyl-2-thiouridylate)-methyl transferase KEGG: hhe:HH0956 tRNA-specific 2-thiouridylase MnmA~TIGRFAM: tRNA (5-methylaminomethyl-2-thiouridylate)- methyltransferase~PFAM: tRNA methyl transferase-like gene gene1087 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1043 Amico_1044 Amico_1044 Amico_1044 1080304 1082835 - ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC TIGRFAM: ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~KEGG: noc:Noc_2130 cation transporting ATPase%2C E1- E2 type~PFAM: E1-E2 ATPase-associated domain protein%3B cation transporting ATPase domain protein%3B Haloacid dehalogenase domain protein hydrolase gene gene1088 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1044 Amico_1045 Amico_1045 Amico_1045 1082868 1083404 - ATP:corrinoid adenosyltransferase BtuR/CobO/CobP PFAM: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP~KEGG: gem:GM21_1547 cob(I)alamin adenosyltransferase gene gene1089 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1045 Amico_1046 Amico_1046 Amico_1046 1083495 1085795 + (NiFe) hydrogenase maturation protein HypF KEGG: ppd:Ppro_2780 (NiFe) hydrogenase maturation protein HypF~TIGRFAM: [NiFe] hydrogenase maturation protein HypF~PFAM: SUA5/yciO/yrdC domain%3B acylphosphatase%3B zinc finger HypF domain protein gene gene1090 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1046 Amico_1047 Amico_1047 Amico_1047 1085854 1086861 - fructose-1%2C6-bisphosphatase%2C class II TIGRFAM: fructose-1%2C6-bisphosphatase%2C class II~KEGG: dat:HRM2_21890 GlpX~PFAM: GlpX family protein gene gene1091 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1047 Amico_1048 Amico_1048 Amico_1048 1086879 1088192 - adenylosuccinate lyase KEGG: gur:Gura_2064 adenylosuccinate lyase~TIGRFAM: adenylosuccinate lyase~PFAM: fumarate lyase%3B Adenylosuccinate lyase-like gene gene1092 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1048 Amico_1049 Amico_1049 Amico_1049 1088198 1088722 - conserved hypothetical protein KEGG: dat:HRM2_18430 hypothetical protein gene gene1093 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1049 Amico_1050 Amico_1050 Amico_1050 1088737 1089669 - signal recognition particle-docking protein FtsY TIGRFAM: signal recognition particle-docking protein FtsY~PFAM: GTP-binding signal recognition particle SRP54 G- domain%3B GTP-binding signal recognition particle SRP54 helical bundle~KEGG: geo:Geob_3595 signal recognition particle- docking protein FtsY~SMART: AAA ATPase gene gene1094 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1050 Amico_1051 Amico_1051 Amico_1051 1089688 1090956 - PSP1 domain protein PFAM: PSP1 domain protein~KEGG: gsu:GSU2231 hypothetical protein gene gene1095 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1051 Amico_1052 Amico_1052 Amico_1052 1090928 1091698 - DNA polymerase III gamma/tau subunits-like protein KEGG: pca:Pcar_1692 DNA polymerase III%2C gamma/tau subunits gene gene1096 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1052 Amico_1053 Amico_1053 Amico_1053 1091695 1092306 - thymidylate kinase TIGRFAM: thymidylate kinase~KEGG: dds:Ddes_0128 dTMP kinase~PFAM: thymidylate kinase gene gene1097 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1053 Amico_1054 Amico_1054 Amico_1054 1092309 1094129 - hypothetical protein KEGG: scl:sce7580 hypothetical protein gene gene1098 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1054 Amico_1055 Amico_1055 Amico_1055 1094159 1095266 - hypothetical protein gene gene1099 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1055 Amico_1056 Amico_1056 Amico_1056 1095567 1096541 + selenide%2C water dikinase KEGG: sfu:Sfum_3401 selenide%2C water dikinase~TIGRFAM: selenide%2C water dikinase~PFAM: AIR synthase related protein%3B AIR synthase related protein domain protein gene gene1100 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1056 Amico_1057 Amico_1057 Amico_1057 1096617 1097813 + major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: dal:Dalk_0091 major facilitator superfamily MFS_1 gene gene1101 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1057 Amico_1058 Amico_1058 Amico_1058 1097810 1098664 - hypothetical protein gene gene1102 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1058 Amico_1059 Amico_1059 Amico_1059 1098648 1099193 - Uracil phosphoribosyltransferase KEGG: dat:HRM2_09210 PyrR~PFAM: phosphoribosyltransferase gene gene1103 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1059 Amico_1060 Amico_1060 Amico_1060 1099215 1099937 - ribonuclease III SMART: ribonuclease III%3B double-stranded RNA binding domain protein~TIGRFAM: ribonuclease III~KEGG: pca:Pcar_1403 RNase III~PFAM: ribonuclease III%3B double-stranded RNA binding domain protein gene gene1104 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1060 Amico_1061 Amico_1061 Amico_1061 1099942 1101180 - 3-oxoacyl-(acyl-carrier-protein) synthase 2 KEGG: gsu:GSU1605 3-oxoacyl-(acyl-carrier-protein) synthase II~TIGRFAM: 3-oxoacyl-[acyl-carrier-protein] synthase 2~PFAM: Beta-ketoacyl synthase gene gene1105 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1061 Amico_1062 Amico_1062 Amico_1062 1101286 1101537 - acyl carrier protein KEGG: ppd:Ppro_1745 acyl carrier protein~TIGRFAM: acyl carrier protein~PFAM: phosphopantetheine-binding gene gene1106 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1062 Amico_1063 Amico_1063 Amico_1063 1101584 1102324 - 3-oxoacyl-(acyl-carrier-protein) reductase KEGG: tcx:Tcr_0712 3-oxoacyl-(acyl-carrier-protein) reductase~TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase~PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein gene gene1107 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1063 Amico_1064 Amico_1064 Amico_1064 1102326 1103279 - malonyl CoA-acyl carrier protein transacylase KEGG: geo:Geob_2613 malonyl CoA-acyl carrier protein transacylase~TIGRFAM: malonyl CoA-acyl carrier protein transacylase~PFAM: Acyl transferase gene gene1108 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1064 Amico_1065 Amico_1065 Amico_1065 1103298 1104245 - 2-nitropropane dioxygenase NPD PFAM: 2-nitropropane dioxygenase NPD~KEGG: dal:Dalk_5025 2-nitropropane dioxygenase NPD gene gene1109 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1065 Amico_1066 Amico_1066 Amico_1066 1104256 1105254 - 3-oxoacyl-(acyl-carrier-protein) synthase III TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) synthase III~KEGG: xfa:XF1817 3-oxoacyl-(acyl carrier protein) synthase III~PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein%3B 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III%3B chalcone and stilbene synthase domain protein gene gene1110 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1066 Amico_1067 Amico_1067 Amico_1067 1105262 1106260 - fatty acid/phospholipid synthesis protein PlsX KEGG: ppd:Ppro_1741 putative glycerol-3-phosphate acyltransferase PlsX~TIGRFAM: fatty acid/phospholipid synthesis protein PlsX~PFAM: fatty acid synthesis plsX protein gene gene1111 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1067 Amico_1068 Amico_1068 Amico_1068 1106279 1106857 - hypothetical protein KEGG: nis:NIS_1047 hypothetical protein gene gene1112 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1068 Amico_1069 Amico_1069 Amico_1069 1107018 1107224 - ribosomal protein L32 KEGG: sfu:Sfum_1369 ribosomal protein L32~TIGRFAM: ribosomal protein L32~PFAM: ribosomal L32p protein gene gene1113 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1069 Amico_1070 Amico_1070 Amico_1070 1107245 1107814 - protein of unknown function DUF177 PFAM: protein of unknown function DUF177~KEGG: gem:GM21_1151 protein of unknown function DUF177 gene gene1114 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1070 Amico_1071 Amico_1071 Amico_1071 1107839 1109035 - acetate kinase KEGG: hhe:HH1308 acetate kinase~TIGRFAM: acetate kinase~PFAM: acetate and butyrate kinase gene gene1115 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1071 Amico_1072 Amico_1072 Amico_1072 1109133 1110368 + cytidyltransferase-related domain protein KEGG: pca:Pcar_2281 nucleotidyltransferase~TIGRFAM: cytidyltransferase-related domain protein~PFAM: protein of unknown function DUF795 gene gene1116 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1072 Amico_1073 Amico_1073 Amico_1073 1110365 1110865 - pantetheine-phosphate adenylyltransferase TIGRFAM: pantetheine-phosphate adenylyltransferase%3B cytidyltransferase-related domain protein~KEGG: avn:Avin_03490 phosphopantetheine adenylyltransferase~PFAM: cytidylyltransferase gene gene1117 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1073 Amico_1074 Amico_1074 Amico_1074 1110862 1111371 - Protein of unknown function methylase putative PFAM: Protein of unknown function methylase putative~KEGG: sat:SYN_00910 adenine-specific methyltransferase gene gene1118 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1074 Amico_1075 Amico_1075 Amico_1075 1111368 1111766 - protein of unknown function UPF0066 PFAM: protein of unknown function UPF0066~KEGG: dma:DMR_18880 hypothetical protein gene gene1119 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1075 Amico_1076 Amico_1076 Amico_1076 1111763 1112716 - tRNA (guanine-N(7)-)-methyltransferase TIGRFAM: tRNA (guanine-N(7)-)-methyltransferase~KEGG: noc:Noc_1026 hypothetical protein~PFAM: putative methyltransferase gene gene1120 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1076 Amico_1077 Amico_1077 Amico_1077 1113084 1116644 + pyruvate ferredoxin/flavodoxin oxidoreductase KEGG: dvl:Dvul_0348 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein~TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase~PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein%3B Pyruvate/ketoisovalerate oxidoreductase%3B 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B Pyruvate-flavodoxin oxidoreductase%2C EKR domain gene gene1121 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1077 Amico_1078 Amico_1078 Amico_1078 1116939 1117769 + dimethyladenosine transferase TIGRFAM: dimethyladenosine transferase~PFAM: ribosomal RNA adenine methylase transferase~KEGG: sfu:Sfum_3312 dimethyladenosine transferase~SMART: Ribosomal RNA adenine methylase transferase- like gene gene1123 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1078 Amico_1079 Amico_1079 Amico_1079 1117802 1118077 - histone family protein DNA-binding protein KEGG: DNA-binding protein HU~PFAM: histone family protein DNA-binding protein~SMART: histone family protein DNA-binding protein gene gene1124 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1079 Amico_1080 Amico_1080 Amico_1080 1118201 1119511 - ribosome-associated GTPase EngA KEGG: gem:GM21_0752 small GTP-binding protein~TIGRFAM: ribosome-associated GTPase EngA%3B small GTP- binding protein~PFAM: GTP-binding protein HSR1-related%3B Miro domain protein gene gene1125 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1080 Amico_1081 Amico_1081 Amico_1081 1119554 1121368 - Primosomal protein N' (replication factor Y) - superfamily II helicase-like protein KEGG: cbc:CbuK_0111 primosomal protein N' gene gene1126 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1081 Amico_1082 Amico_1082 Amico_1082 1121365 1122600 - phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase TIGRFAM: phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase~KEGG: gem:GM21_2546 phosphopantothenoylcysteine decarboxylase/phosphopantothenate/cysteine ligase~PFAM: DNA/pantothenate metabolism flavoprotein domain protein%3B flavoprotein gene gene1127 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1082 Amico_1083 Amico_1083 Amico_1083 1122572 1122823 - hypothetical protein gene gene1128 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1083 Amico_1084 Amico_1084 Amico_1084 1122839 1123396 - guanylate kinase SMART: guanylate kinase/L-type calcium channel region~TIGRFAM: guanylate kinase~KEGG: hha:Hhal_0976 guanylate kinase~PFAM: guanylate kinase gene gene1129 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1084 Amico_1085 Amico_1085 Amico_1085 1123407 1123670 - protein of unknown function DUF370 PFAM: protein of unknown function DUF370~KEGG: dde:Dde_2720 hypothetical protein gene gene1130 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1085 Amico_1086 Amico_1086 Amico_1086 1123676 1124560 - domain of unknown function DUF1732 PFAM: domain of unknown function DUF1732%3B YicC domain protein~KEGG: dal:Dalk_1930 YicC domain protein gene gene1131 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1086 Amico_1087 Amico_1087 Amico_1087 1124587 1125723 - GTP-binding proten HflX KEGG: lpc:LPC_0011 GTP binding protein HflX~TIGRFAM: GTP-binding proten HflX%3B small GTP-binding protein~PFAM: GTP-binding protein HSR1-related gene gene1132 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1087 Amico_1088 Amico_1088 Amico_1088 1125707 1126333 - phospholipid/glycerol acyltransferase KEGG: ank:AnaeK_4035 1-acyl-sn-glycerol-3-phosphate acyltransferase~PFAM: phospholipid/glycerol acyltransferase~SMART: phospholipid/glycerol acyltransferase gene gene1133 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1088 Amico_1089 Amico_1089 Amico_1089 1126330 1127007 - cytidylate kinase KEGG: dal:Dalk_0934 cytidylate kinase~TIGRFAM: cytidylate kinase~PFAM: cytidylate kinase region gene gene1134 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1089 Amico_1090 Amico_1090 Amico_1090 1127112 1127834 - pseudouridine synthase KEGG: gem:GM21_1172 pseudouridine synthase~PFAM: pseudouridine synthase%3B RNA-binding S4 domain protein~SMART: RNA-binding S4 domain protein gene gene1135 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1090 Amico_1091 Amico_1091 Amico_1091 1127838 1128380 - chromosome segregation and condensation protein%2C ScpB KEGG: afw:Anae109_2121 putative transcriptional regulator~TIGRFAM: segregation and condensation protein B~PFAM: chromosome segregation and condensation protein ScpB gene gene1136 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1091 Amico_1092 Amico_1092 Amico_1092 1128352 1129125 - chromosome segregation and condensation protein ScpA PFAM: chromosome segregation and condensation protein ScpA~KEGG: geo:Geob_3015 chromosome segregation and condensation protein ScpA gene gene1137 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1092 Amico_1093 Amico_1093 Amico_1093 1129138 1130133 - tryptophanyl-tRNA synthetase TIGRFAM: tryptophanyl-tRNA synthetase~KEGG: dvl:Dvul_2825 tryptophanyl-tRNA synthetase~PFAM: aminoacyl-tRNA synthetase class Ib gene gene1138 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1093 Amico_1094 Amico_1094 Amico_1094 1130193 1130969 - protein of unknown function DUF34 PFAM: protein of unknown function DUF34~KEGG: dat:HRM2_29360 hypothetical protein gene gene1139 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1094 Amico_1095 Amico_1095 Amico_1095 1131336 1131431 - hypothetical protein gene gene1140 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1095 Amico_1096 Amico_1096 Amico_1096 1131445 1131552 - hypothetical protein gene gene1141 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1096 Amico_1097 Amico_1097 Amico_1097 1131565 1131897 - hypothetical protein gene gene1142 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1097 Amico_1098 Amico_1098 Amico_1098 1131839 1132180 - hypothetical protein gene gene1143 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1098 Amico_1099 Amico_1099 Amico_1099 1132162 1132488 - hypothetical protein KEGG: dvm:DvMF_1661 hypothetical protein gene gene1144 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1099 Amico_1100 Amico_1100 Amico_1100 1132495 1132872 - Peptidase M15A PFAM: Peptidase M15A%3B protein of unknown function DUF882~KEGG: dde:Dde_1882 hypothetical protein gene gene1145 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1100 Amico_1101 Amico_1101 Amico_1101 1132947 1133543 - hypothetical protein KEGG: sat:SYN_02282 putative cytoplasmic protein gene gene1146 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1101 Amico_1102 Amico_1102 Amico_1102 1133677 1135362 - Phage-related tail fibre protein-like protein KEGG: cvi:CV_0418 tail fiber-related protein gene gene1147 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1102 Amico_1103 Amico_1103 Amico_1103 1135374 1136030 - phage tail protein I KEGG: cvi:CV_0420 phage tail protein~TIGRFAM: phage tail protein I~PFAM: tail protein I gene gene1148 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1103 Amico_1104 Amico_1104 Amico_1104 1136023 1137132 - Baseplate J family protein PFAM: Baseplate J family protein~KEGG: spe:Spro_4957 baseplate J family protein gene gene1149 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1104 Amico_1105 Amico_1105 Amico_1105 1137119 1137439 - GPW/gp25 family protein PFAM: GPW/gp25 family protein~KEGG: spe:Spro_4958 hypothetical protein gene gene1150 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1105 Amico_1106 Amico_1106 Amico_1106 1137443 1137832 - conserved hypothetical protein KEGG: spe:Spro_4959 hypothetical protein gene gene1151 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1106 Amico_1107 Amico_1107 Amico_1107 1137839 1138132 - PAAR repeat-containing protein Contains selenocysteine gene gene1152 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1107 Amico_1108 Amico_1108 Amico_1108 1138145 1138597 - phage baseplate assembly protein V KEGG: pct:PC1_1573 phage baseplate assembly protein V~TIGRFAM: phage baseplate assembly protein V~PFAM: baseplate assembly protein V gene gene1153 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1108 Amico_1109 Amico_1109 Amico_1109 1138597 1139610 - late control D family protein PFAM: late control D family protein~KEGG: spe:Spro_4910 late control D family protein gene gene1154 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1109 Amico_1110 Amico_1110 Amico_1110 1139607 1139825 - putative phage tail protein gpX KEGG: bcj:BCAS0511 putative phage tail protein gpX gene gene1155 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1110 Amico_1111 Amico_1111 Amico_1111 1139818 1142250 - phage tail tape measure protein%2C TP901 family KEGG: pmr:PMI1973 phage tail fiber protein (tape measure protein)~TIGRFAM: phage tail tape measure protein%2C TP901 family~PFAM: tail tape measure protein TP901 core region gene gene1156 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1111 Amico_1112 Amico_1112 Amico_1112 1142401 1142682 - conserved hypothetical protein KEGG: spe:Spro_4912 hypothetical protein gene gene1157 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1112 Amico_1113 Amico_1113 Amico_1113 1142696 1143220 - major tail tube protein PFAM: major tail tube protein~KEGG: spe:Spro_4913 major tail tube protein gene gene1158 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1113 Amico_1114 Amico_1114 Amico_1114 1143233 1144681 - conserved hypothetical protein KEGG: spe:Spro_4914 hypothetical protein gene gene1159 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1114 Amico_1115 Amico_1115 Amico_1115 1144671 1144955 - hypothetical protein gene gene1160 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1115 Amico_1116 Amico_1116 Amico_1116 1144956 1145399 - conserved hypothetical protein KEGG: spe:Spro_4915 hypothetical protein gene gene1161 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1116 Amico_1117 Amico_1117 Amico_1117 1145400 1145954 - hypothetical protein KEGG: bph:Bphy_1891 hypothetical protein gene gene1162 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1117 Amico_1118 Amico_1118 Amico_1118 1145951 1146277 - conserved hypothetical protein KEGG: spe:Spro_4916 hypothetical protein gene gene1163 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1118 Amico_1119 Amico_1119 Amico_1119 1146281 1146616 - protein of unknown function UCP030771 PFAM: protein of unknown function UCP030771~KEGG: hap:HAPS_0605 putative RecA/RADA recombinase gene gene1164 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1119 Amico_1120 Amico_1120 Amico_1120 1146632 1148557 - peptidase U35 phage prohead HK97 PFAM: peptidase U35 phage prohead HK97~KEGG: bpy:Bphyt_1173 peptidase U35 phage prohead HK97 gene gene1165 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1120 Amico_1121 Amico_1121 Amico_1121 1148538 1150022 - phage portal protein%2C lambda family KEGG: sml:Smlt1869 putative portal protein B (gpb) (minor capsid protein B) [contains: protein B*]~TIGRFAM: phage portal protein%2C lambda family~PFAM: portal protein lambda gene gene1166 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1121 Amico_1122 Amico_1122 Amico_1122 1150016 1150204 - hypothetical protein gene gene1167 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1122 Amico_1123 Amico_1123 Amico_1123 1150223 1152088 - terminase GpA PFAM: terminase GpA~KEGG: dvu:DVU2876 terminase%2C large subunit%2C putative gene gene1168 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1123 Amico_1124 Amico_1124 Amico_1124 1152081 1152605 - hypothetical protein gene gene1169 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1124 Amico_1125 Amico_1125 Amico_1125 1152964 1153572 - integrase family protein PFAM: integrase family protein~KEGG: dma:DMR_09400 site-specific recombinase gene gene1170 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1125 Amico_1126 Amico_1126 Amico_1126 1153569 1153772 - hypothetical protein gene gene1171 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1126 Amico_1127 Amico_1127 Amico_1127 1154151 1154645 - hypothetical protein gene gene1172 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1127 Amico_1128 Amico_1128 Amico_1128 1154743 1154844 - hypothetical protein gene gene1173 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1128 Amico_1129 Amico_1129 Amico_1129 1154837 1155028 - hypothetical protein gene gene1174 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1129 Amico_1130 Amico_1130 Amico_1130 1155034 1155252 - pseudogene gene1175 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1130 Amico_1131 Amico_1131 Amico_1131 1155245 1156177 - IstB domain protein ATP-binding protein KEGG: ecf:ECH74115_1153 putative replication protein~PFAM: IstB domain protein ATP-binding protein~SMART: AAA ATPase gene gene1176 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1131 Amico_1132 Amico_1132 Amico_1132 1156174 1157043 - hypothetical protein KEGG: aha:AHA_2027 hypothetical protein gene gene1177 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1132 Amico_1133 Amico_1133 Amico_1133 1157073 1157510 - deoxyuridine 5'-triphosphate nucleotidohydrolase Dut KEGG: scl:sce3429 dUTP diphosphatase~TIGRFAM: deoxyuridine 5'-triphosphate nucleotidohydrolase Dut~PFAM: deoxyUTP pyrophosphatase gene gene1178 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1133 Amico_1134 Amico_1134 Amico_1134 1157600 1157959 - hypothetical protein gene gene1179 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1134 Amico_1135 Amico_1135 Amico_1135 1157970 1158113 - hypothetical protein gene gene1180 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1135 Amico_1136 Amico_1136 Amico_1136 1158217 1158990 - prophage antirepressor PFAM: phage antirepressor protein%3B BRO domain protein~KEGG: bcj:BCAM1879 hypothetical protein gene gene1181 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1136 Amico_1137 Amico_1137 Amico_1137 1158987 1159151 - hypothetical protein gene gene1182 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1137 Amico_1138 Amico_1138 Amico_1138 1159139 1159339 - hypothetical protein gene gene1183 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1138 Amico_1139 Amico_1139 Amico_1139 1159342 1159566 - hypothetical protein gene gene1184 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1139 Amico_1140 Amico_1140 Amico_1140 1159556 1159831 - hypothetical protein gene gene1185 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1140 Amico_1141 Amico_1141 Amico_1141 1160231 1160491 - transcriptional regulator%2C XRE family PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein~KEGG: vsa:VSAL_p320_13 putative peptidase%2C S24-like gene gene1186 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1141 Amico_1142 Amico_1142 Amico_1142 1160642 1161322 + transcriptional regulator%2C XRE family PFAM: helix-turn-helix domain protein%3B Peptidase S24/S26A/S26B%2C conserved region~SMART: helix-turn-helix domain protein~KEGG: sbp:Sbal223_4446 putative phage repressor gene gene1187 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1142 Amico_1143 Amico_1143 Amico_1143 1161394 1162812 + hypothetical protein KEGG: yps:YPTB1873 hypothetical protein gene gene1188 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1143 Amico_1144 Amico_1144 Amico_1144 1162873 1163148 + hypothetical protein gene gene1189 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1144 Amico_1145 Amico_1145 Amico_1145 1163178 1163717 + hypothetical protein gene gene1190 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1145 Amico_1146 Amico_1146 Amico_1146 1163794 1164873 + Endonuclease/exonuclease/phosphatase PFAM: Endonuclease/exonuclease/phosphatase~KEGG: hypothetical protein gene gene1191 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1146 Amico_1147 Amico_1147 Amico_1147 1164993 1166684 + putative prophage Lp2 protein 4 KEGG: hap:HAPS_0628 putative prophage Lp2 protein 4 gene gene1192 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1147 Amico_1148 Amico_1148 Amico_1148 1166793 1167695 + D12 class N6 adenine-specific DNA methyltransferase PFAM: D12 class N6 adenine-specific DNA methyltransferase~KEGG: dze:Dd1591_3545 D12 class N6 adenine-specific DNA methyltransferase gene gene1193 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1148 Amico_1149 Amico_1149 Amico_1149 1167786 1168211 - hypothetical protein gene gene1194 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1149 Amico_1150 Amico_1150 Amico_1150 1168221 1168652 - prophage ps3 protein 01 KEGG: cjd:JJD26997_1909 prophage ps3 protein 01 gene gene1195 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1150 Amico_1151 Amico_1151 Amico_1151 1168837 1169964 - integrase family protein PFAM: integrase family protein~KEGG: bvi:Bcep1808_0425 phage integrase family protein gene gene1196 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1151 Amico_1152 Amico_1152 Amico_1152 1170315 1170497 - 4Fe-4S ferredoxin iron-sulfur binding domain protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: dde:Dde_0286 ferredoxin II gene gene1198 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1152 Amico_1153 Amico_1153 Amico_1153 1170577 1171368 - phosphoribosyltransferase PFAM: phosphoribosyltransferase~KEGG: xanthine phosphoribosyltransferase gene gene1199 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1153 Amico_1154 Amico_1154 Amico_1154 1171365 1172240 - 4-(cytidine 5'-diphospho)-2-C-methyl-D- erythritol kinase KEGG: dal:Dalk_3377 4-diphosphocytidyl-2C-methyl-D- erythritol kinase~PFAM: GHMP kinase gene gene1200 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1154 Amico_1155 Amico_1155 Amico_1155 1172324 1172563 - hypothetical protein gene gene1201 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1155 Amico_1156 Amico_1156 Amico_1156 1172660 1174600 - selenocysteine-specific translation elongation factor KEGG: gme:Gmet_3415 selenocysteine-specific translation elongation factor SelB~TIGRFAM: selenocysteine-specific translation elongation factor%3B small GTP-binding protein~PFAM: protein synthesis factor GTP-binding%3B Elongation factor SelB winged helix 3%3B elongation factor Tu domain 2 protein gene gene1202 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1156 Amico_1157 Amico_1157 Amico_1157 1174593 1175999 - L-seryl-tRNA selenium transferase TIGRFAM: L-seryl-tRNA selenium transferase~KEGG: dal:Dalk_4347 selenocysteine synthase~PFAM: Pyridoxal phosphate-dependent transferase%3B Cys/Met metabolism pyridoxal-phosphate-dependent protein gene gene1203 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1157 Amico_1158 Amico_1158 Amico_1158 1176225 1176812 + selenium metabolism protein YedF KEGG: sfu:Sfum_3402 SirA family protein~TIGRFAM: selenium metabolism protein YedF~PFAM: SirA family protein gene gene1204 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1158 Amico_1159 Amico_1159 Amico_1159 1176838 1177410 - hypothetical protein gene gene1205 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1159 Amico_1160 Amico_1160 Amico_1160 1177452 1178564 - oxygen-independent coproporphyrinogen III oxidase SMART: Elongator protein 3/MiaB/NifB~TIGRFAM: oxygen-independent coproporphyrinogen III oxidase~KEGG: sfu:Sfum_1360 putative oxygen-independent coproporphyrinogen III oxidase~PFAM: HemN domain protein%3B Radical SAM domain protein gene gene1206 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1160 Amico_1161 Amico_1161 Amico_1161 1178561 1180372 - GTP-binding protein LepA KEGG: gsu:GSU1266 GTP-binding protein LepA~TIGRFAM: GTP-binding protein LepA%3B small GTP- binding protein~PFAM: GTP-binding protein LepA domain protein%3B elongation factor G domain protein%3B elongation factor Tu domain 2 protein%3B protein synthesis factor GTP-binding gene gene1207 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1161 Amico_1162 Amico_1162 Amico_1162 1180723 1181442 + phosphoribosylaminoimidazole-succinocarboxamide synthase TIGRFAM: phosphoribosylaminoimidazole- succinocarboxamide synthase~KEGG: cco:CCC13826_0132 phosphoribosylaminoimidazole-succinocarboxamide synthase~PFAM: SAICAR synthetase gene gene1208 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1162 Amico_1163 Amico_1163 Amico_1163 1181443 1181694 + phosphoribosylformylglycinamidine synthase%2C purS KEGG: cha:CHAB381_0846 phosphoribosylformylglycinamidine synthase%2C PurS protein~TIGRFAM: phosphoribosylformylglycinamidine synthase%2C purS~PFAM: phosphoribosylformylglycinamidine synthetase PurS gene gene1209 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1163 Amico_1164 Amico_1164 Amico_1164 1181697 1182404 + phosphoribosylformylglycinamidine synthase I TIGRFAM: phosphoribosylformylglycinamidine synthase I~KEGG: bja:bll5723 phosphoribosylformylglycinamidine synthase I~PFAM: CobB/CobQ domain protein glutamine amidotransferase gene gene1210 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1164 Amico_1165 Amico_1165 Amico_1165 1182401 1184557 + phosphoribosylformylglycinamidine synthase II KEGG: afw:Anae109_4362 phosphoribosylformylglycinamidine synthase II~TIGRFAM: phosphoribosylformylglycinamidine synthase II~PFAM: AIR synthase related protein domain protein%3B AIR synthase related protein gene gene1211 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1165 Amico_1166 Amico_1166 Amico_1166 1184558 1185931 + amidophosphoribosyltransferase KEGG: pca:Pcar_1326 amidophosphoribosyltransferase~TIGRFAM: amidophosphoribosyltransferase~PFAM: glutamine amidotransferase class-II%3B phosphoribosyltransferase gene gene1212 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1166 Amico_1167 Amico_1167 Amico_1167 1185915 1186907 + phosphoribosylformylglycinamidine cyclo-ligase TIGRFAM: phosphoribosylformylglycinamidine cyclo- ligase~KEGG: bcj:BCAL3261 phosphoribosylaminoimidazole synthetase~PFAM: AIR synthase related protein%3B AIR synthase related protein domain protein gene gene1213 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1167 Amico_1168 Amico_1168 Amico_1168 1186910 1187515 + phosphoribosylglycinamide formyltransferase KEGG: dvu:DVU0736 phosphoribosylglycinamide formyltransferase~TIGRFAM: phosphoribosylglycinamide formyltransferase~PFAM: formyl transferase domain protein gene gene1214 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1168 Amico_1169 Amico_1169 Amico_1169 1187502 1189031 + phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase SMART: AICARFT/IMPCHase bienzyme formylation region~TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase~KEGG: tgr:Tgr7_0361 IMP cyclohydrolase~PFAM: AICARFT/IMPCHase bienzyme formylation region%3B MGS domain protein gene gene1215 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1169 Amico_1170 Amico_1170 Amico_1170 1189044 1190315 + phosphoribosylamine/glycine ligase TIGRFAM: phosphoribosylamine/glycine ligase~KEGG: pca:Pcar_2231 phosphoribosylamine--glycine ligase~PFAM: Phosphoribosylglycinamide synthetase%2C ATP- grasp (A) domain%3B Phosphoribosylglycinamide synthetase%2C C- domain%3B ATP-dependent carboxylate-amine ligase domain protein ATP-grasp%3B Phosphoribosylglycinamide synthetase%2C N- domain gene gene1216 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1170 Amico_1171 Amico_1171 Amico_1171 1190327 1190872 + phosphoribosylaminoimidazole carboxylase%2C catalytic subunit TIGRFAM: phosphoribosylaminoimidazole carboxylase%2C catalytic subunit~KEGG: dps:DP2188 phosphoribosylamine--glycine ligase~PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase gene gene1217 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1171 Amico_1172 Amico_1172 Amico_1172 1190884 1191081 - hypothetical protein gene gene1218 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1172 Amico_1173 Amico_1173 Amico_1173 1191216 1191986 - extracellular solute-binding protein family 3 KEGG: cha:CHAB381_0434 arginine-binding periplasmic protein 1~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3 gene gene1219 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1173 Amico_1174 Amico_1174 Amico_1174 1192039 1193259 - argininosuccinate synthase TIGRFAM: argininosuccinate synthase~KEGG: hypothetical protein LOC100266261 %3B K01940 argininosuccinate synthase~PFAM: argininosuccinate synthase%3B Queuosine synthesis-like gene gene1220 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1174 Amico_1175 Amico_1175 Amico_1175 1193615 1194397 - stationary-phase survival protein SurE TIGRFAM: stationary-phase survival protein SurE~KEGG: gme:Gmet_1419 stationary phase survival protein SurE~PFAM: Survival protein SurE gene gene1221 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1175 Amico_1176 Amico_1176 Amico_1176 1194431 1195036 - peptidase M50 PFAM: peptidase M50~KEGG: dps:DP0062 hypothetical protein gene gene1222 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1176 Amico_1177 Amico_1177 Amico_1177 1195059 1197692 - CBS domain containing protein KEGG: sfu:Sfum_0679 polynucleotide adenylyltransferase region~PFAM: CBS domain containing protein%3B Polynucleotide adenylyltransferase region%3B phosphoesterase DHHA1%3B phosphoesterase RecJ domain protein~SMART: CBS domain containing protein gene gene1223 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1177 Amico_1178 Amico_1178 Amico_1178 1197689 1198570 - dephospho-CoA kinase KEGG: hip:CGSHiEE_07575 dephospho-CoA kinase~TIGRFAM: dephospho-CoA kinase gene gene1224 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1178 Amico_1179 Amico_1179 Amico_1179 1198530 1200512 - UvrD/REP helicase PFAM: UvrD/REP helicase~KEGG: gur:Gura_4326 UvrD/REP helicase gene gene1225 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1179 Amico_1180 Amico_1180 Amico_1180 1200509 1201168 - hydrogenase accessory protein HypB KEGG: dds:Ddes_1497 hydrogenase accessory protein HypB~TIGRFAM: hydrogenase accessory protein HypB~PFAM: cobalamin synthesis protein P47K gene gene1226 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1180 Amico_1181 Amico_1181 Amico_1181 1201152 1201514 - hydrogenase nickel insertion protein HypA KEGG: afr:AFE_3287 hydrogenase nickel insertion protein HypA~TIGRFAM: hydrogenase nickel insertion protein HypA~PFAM: hydrogenase expression/synthesis HypA gene gene1227 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1181 Amico_1182 Amico_1182 Amico_1182 1201601 1202140 - sigma 54 modulation protein/ribosomal protein S30EA KEGG: gur:Gura_2971 sigma-54 modulation protein/ribosomal protein S30EA~TIGRFAM: ribosomal subunit interface protein~PFAM: sigma 54 modulation protein/ribosomal protein S30EA gene gene1228 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1182 Amico_1183 Amico_1183 Amico_1183 1202290 1203480 + aminotransferase class I and II PFAM: aminotransferase class I and II~KEGG: gur:Gura_2501 aminotransferase%2C class I and II gene gene1229 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1183 Amico_1184 Amico_1184 Amico_1184 1203564 1204529 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase catalytic region~KEGG: similar to CG1236-PA gene gene1230 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1184 Amico_1185 Amico_1185 Amico_1185 1204773 1206074 + Xanthine/uracil/vitamin C permease PFAM: Xanthine/uracil/vitamin C permease%3B sulphate transporter~KEGG: lhk:LHK_00455 probable membrane permease protein gene gene1231 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1185 Amico_1186 Amico_1186 Amico_1186 1206192 1206752 - ribosome recycling factor KEGG: dvm:DvMF_2919 ribosome recycling factor~TIGRFAM: ribosome recycling factor~PFAM: ribosome recycling factor gene gene1232 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1186 Amico_1187 Amico_1187 Amico_1187 1206745 1207476 - uridylate kinase KEGG: pca:Pcar_1919 uridylate kinase~TIGRFAM: uridylate kinase~PFAM: aspartate/glutamate/uridylate kinase gene gene1233 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1187 Amico_1188 Amico_1188 Amico_1188 1207548 1208144 - translation elongation factor Ts KEGG: dat:HRM2_17110 Tsf~TIGRFAM: translation elongation factor Ts~PFAM: Translation elongation factor EFTs/EF1B dimerisation%3B ubiquitin-associated- domain-containing protein gene gene1234 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1188 Amico_1189 Amico_1189 Amico_1189 1208166 1208966 - ribosomal protein S2 KEGG: gsu:GSU1921 30S ribosomal protein S2~TIGRFAM: ribosomal protein S2~PFAM: ribosomal protein S2 gene gene1235 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1189 Amico_1190 Amico_1190 Amico_1190 1209198 1209536 + protein of unknown function DUF156 PFAM: protein of unknown function DUF156~KEGG: sat:SYN_00719 putative cytoplasmic protein gene gene1236 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1190 Amico_1191 Amico_1191 Amico_1191 1209737 1210189 - PEBP family protein PFAM: PEBP family protein~KEGG: sat:SYN_03131 phosphatidylethanolamine- binding protein gene gene1237 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1191 Amico_1192 Amico_1192 Amico_1192 1210323 1211617 + pseudogene gene1238 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1192 Amico_1193 Amico_1193 Amico_1193 1211650 1212885 - peptidase T TIGRFAM: peptidase T~KEGG: spl:Spea_2943 peptidase T~PFAM: peptidase dimerisation domain protein%3B peptidase M20 gene gene1239 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1193 Amico_1194 Amico_1194 Amico_1194 1212973 1214349 - magnesium transporter TIGRFAM: magnesium transporter~PFAM: MgtE integral membrane region%3B MgtE intracellular region%3B CBS domain containing protein~KEGG: dal:Dalk_4723 magnesium transporter~SMART: CBS domain containing protein gene gene1240 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1194 Amico_1195 Amico_1195 Amico_1195 1214631 1215497 - hypothetical protein gene gene1241 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1195 Amico_1196 Amico_1196 Amico_1196 1215638 1216021 - protein of unknown function DUF192 PFAM: protein of unknown function DUF192~KEGG: slo:Shew_0641 hypothetical protein gene gene1242 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1196 Amico_1197 Amico_1197 Amico_1197 1216008 1216898 - Type II secretion system F domain protein PFAM: Type II secretion system F domain~KEGG: ppd:Ppro_2698 type II secretion system protein gene gene1243 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1197 Amico_1198 Amico_1198 Amico_1198 1216911 1217840 - Type II secretion system F domain protein PFAM: Type II secretion system F domain~KEGG: nmu:Nmul_A2353 type II secretion system protein gene gene1244 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1198 Amico_1199 Amico_1199 Amico_1199 1217843 1219186 - type II secretion system protein E PFAM: type II secretion system protein E~KEGG: sfu:Sfum_1498 type II secretion system protein E gene gene1245 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1199 Amico_1200 Amico_1200 Amico_1200 1219186 1220301 - response regulator receiver protein KEGG: pol:Bpro_2554 response regulator receiver domain-containing protein~PFAM: response regulator receiver~SMART: response regulator receiver gene gene1246 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1200 Amico_1201 Amico_1201 Amico_1201 1220298 1221452 - type II and III secretion system protein PFAM: type II and III secretion system protein%3B transport-associated~KEGG: dde:Dde_2360 type II/III secretion system protein gene gene1247 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1201 Amico_1202 Amico_1202 Amico_1202 1221452 1222318 - Flp pilus assembly protein CpaB KEGG: cti:RALTA_B0192 putative Flp pilus assembly CpaB~TIGRFAM: Flp pilus assembly protein CpaB~PFAM: SAF domain protein gene gene1248 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1202 Amico_1203 Amico_1203 Amico_1203 1222334 1223323 - hypothetical protein KEGG: vpa:VP2417 hypothetical protein gene gene1249 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1203 Amico_1204 Amico_1204 Amico_1204 1223329 1223733 - TadE family protein PFAM: TadE family protein~KEGG: sfu:Sfum_1495 TadE family protein gene gene1250 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1204 Amico_1205 Amico_1205 Amico_1205 1223748 1224224 - peptidase A24A prepilin type IV PFAM: peptidase A24A prepilin type IV~KEGG: dps:DP1537 hypothetical protein gene gene1251 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1205 Amico_1206 Amico_1206 Amico_1206 1224310 1224459 - hypothetical protein gene gene1252 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1206 Amico_1207 Amico_1207 Amico_1207 1224472 1224633 - Flp/Fap pilin component PFAM: Flp/Fap pilin component~KEGG: dde:Dde_2357 pilin%2C putative gene gene1253 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1207 Amico_1208 Amico_1208 Amico_1208 1224851 1225528 - two component transcriptional regulator%2C LuxR family KEGG: ank:AnaeK_1881 two component transcriptional regulator%2C LuxR family~PFAM: response regulator receiver%3B regulatory protein LuxR%3B Sigma-70 region 4 type 2~SMART: response regulator receiver%3B regulatory protein LuxR gene gene1254 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1208 Amico_1209 Amico_1209 Amico_1209 1225528 1226673 - histidine kinase KEGG: gsu:GSU1292 sensory box histidine kinase~PFAM: ATP-binding region ATPase domain protein~SMART: ATP-binding region ATPase domain protein gene gene1255 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1209 Amico_1210 Amico_1210 Amico_1210 1226938 1228122 - acetyl-CoA acetyltransferase TIGRFAM: acetyl-CoA acetyltransferase~KEGG: sfu:Sfum_3582 acetyl-CoA acetyltransferases~PFAM: Thiolase gene gene1256 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1210 Amico_1211 Amico_1211 Amico_1211 1228119 1228820 - 3-oxoacid CoA-transferase%2C B subunit TIGRFAM: 3-oxoacid CoA-transferase%2C B subunit~KEGG: cko:CKO_00547 hypothetical protein~PFAM: coenzyme A transferase gene gene1257 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1211 Amico_1212 Amico_1212 Amico_1212 1228804 1229511 - 3-oxoacid CoA-transferase%2C A subunit TIGRFAM: 3-oxoacid CoA-transferase%2C A subunit~KEGG: ecx:EcHS_A2362 acetyl-CoA:acetoacetyl-CoA transferase subunit alpha~PFAM: coenzyme A transferase gene gene1258 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1212 Amico_1213 Amico_1213 Amico_1213 1229531 1231477 - TRAP transporter%2C 4TM/12TM fusion protein KEGG: sfu:Sfum_3721 TRAP transporter%2C 4TM/12TM fusion protein~TIGRFAM: TRAP transporter%2C 4TM/12TM fusion protein~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1259 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1213 Amico_1214 Amico_1214 Amico_1214 1231618 1232573 - pseudogene gene1260 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1214 Amico_1215 Amico_1215 Amico_1215 1232609 1233967 - aminotransferase class-III PFAM: aminotransferase class-III~KEGG: bam:Bamb_3496 hypothetical protein gene gene1261 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1215 Amico_1216 Amico_1216 Amico_1216 1234265 1235959 - hypothetical protein KEGG: dat:HRM2_43330 hypothetical protein gene gene1262 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1216 Amico_1217 Amico_1217 Amico_1217 1236091 1237251 - efflux transporter%2C RND family%2C MFP subunit KEGG: dal:Dalk_3729 efflux transporter%2C RND family%2C MFP subunit~TIGRFAM: efflux transporter%2C RND family%2C MFP subunit~PFAM: secretion protein HlyD family protein gene gene1263 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1217 Amico_1218 Amico_1218 Amico_1218 1237271 1238572 - outer membrane efflux protein PFAM: outer membrane efflux protein~KEGG: dal:Dalk_3730 outer membrane efflux protein gene gene1264 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1218 Amico_1219 Amico_1219 Amico_1219 1238569 1241664 - acriflavin resistance protein PFAM: acriflavin resistance protein~KEGG: dal:Dalk_3731 acriflavin resistance protein gene gene1265 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1219 Amico_1220 Amico_1220 Amico_1220 1241661 1242299 - transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: dat:HRM2_07740 transcriptional regulator (TetR family protein) gene gene1266 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1220 Amico_1221 Amico_1221 Amico_1221 1242575 1243675 + diguanylate cyclase TIGRFAM: diguanylate cyclase~PFAM: GGDEF domain containing protein~KEGG: abo:ABO_1262 GGDEF domain-containing protein~SMART: GGDEF domain containing protein gene gene1267 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1221 Amico_1222 Amico_1222 Amico_1222 1243922 1244278 - Cupin 2 conserved barrel domain protein PFAM: Cupin 2 conserved barrel domain protein~KEGG: asu:Asuc_1498 cupin 2 domain-containing protein gene gene1269 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1222 Amico_1223 Amico_1223 Amico_1223 1244275 1244733 - UspA domain protein PFAM: UspA domain protein~KEGG: geo:Geob_3533 UspA domain protein gene gene1270 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1223 Amico_1224 Amico_1224 Amico_1224 1244905 1246158 + Arginine deiminase KEGG: efe:EFER_4332 putative arginine deiminase (arginine dihydrolase)~PFAM: amidinotransferase gene gene1271 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1224 Amico_1225 Amico_1225 Amico_1225 1246182 1247471 - Protein of unknown function DUF2088 PFAM: Protein of unknown function DUF2088~KEGG: geo:Geob_0833 hypothetical protein gene gene1272 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1225 Amico_1226 Amico_1226 Amico_1226 1247484 1248989 - L-lactate permease PFAM: L-lactate permease~KEGG: cvi:CV_3026 L-lactate permease gene gene1273 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1226 Amico_1227 Amico_1227 Amico_1227 1249337 1250428 - aminotransferase class I and II PFAM: aminotransferase class I and II~KEGG: histidinol-phosphate aminotransferase%2C putative %3B K00817 histidinol-phosphate aminotransferase gene gene1274 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1227 Amico_1228 Amico_1228 Amico_1228 1250415 1251620 - Uncharacterized membrane protein-like protein KEGG: pfl:PFL_0803 hypothetical protein gene gene1275 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1228 Amico_1229 Amico_1229 Amico_1229 1252180 1252716 - Rubrerythrin PFAM: Rubrerythrin~KEGG: gbm:Gbem_2313 rubrerythrin gene gene1277 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1229 Amico_1230 Amico_1230 Amico_1230 1252844 1253314 - CMP/dCMP deaminase zinc-binding protein PFAM: CMP/dCMP deaminase zinc-binding~KEGG: sat:SYN_00164 tRNA-specific adenosine deaminase gene gene1278 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1230 Amico_1231 Amico_1231 Amico_1231 1253318 1254889 - Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~KEGG: rpa:RPA3386 amidohydrolase gene gene1279 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1231 Amico_1232 Amico_1232 Amico_1232 1254919 1255377 - conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: swd:Swoo_0569 hypothetical protein gene gene1280 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1232 Amico_1233 Amico_1233 Amico_1233 1255452 1255958 + hypothetical protein gene gene1281 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1233 Amico_1234 Amico_1234 Amico_1234 1255968 1256924 - arsenite-activated ATPase ArsA TIGRFAM: arsenite-activated ATPase ArsA~KEGG: hha:Hhal_2193 arsenite-activated ATPase ArsA~PFAM: Anion-transporting ATPase gene gene1282 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1234 Amico_1235 Amico_1235 Amico_1235 1256941 1257258 - hypothetical protein KEGG: hha:Hhal_2192 hypothetical protein gene gene1283 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1235 Amico_1236 Amico_1236 Amico_1236 1257293 1257484 - 4-oxalocrotonate tautomerase family enzyme KEGG: reh:H16_A2763 4-oxalocrotonate tautomerase~TIGRFAM: 4-oxalocrotonate tautomerase family enzyme~PFAM: 4-oxalocrotonate tautomerase gene gene1284 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1236 Amico_1237 Amico_1237 Amico_1237 1257539 1258972 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase~KEGG: dma:DMR_26230 pyridine nucleotide-disulphide oxidoreductase family protein gene gene1285 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1237 Amico_1238 Amico_1238 Amico_1238 1259083 1260513 - peptidase M18 aminopeptidase I PFAM: peptidase M18 aminopeptidase I~KEGG: dat:HRM2_30320 putative peptidase M18 family protein gene gene1286 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1238 Amico_1239 Amico_1239 Amico_1239 1260551 1261801 - Hydroxypyruvate reductase KEGG: dal:Dalk_0946 hydroxypyruvate reductase~PFAM: MOFRL domain protein gene gene1287 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1239 Amico_1240 Amico_1240 Amico_1240 1261900 1262562 - YheO domain protein PFAM: YheO domain protein~KEGG: abb:ABBFA_001049 sensory box protein gene gene1288 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1240 Amico_1241 Amico_1241 Amico_1241 1262694 1263581 - conserved hypothetical protein KEGG: aha:AHA_3522 hypothetical protein gene gene1289 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1241 Amico_1242 Amico_1242 Amico_1242 1263915 1264073 + hypothetical protein gene gene1290 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1242 Amico_1243 Amico_1243 Amico_1243 1264165 1266576 - glycoside hydrolase family 65 central catalytic PFAM: glycoside hydrolase family 65 central catalytic%3B glycoside hydrolase family 65 domain protein~KEGG: noc:Noc_1775 beta-phosphoglucomutase hydrolase gene gene1291 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1243 Amico_1244 Amico_1244 Amico_1244 1266573 1268168 - beta-phosphoglucomutase family hydrolase KEGG: noc:Noc_1775 beta-phosphoglucomutase hydrolase~TIGRFAM: beta-phosphoglucomutase family hydrolase%3B HAD-superfamily hydrolase%2C subfamily IA%2C variant 3%3B trehalose-phosphatase%3B HAD-superfamily hydrolase%2C subfamily IIB~PFAM: trehalose-phosphatase%3B Haloacid dehalogenase domain protein hydrolase%3B Haloacid dehalogenase domain protein hydrolase type 3 gene gene1292 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1244 Amico_1245 Amico_1245 Amico_1245 1268495 1269133 + iron (metal) dependent repressor%2C DtxR family KEGG: dat:HRM2_42740 TroR~PFAM: FeoA family protein%3B iron dependent repressor~SMART: iron dependent repressor gene gene1293 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1245 Amico_1246 Amico_1246 Amico_1246 1269120 1269341 + FeoA family protein PFAM: FeoA family protein~KEGG: ade:Adeh_3291 hypothetical protein gene gene1294 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1246 Amico_1247 Amico_1247 Amico_1247 1269410 1269700 + FeoA family protein PFAM: FeoA family protein~KEGG: dol:Dole_0343 FeoA family protein gene gene1295 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1247 Amico_1248 Amico_1248 Amico_1248 1269703 1271736 + ferrous iron transport protein B KEGG: ppd:Ppro_0793 ferrous iron transport protein B~TIGRFAM: ferrous iron transport protein B%3B small GTP-binding protein~PFAM: GTP-binding protein HSR1-related%3B nucleoside recognition domain protein%3B Ferrous iron transport protein B domain protein%3B Ferrous iron transport B domain protein gene gene1296 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1248 Amico_1249 Amico_1249 Amico_1249 1271818 1272399 - Nicotinamidase KEGG: mca:MCA2761 pyrazinamidase/nicotinamidase%2C putative~PFAM: isochorismatase hydrolase gene gene1297 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1249 Amico_1250 Amico_1250 Amico_1250 1272539 1273618 - NAD/NADP octopine/nopaline dehydrogenase PFAM: NAD/NADP octopine/nopaline dehydrogenase%3B NAD- dependent glycerol-3-phosphate dehydrogenase domain protein~KEGG: glo:Glov_2392 NAD/NADP octopine/nopaline dehydrogenase gene gene1298 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1250 Amico_1251 Amico_1251 Amico_1251 1273749 1274525 + extracellular solute-binding protein family 3 KEGG: cff:CFF8240_1232 arginine-binding periplasmic protein 1~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3 gene gene1299 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1251 Amico_1252 Amico_1252 Amico_1252 1274539 1275531 + Ornithine cyclodeaminase KEGG: mlo:mlr1729 ornithine cyclodeaminase~PFAM: ornithine cyclodeaminase/mu-crystallin gene gene1300 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1252 Amico_1253 Amico_1253 Amico_1253 1276075 1277112 - transcriptional regulator%2C XRE family PFAM: helix-turn-helix domain protein~KEGG: sat:SYN_00015 transcriptional regulator gene gene1302 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1253 Amico_1254 Amico_1254 Amico_1254 1277691 1277924 + hypothetical protein gene gene1303 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1254 Amico_1255 Amico_1255 Amico_1255 1277995 1278681 + aspartate racemase KEGG: dal:Dalk_4875 aspartate racemase~TIGRFAM: aspartate racemase~PFAM: Asp/Glu/hydantoin racemase gene gene1304 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1255 Amico_1256 Amico_1256 Amico_1256 1279197 1279706 - C_GCAxxG_C_C family protein KEGG: dal:Dalk_5251 C_GCAxxG_C_C family protein~TIGRFAM: C_GCAxxG_C_C family protein~PFAM: C_GCAxxG_C_C family protein gene gene1305 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1256 Amico_1257 Amico_1257 Amico_1257 1279785 1280174 - NUDIX hydrolase PFAM: NUDIX hydrolase~KEGG: gme:Gmet_1790 NUDIX hydrolase gene gene1306 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1257 Amico_1258 Amico_1258 Amico_1258 1280521 1281597 - hypothetical protein KEGG: sfu:Sfum_0568 PpiC-type peptidyl-prolyl cis- trans isomerase gene gene1308 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1258 Amico_1259 Amico_1259 Amico_1259 1281679 1284243 - DNA polymerase I SMART: 5'-3' exonuclease%3B DNA-directed DNA polymerase%3B Helix-hairpin-helix domain protein class 2~TIGRFAM: DNA polymerase I~KEGG: pca:Pcar_0592 DNA polymerase I~PFAM: DNA-directed DNA polymerase%3B 5'-3' exonuclease%2C N-terminal resolvase-like domain%3B 5'-3' exonuclease%2C SAM-fold domain gene gene1309 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1259 Amico_1260 Amico_1260 Amico_1260 1284240 1285862 - Inorganic diphosphatase PFAM: DRTGG domain protein%3B CBS domain containing protein%3B DHHA2 domain protein~KEGG: pca:Pcar_1659 putative manganese-dependent inorganic pyrophosphatase~SMART: CBS domain containing protein gene gene1310 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1260 Amico_1261 Amico_1261 Amico_1261 1285993 1287312 + glutamyl-tRNA synthetase KEGG: gsu:GSU1219 glutamyl-tRNA synthetase~TIGRFAM: glutamyl-tRNA synthetase~PFAM: Glutamyl/glutaminyl-tRNA synthetase%2C class Ic%2C catalytic domain gene gene1311 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1261 Amico_1262 Amico_1262 Amico_1262 1287359 1288021 - 4Fe-4S ferredoxin iron-sulfur binding domain protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: ppd:Ppro_3522 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein gene gene1312 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1262 Amico_1263 Amico_1263 Amico_1263 1288037 1289032 - respiratory-chain NADH dehydrogenase subunit 1 PFAM: respiratory-chain NADH dehydrogenase subunit 1~KEGG: dds:Ddes_1881 respiratory-chain NADH dehydrogenase subunit 1 gene gene1313 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1263 Amico_1264 Amico_1264 Amico_1264 1289029 1290267 - NADH dehydrogenase (quinone) KEGG: ppd:Ppro_3524 NADH dehydrogenase (ubiquinone)~PFAM: NADH-ubiquinone oxidoreductase chain 49kDa gene gene1314 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1264 Amico_1265 Amico_1265 Amico_1265 1290280 1290825 - NADH dehydrogenase (ubiquinone) 30 kDa subunit PFAM: NADH dehydrogenase (ubiquinone) 30 kDa subunit~KEGG: asa:ASA_1812 formate hydrogenlyase subunit 5 precursor gene gene1315 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1265 Amico_1266 Amico_1266 Amico_1266 1290825 1291286 - NADH ubiquinone oxidoreductase 20 kDa subunit PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit~KEGG: ppd:Ppro_0593 NADH-quinone oxidoreductase%2C B subunit gene gene1316 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1266 Amico_1267 Amico_1267 Amico_1267 1291298 1291639 - hypothetical protein gene gene1317 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1267 Amico_1268 Amico_1268 Amico_1268 1291639 1293204 - NADH/Ubiquinone/plastoquinone (complex I) PFAM: NADH/Ubiquinone/plastoquinone (complex I)~KEGG: dda:Dd703_1285 NADH/ubiquinone/plastoquinone (complex I) gene gene1318 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1268 Amico_1269 Amico_1269 Amico_1269 1293201 1293548 - NADH-ubiquinone oxidoreductase chain 4L PFAM: NADH-ubiquinone oxidoreductase chain 4L~KEGG: sfr:Sfri_2285 NADH-ubiquinone oxidoreductase%2C chain 4L gene gene1319 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1269 Amico_1270 Amico_1270 Amico_1270 1293538 1294020 - Na+/H+ antiporter MnhB subunit-related protein PFAM: Na+/H+ antiporter MnhB subunit-related protein~KEGG: gbm:Gbem_1675 Na+/H+ antiporter MnhB subunit- related protein gene gene1320 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1270 Amico_1271 Amico_1271 Amico_1271 1294017 1294289 - putative multicomponent Na+-H+ antiporter subunit A KEGG: pla:Plav_2970 putative multicomponent Na+-H+ antiporter subunit A gene gene1321 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1271 Amico_1272 Amico_1272 Amico_1272 1294286 1294549 - putative monovalent cation/H+ antiporter subunit B KEGG: sfr:Sfri_2284 putative monovalent cation/H+ antiporter subunit B gene gene1322 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1272 Amico_1273 Amico_1273 Amico_1273 1294542 1294925 - monovalent cation/proton antiporter%2C MnhG/PhaG subunit KEGG: sme:SMc00057 putative monovalent cation/H+ antiporter subunit G~TIGRFAM: monovalent cation/proton antiporter%2C MnhG/PhaG subunit~PFAM: Na+/H+ antiporter subunit gene gene1323 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1273 Amico_1274 Amico_1274 Amico_1274 1294927 1295187 - multiple resistance and pH regulation protein F PFAM: multiple resistance and pH regulation protein F~KEGG: cti:RALTA_A1572 putative monovalent cation/H+ antiporter subunit F gene gene1324 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1274 Amico_1275 Amico_1275 Amico_1275 1295184 1295669 - cation antiporter PFAM: cation antiporter~KEGG: dat:HRM2_35410 MnhE gene gene1325 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1275 Amico_1276 Amico_1276 Amico_1276 1295948 1296868 + protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane~KEGG: mxa:MXAN_5916 hypothetical protein gene gene1326 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1276 Amico_1277 Amico_1277 Amico_1277 1296852 1297550 - hypothetical protein KEGG: similar to neurofilament%2C heavy polypeptide 200kDa %3B K04574 neurofilament heavy polypeptide gene gene1327 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1277 Amico_1278 Amico_1278 Amico_1278 1297555 1299414 - Radical SAM domain protein KEGG: scl:sce8639 hypothetical protein~PFAM: Radical SAM domain protein%3B Radical SAM domain protein~SMART: Elongator protein 3/MiaB/NifB gene gene1328 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1278 Amico_1279 Amico_1279 Amico_1279 1299457 1300479 - hypothetical protein gene gene1329 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1279 Amico_1280 Amico_1280 Amico_1280 1300510 1301247 - Silent information regulator protein Sir2 PFAM: Silent information regulator protein Sir2~KEGG: NAD-dependent deacetylase 1 gene gene1330 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1280 Amico_1281 Amico_1281 Amico_1281 1301410 1302480 - magnesium and cobalt transport protein CorA KEGG: gur:Gura_3419 magnesium and cobalt transport protein CorA~TIGRFAM: magnesium and cobalt transport protein CorA~PFAM: Mg2 transporter protein CorA family protein gene gene1331 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1281 Amico_1282 Amico_1282 Amico_1282 1302531 1303055 - Chromate transporter PFAM: Chromate transporter~KEGG: glo:Glov_3482 chromate transporter gene gene1332 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1282 Amico_1283 Amico_1283 Amico_1283 1303052 1303582 - Chromate transporter PFAM: Chromate transporter~KEGG: csa:Csal_1741 chromate transporter gene gene1333 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1283 Amico_1284 Amico_1284 Amico_1284 1303674 1304501 - metallophosphoesterase PFAM: metallophosphoesterase~KEGG: ara:Arad_2671 metallo-phosphoesterase protein gene gene1334 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1284 Amico_1285 Amico_1285 Amico_1285 1304560 1304877 - pseudogene gene1335 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1285 Amico_1286 Amico_1286 Amico_1286 1305080 1306129 + hypothetical protein gene gene1336 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1286 Amico_1287 Amico_1287 Amico_1287 1306289 1307653 + TrkA-N domain protein PFAM: TrkA-N domain protein%3B TrkA-C domain protein~KEGG: dat:HRM2_36670 TrkA4 gene gene1337 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1287 Amico_1288 Amico_1288 Amico_1288 1307656 1309107 + potassium uptake protein%2C TrkH family KEGG: dde:Dde_2029 K+ transporter trk~TIGRFAM: potassium uptake protein%2C TrkH family~PFAM: cation transporter gene gene1338 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1288 Amico_1289 Amico_1289 Amico_1289 1309141 1310625 - sodium/hydrogen exchanger PFAM: sodium/hydrogen exchanger%3B TrkA-C domain protein~KEGG: gsu:GSU1203 potassium/proton antiporter gene gene1339 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1289 Amico_1290 Amico_1290 Amico_1290 1310915 1311106 + 4Fe-4S ferredoxin iron-sulfur binding domain protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: bxe:Bxe_C0638 ferredoxin gene gene1340 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1290 Amico_1291 Amico_1291 Amico_1291 1311154 1312452 - protein of unknown function DUF21 KEGG: dal:Dalk_3618 protein of unknown function DUF21~PFAM: protein of unknown function DUF21%3B CBS domain containing protein%3B transporter-associated region~SMART: CBS domain containing protein gene gene1341 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1291 Amico_1292 Amico_1292 Amico_1292 1312552 1312834 - pseudogene gene1342 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1292 Amico_1293 Amico_1293 Amico_1293 1313151 1314572 + multi antimicrobial extrusion protein MatE PFAM: multi antimicrobial extrusion protein MatE~KEGG: maq:Maqu_3521 multi anti extrusion protein MatE gene gene1343 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1293 Amico_1294 Amico_1294 Amico_1294 1314567 1315283 - LrgB family protein PFAM: LrgB family protein~KEGG: psp:PSPPH_4658 hypothetical protein gene gene1344 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1294 Amico_1295 Amico_1295 Amico_1295 1315270 1315638 - LrgA family protein PFAM: LrgA family protein~KEGG: spe:Spro_1570 hypothetical protein gene gene1345 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1295 Amico_1296 Amico_1296 Amico_1296 1315806 1317113 - Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: bbr:BB1605 hypothetical protein gene gene1346 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1296 Amico_1297 Amico_1297 Amico_1297 1317178 1318668 - protein of unknown function DUF112 transmembrane PFAM: protein of unknown function DUF112 transmembrane~KEGG: efe:EFER_3654 hypothetical protein gene gene1347 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1297 Amico_1298 Amico_1298 Amico_1298 1318692 1319204 - hypothetical protein KEGG: pcr:Pcryo_1826 membrane protein TctB%2C putative gene gene1348 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1298 Amico_1299 Amico_1299 Amico_1299 1319339 1320319 - conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: mmw:Mmwyl1_0498 hypothetical protein gene gene1349 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1299 Amico_1300 Amico_1300 Amico_1300 1320406 1321326 - 5-carboxymethyl-2-hydroxymuconateDelta-isomerase KEGG: hypothetical protein~PFAM: fumarylacetoacetate (FAA) hydrolase gene gene1350 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1300 Amico_1301 Amico_1301 Amico_1301 1321373 1322368 - Isocitrate dehydrogenase (NAD(+)) KEGG: aha:AHA_1152 isocitrate dehydrogenase~PFAM: isocitrate/isopropylmalate dehydrogenase gene gene1351 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1301 Amico_1302 Amico_1302 Amico_1302 1322446 1323114 - transcriptional regulator%2C GntR family KEGG: gur:Gura_4161 GntR family transcriptional regulator~PFAM: GntR domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene1352 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1302 Amico_1303 Amico_1303 Amico_1303 1323146 1324321 - iron-containing alcohol dehydrogenase PFAM: iron-containing alcohol dehydrogenase~KEGG: pfo:Pfl01_5121 iron-containing alcohol dehydrogenase gene gene1353 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1303 Amico_1304 Amico_1304 Amico_1304 1324834 1326093 - Protein of unknown function DUF2088 PFAM: Protein of unknown function DUF2088~KEGG: geo:Geob_0833 hypothetical protein gene gene1354 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1304 Amico_1305 Amico_1305 Amico_1305 1326145 1327419 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: dps:DP3053 DctMQ fusion protein (C4- dicarboxylate transporter)~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1355 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1305 Amico_1306 Amico_1306 Amico_1306 1327435 1327917 - Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: sfu:Sfum_3144 tripartite ATP-independent periplasmic transporter DctQ gene gene1356 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1306 Amico_1307 Amico_1307 Amico_1307 1328046 1329071 - TRAP dicarboxylate transporter%2C DctP subunit KEGG: mmw:Mmwyl1_2293 TRAP dicarboxylate transporter%2C DctP subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene1357 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1307 Amico_1308 Amico_1308 Amico_1308 1329136 1330386 - pyruvate carboxyltransferase PFAM: pyruvate carboxyltransferase~KEGG: gsu:GSU0937 trans-homoaconitate synthase gene gene1358 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1308 Amico_1309 Amico_1309 Amico_1309 1330417 1331388 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase catalytic region~KEGG: scl:sce1526 putative D-isomer specific 2- hydroxyacid dehydrogenase family protein gene gene1359 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1309 Amico_1310 Amico_1310 Amico_1310 1331472 1332176 - regulatory protein GntR HTH KEGG: csa:Csal_0365 GntR family transcriptional regulator~PFAM: regulatory protein GntR HTH%3B GntR domain protein~SMART: regulatory protein GntR HTH gene gene1360 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1310 Amico_1311 Amico_1311 Amico_1311 1332373 1333452 + peptidase C45 acyl-coenzyme A:6- aminopenicillanic acid acyl-transferase PFAM: peptidase C45 acyl-coenzyme A:6- aminopenicillanic acid acyl-transferase~KEGG: hypothetical protein gene gene1361 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1311 Amico_1312 Amico_1312 Amico_1312 1333550 1335216 - pseudogene gene1362 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1312 Amico_1313 Amico_1313 Amico_1313 1335569 1336141 + pyruvate/ketoisovalerate oxidoreductase%2C gamma subunit KEGG: ppd:Ppro_0322 pyruvate/ketoisovalerate oxidoreductase%2C gamma subunit~TIGRFAM: pyruvate/ketoisovalerate oxidoreductase%2C gamma subunit~PFAM: Pyruvate/ketoisovalerate oxidoreductase gene gene1363 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1313 Amico_1314 Amico_1314 Amico_1314 1336138 1336464 + pyruvate ferredoxin/flavodoxin oxidoreductase%2C delta subunit KEGG: ppd:Ppro_0323 pyruvate ferredoxin/flavodoxin oxidoreductase%2C delta subunit~TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase%2C delta subunit~PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein gene gene1364 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1314 Amico_1315 Amico_1315 Amico_1315 1336481 1337647 + pyruvate flavodoxin/ferredoxin oxidoreductase domain protein PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein~KEGG: ppd:Ppro_0324 pyruvate flavodoxin/ferredoxin oxidoreductase domain-containing protein gene gene1365 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1315 Amico_1316 Amico_1316 Amico_1316 1337661 1338605 + thiamine pyrophosphate protein domain protein TPP-binding protein PFAM: thiamine pyrophosphate protein domain protein TPP-binding~KEGG: ppd:Ppro_0325 thiamine pyrophosphate binding domain-containing protein gene gene1366 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1316 Amico_1317 Amico_1317 Amico_1317 1338747 1339667 - mutase family protein KEGG: mutase family protein gene gene1367 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1317 Amico_1318 Amico_1318 Amico_1318 1339749 1340630 - carboxyvinyl-carboxyphosphonatephosphorylmutase KEGG: bbr:BB0718 carboxyvinyl-carboxyphosphonate phosphorylmutase gene gene1368 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1318 Amico_1319 Amico_1319 Amico_1319 1340658 1341938 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: bpt:Bpet2788 putative membrane protein (TRAP- type C4-dicarboxylate transport system)~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1369 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1319 Amico_1320 Amico_1320 Amico_1320 1341932 1342453 - Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: mmw:Mmwyl1_1470 tripartite ATP-independent periplasmic transporter DctQ gene gene1370 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1320 Amico_1321 Amico_1321 Amico_1321 1342700 1343692 - Extracellular solute-binding protein%2C family 7 PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~KEGG: mmw:Mmwyl1_1471 TRAP dicarboxylate transporter-DctP subunit gene gene1371 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1321 Amico_1322 Amico_1322 Amico_1322 1343800 1344480 - transcriptional regulator%2C GntR family KEGG: gur:Gura_4161 GntR family transcriptional regulator~PFAM: regulatory protein GntR HTH%3B iron dependent repressor~SMART: regulatory protein GntR HTH gene gene1372 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1322 Amico_1323 Amico_1323 Amico_1323 1345377 1346573 + Formyl-CoA transferase KEGG: eic:NT01EI_2168 hypothetical protein~PFAM: L-carnitine dehydratase/bile acid-inducible protein F gene gene1373 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1323 Amico_1324 Amico_1324 Amico_1324 1346573 1347502 + pyruvate carboxyltransferase PFAM: pyruvate carboxyltransferase~KEGG: reh:H16_A1235 hydroxymethylglutaryl-CoA lyase gene gene1374 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1324 Amico_1325 Amico_1325 Amico_1325 1347657 1348745 - Malate/L-lactate dehydrogenase PFAM: Malate/L-lactate dehydrogenase~KEGG: sat:SYN_02526 malate/L-lactate dehydrogenase gene gene1375 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1325 Amico_1326 Amico_1326 Amico_1326 1348951 1349691 - putative sigma E regulatory protein%2C MucB/RseB KEGG: dps:DP1781 hypothetical protein gene gene1376 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1326 Amico_1327 Amico_1327 Amico_1327 1349688 1350962 - protein of unknown function DUF214 PFAM: protein of unknown function DUF214~KEGG: dps:DP1782 lipoprotein releasing system transmembrane protein gene gene1377 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1327 Amico_1328 Amico_1328 Amico_1328 1350959 1352131 - protein of unknown function DUF214 PFAM: protein of unknown function DUF214~KEGG: dps:DP1783 lipoprotein releasing system transmembrane protein gene gene1378 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1328 Amico_1329 Amico_1329 Amico_1329 1352133 1352831 - ABC transporter related protein KEGG: dps:DP1784 lipoprotein releasing system%2C ATP- binding protein (LolD)~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1379 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1329 Amico_1330 Amico_1330 Amico_1330 1352859 1354016 - conserved hypothetical protein KEGG: dps:DP1785 hypothetical protein gene gene1380 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1330 Amico_1331 Amico_1331 Amico_1331 1354261 1356648 + conserved hypothetical protein KEGG: abu:Abu_0956 hypothetical protein gene gene1381 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1331 Amico_1332 Amico_1332 Amico_1332 1356674 1357843 + beta-lactamase domain protein PFAM: beta-lactamase domain protein~KEGG: dvu:DVU2014 metallo-beta-lactamase family protein gene gene1382 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1332 Amico_1333 Amico_1333 Amico_1333 1357943 1358299 + protein of unknown function DUF488 PFAM: protein of unknown function DUF488~KEGG: bcs:BCAN_B0480 hypothetical protein gene gene1383 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1333 Amico_1334 Amico_1334 Amico_1334 1358334 1359455 - plasmid maintenance system antidote protein%2C XRE family TIGRFAM: addiction module antidote protein%2C HigA family~PFAM: helix-turn-helix domain protein~KEGG: amc:MADE_03612 plasmid maintenance system antidote protein~SMART: helix-turn-helix domain protein gene gene1384 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1334 Amico_1335 Amico_1335 Amico_1335 1359778 1359900 - pseudogene gene1385 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1335 Amico_1336 Amico_1336 Amico_1336 1360055 1363501 - conserved hypothetical protein KEGG: sfu:Sfum_0410 hypothetical protein gene gene1386 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1336 Amico_1337 Amico_1337 Amico_1337 1363498 1366695 - helicase domain protein KEGG: sfu:Sfum_0411 helicase domain-containing protein~PFAM: helicase domain protein%3B type III restriction protein res subunit~SMART: helicase domain protein%3B DEAD-like helicase gene gene1387 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1337 Amico_1338 Amico_1338 Amico_1338 1367207 1368355 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: mmw:Mmwyl1_1994 major facilitator transporter gene gene1388 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1338 Amico_1339 Amico_1339 Amico_1339 1368714 1369448 - peptidase M15D vanX D-ala-D-ala dipeptidase PFAM: peptidase M15D vanX D-ala-D-ala dipeptidase%3B peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin~KEGG: dde:Dde_1551 D-alanyl-D-alanine dipeptidase gene gene1389 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1339 Amico_1340 Amico_1340 Amico_1340 1369461 1370750 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: dde:Dde_1550 TRAP dicarboxylate transporter- DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1390 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1340 Amico_1341 Amico_1341 Amico_1341 1370752 1371276 - Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: dde:Dde_1549 TRAP-type C4-dicarboxylate transport system small permease component-like gene gene1391 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1341 Amico_1342 Amico_1342 Amico_1342 1371285 1372322 - Extracellular solute-binding protein%2C family 7 PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~KEGG: csa:Csal_0660 TRAP dicarboxylate transporter%2C DctP subunit gene gene1392 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1342 Amico_1343 Amico_1343 Amico_1343 1373060 1373626 + hypothetical protein gene gene1393 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1343 Amico_1344 Amico_1344 Amico_1344 1373623 1374324 + hypothetical protein gene gene1394 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1344 Amico_1345 Amico_1345 Amico_1345 1374549 1375292 - Radical SAM domain protein PFAM: Radical SAM domain protein~KEGG: ppd:Ppro_0182 radical SAM domain-containing protein gene gene1395 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1345 Amico_1346 Amico_1346 Amico_1346 1375841 1376449 + transcriptional regulator%2C TetR family PFAM: regulatory protein TetR~KEGG: dat:HRM2_00670 HTH-type transcriptional regulator (TetR-family protein) gene gene1396 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1346 Amico_1347 Amico_1347 Amico_1347 1376446 1377597 + efflux transporter%2C RND family%2C MFP subunit KEGG: dat:HRM2_00680 HlyD~TIGRFAM: efflux transporter%2C RND family%2C MFP subunit~PFAM: secretion protein HlyD family protein gene gene1397 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1347 Amico_1348 Amico_1348 Amico_1348 1377594 1378799 + protein of unknown function DUF214 PFAM: protein of unknown function DUF214~KEGG: dat:HRM2_00690 ABC-type transporter%2C predicted premease protein gene gene1398 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1348 Amico_1349 Amico_1349 Amico_1349 1378801 1379511 + ABC transporter related protein KEGG: dat:HRM2_00700 ABC-type transporter%2C predicted ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1399 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1349 Amico_1350 Amico_1350 Amico_1350 1380033 1380494 - SsrA-binding protein KEGG: gme:Gmet_1646 SsrA-binding protein~TIGRFAM: SsrA-binding protein~PFAM: SmpB protein gene gene1401 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1350 Amico_1351 Amico_1351 Amico_1351 1380739 1381383 - hypothetical protein gene gene1403 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1351 Amico_1352 Amico_1352 Amico_1352 1381515 1382066 + isochorismatase hydrolase PFAM: isochorismatase hydrolase~KEGG: dar:Daro_0055 isochorismatase hydrolase gene gene1404 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1352 Amico_1353 Amico_1353 Amico_1353 1382102 1383343 + malic protein NAD-binding protein PFAM: malic protein NAD-binding%3B malic protein domain protein~KEGG: malic enzyme gene gene1405 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1353 Amico_1354 Amico_1354 Amico_1354 1383408 1384451 - Alcohol dehydrogenase zinc-binding domain protein PFAM: Alcohol dehydrogenase zinc-binding domain protein%3B Alcohol dehydrogenase GroES domain protein~KEGG: NADP-dependent alcohol dehydrogenase gene gene1406 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1354 Amico_1355 Amico_1355 Amico_1355 1384824 1385387 - Putative protein-S-isoprenylcysteine methyltransferase-like protein KEGG: sfu:Sfum_3255 isoprenylcysteine carboxyl methyltransferase gene gene1407 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1355 Amico_1356 Amico_1356 Amico_1356 1385377 1386447 - conserved hypothetical protein PFAM: conserved hypothetical protein~KEGG: maq:Maqu_3008 hypothetical protein gene gene1408 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1356 Amico_1357 Amico_1357 Amico_1357 1386444 1387022 - histidinol-phosphate phosphatase family protein TIGRFAM: histidinol-phosphate phosphatase family protein%3B hydrolase%2C HAD-superfamily%2C subfamily IIIA~KEGG: gme:Gmet_0923 D-alpha%2Cbeta-D-heptose 1%2C7- bisphosphate phosphatase gene gene1409 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1357 Amico_1358 Amico_1358 Amico_1358 1387016 1387618 - hypothetical protein KEGG: hypothetical protein gene gene1410 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1358 Amico_1359 Amico_1359 Amico_1359 1387615 1388598 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase%3B polysaccharide biosynthesis protein CapD~KEGG: reu:Reut_A0719 NAD-dependent epimerase/dehydratase:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase gene gene1411 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1359 Amico_1360 Amico_1360 Amico_1360 1388615 1389349 - Nucleotidyl transferase PFAM: Nucleotidyl transferase~KEGG: pen:PSEEN2466 phospho-sugar nucleotidyltransferase gene gene1412 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1360 Amico_1361 Amico_1361 Amico_1361 1389342 1389914 - phosphoheptose isomerase KEGG: geo:Geob_3483 phosphoheptose isomerase gene gene1413 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1361 Amico_1362 Amico_1362 Amico_1362 1389973 1390668 - two component transcriptional regulator%2C LuxR family KEGG: afw:Anae109_1810 two component LuxR family transcriptional regulator~PFAM: response regulator receiver%3B regulatory protein LuxR%3B Sigma-70 region 4 type 2~SMART: regulatory protein LuxR%3B response regulator receiver gene gene1414 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1362 Amico_1363 Amico_1363 Amico_1363 1390824 1391603 + PP-loop domain protein PFAM: PP-loop domain protein~KEGG: tgr:Tgr7_0207 putative cell cycle control ATPase gene gene1415 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1363 Amico_1364 Amico_1364 Amico_1364 1391671 1392618 - SufBD protein PFAM: SufBD protein~KEGG: sat:SYN_02867 ABC transporter system permease involved in Fe-S cluster assembly gene gene1416 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1364 Amico_1365 Amico_1365 Amico_1365 1392602 1393375 - ABC transporter related protein PFAM: ABC transporter related%3B SMC domain protein~KEGG: gur:Gura_2452 ABC transporter related gene gene1417 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1365 Amico_1366 Amico_1366 Amico_1366 1393447 1394844 - phosphoglucose isomerase (PGI) PFAM: phosphoglucose isomerase (PGI)~KEGG: afw:Anae109_2086 glucose-6-phosphate isomerase gene gene1418 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1366 Amico_1367 Amico_1367 Amico_1367 1394894 1395130 - glutaredoxin-like protein%2C YruB-family KEGG: sfu:Sfum_3219 YruB family glutaredoxin-like protein~TIGRFAM: glutaredoxin-like protein%2C YruB-family~PFAM: glutaredoxin gene gene1419 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1367 Amico_1368 Amico_1368 Amico_1368 1395394 1396230 + oxidoreductase FAD/NAD(P)-binding domain protein PFAM: oxidoreductase FAD/NAD(P)-binding domain protein%3B Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulphur cluster binding domain~KEGG: dat:HRM2_08790 cytochrome-c3 hydrogenase%2C gamma subunit (electron transfer subunit) gene gene1420 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1368 Amico_1369 Amico_1369 Amico_1369 1396230 1397645 + glutamate synthase (NADPH)%2C homotetrameric KEGG: sat:SYN_00606 glutamate synthase (NADPH)~TIGRFAM: glutamate synthase (NADPH)%2C homotetrameric~PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase gene gene1421 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1369 Amico_1370 Amico_1370 Amico_1370 1397688 1397903 + hypothetical protein gene gene1422 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1370 Amico_1371 Amico_1371 Amico_1371 1398017 1400098 - translation elongation factor G KEGG: sfu:Sfum_0068 elongation factor G~TIGRFAM: translation elongation factor G%3B small GTP- binding protein~PFAM: protein synthesis factor GTP-binding%3B elongation factor G domain protein%3B elongation factor Tu domain 2 protein%3B elongation factor G domain IV gene gene1423 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1371 Amico_1372 Amico_1372 Amico_1372 1400262 1401734 - glutamyl-tRNA(Gln) amidotransferase%2C B subunit KEGG: dat:HRM2_31420 GatB~TIGRFAM: glutamyl-tRNA(Gln) amidotransferase%2C B subunit~PFAM: GatB region%3B Asn/Gln amidotransferase%3B GatB central domain protein gene gene1424 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1372 Amico_1373 Amico_1373 Amico_1373 1401734 1403203 - glutamyl-tRNA(Gln) amidotransferase%2C A subunit TIGRFAM: glutamyl-tRNA(Gln) amidotransferase%2C A subunit~KEGG: hha:Hhal_1003 glutamyl-tRNA(Gln) amidotransferase%2C A subunit~PFAM: Amidase gene gene1425 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1373 Amico_1374 Amico_1374 Amico_1374 1403205 1403498 - glutamyl-tRNA(Gln) amidotransferase%2C C subunit KEGG: gsu:GSU3383 glutamyl-tRNA(Gln) amidotransferase%2C C subunit~TIGRFAM: glutamyl-tRNA(Gln) amidotransferase%2C C subunit~PFAM: Glu-tRNAGln amidotransferase C subunit gene gene1426 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1374 Amico_1375 Amico_1375 Amico_1375 1403501 1405555 - DNA ligase%2C NAD-dependent SMART: NAD-dependent DNA ligase %3B BRCT domain protein%3B Helix-hairpin-helix DNA-binding class 1~TIGRFAM: DNA ligase%2C NAD-dependent~KEGG: gur:Gura_1305 DNA ligase%2C NAD-dependent~PFAM: NAD-dependent DNA ligase adenylation%3B BRCT domain protein%3B helix-hairpin-helix motif%3B zinc-finger NAD- dependent DNA ligase C4-type%3B NAD-dependent DNA ligase OB- fold gene gene1427 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1375 Amico_1376 Amico_1376 Amico_1376 1405573 1407093 - lysyl-tRNA synthetase KEGG: lysine--tRNA ligase class II%2C chloroplast or mitochondrial %3B K04567 lysyl-tRNA synthetase%2C class II~TIGRFAM: lysyl-tRNA synthetase~PFAM: tRNA synthetase class II (D K and N)%3B nucleic acid binding OB-fold tRNA/helicase-type gene gene1428 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1376 Amico_1377 Amico_1377 Amico_1377 1407078 1408097 - dihydrouridine synthase DuS PFAM: dihydrouridine synthase DuS~KEGG: gme:Gmet_2561 dihydrouridine synthase TIM- barrel protein nifR3 gene gene1429 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1377 Amico_1378 Amico_1378 Amico_1378 1408078 1408845 - putative transcriptional acitvator%2C Baf family KEGG: gme:Gmet_1986 pantothenate kinase~TIGRFAM: transcriptional activator%2C Baf family~PFAM: Bvg accessory factor gene gene1430 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1378 Amico_1379 Amico_1379 Amico_1379 1408881 1410305 - ComEC/Rec2-related protein KEGG: xfn:XfasM23_0350 DNA internalization-related competence protein ComEC/Rec2~TIGRFAM: ComEC/Rec2-related protein~PFAM: ComEC/Rec2-related protein gene gene1431 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1379 Amico_1380 Amico_1380 Amico_1380 1410302 1410934 - competence protein ComEA helix-hairpin-helix repeat protein TIGRFAM: competence protein ComEA helix-hairpin- helix repeat protein~PFAM: Soluble ligand binding domain%3B helix-hairpin- helix motif~KEGG: ngo:NGO1178 ComE1~SMART: Helix-hairpin-helix DNA-binding class 1 gene gene1432 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1380 Amico_1381 Amico_1381 Amico_1381 1410927 1412249 - RNA modification enzyme%2C MiaB family TIGRFAM: RNA modification enzyme%2C MiaB family%3B tRNA- i(6)A37 thiotransferase enzyme MiaB~PFAM: Protein of unknown function UPF0004 %3B Radical SAM domain protein%3B deoxyribonuclease/rho motif-related TRAM~KEGG: gsu:GSU2198 tRNA-i(6)A37 modification enzyme MiaB~SMART: Elongator protein 3/MiaB/NifB gene gene1433 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1381 Amico_1382 Amico_1382 Amico_1382 1412404 1412886 + hypothetical protein gene gene1434 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1382 Amico_1383 Amico_1383 Amico_1383 1412966 1413721 - extracellular solute-binding protein family 3 KEGG: cff:CFF8240_1232 arginine-binding periplasmic protein 1~PFAM: extracellular solute-binding protein family 3~SMART: extracellular solute-binding protein family 3%3B ionotropic glutamate receptor gene gene1435 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1383 Amico_1384 Amico_1384 Amico_1384 1413888 1414049 - Rubredoxin-type Fe(Cys)4 protein PFAM: Rubredoxin-type Fe(Cys)4 protein~KEGG: sfu:Sfum_3222 rubredoxin-type Fe(Cys)4 protein gene gene1436 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1384 Amico_1385 Amico_1385 Amico_1385 1414146 1415252 - peptidase M24 PFAM: peptidase M24%3B creatinase~KEGG: gsu:GSU2021 xaa-pro dipeptidase gene gene1437 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1385 Amico_1386 Amico_1386 Amico_1386 1415268 1416248 - AIR synthase related protein domain protein PFAM: AIR synthase related protein domain protein%3B AIR synthase related protein~KEGG: aeh:Mlg_2063 AIR synthase-like protein gene gene1438 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1386 Amico_1387 Amico_1387 Amico_1387 1416254 1416805 - protein of unknown function DUF208 PFAM: protein of unknown function DUF208~KEGG: plu:plu0512 hypothetical protein gene gene1439 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1387 Amico_1388 Amico_1388 Amico_1388 1416813 1418759 - Transketolase central region PFAM: Transketolase central region%3B Transketolase domain protein~KEGG: sfu:Sfum_1302 transketolase gene gene1440 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1388 Amico_1389 Amico_1389 Amico_1389 1418892 1420010 - alanine racemase TIGRFAM: alanine racemase~KEGG: dat:HRM2_04830 Alr~PFAM: alanine racemase domain protein gene gene1441 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1389 Amico_1390 Amico_1390 Amico_1390 1420120 1421511 - amino acid carrier protein KEGG: abo:ABO_0618 sodium/alanine symporter~TIGRFAM: amino acid carrier protein~PFAM: sodium:alanine symporter gene gene1442 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1390 Amico_1391 Amico_1391 Amico_1391 1421781 1422932 - fatty acid synthesis plsX protein PFAM: fatty acid synthesis plsX protein~KEGG: dds:Ddes_0116 glycine reductase gene gene1443 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1391 Amico_1392 Amico_1392 Amico_1392 1422952 1424481 - betaine reductase KEGG: dds:Ddes_0115 betaine reductase gene gene1444 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1392 Amico_1393 Amico_1393 Amico_1393 1424563 1424796 - selenoprotein B%2C glycine/betaine/sarcosine/D- proline reductase family TIGRFAM: selenoprotein B%2C glycine/betaine/sarcosine/D-proline reductase family~KEGG: efe:EFER_3013 glycine reductase complex component B gamma subunit (selenoprotein PB gamma) (fragment) gene gene1445 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1393 Amico_1394 Amico_1394 Amico_1394 1424824 1425870 - selenoprotein B%2C glycine/betaine/sarcosine/D- proline reductase family KEGG: dds:Ddes_0113 selenoprotein B%2C glycine/betaine/sarcosine/D-proline reductase family~TIGRFAM: selenoprotein B%2C glycine/betaine/sarcosine/D-proline reductase family~PFAM: Selenoprotein B glycine/betaine/sarcosine/D- proline reductase gene gene1446 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1394 Amico_1395 Amico_1395 Amico_1395 1425896 1426225 - glycine reductase complex selenoprotein A PFAM: glycine reductase complex selenoprotein A~KEGG: dds:Ddes_0118 glycine reductase gene gene1447 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1395 Amico_1396 Amico_1396 Amico_1396 1426241 1426372 - glycine reductase KEGG: dds:Ddes_0118 glycine reductase gene gene1448 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1396 Amico_1397 Amico_1397 Amico_1397 1426422 1427708 - Glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits PFAM: Glycine/sarcosine/betaine reductase complex protein B alpha and beta subunits~KEGG: dds:Ddes_0112 sarcosine reductase gene gene1449 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1397 Amico_1398 Amico_1398 Amico_1398 1427736 1428059 - Thioredoxin domain protein PFAM: Thioredoxin domain~KEGG: dds:Ddes_0117 thioredoxin domain protein gene gene1450 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1398 Amico_1399 Amico_1399 Amico_1399 1428133 1428540 - GrdX protein KEGG: ppr:PBPRB1542 GrdX protein gene gene1451 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1399 Amico_1400 Amico_1400 Amico_1400 1428921 1430258 - sodium:neurotransmitter symporter PFAM: sodium:neurotransmitter symporter~KEGG: glo:Glov_2640 sodium:neurotransmitter symporter gene gene1452 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1400 Amico_1401 Amico_1401 Amico_1401 1430592 1430834 + hydrogenase assembly chaperone hypC/hupF KEGG: avn:Avin_50460 hydrogenase assembly chaperone HypC/HupF~TIGRFAM: hydrogenase assembly chaperone hypC/hupF~PFAM: hydrogenase expression/formation protein (HUPF/HYPC) gene gene1453 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1401 Amico_1402 Amico_1402 Amico_1402 1430821 1431969 + hydrogenase expression/formation protein HypD KEGG: dat:HRM2_11610 HypD~TIGRFAM: hydrogenase expression/formation protein HypD~PFAM: hydrogenase formation HypD protein gene gene1454 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1402 Amico_1403 Amico_1403 Amico_1403 1431927 1432916 + hydrogenase expression/formation protein HypE KEGG: wsu:WS0795 hydrogenase expression/formation protein~TIGRFAM: hydrogenase expression/formation protein HypE~PFAM: AIR synthase related protein domain protein%3B AIR synthase related protein gene gene1455 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1403 Amico_1404 Amico_1404 Amico_1404 1432987 1433775 - metallophosphoesterase PFAM: metallophosphoesterase~KEGG: gur:Gura_1101 metallophosphoesterase gene gene1456 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1404 Amico_1405 Amico_1405 Amico_1405 1433788 1435329 - metal dependent phosphohydrolase SMART: metal-dependent phosphohydrolase HD region%3B KH domain protein~TIGRFAM: YmdA/YtgF protein%3B metal dependent phophohydrolase~KEGG: sfu:Sfum_2578 metal dependent phosphohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain%3B K Homology%2C type 1%2C subgroup%3B Metal-dependent hydrolase HDOD gene gene1457 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1405 Amico_1406 Amico_1406 Amico_1406 1435420 1435854 - regulatory protein RecX PFAM: regulatory protein RecX~KEGG: glo:Glov_3159 regulatory protein RecX gene gene1458 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1406 Amico_1407 Amico_1407 Amico_1407 1435851 1437938 - ATP-dependent DNA helicase RecG TIGRFAM: ATP-dependent DNA helicase RecG~PFAM: DEAD/DEAH box helicase domain protein%3B helicase domain protein%3B nucleic acid binding OB-fold tRNA/helicase-type~KEGG: gsu:GSU1326 ATP-dependent DNA helicase RecG~SMART: DEAD-like helicase %3B helicase domain protein gene gene1459 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1407 Amico_1408 Amico_1408 Amico_1408 1437944 1438411 - DivIVA domain protein KEGG: pca:Pcar_0616 cell division initiation protein%2C DivIVA-like~TIGRFAM: DivIVA domain~PFAM: DivIVA family protein gene gene1460 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1408 Amico_1409 Amico_1409 Amico_1409 1438404 1438805 - hypothetical protein gene gene1461 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1409 Amico_1410 Amico_1410 Amico_1410 1438832 1439536 - alanine racemase domain protein PFAM: alanine racemase domain protein~KEGG: sat:SYN_00571 alanine racemase domain- containing protein gene gene1462 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1410 Amico_1411 Amico_1411 Amico_1411 1439530 1440459 - hypothetical protein gene gene1463 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1411 Amico_1412 Amico_1412 Amico_1412 1440463 1441437 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase catalytic region~KEGG: dat:HRM2_47720 SerA2 gene gene1464 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1412 Amico_1413 Amico_1413 Amico_1413 1441434 1442219 - protein of unknown function DUF198 PFAM: protein of unknown function DUF198~KEGG: gsu:GSU0484 putative GTP cyclohydrolase gene gene1465 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1413 Amico_1414 Amico_1414 Amico_1414 1442212 1442580 - 6-pyruvoyl tetrahydropterin synthase and hypothetical protein PFAM: 6-pyruvoyl tetrahydropterin synthase and hypothetical protein~KEGG: afw:Anae109_1887 putative 6-pyruvoyl tetrahydropterin synthase gene gene1466 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1414 Amico_1415 Amico_1415 Amico_1415 1442903 1445014 + glutamine synthetase catalytic region PFAM: glutamine synthetase catalytic region~KEGG: ppd:Ppro_1682 glutamine synthetase%2C catalytic region gene gene1467 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1415 Amico_1416 Amico_1416 Amico_1416 1445064 1446797 - O-antigen polymerase PFAM: O-antigen polymerase~KEGG: bph:Bphy_0448 O-antigen polymerase gene gene1468 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1416 Amico_1417 Amico_1417 Amico_1417 1446810 1448162 - replicative DNA helicase KEGG: gsu:GSU0998 replicative DNA helicase~TIGRFAM: replicative DNA helicase~PFAM: DnaB domain protein helicase domain protein gene gene1469 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1417 Amico_1418 Amico_1418 Amico_1418 1448165 1448611 - ribosomal protein L9 KEGG: bba:Bd0034 50S ribosomal protein L9~TIGRFAM: ribosomal protein L9~PFAM: Ribosomal protein L9-like gene gene1470 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1418 Amico_1419 Amico_1419 Amico_1419 1448614 1449567 - Protein of unknown function DUF2232%2C membrane PFAM: Protein of unknown function DUF2232%2C membrane~KEGG: gbm:Gbem_2762 hypothetical protein gene gene1471 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1419 Amico_1420 Amico_1420 Amico_1420 1449658 1449921 - ribosomal protein S18 KEGG: afw:Anae109_0121 ribosomal protein S18~TIGRFAM: ribosomal protein S18~PFAM: ribosomal protein S18 gene gene1472 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1420 Amico_1421 Amico_1421 Amico_1421 1449937 1450428 - single-strand binding protein KEGG: mxa:MXAN_1071 single-strand binding protein~TIGRFAM: single-strand binding protein~PFAM: single-strand binding protein/Primosomal replication protein n gene gene1473 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1421 Amico_1422 Amico_1422 Amico_1422 1450441 1450725 - ribosomal protein S6 KEGG: gbm:Gbem_2764 ribosomal protein S6~TIGRFAM: ribosomal protein S6~PFAM: ribosomal protein S6 gene gene1474 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1422 Amico_1423 Amico_1423 Amico_1423 1450804 1451109 - hypothetical protein gene gene1475 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1423 Amico_1424 Amico_1424 Amico_1424 1451114 1452790 - arginyl-tRNA synthetase TIGRFAM: arginyl-tRNA synthetase~KEGG: pca:Pcar_0742 arginyl-tRNA synthetase gene gene1476 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1424 Amico_1425 Amico_1425 Amico_1425 1452812 1454635 - hypothetical protein gene gene1477 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1425 Amico_1426 Amico_1426 Amico_1426 1454661 1457336 - preprotein translocase%2C SecA subunit KEGG: gme:Gmet_0951 preprotein translocase subunit SecA~TIGRFAM: preprotein translocase%2C SecA subunit~PFAM: SecA DEAD domain protein%3B SecA Wing and Scaffold%3B SecA preprotein cross-linking region%3B SEC-C motif domain protein gene gene1478 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1426 Amico_1427 Amico_1427 Amico_1427 1457386 1458642 - acetylornithine deacetylase or succinyl- diaminopimelate desuccinylase KEGG: sat:SYN_02795 diaminopimelate aminotransferase~TIGRFAM: acetylornithine deacetylase or succinyl- diaminopimelate desuccinylase~PFAM: peptidase M20%3B peptidase dimerisation domain protein gene gene1479 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1427 Amico_1428 Amico_1428 Amico_1428 1458659 1459228 - CDP-diacylglycerol/glycerol-3-phosphate 3-phosphatidyl transferase KEGG: nis:NIS_0697 CDP-diacylglycerol--glycerol-3- phosphate 3-phosphatidyltransferase~TIGRFAM: CDP-diacylglycerol/glycerol-3-phosphate 3- phosphatidyltransferase~PFAM: CDP-alcohol phosphatidyltransferase gene gene1480 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1428 Amico_1429 Amico_1429 Amico_1429 1459355 1460074 - ABC transporter related protein KEGG: dds:Ddes_1069 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1481 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1429 Amico_1430 Amico_1430 Amico_1430 1460067 1460855 - ABC transporter related protein KEGG: lip:LI0499 branched chain amino acid ABC transporter%2C ATP-binding protein~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1482 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1430 Amico_1431 Amico_1431 Amico_1431 1460852 1461898 - inner-membrane translocator PFAM: inner-membrane translocator~KEGG: lip:LI0498 branched chain amino acid ABC transporter%2C permease protein gene gene1483 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1431 Amico_1432 Amico_1432 Amico_1432 1461898 1462791 - inner-membrane translocator PFAM: inner-membrane translocator~KEGG: lip:LI0497 branched chain amino acid ABC transporter%2C permease protein gene gene1484 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1432 Amico_1433 Amico_1433 Amico_1433 1462887 1464020 - Extracellular ligand-binding receptor PFAM: Extracellular ligand-binding receptor~KEGG: dma:DMR_05860 ABC transporter substrate binding protein precursor gene gene1485 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1433 Amico_1434 Amico_1434 Amico_1434 1464154 1464615 - ATP-cone domain protein PFAM: ATP-cone domain protein~KEGG: mxa:MXAN_4765 transcriptional regulator NrdR gene gene1486 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1434 Amico_1435 Amico_1435 Amico_1435 1464687 1465151 - Protein of unknown function YOR215C PFAM: Protein of unknown function YOR215C%2C mitochondrial~KEGG: mxa:MXAN_5202 GatB/YqeY domain-containing protein gene gene1487 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1435 Amico_1436 Amico_1436 Amico_1436 1465158 1465346 - ribosomal protein S21 KEGG: ank:AnaeK_0755 30S ribosomal protein S21~TIGRFAM: ribosomal protein S21~PFAM: ribosomal protein S21 gene gene1488 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1436 Amico_1437 Amico_1437 Amico_1437 1465381 1465722 - histidine triad (HIT) protein PFAM: histidine triad (HIT) protein~KEGG: scl:sce9030 putative protein kinase C inhibitor gene gene1489 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1437 Amico_1438 Amico_1438 Amico_1438 1465907 1467211 - MiaB-like tRNA modifying enzyme TIGRFAM: MiaB-like tRNA modifying enzyme%3B RNA modification enzyme%2C MiaB family~PFAM: Radical SAM domain protein%3B Protein of unknown function UPF0004~KEGG: geo:Geob_1978 MiaB-like tRNA modifying enzyme~SMART: Elongator protein 3/MiaB/NifB gene gene1490 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1438 Amico_1439 Amico_1439 Amico_1439 1467208 1468074 - ribosomal L11 methyltransferase PFAM: ribosomal L11 methyltransferase~KEGG: dal:Dalk_2903 ribosomal protein L11 methyltransferase gene gene1491 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1439 Amico_1440 Amico_1440 Amico_1440 1468178 1469320 - chaperone protein DnaJ TIGRFAM: chaperone protein DnaJ~PFAM: chaperone DnaJ domain protein%3B DnaJ central domain protein%3B heat shock protein DnaJ domain protein~KEGG: tbd:Tbd_1539 molecular chaperone protein DnaJ~SMART: heat shock protein DnaJ domain protein gene gene1492 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1440 Amico_1441 Amico_1441 Amico_1441 1469334 1471157 - chaperone protein DnaK KEGG: gem:GM21_3574 chaperone protein DnaK~TIGRFAM: chaperone protein DnaK~PFAM: Heat shock protein 70 gene gene1493 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1441 Amico_1442 Amico_1442 Amico_1442 1471216 1471827 - GrpE protein PFAM: GrpE protein~KEGG: dal:Dalk_3616 GrpE protein gene gene1494 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1442 Amico_1443 Amico_1443 Amico_1443 1471848 1472867 - heat-inducible transcription repressor HrcA KEGG: gsu:GSU0031 heat-inducible transcription repressor HrcA~TIGRFAM: heat-inducible transcription repressor HrcA~PFAM: Negative regulator of class I heat shock protein gene gene1495 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1443 Amico_1444 Amico_1444 Amico_1444 1473047 1473697 + Phosphoglycerate mutase PFAM: Phosphoglycerate mutase~KEGG: rpi:Rpic_0374 phosphoglycerate mutase gene gene1496 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1444 Amico_1445 Amico_1445 Amico_1445 1473784 1475007 + dihydropteroate synthase TIGRFAM: dihydropteroate synthase~KEGG: sat:SYN_02778 dihydropteroate synthase~PFAM: dihydropteroate synthase DHPS gene gene1497 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1445 Amico_1446 Amico_1446 Amico_1446 1475007 1475498 + 2-amino-4-hydroxy-6-hydroxymethyldihydropteridin epyrophosphokinase TIGRFAM:2-amino-4-hydroxy-6-hydroxymethyldihydropter idinepyrophosphokinase~KEGG: mxa:MXAN_5925 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine pyrophosphokinase~PFAM: 78-dihydro-6-hydroxymethylpterin- pyrophosphokinase HPPK gene gene1498 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1446 Amico_1447 Amico_1447 Amico_1447 1475518 1476273 + hypothetical protein gene gene1499 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1447 Amico_1448 Amico_1448 Amico_1448 1476324 1476902 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen PFAM: alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen%3B Redoxin domain protein~KEGG: dol:Dole_2806 alkyl hydroperoxide reductase/thiol specific antioxidant/Mal allergen gene gene1500 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1448 Amico_1449 Amico_1449 Amico_1449 1476935 1477795 - pyruvate ferredoxin/flavodoxin oxidoreductase%2C beta subunit KEGG: ppd:Ppro_0548 pyruvate ferredoxin/flavodoxin oxidoreductase%2C beta subunit~TIGRFAM: pyruvate ferredoxin/flavodoxin oxidoreductase%2C beta subunit~PFAM: thiamine pyrophosphate protein domain protein TPP-binding gene gene1501 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1449 Amico_1450 Amico_1450 Amico_1450 1477792 1479537 - pyruvate flavodoxin/ferredoxin oxidoreductase domain protein PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein%3B Pyruvate/ketoisovalerate oxidoreductase~KEGG: dps:DP2103 2-oxoacid ferredoxin oxidoreductase%2C alpha subunit gene gene1502 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1450 Amico_1451 Amico_1451 Amico_1451 1479675 1479851 + hypothetical protein gene gene1503 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1451 Amico_1452 Amico_1452 Amico_1452 1479900 1481522 - carbon starvation protein CstA PFAM: carbon starvation protein CstA~KEGG: scl:sce6207 carbon starvation protein A gene gene1504 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1452 Amico_1453 Amico_1453 Amico_1453 1481593 1482018 - hypothetical protein gene gene1505 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1453 Amico_1454 Amico_1454 Amico_1454 1482335 1483621 - adenylosuccinate synthetase SMART: adenylosuccinate synthetase~TIGRFAM: adenylosuccinate synthetase~KEGG: gme:Gmet_3260 adenylosuccinate synthetase~PFAM: adenylosuccinate synthetase gene gene1507 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1454 Amico_1455 Amico_1455 Amico_1455 1483624 1484655 - protein of unknown function DUF610 YibQ PFAM: protein of unknown function DUF610 YibQ~KEGG: gbm:Gbem_1253 protein of unknown function DUF610 YibQ gene gene1508 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1455 Amico_1456 Amico_1456 Amico_1456 1484671 1485879 - carboxyl-terminal protease SMART: peptidase S41%3B PDZ/DHR/GLGF domain protein~TIGRFAM: carboxyl-terminal protease~KEGG: gme:Gmet_1853 peptidase S41A%2C C-terminal protease~PFAM: peptidase S41%3B PDZ/DHR/GLGF domain protein gene gene1509 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1456 Amico_1457 Amico_1457 Amico_1457 1485916 1487130 - Peptidase M23 PFAM: Peptidase M23~KEGG: dol:Dole_2452 peptidase M23B gene gene1510 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1457 Amico_1458 Amico_1458 Amico_1458 1487158 1488042 - protein of unknown function DUF214 PFAM: protein of unknown function DUF214~KEGG: dat:HRM2_11470 FtsX gene gene1511 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1458 Amico_1459 Amico_1459 Amico_1459 1488029 1488724 - ABC transporter related protein KEGG: ade:Adeh_0666 cell division ATP-binding protein FtsE~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1512 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1459 Amico_1460 Amico_1460 Amico_1460 1488727 1489680 - Transketolase central region PFAM: Transketolase central region%3B Transketolase domain protein~KEGG: gsu:GSU2918 transketolase%2C C-terminal subunit gene gene1513 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1460 Amico_1461 Amico_1461 Amico_1461 1489677 1490516 - Transketolase domain protein PFAM: Transketolase domain protein~KEGG: gme:Gmet_0551 transketolase subunit A gene gene1514 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1461 Amico_1462 Amico_1462 Amico_1462 1490500 1491519 - polysaccharide pyruvyl transferase CsaB KEGG: scl:sce2259 hypothetical protein~TIGRFAM: polysaccharide pyruvyl transferase CsaB~PFAM: polysaccharide pyruvyl transferase gene gene1515 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1462 Amico_1463 Amico_1463 Amico_1463 1491516 1493435 - hypothetical protein gene gene1516 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1463 Amico_1464 Amico_1464 Amico_1464 1493432 1494037 - maf protein KEGG: tgr:Tgr7_2272 Maf-like protein~TIGRFAM: maf protein~PFAM: Maf family protein gene gene1517 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1464 Amico_1465 Amico_1465 Amico_1465 1494022 1494270 - hypothetical protein gene gene1518 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1465 Amico_1466 Amico_1466 Amico_1466 1494277 1495080 - Bacitracin resistance protein BacA PFAM: Bacitracin resistance protein BacA~KEGG: dol:Dole_1174 bacitracin resistance protein BacA gene gene1519 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1466 Amico_1467 Amico_1467 Amico_1467 1495077 1496804 - beta-lactamase domain protein PFAM: beta-lactamase domain protein%3B RNA- metabolising metallo-beta-lactamase~KEGG: gme:Gmet_0366 hypothetical protein gene gene1520 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1467 Amico_1468 Amico_1468 Amico_1468 1496900 1497391 + transcription elongation factor GreA KEGG: sfu:Sfum_2089 transcription elongation factor GreA~TIGRFAM: transcription elongation factor GreA~PFAM: transcription elongation factor GreA/GreB domain protein gene gene1521 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1468 Amico_1469 Amico_1469 Amico_1469 1497421 1498407 - D-alanine/D-alanine ligase TIGRFAM: D-alanine/D-alanine ligase~KEGG: pca:Pcar_2199 D-alanine--D-alanine ligase~PFAM: D-alanine--D-alanine ligase domain protein%3B protein of unknown function DUF201 gene gene1522 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1469 Amico_1470 Amico_1470 Amico_1470 1498420 1500090 - OstA family protein PFAM: OstA family protein~KEGG: dat:HRM2_26760 OstA gene gene1523 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1470 Amico_1471 Amico_1471 Amico_1471 1500078 1500635 - hypothetical protein gene gene1524 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1471 Amico_1472 Amico_1472 Amico_1472 1500712 1501149 - hypothetical protein gene gene1525 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1472 Amico_1473 Amico_1473 Amico_1473 1501194 1502273 - hypothetical protein gene gene1526 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1473 Amico_1474 Amico_1474 Amico_1474 1502306 1503907 - CTP synthase TIGRFAM: CTP synthase~KEGG: pca:Pcar_1945 CTP synthetase~PFAM: CTP synthase-like%3B glutamine amidotransferase class-I gene gene1527 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1474 Amico_1475 Amico_1475 Amico_1475 1504020 1505531 - Peptidase M23 KEGG: hypothetical protein~PFAM: Peptidase M23%3B Peptidoglycan-binding lysin domain~SMART: Peptidoglycan-binding LysM gene gene1528 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1475 Amico_1476 Amico_1476 Amico_1476 1505567 1506844 - transcription termination factor Rho TIGRFAM: transcription termination factor Rho~PFAM: H+transporting two-sector ATPase alpha/beta subunit central region%3B Rho termination factor RNA- binding~KEGG: ppd:Ppro_2651 transcription termination factor Rho~SMART: Cold shock protein%3B AAA ATPase gene gene1529 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1476 Amico_1477 Amico_1477 Amico_1477 1506933 1507592 - transaldolase TIGRFAM: transaldolase~KEGG: sfu:Sfum_0051 putative transaldolase~PFAM: Transaldolase gene gene1530 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1477 Amico_1478 Amico_1478 Amico_1478 1507618 1508073 - hypothetical protein gene gene1531 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1478 Amico_1479 Amico_1479 Amico_1479 1508232 1508726 + protein of unknown function DUF1393 PFAM: protein of unknown function DUF1393~KEGG: vsp:VS_II0189 hypothetical protein gene gene1532 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1479 Amico_1480 Amico_1480 Amico_1480 1508680 1509561 - putative aspartate/glutamate/hydantoin racemase KEGG: cti:RALTA_B1244 putative aspartate/glutamate/hydantoin racemase gene gene1533 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1480 Amico_1481 Amico_1481 Amico_1481 1509564 1510523 - 6-phosphofructokinase TIGRFAM: 6-phosphofructokinase~KEGG: bba:Bd3384 hypothetical protein~PFAM: phosphofructokinase gene gene1534 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1481 Amico_1482 Amico_1482 Amico_1482 1510589 1511335 - hypothetical protein gene gene1535 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1482 Amico_1483 Amico_1483 Amico_1483 1511430 1511957 - hypothetical protein gene gene1536 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1483 Amico_1484 Amico_1484 Amico_1484 1512192 1513583 - S-layer domain protein PFAM: S-layer domain protein~KEGG: hypothetical protein gene gene1537 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1484 Amico_1485 Amico_1485 Amico_1485 1513873 1515087 - O-antigen polymerase PFAM: O-antigen polymerase~KEGG: msu:MS0243 RfaL protein gene gene1538 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1485 Amico_1486 Amico_1486 Amico_1486 1515118 1516119 - glycosyl transferase family 9 PFAM: glycosyl transferase family 9~KEGG: geo:Geob_2115 glycosyl transferase family 9 gene gene1539 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1486 Amico_1487 Amico_1487 Amico_1487 1516129 1517181 - glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: dol:Dole_1437 glycosyl transferase group 1 gene gene1540 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1487 Amico_1488 Amico_1488 Amico_1488 1517203 1518213 - glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: aby:ABAYE3345 putative glycosyltransferase gene gene1541 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1488 Amico_1489 Amico_1489 Amico_1489 1518210 1519331 - protein of unknown function DUF1022 PFAM: protein of unknown function DUF1022~KEGG: tbd:Tbd_1867 hypothetical protein gene gene1542 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1489 Amico_1490 Amico_1490 Amico_1490 1519341 1520075 - 3-deoxy-D-manno-octulosonatecytidylyltransferase TIGRFAM: 3-deoxy-D-manno-octulosonate cytidylyltransferase~KEGG: gur:Gura_2980 3-deoxy-manno-octulosonate cytidylyltransferase~PFAM: acylneuraminate cytidylyltransferase gene gene1543 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1490 Amico_1491 Amico_1491 Amico_1491 1520072 1521283 - hypothetical protein gene gene1544 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1491 Amico_1492 Amico_1492 Amico_1492 1521283 1522488 - Three-deoxy-D-manno-octulosonic-acid transferase domain protein PFAM: Three-deoxy-D-manno-octulosonic-acid transferase domain protein~KEGG: dal:Dalk_0350 three-deoxy-D-manno-octulosonic- acid transferase domain protein gene gene1545 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1492 Amico_1493 Amico_1493 Amico_1493 1522535 1523542 - KpsF/GutQ family protein SMART: CBS domain containing protein~TIGRFAM: KpsF/GutQ family protein~KEGG: pau:PA14_57890 hypothetical protein~PFAM: sugar isomerase (SIS)%3B CBS domain containing protein gene gene1546 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1493 Amico_1494 Amico_1494 Amico_1494 1523546 1524403 - 2-dehydro-3-deoxyphosphooctonate aldolase KEGG: dps:DP0765 2-dehydro-3-deoxyphosphooctonate aldolase~TIGRFAM: 2-dehydro-3-deoxyphosphooctonate aldolase~PFAM: DAHP synthetase I/KDSA gene gene1547 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1494 Amico_1495 Amico_1495 Amico_1495 1524378 1526651 - tetraacyldisaccharide 4'-kinase TIGRFAM: tetraacyldisaccharide 4'-kinase~KEGG: sat:SYN_01563 tetraacyldisaccharide 4'-kinase~PFAM: Tetraacyldisaccharide-1-P 4'-kinase gene gene1548 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1495 Amico_1496 Amico_1496 Amico_1496 1526635 1528389 - ABC transporter related protein KEGG: sat:SYN_01564 phospholipid-lipopolysaccharide ABC transporter~PFAM: ABC transporter related%3B ABC transporter transmembrane region~SMART: AAA ATPase gene gene1549 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1496 Amico_1497 Amico_1497 Amico_1497 1528382 1529488 - hypothetical protein KEGG: hypothetical protein%2C conserved gene gene1550 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1497 Amico_1498 Amico_1498 Amico_1498 1529485 1530582 - lipid-A-disaccharide synthase TIGRFAM: lipid-A-disaccharide synthase~KEGG: maq:Maqu_2535 lipid-A-disaccharide synthase~PFAM: glycosyl transferase family 19 gene gene1551 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1498 Amico_1499 Amico_1499 Amico_1499 1530567 1531379 - protein of unknown function DUF1009 KEGG: dal:Dalk_1792 protein of unknown function DUF1009 gene gene1552 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1499 Amico_1500 Amico_1500 Amico_1500 1531381 1532478 - permease YjgP/YjgQ family protein PFAM: permease YjgP/YjgQ family protein~KEGG: gur:Gura_3734 permease YjgP/YjgQ family protein gene gene1553 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1500 Amico_1501 Amico_1501 Amico_1501 1532468 1532986 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family TIGRFAM: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase%2C YrbI family%3B hydrolase%2C HAD-superfamily%2C subfamily IIIA~KEGG: dat:HRM2_27830 KdsC gene gene1554 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1501 Amico_1502 Amico_1502 Amico_1502 1532958 1533761 - acyl-(acyl-carrier-protein)--UDP-N-acetylglucosa mineO-acyltransferase KEGG: dol:Dole_2840 acyl-(acyl-carrier-protein)-- UDP-N-acetylglucosamine O-acyltransferase~TIGRFAM:acyl-[acyl-carrier-protein]--UDP-N-acetylglu cosamineO-acyltransferase gene gene1555 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1502 Amico_1503 Amico_1503 Amico_1503 1533764 1534222 - beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ KEGG: sfu:Sfum_3748 beta-hydroxyacyl-(acyl-carrier- protein) dehydratase FabZ~TIGRFAM: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ~PFAM: Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA/FabZ gene gene1556 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1503 Amico_1504 Amico_1504 Amico_1504 1534237 1535076 - UDP-3-0-acyl N-acetylglucosamine deacetylase KEGG: pla:Plav_2429 UDP-3-O-[3-hydroxymyristoyl] N- acetylglucosamine deacetylase~TIGRFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase~PFAM: UDP-3-0-acyl N-acetylglucosamine deacetylase gene gene1557 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1504 Amico_1505 Amico_1505 Amico_1505 1535073 1536122 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N- acyltransferase TIGRFAM: UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase~KEGG: bgl:bglu_1g12830 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase gene gene1558 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1505 Amico_1506 Amico_1506 Amico_1506 1536136 1537380 - hypothetical protein gene gene1559 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1506 Amico_1507 Amico_1507 Amico_1507 1537399 1539135 - surface antigen (D15) PFAM: surface antigen (D15)%3B surface antigen variable number repeat protein~KEGG: dma:DMR_38540 hypothetical protein gene gene1560 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1507 Amico_1508 Amico_1508 Amico_1508 1539168 1539797 - hypothetical protein KEGG: hypothetical protein gene gene1561 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1508 Amico_1509 Amico_1509 Amico_1509 1539857 1540447 - RNA polymerase%2C sigma 28 subunit%2C FliA/WhiG subfamily KEGG: nmu:Nmul_A2741 RNA polymerase factor sigma-32~TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein gene gene1562 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1509 Amico_1510 Amico_1510 Amico_1510 1540512 1541168 - Phosphoglycerate mutase PFAM: Phosphoglycerate mutase~KEGG: smt:Smal_0808 phosphoglycerate mutase gene gene1563 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1510 Amico_1511 Amico_1511 Amico_1511 1541743 1543767 + beta-lactamase PFAM: beta-lactamase~KEGG: bpy:Bphyt_5769 beta-lactamase gene gene1564 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1511 Amico_1512 Amico_1512 Amico_1512 1544345 1545745 - argininosuccinate lyase KEGG: dal:Dalk_0410 argininosuccinate lyase~TIGRFAM: argininosuccinate lyase~PFAM: fumarate lyase gene gene1568 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1512 Amico_1513 Amico_1513 Amico_1513 1545726 1546358 - protein of unknown function DUF501 PFAM: protein of unknown function DUF501~KEGG: mmw:Mmwyl1_3951 hypothetical protein gene gene1569 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1513 Amico_1514 Amico_1514 Amico_1514 1546355 1546774 - RNA binding S1 domain protein PFAM: RNA binding S1 domain protein~KEGG: S1 RNA binding domain containing protein gene gene1570 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1514 Amico_1515 Amico_1515 Amico_1515 1546957 1547319 - response regulator receiver protein KEGG: mxa:MXAN_6693 fibril biogenesis regulator DifD~PFAM: response regulator receiver~SMART: response regulator receiver gene gene1571 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1515 Amico_1516 Amico_1516 Amico_1516 1547404 1548189 - GTP-sensing pleiotropic transcriptional repressor CodY PFAM: GTP-sensing transcriptional pleiotropic repressor CodY%3B Helix-turn-helix CodY domain protein gene gene1572 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1516 Amico_1517 Amico_1517 Amico_1517 1548271 1549677 - heat shock protein HslVU%2C ATPase subunit HslU TIGRFAM: heat shock protein HslVU%2C ATPase subunit HslU~PFAM: ATPase AAA-2 domain protein~KEGG: pca:Pcar_2412 ATP-dependent protease ATP- binding subunit~SMART: AAA ATPase gene gene1573 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1517 Amico_1518 Amico_1518 Amico_1518 1549674 1550216 - 20S proteasome A and B subunits PFAM: 20S proteasome A and B subunits~KEGG: tgr:Tgr7_0056 20S proteasome A and B subunits gene gene1574 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1518 Amico_1519 Amico_1519 Amico_1519 1550209 1551102 - integrase family protein PFAM: integrase family protein%3B integrase domain protein SAM domain protein~KEGG: mxa:MXAN_3010 phage integrase family site specific recombinase gene gene1575 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1519 Amico_1520 Amico_1520 Amico_1520 1551291 1552607 - gid protein TIGRFAM: gid protein~KEGG: dps:DP1969 tRNA (uracil-5-)-methyltransferase Gid~PFAM: glucose-inhibited division protein A gene gene1576 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1520 Amico_1521 Amico_1521 Amico_1521 1552611 1554746 - DNA topoisomerase I SMART: DNA topoisomerase I DNA-binding%3B DNA topoisomerase I ATP-binding%3B Toprim sub domain protein~TIGRFAM: DNA topoisomerase I~KEGG: ank:AnaeK_2792 DNA topoisomerase I~PFAM: DNA topoisomerase type IA central domain protein%3B TOPRIM domain protein%3B DNA topoisomerase type IA zn finger domain protein gene gene1577 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1521 Amico_1522 Amico_1522 Amico_1522 1554761 1555033 - hypothetical protein gene gene1578 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1522 Amico_1523 Amico_1523 Amico_1523 1555048 1556154 - DNA protecting protein DprA KEGG: ppd:Ppro_0529 DNA protecting protein DprA~TIGRFAM: DNA protecting protein DprA~PFAM: SMF family protein gene gene1579 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1523 Amico_1524 Amico_1524 Amico_1524 1556151 1557653 - Mg chelatase%2C subunit ChlI TIGRFAM: Mg chelatase%2C subunit ChlI~PFAM: magnesium chelatase ChlI subunit%3B ATPase associated with various cellular activities AAA_5~KEGG: xcv:XCV4047 putative competence related protein~SMART: AAA ATPase gene gene1580 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1524 Amico_1525 Amico_1525 Amico_1525 1557650 1558021 - protein of unknown function UPF0102 PFAM: protein of unknown function UPF0102~KEGG: maq:Maqu_2464 hypothetical protein gene gene1581 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1525 Amico_1526 Amico_1526 Amico_1526 1558188 1558775 - Ribonuclease H KEGG: msu:MS0423 ribonuclease HII~PFAM: ribonuclease HII/HIII gene gene1582 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1526 Amico_1527 Amico_1527 Amico_1527 1558760 1559596 - ribosome biogenesis GTP-binding protein YlqF KEGG: gur:Gura_1604 GTP-binding protein%2C HSR1- related~TIGRFAM: ribosome biogenesis GTP-binding protein YlqF~PFAM: GTP-binding protein HSR1-related gene gene1583 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1527 Amico_1528 Amico_1528 Amico_1528 1559598 1560137 - signal peptidase I TIGRFAM: signal peptidase I~KEGG: dvu:DVU0704 signal peptidase I~PFAM: Peptidase S24/S26A/S26B%2C conserved region gene gene1584 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1528 Amico_1529 Amico_1529 Amico_1529 1560235 1560720 - hypothetical protein gene gene1585 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1529 Amico_1530 Amico_1530 Amico_1530 1560737 1561291 - Pyruvate/ketoisovalerate oxidoreductase PFAM: Pyruvate/ketoisovalerate oxidoreductase~KEGG: nam:NAMH_0991 indolepyruvate oxidoreductase subunit IorB gene gene1586 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1530 Amico_1531 Amico_1531 Amico_1531 1561296 1563164 - indolepyruvate ferredoxin oxidoreductase%2C alpha subunit TIGRFAM: indolepyruvate ferredoxin oxidoreductase%2C alpha subunit~KEGG: dat:HRM2_21470 IorA2~PFAM: thiamine pyrophosphate protein domain protein TPP-binding%3B 4Fe-4S ferredoxin iron-sulfur binding domain protein gene gene1587 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1531 Amico_1532 Amico_1532 Amico_1532 1563164 1563580 - thioesterase superfamily protein PFAM: thioesterase superfamily protein~KEGG: mxa:MXAN_4456 thioesterase family protein gene gene1588 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1532 Amico_1533 Amico_1533 Amico_1533 1563725 1564147 - CoA-binding domain protein PFAM: CoA-binding domain protein~KEGG: maq:Maqu_3784 CoA-binding domain-containing protein gene gene1589 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1533 Amico_1534 Amico_1534 Amico_1534 1564505 1565494 - MgtE integral membrane region PFAM: MgtE integral membrane region%3B CBS domain containing protein~KEGG: hha:Hhal_1722 magnesium transporter gene gene1591 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1534 Amico_1535 Amico_1535 Amico_1535 1565981 1567003 + Ornithine cyclodeaminase KEGG: rso:RS00875 ornithine cyclodeaminase protein~PFAM: ornithine cyclodeaminase/mu-crystallin%3B Shikimate/quinate 5-dehydrogenase gene gene1592 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1535 Amico_1536 Amico_1536 Amico_1536 1567094 1567612 - signal peptidase I TIGRFAM: signal peptidase I~KEGG: glo:Glov_1621 signal peptidase I~PFAM: Peptidase S24/S26A/S26B%2C conserved region gene gene1593 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1536 Amico_1537 Amico_1537 Amico_1537 1567786 1569456 - Formate--tetrahydrofolate ligase KEGG: pmr:PMI0670 formate--tetrahydrofolate ligase~PFAM: formate-tetrahydrofolate ligase FTHFS gene gene1594 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1537 Amico_1538 Amico_1538 Amico_1538 1569573 1570196 - Methenyltetrahydrofolate cyclohydrolase KEGG: mca:MCA0507 methenyltetrahydrofolate cyclohydrolase~PFAM: Formiminotransferase-cyclodeaminase gene gene1595 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1538 Amico_1539 Amico_1539 Amico_1539 1570203 1571123 - glutamate formiminotransferase TIGRFAM: glutamate formiminotransferase~KEGG: sat:SYN_00461 glutamate formiminotransferase~PFAM: Formiminotransferase domain protein gene gene1596 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1539 Amico_1540 Amico_1540 Amico_1540 1571213 1572256 - TRAP dicarboxylate transporter%2C DctP subunit KEGG: vsp:VS_II0052 putative C4-dicarboxylate- binding periplasmic protein DctP~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene1597 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1540 Amico_1541 Amico_1541 Amico_1541 1572340 1573617 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: maq:Maqu_0352 TRAP dicarboxylate transporter%2C DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1598 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1541 Amico_1542 Amico_1542 Amico_1542 1573633 1574175 - Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: pin:Ping_2034 tripartite ATP-independent periplasmic transporter DctQ gene gene1599 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1542 Amico_1543 Amico_1543 Amico_1543 1574194 1575354 - peptidase M20 PFAM: peptidase M20%3B peptidase dimerisation domain protein~KEGG: kpe:KPK_2645 peptidase%2C ArgE/DapE family gene gene1600 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1543 Amico_1544 Amico_1544 Amico_1544 1575462 1576997 - transcriptional regulator%2C CdaR KEGG: pfs:PFLU2110 hypothetical protein gene gene1601 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1544 Amico_1545 Amico_1545 Amico_1545 1577147 1577992 - Methylenetetrahydrofolate dehydrogenase (NADP(+)) KEGG: geo:Geob_1799 methylenetetrahydrofolate dehydrogenase (NADP(+))~PFAM: tetrahydrofolate dehydrogenase/cyclohydrolase gene gene1602 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1545 Amico_1546 Amico_1546 Amico_1546 1578013 1579683 - Formate--tetrahydrofolate ligase KEGG: pmr:PMI0670 formate--tetrahydrofolate ligase~PFAM: formate-tetrahydrofolate ligase FTHFS gene gene1603 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1546 Amico_1547 Amico_1547 Amico_1547 1579837 1581231 - protein of unknown function UPF0027 PFAM: protein of unknown function UPF0027~KEGG: pca:Pcar_0019 hypothetical protein gene gene1604 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1547 Amico_1548 Amico_1548 Amico_1548 1581247 1581747 - protein of unknown function DUF101 PFAM: protein of unknown function DUF101~KEGG: sat:SYN_02047 putative cytoplasmic protein gene gene1605 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1548 Amico_1549 Amico_1549 Amico_1549 1581840 1582961 - sodium ion-translocating decarboxylase%2C beta subunit TIGRFAM: sodium ion-translocating decarboxylase%2C beta subunit~KEGG: sfu:Sfum_3585 sodium ion-translocating decarboxylase%2C beta subunit~PFAM: Na+transporting methylmalonyl- CoA/oxaloacetate decarboxylase beta subunit gene gene1606 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1549 Amico_1550 Amico_1550 Amico_1550 1583207 1584340 + protein of unknown function DUF362 PFAM: protein of unknown function DUF362%3B 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: gsu:GSU0494 iron-sulfur cluster-binding protein gene gene1607 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1550 Amico_1551 Amico_1551 Amico_1551 1584430 1584714 - hypothetical protein gene gene1608 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1551 Amico_1552 Amico_1552 Amico_1552 1584702 1585175 - Ni%2CFe-hydrogenase maturation factor KEGG: hch:HCH_00104 Ni%2CFe-hydrogenase maturation factor gene gene1609 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1552 Amico_1553 Amico_1553 Amico_1553 1585268 1586701 - nickel-dependent hydrogenase large subunit PFAM: nickel-dependent hydrogenase large subunit~KEGG: sfu:Sfum_2716 nickel-dependent hydrogenase%2C large subunit gene gene1610 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1553 Amico_1554 Amico_1554 Amico_1554 1586723 1587262 - NADH ubiquinone oxidoreductase 20 kDa subunit PFAM: NADH ubiquinone oxidoreductase 20 kDa subunit~KEGG: pin:Ping_1216 hydrogen dehydrogenase gene gene1611 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1554 Amico_1555 Amico_1555 Amico_1555 1587266 1589290 - NADH:ubiquinone oxidoreductase%2C subunit G%2C iron- sulfur binding protein PFAM: NADH:ubiquinone oxidoreductase%2C subunit G%2C iron-sulphur binding%3B molybdopterin oxidoreductase%3B ferredoxin%3B 4Fe-4S ferredoxin iron-sulfur binding domain protein%3B molybdopterin oxidoreductase Fe4S4 region~KEGG: sfu:Sfum_3509 formate dehydrogenase%2C alpha subunit gene gene1612 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1555 Amico_1556 Amico_1556 Amico_1556 1589312 1591105 - NADH dehydrogenase (quinone) KEGG: dat:HRM2_16600 NuoF~PFAM: Respiratory-chain NADH dehydrogenase domain 51 kDa subunit%3B NADH ubiquinone oxidoreductase%2C F subunit%2C iron sulphur binding%3B Soluble ligand binding domain%3B 4Fe- 4S ferredoxin iron-sulfur binding domain protein gene gene1613 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1556 Amico_1557 Amico_1557 Amico_1557 1591120 1591488 - NADP-reducing hydrogenase%2C subunit B KEGG: dat:HRM2_16520 NADP-reducing hydrogenase%2C subunit B gene gene1614 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1557 Amico_1558 Amico_1558 Amico_1558 1591503 1591973 - NADH dehydrogenase (ubiquinone) 24 kDa subunit PFAM: NADH dehydrogenase (ubiquinone) 24 kDa subunit~KEGG: pca:Pcar_0833 NADH:ubiquinone oxidoreductase 24 kD subunit gene gene1615 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1558 Amico_1559 Amico_1559 Amico_1559 1592371 1593060 - ABC transporter related protein KEGG: dat:HRM2_17600 HTH-type transcriptional regulator~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1616 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1559 Amico_1560 Amico_1560 Amico_1560 1593057 1593752 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: dde:Dde_0233 ABC transporter%2C permease protein gene gene1617 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1560 Amico_1561 Amico_1561 Amico_1561 1593827 1594657 - ABC transporter%2C periplasmic substrate-binding protein KEGG: dde:Dde_0234 ABC transporter%2C periplasmic substrate-binding protein gene gene1618 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1561 Amico_1562 Amico_1562 Amico_1562 1594791 1596170 - MATE efflux family protein KEGG: dal:Dalk_2553 MATE efflux family protein~TIGRFAM: MATE efflux family protein~PFAM: multi antimicrobial extrusion protein MatE gene gene1619 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1562 Amico_1563 Amico_1563 Amico_1563 1596214 1597875 - hypothetical protein KEGG: dma:DMR_26700 hypothetical protein gene gene1620 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1563 Amico_1564 Amico_1564 Amico_1564 1598102 1600138 + anaerobic ribonucleoside-triphosphate reductase KEGG: sat:SYN_03522 anaerobic ribonucleoside triphosphate reductase~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase~PFAM: ATP-cone domain protein gene gene1621 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1564 Amico_1565 Amico_1565 Amico_1565 1600135 1600824 + anaerobic ribonucleoside-triphosphate reductase activating protein KEGG: dol:Dole_2569 anaerobic ribonucleoside- triphosphate reductase activating protein~TIGRFAM: anaerobic ribonucleoside-triphosphate reductase activating protein~PFAM: Radical SAM domain protein gene gene1622 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1565 Amico_1566 Amico_1566 Amico_1566 1600857 1601012 + pseudogene gene1623 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1566 Amico_1567 Amico_1567 Amico_1567 1601122 1602660 + ABC transporter related protein KEGG: rlt:Rleg2_6253 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1624 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1567 Amico_1568 Amico_1568 Amico_1568 1602657 1603712 + inner-membrane translocator PFAM: inner-membrane translocator~KEGG: smd:Smed_3656 inner-membrane translocator gene gene1625 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1568 Amico_1569 Amico_1569 Amico_1569 1603716 1604576 + inner-membrane translocator PFAM: inner-membrane translocator~KEGG: smd:Smed_3657 inner-membrane translocator gene gene1626 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1569 Amico_1570 Amico_1570 Amico_1570 1604608 1605612 + basic membrane lipoprotein PFAM: basic membrane lipoprotein~KEGG: smd:Smed_3654 basic membrane lipoprotein gene gene1627 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1570 Amico_1571 Amico_1571 Amico_1571 1605640 1607283 + 5'-Nucleotidase domain protein PFAM: 5'-Nucleotidase domain protein%3B metallophosphoesterase~KEGG: sun:SUN_0890 5'-nucleotidase gene gene1628 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1571 Amico_1572 Amico_1572 Amico_1572 1607343 1607912 - phage SPO1 DNA polymerase-related protein KEGG: glo:Glov_3339 phage SPO1 DNA polymerase- related protein~TIGRFAM: phage SPO1 DNA polymerase-related protein~PFAM: Uracil-DNA glycosylase superfamily gene gene1629 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1572 Amico_1573 Amico_1573 Amico_1573 1608062 1608853 + hypothetical protein KEGG: dma:DMR_30070 hypothetical protein gene gene1630 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1573 Amico_1574 Amico_1574 Amico_1574 1608906 1609895 + lipoyltransferase and lipoate-protein ligase TIGRFAM: lipoyltransferase and lipoate-protein ligase~KEGG: dma:DMR_11630 lipoate-protein ligase~PFAM: Lipoate protein ligase-like%3B biotin/lipoate A/B protein ligase gene gene1631 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1574 Amico_1575 Amico_1575 Amico_1575 1609882 1610994 - ABC transporter related protein KEGG: sfu:Sfum_3496 ABC transporter related~PFAM: ABC transporter related%3B Transport-associated OB domain protein~SMART: AAA ATPase gene gene1632 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1575 Amico_1576 Amico_1576 Amico_1576 1610999 1612693 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: rlg:Rleg_6062 binding-protein-dependent transport systems inner membrane component gene gene1633 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1576 Amico_1577 Amico_1577 Amico_1577 1612773 1613783 - extracellular solute-binding protein family 1 PFAM: extracellular solute-binding protein family 1~KEGG: pmr:PMI0190 ferric ABC transporter%2C iron- binding protein gene gene1634 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1577 Amico_1578 Amico_1578 Amico_1578 1614153 1615160 + lipoyltransferase and lipoate-protein ligase TIGRFAM: lipoyltransferase and lipoate-protein ligase~KEGG: prw:PsycPRwf_0070 lipoyltransferase and lipoate-protein ligase~PFAM: biotin/lipoate A/B protein ligase%3B Lipoate protein ligase-like gene gene1635 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1578 Amico_1579 Amico_1579 Amico_1579 1615181 1616272 + glycine cleavage system T protein KEGG: afw:Anae109_2522 glycine cleavage system aminomethyltransferase T~TIGRFAM: glycine cleavage system T protein~PFAM: glycine cleavage T protein (aminomethyl transferase)%3B Glycine cleavage T-protein barrel gene gene1636 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1579 Amico_1580 Amico_1580 Amico_1580 1616296 1616697 + glycine cleavage system H protein KEGG: Os02g0170100%3B hypothetical protein %3B K02437 glycine cleavage system H protein~TIGRFAM: glycine cleavage system H protein~PFAM: glycine cleavage H-protein gene gene1637 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1580 Amico_1581 Amico_1581 Amico_1581 1616701 1618047 + Glycine dehydrogenase (decarboxylating) KEGG: glo:Glov_2672 glycine dehydrogenase subunit 1~PFAM: Glycine cleavage system P-protein-like gene gene1638 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1581 Amico_1582 Amico_1582 Amico_1582 1618044 1619507 + Glycine dehydrogenase (decarboxylating) KEGG: mca:MCA0348 glycine dehydrogenase subunit 2~PFAM: Glycine cleavage system P-protein-like gene gene1639 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1582 Amico_1583 Amico_1583 Amico_1583 1619590 1620945 + pyridine nucleotide-disulfide oxidoreductase dimerization region PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region%3B FAD-dependent pyridine nucleotide- disulphide oxidoreductase%3B glucose-inhibited division protein A%3B HI0933 family protein~KEGG: geo:Geob_1950 dihydrolipoamide dehydrogenase gene gene1640 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1583 Amico_1584 Amico_1584 Amico_1584 1620995 1622482 - dihydrolipoamide dehydrogenase KEGG: GSVIVT00019672001%3B hypothetical protein LOC100246037 %3B K00382 dihydrolipoamide dehydrogenase~TIGRFAM: dihydrolipoamide dehydrogenase~PFAM: pyridine nucleotide-disulphide oxidoreductase dimerisation region%3B FAD-dependent pyridine nucleotide- disulphide oxidoreductase%3B glucose-inhibited division protein A gene gene1641 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1584 Amico_1585 Amico_1585 Amico_1585 1622510 1623766 - catalytic domain of components of various dehydrogenase complexes PFAM: catalytic domain of components of various dehydrogenase complexes%3B E3 binding domain protein%3B biotin/lipoyl attachment domain-containing protein~KEGG: dat:HRM2_47640 PdhC gene gene1642 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1585 Amico_1586 Amico_1586 Amico_1586 1623789 1625090 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: dat:HRM2_45580 DctM10~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1643 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1586 Amico_1587 Amico_1587 Amico_1587 1625101 1625571 - Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: dat:HRM2_45590 DctQ10 gene gene1644 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1587 Amico_1588 Amico_1588 Amico_1588 1625638 1626711 - TRAP dicarboxylate transporter%2C DctP subunit KEGG: dat:HRM2_45600 DctP10~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene1645 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1588 Amico_1589 Amico_1589 Amico_1589 1626846 1627322 - protein of unknown function DUF296 PFAM: protein of unknown function DUF296~KEGG: bba:Bd1709 putative DNA-binding protein gene gene1646 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1589 Amico_1590 Amico_1590 Amico_1590 1627338 1628309 - Transketolase central region PFAM: Transketolase central region%3B Transketolase domain protein~KEGG: dat:HRM2_47610 PdhB gene gene1647 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1590 Amico_1591 Amico_1591 Amico_1591 1628325 1629329 - Pyruvate dehydrogenase (acetyl-transferring) KEGG: dat:HRM2_47620 PdhA~PFAM: dehydrogenase E1 component gene gene1648 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1591 Amico_1592 Amico_1592 Amico_1592 1629389 1630018 - transcriptional regulator%2C GntR family KEGG: bbr:BB3957 putative transcriptional regulator~PFAM: GntR domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene1649 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1592 Amico_1593 Amico_1593 Amico_1593 1630346 1630855 + Appr-1-p processing domain protein KEGG: mes:Meso_0923 Appr-1-p processing~PFAM: Appr-1-p processing domain protein~SMART: Appr-1-p processing domain protein gene gene1650 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1593 Amico_1594 Amico_1594 Amico_1594 1630874 1631335 - hypothetical protein gene gene1651 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1594 Amico_1595 Amico_1595 Amico_1595 1631356 1631727 - hypothetical protein gene gene1652 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1595 Amico_1596 Amico_1596 Amico_1596 1631828 1632406 - orotate phosphoribosyltransferase KEGG: nis:NIS_1844 orotate phosphoribosyltransferase~TIGRFAM: orotate phosphoribosyltransferase~PFAM: phosphoribosyltransferase gene gene1653 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1596 Amico_1597 Amico_1597 Amico_1597 1632391 1633113 - orotidine 5'-phosphate decarboxylase TIGRFAM: orotidine 5'-phosphate decarboxylase~KEGG: mei:Msip34_1100 orotidine 5'-phosphate decarboxylase~PFAM: Orotidine 5'-phosphate decarboxylase gene gene1654 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1597 Amico_1598 Amico_1598 Amico_1598 1633114 1634049 - dihydroorotate dehydrogenase family protein KEGG: dat:HRM2_29470 PyrD~TIGRFAM: dihydroorotate dehydrogenase family protein~PFAM: dihydroorotate oxidase gene gene1655 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1598 Amico_1599 Amico_1599 Amico_1599 1634036 1634809 - Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulfur cluster binding domain protein PFAM: Dihydroorotate dehydrogenase%2C electron transfer subunit%2C iron-sulphur cluster binding domain%3B Oxidoreductase FAD-binding domain protein%3B oxidoreductase FAD/NAD(P)-binding domain protein~KEGG: pca:Pcar_1295 2-polyprenylphenol hydroxylase/flavodoxin oxidoreductase gene gene1656 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1599 Amico_1600 Amico_1600 Amico_1600 1634796 1636106 - dihydroorotase%2C multifunctional complex type KEGG: ppd:Ppro_2528 dihydroorotase%2C multifunctional complex type~TIGRFAM: dihydroorotase%2C multifunctional complex type~PFAM: amidohydrolase%3B Amidohydrolase 3 gene gene1657 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1600 Amico_1601 Amico_1601 Amico_1601 1636103 1637032 - aspartate carbamoyltransferase TIGRFAM: aspartate carbamoyltransferase~KEGG: geo:Geob_3264 aspartate carbamoyltransferase~PFAM: aspartate/ornithine carbamoyltransferase carbamoyl-P binding domain%3B aspartate/ornithine carbamoyltransferase Asp/Orn-binding region gene gene1658 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1601 Amico_1602 Amico_1602 Amico_1602 1637032 1637589 - Uracil phosphoribosyltransferase KEGG: dvm:DvMF_0160 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase~PFAM: phosphoribosyltransferase gene gene1659 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1602 Amico_1603 Amico_1603 Amico_1603 1637784 1638995 - aminotransferase class I and II PFAM: aminotransferase class I and II~KEGG: fph:Fphi_0426 aspartate aminotransferase gene gene1660 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1603 Amico_1604 Amico_1604 Amico_1604 1639072 1639926 - 3-methyl-2-oxobutanoatehydroxymethyltransferase TIGRFAM: 3-methyl-2-oxobutanoate hydroxymethyltransferase~KEGG: sat:SYN_02773 3-methyl-2-oxobutanoate hydroxymethyltransferase~PFAM: Ketopantoate hydroxymethyltransferase gene gene1661 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1604 Amico_1605 Amico_1605 Amico_1605 1639958 1640728 - transcriptional regulator%2C IclR family KEGG: ecj:JW0265 predicted DNA-binding transcriptional regulator~PFAM: Transcriptional regulator IclR %3B regulatory protein IclR~SMART: regulatory protein IclR gene gene1662 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1605 Amico_1606 Amico_1606 Amico_1606 1640875 1641714 - Dipeptidylaminopeptidase/acylaminoacyl-peptidase-like protein KEGG: nmu:Nmul_A2092 hypothetical protein gene gene1663 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1606 Amico_1607 Amico_1607 Amico_1607 1641730 1642515 - exodeoxyribonuclease III KEGG: sat:SYN_00429 exodeoxyribonuclease III~TIGRFAM: exodeoxyribonuclease III%3B exodeoxyribonuclease III Xth~PFAM: Endonuclease/exonuclease/phosphatase gene gene1664 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1607 Amico_1608 Amico_1608 Amico_1608 1642638 1643546 - protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane~KEGG: gsu:GSU2676 hypothetical protein gene gene1665 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1608 Amico_1609 Amico_1609 Amico_1609 1643561 1644580 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding~KEGG: vei:Veis_3447 D-isomer specific 2-hydroxyacid dehydrogenase%2C NAD-binding gene gene1666 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1609 Amico_1610 Amico_1610 Amico_1610 1644722 1645195 + Rubrerythrin PFAM: Rubrerythrin~KEGG: atc:AGR_C_430 hypothetical protein gene gene1667 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1610 Amico_1611 Amico_1611 Amico_1611 1645259 1646749 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: ppr:PBPRA1287 long-chain-fatty acid-CoAligase gene gene1668 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1611 Amico_1612 Amico_1612 Amico_1612 1646888 1648054 + amidohydrolase KEGG: gsu:GSU0448 hydrolase%2C putative~TIGRFAM: amidohydrolase~PFAM: peptidase M20%3B peptidase dimerisation domain protein gene gene1669 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1612 Amico_1613 Amico_1613 Amico_1613 1648139 1648555 - hypothetical protein gene gene1670 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1613 Amico_1614 Amico_1614 Amico_1614 1648631 1649395 + 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole- carboxylate (AIR) carboxylase~KEGG: wsu:WS0137 NCAIR mutase (PurE)-related protein gene gene1671 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1614 Amico_1615 Amico_1615 Amico_1615 1649528 1650748 + HAD superfamily hydrolase KEGG: sfu:Sfum_0396 HAD superfamily hydrolase gene gene1672 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1615 Amico_1616 Amico_1616 Amico_1616 1650767 1651951 - amidohydrolase TIGRFAM: amidohydrolase~KEGG: bpt:Bpet5007 putative hydrolase~PFAM: peptidase M20%3B peptidase dimerisation domain protein gene gene1673 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1616 Amico_1617 Amico_1617 Amico_1617 1652109 1652519 + Thioredoxin domain protein Contains selenocysteine gene gene1674 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1617 Amico_1618 Amico_1618 Amico_1618 1652534 1653238 + cytochrome c biogenesis protein transmembrane region PFAM: cytochrome c biogenesis protein transmembrane region~KEGG: ank:AnaeK_4015 cytochrome c biogenesis protein transmembrane region gene gene1675 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1618 Amico_1619 Amico_1619 Amico_1619 1653655 1654377 - alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Contains selenocysteine gene gene1676 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1619 Amico_1620 Amico_1620 Amico_1620 1654947 1656812 + GTP-binding protein TypA KEGG: pca:Pcar_1211 GTP-binding protein TypA~TIGRFAM: GTP-binding protein TypA%3B small GTP- binding protein~PFAM: protein synthesis factor GTP-binding%3B elongation factor G domain protein%3B elongation factor Tu domain 2 protein gene gene1677 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1620 Amico_1621 Amico_1621 Amico_1621 1656934 1659318 - diguanylate cyclase with GAF sensor TIGRFAM: diguanylate cyclase~PFAM: GGDEF domain containing protein%3B GAF domain protein~KEGG: gme:Gmet_2721 diguanylate cyclase with GAF sensor~SMART: GGDEF domain containing protein%3B GAF domain protein gene gene1678 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1621 Amico_1622 Amico_1622 Amico_1622 1659424 1660434 + Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) KEGG: gme:Gmet_0008 NAD(P)H-dependent glycerol-3- phosphate dehydrogenase~PFAM: NAD-dependent glycerol-3-phosphate dehydrogenase domain protein gene gene1679 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1622 Amico_1623 Amico_1623 Amico_1623 1660519 1660692 + 4Fe-4S ferredoxin iron-sulfur binding domain protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: ppd:Ppro_2229 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein gene gene1680 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1623 Amico_1624 Amico_1624 Amico_1624 1660769 1661122 - Cupin 2 conserved barrel domain protein PFAM: Cupin 2 conserved barrel domain protein~KEGG: asu:Asuc_1498 cupin 2 domain-containing protein gene gene1681 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1624 Amico_1625 Amico_1625 Amico_1625 1661137 1663308 - putative PAS/PAC sensor protein TIGRFAM: PAS sensor protein~PFAM: PAS fold domain protein%3B PAS fold-4 domain protein~KEGG: sat:SYN_00099 two-component response regulator~SMART: PAS domain containing protein gene gene1682 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1625 Amico_1626 Amico_1626 Amico_1626 1663333 1663608 - hypothetical protein gene gene1683 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1626 Amico_1627 Amico_1627 Amico_1627 1663686 1664819 - RNA polymerase%2C sigma 70 subunit%2C RpoD subfamily KEGG: aci:ACIAD2925 sigma D (sigma 70) factor of RNA polymerase%2C major sigma factor during exponential growth~TIGRFAM: RNA polymerase sigma factor RpoD%3B RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 3 domain protein%3B sigma-70 region 2 domain protein%3B sigma-70 region 1.2%3B Bacterio- opsin activator HTH domain protein%3B sigma-70 1.1 domain protein%3B sigma-70 region 4 domain protein gene gene1684 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1627 Amico_1628 Amico_1628 Amico_1628 1665142 1666758 + peptidase U34 dipeptidase PFAM: peptidase U34 dipeptidase~KEGG: sun:SUN_0886 dipeptidase gene gene1685 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1628 Amico_1629 Amico_1629 Amico_1629 1666778 1667362 + hypothetical protein gene gene1686 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1629 Amico_1630 Amico_1630 Amico_1630 1667433 1668761 + hypothetical protein KEGG: aha:AHA_2628 arginine/ornithine antiporter gene gene1687 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1630 Amico_1631 Amico_1631 Amico_1631 1668768 1668932 + hypothetical protein gene gene1688 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1631 Amico_1632 Amico_1632 Amico_1632 1668949 1669641 + hypothetical protein gene gene1689 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1632 Amico_1633 Amico_1633 Amico_1633 1669699 1670118 + hypothetical protein gene gene1690 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1633 Amico_1634 Amico_1634 Amico_1634 1670175 1671818 + peptidase U34 dipeptidase PFAM: peptidase U34 dipeptidase~KEGG: sun:SUN_0886 dipeptidase gene gene1691 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1634 Amico_1635 Amico_1635 Amico_1635 1671882 1672553 - hypothetical protein gene gene1692 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1635 Amico_1636 Amico_1636 Amico_1636 1672676 1674049 + MATE efflux family protein KEGG: dal:Dalk_2553 MATE efflux family protein~TIGRFAM: MATE efflux family protein~PFAM: multi antimicrobial extrusion protein MatE gene gene1693 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1636 Amico_1637 Amico_1637 Amico_1637 1674055 1674660 + SNARE associated Golgi protein-related protein PFAM: SNARE associated Golgi protein~KEGG: abu:Abu_2024 hypothetical protein gene gene1694 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1637 Amico_1638 Amico_1638 Amico_1638 1674686 1676473 - protein of unknown function DUF255 PFAM: protein of unknown function DUF255~KEGG: sat:SYN_01448 thymidylate kinase gene gene1695 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1638 Amico_1639 Amico_1639 Amico_1639 1676514 1676819 - branched-chain amino acid transport PFAM: branched-chain amino acid transport gene gene1696 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1639 Amico_1640 Amico_1640 Amico_1640 1676816 1677523 - AzlC family protein PFAM: AzlC family protein~KEGG: sfu:Sfum_0194 AzlC family protein gene gene1697 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1640 Amico_1641 Amico_1641 Amico_1641 1677536 1678159 - HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 KEGG: bcm:Bcenmc03_5521 HAD family hydrolase~TIGRFAM: HAD-superfamily hydrolase%2C subfamily IA%2C variant 1~PFAM: Haloacid dehalogenase domain protein hydrolase gene gene1698 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1641 Amico_1642 Amico_1642 Amico_1642 1678324 1679415 + Homoserine dehydrogenase KEGG: ank:AnaeK_4040 homoserine dehydrogenase~PFAM: homoserine dehydrogenase%3B homoserine dehydrogenase NAD-binding gene gene1699 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1642 Amico_1643 Amico_1643 Amico_1643 1679457 1682390 + hypothetical protein KEGG: noc:Noc_0987 hypothetical protein gene gene1700 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1643 Amico_1644 Amico_1644 Amico_1644 1682368 1685889 + Exodeoxyribonuclease V KEGG: bja:blr8088 hypothetical protein~PFAM: UvrD/REP helicase gene gene1701 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1644 Amico_1645 Amico_1645 Amico_1645 1685894 1686793 - Protein of unknown function DUF2179 PFAM: Protein of unknown function DUF2179%3B protein of unknown function DUF161~KEGG: dvl:Dvul_0536 hypothetical protein gene gene1702 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1645 Amico_1646 Amico_1646 Amico_1646 1686932 1687168 + hypothetical protein gene gene1703 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1646 Amico_1647 Amico_1647 Amico_1647 1687152 1689056 + DNA gyrase%2C B subunit SMART: DNA topoisomerase II%3B ATP-binding region ATPase domain protein~TIGRFAM: DNA gyrase%2C B subunit~KEGG: ppd:Ppro_0004 DNA gyrase%2C B subunit~PFAM: DNA topoisomerase type IIA subunit B region 2 domain protein%3B DNA gyrase subunit B domain protein%3B TOPRIM domain protein%3B ATP-binding region ATPase domain protein gene gene1704 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1647 Amico_1648 Amico_1648 Amico_1648 1689134 1690162 - Membrane dipeptidase KEGG: ade:Adeh_3815 membrane dipeptidase~PFAM: peptidase M19 renal dipeptidase gene gene1705 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1648 Amico_1649 Amico_1649 Amico_1649 1690312 1691754 + Leucyl aminopeptidase KEGG: scl:sce2580 hypothetical protein~PFAM: peptidase M17 leucyl aminopeptidase domain protein gene gene1706 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1649 Amico_1650 Amico_1650 Amico_1650 1691747 1692790 - peptidase S58 DmpA PFAM: peptidase S58 DmpA~KEGG: mlo:mlr2477 D-aminopeptidase gene gene1707 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1650 Amico_1651 Amico_1651 Amico_1651 1692903 1693736 + peptidase M55 D-aminopeptidase PFAM: peptidase M55 D-aminopeptidase~KEGG: eca:ECA0133 hypothetical protein gene gene1708 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1651 Amico_1652 Amico_1652 Amico_1652 1693818 1694507 - transcriptional regulator%2C GntR family KEGG: dac:Daci_3752 GntR family transcriptional regulator~PFAM: regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene1709 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1652 Amico_1653 Amico_1653 Amico_1653 1694691 1695686 - Uroporphyrinogen decarboxylase (URO-D) PFAM: Uroporphyrinogen decarboxylase (URO-D)~KEGG: reu:Reut_B5441 uroporphyrinogen decarboxylase gene gene1710 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1653 Amico_1654 Amico_1654 Amico_1654 1695746 1696933 - amidohydrolase TIGRFAM: amidohydrolase~KEGG: GSVIVT00034215001%3B hypothetical protein LOC100251400~PFAM: peptidase M20%3B peptidase dimerisation domain protein gene gene1711 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1654 Amico_1655 Amico_1655 Amico_1655 1697000 1698094 - peptidase M24 PFAM: peptidase M24~KEGG: slo:Shew_0955 peptidase M24 gene gene1712 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1655 Amico_1656 Amico_1656 Amico_1656 1698277 1699806 - extracellular solute-binding protein family 5 PFAM: extracellular solute-binding protein family 5~KEGG: rpf:Rpic12D_3383 extracellular solute-binding protein family 5 gene gene1713 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1656 Amico_1657 Amico_1657 Amico_1657 1699902 1700555 - hypothetical protein gene gene1714 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1657 Amico_1658 Amico_1658 Amico_1658 1700552 1701538 - oligopeptide/dipeptide ABC transporter%2C ATPase subunit TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~KEGG: rme:Rmet_4580 oligopeptide/dipeptide ABC transporter%2C ATP-binding protein-like protein~SMART: AAA ATPase gene gene1715 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1658 Amico_1659 Amico_1659 Amico_1659 1701535 1702536 - oligopeptide/dipeptide ABC transporter%2C ATPase subunit TIGRFAM: oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter related%3B Oligopeptide/dipeptide ABC transporter domain protein~KEGG: bpt:Bpet0285 oligopeptide ABC transporter%2C ATP-binding protein~SMART: AAA ATPase gene gene1716 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1659 Amico_1660 Amico_1660 Amico_1660 1702548 1703420 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: dde:Dde_1183 putative permease of ABC transporter gene gene1717 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1660 Amico_1661 Amico_1661 Amico_1661 1703435 1704358 - binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: mes:Meso_3132 binding-protein-dependent transport systems inner membrane component gene gene1718 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1661 Amico_1662 Amico_1662 Amico_1662 1704877 1706091 - Polynucleotide adenylyltransferase region PFAM: Polynucleotide adenylyltransferase region~KEGG: hdu:HD0604 polyA polymerase gene gene1719 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1662 Amico_1663 Amico_1663 Amico_1663 1706405 1707499 + Malate/L-lactate dehydrogenase PFAM: Malate/L-lactate dehydrogenase~KEGG: sat:SYN_02526 malate/L-lactate dehydrogenase gene gene1720 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1663 Amico_1664 Amico_1664 Amico_1664 1707504 1708781 + Protein of unknown function DUF2088 PFAM: Protein of unknown function DUF2088~KEGG: dat:HRM2_30760 hypothetical protein gene gene1721 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1664 Amico_1665 Amico_1665 Amico_1665 1708814 1709770 + 2-dehydro-3-deoxyphosphogluconate aldolase/4- hydroxy-2-oxoglutarate aldolase KEGG: ppr:PBPRB1883 keto-hydroxyglutarate- aldolase/keto-deoxy-phosphogluconate aldolase~TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase~PFAM: KDPG and KHG aldolase gene gene1722 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1665 Amico_1666 Amico_1666 Amico_1666 1709903 1709998 + hypothetical protein gene gene1723 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1666 Amico_1667 Amico_1667 Amico_1667 1710099 1711112 + ABC transporter related protein KEGG: hsm:HSM_0571 DL-methionine transporter ATP- binding subunit~PFAM: ABC transporter related%3B NIL domain~SMART: AAA ATPase gene gene1724 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1667 Amico_1668 Amico_1668 Amico_1668 1711105 1711767 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: cff:CFF8240_0968 D-methionine transport system permease protein MetI gene gene1725 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1668 Amico_1669 Amico_1669 Amico_1669 1711833 1712633 + NLPA lipoprotein PFAM: NLPA lipoprotein~KEGG: maq:Maqu_0253 NlpA lipoprotein gene gene1726 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1669 Amico_1670 Amico_1670 Amico_1670 1712721 1713872 - Mandelate racemase/muconate lactonizing protein PFAM: Mandelate racemase/muconate lactonizing protein~KEGG: bur:Bcep18194_A5994 galactonate dehydratase gene gene1727 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1670 Amico_1671 Amico_1671 Amico_1671 1713888 1714916 - PfkB domain protein PFAM: PfkB domain protein~KEGG: dda:Dd703_1379 PfkB domain protein gene gene1728 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1671 Amico_1672 Amico_1672 Amico_1672 1714934 1715596 - 2-dehydro-3-deoxyphosphogluconate aldolase/4- hydroxy-2-oxoglutarate aldolase KEGG: mmw:Mmwyl1_0212 2-dehydro-3- deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase~TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase~PFAM: KDPG and KHG aldolase gene gene1729 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1672 Amico_1673 Amico_1673 Amico_1673 1715596 1716384 - transcriptional regulator%2C IclR family KEGG: aav:Aave_0116 IclR family transcriptional regulator~PFAM: Transcriptional regulator IclR %3B regulatory protein IclR~SMART: regulatory protein IclR gene gene1730 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1673 Amico_1674 Amico_1674 Amico_1674 1716411 1717685 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: plu:plu0174 hypothetical protein~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1731 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1674 Amico_1675 Amico_1675 Amico_1675 1717687 1718172 - Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: pol:Bpro_5096 tripartite ATP-independent periplasmic transporter DctQ gene gene1732 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1675 Amico_1676 Amico_1676 Amico_1676 1718282 1719283 - TRAP dicarboxylate transporter%2C DctP subunit KEGG: hsm:HSM_1915 TRAP dicarboxylate transporter%2C DctP subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene1733 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1676 Amico_1677 Amico_1677 Amico_1677 1719400 1720884 - Altronate dehydratase KEGG: eic:NT01EI_0504 altronate hydrolase~PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein%3B SAF domain protein gene gene1734 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1677 Amico_1678 Amico_1678 Amico_1678 1721146 1721955 + phosphate binding protein KEGG: dal:Dalk_1427 phosphate binding protein~TIGRFAM: phosphate binding protein~PFAM: extracellular solute-binding protein family 1 gene gene1735 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1678 Amico_1679 Amico_1679 Amico_1679 1722089 1722958 + phosphate ABC transporter%2C inner membrane subunit PstC KEGG: dde:Dde_1061 phosphate ABC transporter permease~TIGRFAM: phosphate ABC transporter%2C inner membrane subunit PstC~PFAM: binding-protein-dependent transport systems inner membrane component gene gene1736 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1679 Amico_1680 Amico_1680 Amico_1680 1722955 1723806 + phosphate ABC transporter%2C inner membrane subunit PstA KEGG: sat:SYN_00058 ABC-type phosphate transport system%2C permease component~TIGRFAM: phosphate ABC transporter%2C inner membrane subunit PstA~PFAM: binding-protein-dependent transport systems inner membrane component gene gene1737 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1680 Amico_1681 Amico_1681 Amico_1681 1723831 1724589 + phosphate ABC transporter%2C ATPase subunit TIGRFAM: phosphate ABC transporter%2C ATPase subunit~PFAM: ABC transporter related~KEGG: dde:Dde_2386 phosphate ABC transporter permease~SMART: AAA ATPase gene gene1738 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1681 Amico_1682 Amico_1682 Amico_1682 1724627 1725316 + phosphate uptake regulator%2C PhoU KEGG: sat:SYN_00060 phosphate transport system protein~TIGRFAM: phosphate transport system regulatory protein PhoU~PFAM: PhoU family protein gene gene1739 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1682 Amico_1683 Amico_1683 Amico_1683 1725318 1726016 + two component transcriptional regulator%2C winged helix family KEGG: gsu:GSU1102 DNA-binding response regulator~PFAM: response regulator receiver%3B transcriptional regulator domain protein~SMART: response regulator receiver gene gene1740 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1683 Amico_1684 Amico_1684 Amico_1684 1726013 1727776 + multi-sensor signal transduction histidine kinase KEGG: dal:Dalk_1426 PAS/PAC sensor signal transduction histidine kinase~PFAM: ATP-binding region ATPase domain protein%3B histidine kinase HAMP region domain protein%3B histidine kinase A domain protein~SMART: ATP-binding region ATPase domain protein%3B histidine kinase A domain protein%3B PAS domain containing protein gene gene1741 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1684 Amico_1685 Amico_1685 Amico_1685 1727857 1728387 - hypothetical protein gene gene1742 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1685 Amico_1686 Amico_1686 Amico_1686 1728607 1729320 - aspartate racemase KEGG: pol:Bpro_4384 aspartate racemase~TIGRFAM: aspartate racemase~PFAM: Asp/Glu/hydantoin racemase gene gene1743 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1686 Amico_1687 Amico_1687 Amico_1687 1729554 1730690 - metallophosphoesterase PFAM: metallophosphoesterase~KEGG: geo:Geob_2083 metallophosphoesterase gene gene1744 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1687 Amico_1688 Amico_1688 Amico_1688 1730905 1731699 + transcriptional regulator%2C IclR family KEGG: dda:Dd703_2055 transcriptional regulator%2C IclR family~PFAM: Transcriptional regulator IclR %3B regulatory protein IclR%3B Helix-turn-helix type 11 domain protein~SMART: regulatory protein IclR gene gene1745 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1688 Amico_1689 Amico_1689 Amico_1689 1731718 1732290 + Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: dps:DP0485 DctQ (C4-dicarboxylate permease%2C small subunit) gene gene1746 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1689 Amico_1690 Amico_1690 Amico_1690 1732290 1733591 + TRAP dicarboxylate transporter%2C DctM subunit KEGG: dps:DP0487 DctM (C4-dicarboxylate permease%2C large subunit)~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1747 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1690 Amico_1691 Amico_1691 Amico_1691 1733700 1734737 + Extracellular solute-binding protein%2C family 7 PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~KEGG: dps:DP0493 DctP (periplasmic C4-dicarboxylate binding protein) gene gene1748 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1691 Amico_1692 Amico_1692 Amico_1692 1734820 1736175 + aminotransferase class-III PFAM: aminotransferase class-III~KEGG: sfu:Sfum_2649 aminotransferase class-III gene gene1749 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1692 Amico_1693 Amico_1693 Amico_1693 1736183 1736500 + hypothetical protein gene gene1750 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1693 Amico_1694 Amico_1694 Amico_1694 1736497 1737897 + Pyridoxal-5'-phosphate-dependent protein beta subunit PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit~KEGG: similar to Cystathionine-beta-synthase %3B K01697 cystathionine beta-synthase gene gene1751 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1694 Amico_1695 Amico_1695 Amico_1695 1738037 1738681 - protein of unknown function DUF161 PFAM: protein of unknown function DUF161~KEGG: ent:Ent638_0926 hypothetical protein gene gene1752 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1695 Amico_1696 Amico_1696 Amico_1696 1738847 1740451 - Gamma-glutamyltransferase KEGG: pfs:PFLU4096 putative gamma- glutamyltranspeptidase~PFAM: gamma-glutamyltranspeptidase gene gene1753 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1696 Amico_1697 Amico_1697 Amico_1697 1740545 1741699 - YibE/F family protein PFAM: YibE/F family protein~KEGG: dat:HRM2_01870 uncharacterized conserved multi-transmembrane protein gene gene1754 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1697 Amico_1698 Amico_1698 Amico_1698 1741778 1743253 - Alkaline phosphatase KEGG: dma:DMR_08520 alkaline phosphatase precursor~PFAM: Alkaline phosphatase~SMART: Alkaline phosphatase gene gene1755 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1698 Amico_1699 Amico_1699 Amico_1699 1743478 1744860 - hypothetical protein gene gene1756 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1699 Amico_1700 Amico_1700 Amico_1700 1745046 1745939 - 2%2C3-dimethylmalate lyase KEGG: bxe:Bxe_C0659 2%2C3-dimethylmalate lyase gene gene1757 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1700 Amico_1701 Amico_1701 Amico_1701 1745914 1747848 - TRAP transporter%2C 4TM/12TM fusion protein KEGG: dat:HRM2_29050 TRAP transporter%2C 4TM/12TM fusion protein~TIGRFAM: TRAP transporter%2C 4TM/12TM fusion protein~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1758 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1701 Amico_1702 Amico_1702 Amico_1702 1747943 1748962 - TRAP transporter solute receptor%2C TAXI family TIGRFAM: TRAP transporter solute receptor%2C TAXI family~KEGG: sfu:Sfum_3723 TRAP transporter solute receptor TAXI family protein gene gene1759 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1702 Amico_1703 Amico_1703 Amico_1703 1749140 1749643 - 3-isopropylmalate dehydratase%2C small subunit KEGG: wsu:WS1812 3-isopropylmalate dehydratase small subunit~TIGRFAM: 3-isopropylmalate dehydratase%2C small subunit~PFAM: aconitate hydratase domain protein gene gene1760 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1703 Amico_1704 Amico_1704 Amico_1704 1749640 1750917 - 3-isopropylmalate dehydratase TIGRFAM: 3-isopropylmalate dehydratase%3B homoaconitate hydratase family protein~KEGG: sat:SYN_00091 3-isopropylmalate dehydratase large subunit~PFAM: aconitate hydratase domain protein gene gene1761 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1704 Amico_1705 Amico_1705 Amico_1705 1750920 1752305 - MmgE/PrpD family protein PFAM: MmgE/PrpD family protein~KEGG: hypothetical protein gene gene1762 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1705 Amico_1706 Amico_1706 Amico_1706 1752370 1753740 - MmgE/PrpD family protein PFAM: MmgE/PrpD family protein~KEGG: sfu:Sfum_0172 MmgE/PrpD family protein gene gene1763 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1706 Amico_1707 Amico_1707 Amico_1707 1753733 1754059 - conserved hypothetical protein KEGG: vei:Veis_3992 hypothetical protein gene gene1764 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1707 Amico_1708 Amico_1708 Amico_1708 1754056 1755456 - MmgE/PrpD family protein PFAM: MmgE/PrpD family protein~KEGG: bbr:BB3562 hypothetical protein gene gene1765 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1708 Amico_1709 Amico_1709 Amico_1709 1755459 1756844 - conserved hypothetical protein KEGG: vei:Veis_3993 hypothetical protein gene gene1766 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1709 Amico_1710 Amico_1710 Amico_1710 1757102 1758094 + Ribonuclease R winged-helix domain protein PFAM: Ribonuclease R winged-helix domain protein~KEGG: sat:SYN_03243 putative cytoplasmic protein gene gene1767 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1710 Amico_1711 Amico_1711 Amico_1711 1758220 1759503 - hypothetical protein gene gene1768 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1711 Amico_1712 Amico_1712 Amico_1712 1759520 1760776 - lipopolysaccharide biosynthesis protein PFAM: lipopolysaccharide biosynthesis protein~KEGG: cvi:CV_0772 hypothetical protein gene gene1769 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1712 Amico_1713 Amico_1713 Amico_1713 1760793 1763054 - polysaccharide export protein PFAM: polysaccharide export protein%3B Soluble ligand binding domain~KEGG: lch:Lcho_0648 polysaccharide export protein gene gene1770 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1713 Amico_1714 Amico_1714 Amico_1714 1763489 1763809 + pseudogene gene1771 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1714 Amico_1715 Amico_1715 Amico_1715 1763819 1765678 + polysaccharide biosynthesis protein CapD PFAM: polysaccharide biosynthesis protein CapD%3B 3- beta hydroxysteroid dehydrogenase/isomerase%3B short-chain dehydrogenase/reductase SDR%3B dTDP-4-dehydrorhamnose reductase%3B NAD-dependent epimerase/dehydratase~KEGG: gme:Gmet_1338 polysaccharide biosynthesis protein CapD gene gene1772 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1715 Amico_1716 Amico_1716 Amico_1716 1765665 1766795 + DegT/DnrJ/EryC1/StrS aminotransferase PFAM: DegT/DnrJ/EryC1/StrS aminotransferase~KEGG: ftn:FTN_1430 aminotransferase gene gene1773 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1716 Amico_1717 Amico_1717 Amico_1717 1766795 1767460 + Undecaprenyl-phosphate galactose phosphotransferase KEGG: ftn:FTN_1429 galactosyl transferase~PFAM: sugar transferase gene gene1774 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1717 Amico_1718 Amico_1718 Amico_1718 1767453 1768064 + sugar O-acyltransferase%2C sialic acid O- acetyltransferase NeuD family TIGRFAM: sugar O-acyltransferase%2C sialic acid O- acetyltransferase NeuD family~KEGG: gur:Gura_1700 serine acetyltransferase-like protein gene gene1775 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1718 Amico_1719 Amico_1719 Amico_1719 1768071 1769318 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: reh:H16_B0025 glycosyl transferase gene gene1776 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1719 Amico_1720 Amico_1720 Amico_1720 1769357 1770448 + UDP-N-acetylglucosamine 2-epimerase TIGRFAM: UDP-N-acetylglucosamine 2-epimerase~KEGG: abu:Abu_0692 putative hexose epimerase~PFAM: UDP-N-acetylglucosamine 2-epimerase gene gene1777 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1720 Amico_1721 Amico_1721 Amico_1721 1770464 1771579 + glycosyl transferase group 1 PFAM: glycosyl transferase group 1~KEGG: pae:PA3149 glycosyltransferase WbpH gene gene1778 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1721 Amico_1722 Amico_1722 Amico_1722 1771609 1772490 + UDP-3-O-(3-hydroxymyristoyl)-like protein KEGG: saz:Sama_2251 UDP-3-O-(3-hydroxymyristoyl)- like protein gene gene1779 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1722 Amico_1723 Amico_1723 Amico_1723 1772516 1773529 + Beta-ketoacyl-acyl-carrier-protein synthase III KEGG: vha:VIBHAR_00675 3-oxoacyl-(acyl-carrier protein) synthase~PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein%3B 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III gene gene1780 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1723 Amico_1724 Amico_1724 Amico_1724 1773536 1773757 + acyl carrier protein%2C putative KEGG: cla:Cla_1306 acyl carrier protein%2C putative gene gene1781 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1724 Amico_1725 Amico_1725 Amico_1725 1773750 1774523 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR%3B KR domain protein~KEGG: psp:PSPPH_3425 gluconate 5-dehydrogenase%2C putative gene gene1782 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1725 Amico_1726 Amico_1726 Amico_1726 1774543 1775865 + nucleotide sugar dehydrogenase TIGRFAM: nucleotide sugar dehydrogenase~KEGG: mxa:MXAN_2689 lipopolysaccharide biosynthesis protein~PFAM: UDP-glucose/GDP-mannose dehydrogenase%3B UDP- glucose/GDP-mannose dehydrogenase dimerisation%3B UDP- glucose/GDP-mannose dehydrogenase %3B 6-phosphogluconate dehydrogenase NAD-binding gene gene1783 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1726 Amico_1727 Amico_1727 Amico_1727 1775882 1776877 + oxidoreductase domain protein PFAM: oxidoreductase domain protein%3B Oxidoreductase domain~KEGG: bbr:BB0155 oxidoreductase gene gene1784 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1727 Amico_1728 Amico_1728 Amico_1728 1776926 1778398 + hypothetical protein KEGG: sfu:Sfum_0783 hypothetical protein gene gene1785 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1728 Amico_1729 Amico_1729 Amico_1729 1778478 1778684 - pseudogene gene1786 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1729 Amico_1730 Amico_1730 Amico_1730 1778877 1780289 - polysaccharide biosynthesis protein PFAM: polysaccharide biosynthesis protein~KEGG: prw:PsycPRwf_0243 polysaccharide biosynthesis protein gene gene1787 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1730 Amico_1731 Amico_1731 Amico_1731 1780296 1781387 - dTDP-glucose 4%2C6-dehydratase KEGG: pne:Pnec_0277 dTDP-glucose 4%2C6-dehydratase~TIGRFAM: dTDP-glucose 4%2C6-dehydratase~PFAM: NAD-dependent epimerase/dehydratase%3B Male sterility domain%3B 3-beta hydroxysteroid dehydrogenase/isomerase%3B dTDP-4-dehydrorhamnose reductase gene gene1788 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1731 Amico_1732 Amico_1732 Amico_1732 1781399 1781971 - TDP-4-oxo-6-deoxy-D-glucose transaminase KEGG: sun:SUN_1549 TDP-4-oxo-6-deoxy-D-glucose transaminase gene gene1789 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1732 Amico_1733 Amico_1733 Amico_1733 1782002 1783078 - DegT/DnrJ/EryC1/StrS aminotransferase PFAM: DegT/DnrJ/EryC1/StrS aminotransferase%3B aromatic amino acid beta-eliminating lyase/threonine aldolase~KEGG: psa:PST_1762 aminotransferase gene gene1790 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1733 Amico_1734 Amico_1734 Amico_1734 1783075 1783950 - glucose-1-phosphate thymidylyltransferase KEGG: son:SO_3186 glucose-1-phosphate- thymidylyltransferase~TIGRFAM: glucose-1-phosphate thymidylyltransferase~PFAM: Nucleotidyl transferase gene gene1791 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1734 Amico_1735 Amico_1735 Amico_1735 1783989 1785074 - 4-alpha-L-fucosyltransferase KEGG: sun:SUN_1550 4-alpha-L-fucosyltransferase gene gene1792 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1735 Amico_1736 Amico_1736 Amico_1736 1785078 1785629 - putative transcriptional regulator%2C PaaX family KEGG: dol:Dole_0533 hypothetical protein gene gene1793 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1736 Amico_1737 Amico_1737 Amico_1737 1785746 1786681 - protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane%3B UAA transporter~KEGG: cco:CCC13826_1128 phosphate acetyltransferase (phosphotransacetylase) gene gene1794 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1737 Amico_1738 Amico_1738 Amico_1738 1786807 1787316 - RNA polymerase%2C sigma-24 subunit%2C ECF subfamily TIGRFAM: RNA polymerase sigma factor%2C sigma-70 family~PFAM: sigma-70 region 2 domain protein~KEGG: cja:CJA_1175 RNA polymerase sigma-24 factor gene gene1795 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1738 Amico_1739 Amico_1739 Amico_1739 1787313 1787681 - Peptidase M15A PFAM: Peptidase M15A~KEGG: dds:Ddes_0248 peptidase M15A gene gene1796 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1739 Amico_1740 Amico_1740 Amico_1740 1787638 1787835 - hypothetical protein gene gene1797 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1740 Amico_1741 Amico_1741 Amico_1741 1787907 1788113 - hypothetical protein gene gene1798 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1741 Amico_1742 Amico_1742 Amico_1742 1788200 1788415 - hypothetical protein gene gene1799 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1742 Amico_1743 Amico_1743 Amico_1743 1788603 1789049 - conserved hypothetical protein KEGG: dde:Dde_3032 hypothetical protein gene gene1800 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1743 Amico_1744 Amico_1744 Amico_1744 1789053 1789868 - conserved hypothetical protein KEGG: dde:Dde_3031 hypothetical protein gene gene1801 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1744 Amico_1745 Amico_1745 Amico_1745 1789884 1791194 - amidohydrolase KEGG: hypothetical protein~TIGRFAM: amidohydrolase~PFAM: peptidase M20 gene gene1802 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1745 Amico_1746 Amico_1746 Amico_1746 1791516 1791716 - pseudogene gene1803 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1746 Amico_1747 Amico_1747 Amico_1747 1791709 1792461 - protein of unknown function DUF955 PFAM: protein of unknown function DUF955~KEGG: dal:Dalk_3082 protein of unknown function DUF955 gene gene1804 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1747 Amico_1748 Amico_1748 Amico_1748 1792458 1792802 - transcriptional regulator%2C XRE family KEGG: pla:Plav_0594 hypothetical protein~PFAM: helix-turn-helix domain protein~SMART: helix-turn-helix domain protein gene gene1805 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1748 Amico_1749 Amico_1749 Amico_1749 1792999 1794282 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: dps:DP3053 DctMQ fusion protein (C4- dicarboxylate transporter)~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit%3B Citrate transporter gene gene1806 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1749 Amico_1750 Amico_1750 Amico_1750 1794298 1794777 - Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: tmz:Tmz1t_0544 tripartite ATP-independent periplasmic transporter DctQ component gene gene1807 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1750 Amico_1751 Amico_1751 Amico_1751 1794801 1795796 - TRAP dicarboxylate transporter%2C DctP subunit KEGG: csa:Csal_1747 TRAP dicarboxylate transporter%2C DctP subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene1808 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1751 Amico_1752 Amico_1752 Amico_1752 1795840 1797015 - aminotransferase class I and II PFAM: aminotransferase class I and II%3B DegT/DnrJ/EryC1/StrS aminotransferase%3B aminotransferase class V%3B Cys/Met metabolism pyridoxal-phosphate-dependent protein~KEGG: pla:Plav_2300 aspartate aminotransferase gene gene1809 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1752 Amico_1753 Amico_1753 Amico_1753 1797032 1797994 - D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding protein PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding%3B D-isomer specific 2-hydroxyacid dehydrogenase catalytic region~KEGG: similar to C-terminal binding protein 1 %3B K04496 C-terminal binding protein gene gene1810 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1753 Amico_1754 Amico_1754 Amico_1754 1798012 1799646 - Amidohydrolase 3 PFAM: Amidohydrolase 3%3B amidohydrolase~KEGG: ilo:IL1207 metal-dependent amidohydrolase with the TIM-barrel fold gene gene1811 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1754 Amico_1755 Amico_1755 Amico_1755 1799894 1801042 - ATP-NAD/AcoX kinase PFAM: ATP-NAD/AcoX kinase~KEGG: swp:swp_3128 ATP-NAD/AcoX kinase gene gene1812 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1755 Amico_1756 Amico_1756 Amico_1756 1801049 1802632 - glycine dehydrogenase subunit 2 KEGG: vei:Veis_2458 glycine dehydrogenase subunit 2 gene gene1813 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1756 Amico_1757 Amico_1757 Amico_1757 1802658 1804049 - Glycine dehydrogenase (decarboxylating) KEGG: vei:Veis_2459 glycine dehydrogenase subunit 1~PFAM: Glycine cleavage system P-protein-like gene gene1814 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1757 Amico_1758 Amico_1758 Amico_1758 1804161 1805771 - Amidohydrolase 3 PFAM: Amidohydrolase 3~KEGG: ilo:IL1207 metal-dependent amidohydrolase with the TIM-barrel fold gene gene1815 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1758 Amico_1759 Amico_1759 Amico_1759 1805814 1807124 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: rpb:RPB_1293 TRAP dicarboxylate transporter DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1816 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1759 Amico_1760 Amico_1760 Amico_1760 1807140 1807604 - Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: dat:HRM2_38730 DctQ7 gene gene1817 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1760 Amico_1761 Amico_1761 Amico_1761 1807707 1808783 - Extracellular solute-binding protein%2C family 7 PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria~KEGG: dat:HRM2_38370 DctP6 gene gene1818 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1761 Amico_1762 Amico_1762 Amico_1762 1808799 1809116 - conserved hypothetical protein KEGG: abu:Abu_1007 hypothetical protein gene gene1819 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1762 Amico_1763 Amico_1763 Amico_1763 1809818 1810480 + transcriptional regulator%2C GntR family KEGG: bpt:Bpet2784 GntR family transcriptional regulator~PFAM: GntR domain protein%3B regulatory protein GntR HTH~SMART: regulatory protein GntR HTH gene gene1820 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1763 Amico_1764 Amico_1764 Amico_1764 1810690 1811757 + protein of unknown function UPF0118 PFAM: protein of unknown function UPF0118~KEGG: spq:SPAB_01833 putative transport protein gene gene1821 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1764 Amico_1765 Amico_1765 Amico_1765 1811924 1813138 - aromatic amino acid beta-eliminating lyase/threonine aldolase PFAM: aromatic amino acid beta-eliminating lyase/threonine aldolase~KEGG: avi:Avi_5094 L-seryl-tRNA(ser) selenium transferase gene gene1822 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1765 Amico_1766 Amico_1766 Amico_1766 1813171 1814232 - 1-aminocyclopropane-1-carboxylate deaminase KEGG: par:Psyc_1604 D-cysteine desulfhydrase gene gene1823 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1766 Amico_1767 Amico_1767 Amico_1767 1814290 1815660 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B pyridine nucleotide-disulphide oxidoreductase dimerisation region~KEGG: afw:Anae109_0766 FAD-dependent pyridine nucleotide-disulphide oxidoreductase gene gene1824 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1767 Amico_1768 Amico_1768 Amico_1768 1815706 1816623 - dihydrodipicolinate synthetase PFAM: dihydrodipicolinate synthetase~KEGG: dda:Dd703_1815 dihydrodipicolinate synthetase gene gene1825 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1768 Amico_1769 Amico_1769 Amico_1769 1816680 1817147 - Endoribonuclease L-PSP PFAM: Endoribonuclease L-PSP~KEGG: vap:Vapar_6055 endoribonuclease L-PSP gene gene1826 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1769 Amico_1770 Amico_1770 Amico_1770 1817193 1819142 - TRAP transporter%2C 4TM/12TM fusion protein KEGG: sfu:Sfum_3721 TRAP transporter%2C 4TM/12TM fusion protein~TIGRFAM: TRAP transporter%2C 4TM/12TM fusion protein~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1827 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1770 Amico_1771 Amico_1771 Amico_1771 1819221 1820216 - TRAP transporter solute receptor%2C TAXI family TIGRFAM: TRAP transporter solute receptor%2C TAXI family~KEGG: sfu:Sfum_3723 TRAP transporter solute receptor TAXI family protein gene gene1828 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1771 Amico_1772 Amico_1772 Amico_1772 1820273 1821013 - GntR domain protein PFAM: GntR domain protein%3B Ribonuclease R winged- helix domain protein~KEGG: pfo:Pfl01_3719 GntR family transcriptional regulator gene gene1829 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1772 Amico_1773 Amico_1773 Amico_1773 1821228 1822031 + Methyltransferase type 11 PFAM: Methyltransferase type 11%3B UbiE/COQ5 methyltransferase%3B Methyltransferase type 12~KEGG: tgr:Tgr7_0251 arsenite S- adenosylmethyltransferase gene gene1830 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1773 Amico_1774 Amico_1774 Amico_1774 1822147 1822347 - cold-shock DNA-binding domain protein KEGG: gsu:GSU0581 cold-shock domain-contain protein~PFAM: Cold-shock protein DNA-binding~SMART: Cold shock protein gene gene1831 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1774 Amico_1775 Amico_1775 Amico_1775 1822636 1823490 + protein of unknown function DUF1568 PFAM: protein of unknown function DUF1568~KEGG: tbd:Tbd_1966 hypothetical protein gene gene1832 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1775 Amico_1776 Amico_1776 Amico_1776 1823738 1824196 - large conductance mechanosensitive channel protein KEGG: cvi:CV_1360 large-conductance mechanosensitive channel~TIGRFAM: large conductance mechanosensitive channel protein~PFAM: large-conductance mechanosensitive channel gene gene1833 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1776 Amico_1777 Amico_1777 Amico_1777 1824578 1826236 + extracellular solute-binding protein family 5 PFAM: extracellular solute-binding protein family 5~KEGG: pol:Bpro_4406 twin-arginine translocation pathway signal gene gene1834 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1777 Amico_1778 Amico_1778 Amico_1778 1826242 1827216 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: pol:Bpro_4405 binding-protein-dependent transport systems inner membrane component gene gene1835 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1778 Amico_1779 Amico_1779 Amico_1779 1827216 1828400 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: dal:Dalk_0870 binding-protein-dependent transport systems inner membrane component gene gene1836 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1779 Amico_1780 Amico_1780 Amico_1780 1828397 1829179 + ABC transporter related protein KEGG: pcr:Pcryo_0756 oligopeptide/dipeptide ABC transporter%2C ATP-binding protein-like~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1837 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1780 Amico_1781 Amico_1781 Amico_1781 1829176 1830003 + ABC transporter related protein KEGG: aeh:Mlg_2176 oligopeptide/dipeptide ABC transporter%2C ATPase subunit~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1838 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1781 Amico_1782 Amico_1782 Amico_1782 1829948 1831171 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1%3B General substrate transporter~KEGG: glo:Glov_2412 major facilitator superfamily MFS_1 gene gene1839 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1782 Amico_1783 Amico_1783 Amico_1783 1831204 1831800 - ribonuclease H PFAM: ribonuclease H%3B zinc finger SWIM domain protein~KEGG: afw:Anae109_0764 ribonuclease H gene gene1840 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1783 Amico_1784 Amico_1784 Amico_1784 1831793 1832668 - dTDP-4-dehydrorhamnose reductase TIGRFAM: dTDP-4-dehydrorhamnose reductase~KEGG: dal:Dalk_2507 dTDP-4-dehydrorhamnose reductase~PFAM: dTDP-4-dehydrorhamnose reductase%3B Male sterility domain%3B 3-beta hydroxysteroid dehydrogenase/isomerase%3B polysaccharide biosynthesis protein CapD%3B NAD-dependent epimerase/dehydratase gene gene1841 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1784 Amico_1785 Amico_1785 Amico_1785 1833030 1834286 - Glycine hydroxymethyltransferase KEGG: gbm:Gbem_3102 glycine hydroxymethyltransferase~PFAM: glycine hydroxymethyltransferase%3B Orn/Lys/Arg decarboxylase major region%3B aromatic amino acid beta- eliminating lyase/threonine aldolase gene gene1842 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1785 Amico_1786 Amico_1786 Amico_1786 1834328 1835521 - pyridoxal phosphate-dependent acyltransferase TIGRFAM: pyridoxal phosphate-dependent acyltransferase~KEGG: gem:GM21_0048 pyridoxal phosphate-dependent acyltransferase~PFAM: aminotransferase class I and II%3B aminotransferase class-III gene gene1843 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1786 Amico_1787 Amico_1787 Amico_1787 1835553 1836524 - NAD-dependent epimerase/dehydratase PFAM: NAD-dependent epimerase/dehydratase%3B Male sterility domain~KEGG: sat:SYN_00564 L-threonine 3-dehydrogenase gene gene1844 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1787 Amico_1788 Amico_1788 Amico_1788 1836547 1836831 - hypothetical protein KEGG: GI19499 gene product from transcript GI19499- RA gene gene1845 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1788 Amico_1789 Amico_1789 Amico_1789 1836981 1837571 - hypothetical protein gene gene1846 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1789 Amico_1790 Amico_1790 Amico_1790 1837739 1838923 + Malate dehydrogenase (oxaloacetate- decarboxylating) KEGG: malic enzyme~PFAM: malic protein NAD-binding%3B malic protein domain protein gene gene1847 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1790 Amico_1791 Amico_1791 Amico_1791 1839001 1840512 - AMP-dependent synthetase and ligase PFAM: AMP-dependent synthetase and ligase~KEGG: dds:Ddes_1253 AMP-dependent synthetase and ligase gene gene1848 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1791 Amico_1792 Amico_1792 Amico_1792 1840632 1841480 + Queuosine synthesis-like protein PFAM: Queuosine synthesis-like~KEGG: dal:Dalk_2473 ExsB family protein gene gene1849 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1792 Amico_1793 Amico_1793 Amico_1793 1841477 1842730 + protein of unknown function DUF111 PFAM: protein of unknown function DUF111~KEGG: sat:SYN_00476 hypothetical protein gene gene1850 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1793 Amico_1794 Amico_1794 Amico_1794 1842830 1843963 - alanine racemase domain protein PFAM: alanine racemase domain protein~KEGG: cco:CCC13826_0405 putative GlnD family protein gene gene1851 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1794 Amico_1795 Amico_1795 Amico_1795 1844049 1845248 - amidohydrolase TIGRFAM: amidohydrolase~KEGG: nis:NIS_1768 N-acetyl-L-amino acid amidohydrolase~PFAM: peptidase M20%3B peptidase dimerisation domain protein gene gene1852 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1795 Amico_1796 Amico_1796 Amico_1796 1845267 1846448 - hypothetical protein KEGG: cps:CPS_2697 sodium/glutamate symporter gene gene1853 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1796 Amico_1797 Amico_1797 Amico_1797 1846783 1847007 + hypothetical protein KEGG: sat:SYN_01296 putative cytoplasmic protein gene gene1854 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1797 Amico_1798 Amico_1798 Amico_1798 1847161 1847571 + hypothetical protein gene gene1855 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1798 Amico_1799 Amico_1799 Amico_1799 1847662 1849008 - FAD-dependent pyridine nucleotide-disulfide oxidoreductase PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase%3B pyridine nucleotide-disulphide oxidoreductase dimerisation region~KEGG: gme:Gmet_1148 FAD-dependent pyridine nucleotide-disulphide oxidoreductase gene gene1856 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1799 Amico_1800 Amico_1800 Amico_1800 1849067 1850458 - dipeptidase KEGG: ppr:PBPRA2746 hypothetical protein~TIGRFAM: dipeptidase~PFAM: peptidase M20 gene gene1857 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1800 Amico_1801 Amico_1801 Amico_1801 1850582 1852471 - chaperone protein DnaK KEGG: sfu:Sfum_0260 chaperone protein DnaK~TIGRFAM: chaperone protein DnaK~PFAM: Heat shock protein 70 gene gene1858 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1801 Amico_1802 Amico_1802 Amico_1802 1852709 1853539 + hypothetical protein gene gene1859 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1802 Amico_1803 Amico_1803 Amico_1803 1853583 1854683 - NAD/NADP octopine/nopaline dehydrogenase PFAM: NAD/NADP octopine/nopaline dehydrogenase%3B NAD- dependent glycerol-3-phosphate dehydrogenase domain protein%3B Ketopantoate reductase ApbA/PanE domain protein~KEGG: glo:Glov_2392 NAD/NADP octopine/nopaline dehydrogenase gene gene1860 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1803 Amico_1804 Amico_1804 Amico_1804 1854676 1856550 - TRAP transporter%2C 4TM/12TM fusion protein KEGG: sfu:Sfum_3721 TRAP transporter%2C 4TM/12TM fusion protein~TIGRFAM: TRAP transporter%2C 4TM/12TM fusion protein~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1861 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1804 Amico_1805 Amico_1805 Amico_1805 1856597 1857142 - Domain of unknown function DUF1850 PFAM: Domain of unknown function DUF1850 gene gene1862 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1805 Amico_1806 Amico_1806 Amico_1806 1857211 1858188 - TRAP transporter solute receptor%2C TAXI family TIGRFAM: TRAP transporter solute receptor%2C TAXI family~KEGG: sfu:Sfum_3723 TRAP transporter solute receptor TAXI family protein gene gene1863 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1806 Amico_1807 Amico_1807 Amico_1807 1858464 1859360 + transcriptional regulator%2C RpiR family PFAM: sugar isomerase (SIS)%3B helix-turn-helix protein RpiR~KEGG: pen:PSEEN3285 RipR family transcriptional regulator gene gene1864 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1807 Amico_1808 Amico_1808 Amico_1808 1859412 1862528 - conserved hypothetical protein KEGG: dal:Dalk_3815 conserved hypothetical protein- like protein gene gene1865 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1808 Amico_1809 Amico_1809 Amico_1809 1862516 1863826 - metallophosphoesterase PFAM: metallophosphoesterase~KEGG: mxa:MXAN_0149 Ser/Thr protein phosphatase family protein gene gene1866 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1809 Amico_1810 Amico_1810 Amico_1810 1863862 1865103 + Citrate transporter PFAM: Citrate transporter~KEGG: cvi:CV_0365 membrane anion transport protein gene gene1867 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1810 Amico_1811 Amico_1811 Amico_1811 1865097 1866137 + Protein of unknown function DUF2284%2C metal- binding protein PFAM: Protein of unknown function DUF2284%2C metal- binding~KEGG: lhk:LHK_00107 MetH gene gene1868 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1811 Amico_1812 Amico_1812 Amico_1812 1866012 1867196 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: pca:Pcar_2468 putative transport protein gene gene1869 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1812 Amico_1813 Amico_1813 Amico_1813 1867319 1867834 + 3H domain protein PFAM: 3H domain protein%3B Helix-turn-helix type 11 domain protein~KEGG: pfo:Pfl01_5727 DeoR family transcriptional regulator gene gene1870 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1813 Amico_1814 Amico_1814 Amico_1814 1867891 1868901 + PfoR protein KEGG: msu:MS1478 PfoR protein gene gene1871 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1814 Amico_1815 Amico_1815 Amico_1815 1869076 1870713 + diguanylate cyclase TIGRFAM: diguanylate cyclase~PFAM: GGDEF domain containing protein~KEGG: glo:Glov_3440 diguanylate cyclase~SMART: GGDEF domain containing protein gene gene1872 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1815 Amico_1816 Amico_1816 Amico_1816 1870776 1872134 + MATE efflux family protein KEGG: dal:Dalk_2553 MATE efflux family protein~TIGRFAM: MATE efflux family protein~PFAM: multi antimicrobial extrusion protein MatE gene gene1873 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1816 Amico_1817 Amico_1817 Amico_1817 1872131 1872583 + transcriptional regulator%2C MarR family KEGG: dal:Dalk_1623 transcriptional regulator%2C MarR family~PFAM: regulatory protein MarR~SMART: regulatory protein MarR gene gene1874 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1817 Amico_1818 Amico_1818 Amico_1818 1872627 1874177 + periplasmic glucan biosynthesis protein MdoG PFAM: periplasmic glucan biosynthesis protein MdoG~KEGG: mca:MCA3095 glucan biosynthesis protein G gene gene1875 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1818 Amico_1819 Amico_1819 Amico_1819 1874200 1874538 + hypothetical protein gene gene1876 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1819 Amico_1820 Amico_1820 Amico_1820 1874558 1876654 + glucosyltransferase MdoH KEGG: csa:Csal_1286 glucosyltransferase MdoH gene gene1877 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1820 Amico_1821 Amico_1821 Amico_1821 1876689 1877486 + NUDIX hydrolase PFAM: NUDIX hydrolase%3B Zinc ribbon NADH pyrophosphatase%3B NADH pyrophosphatase-like~KEGG: dat:HRM2_47710 NudC gene gene1878 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1821 Amico_1822 Amico_1822 Amico_1822 1877450 1878649 - metal dependent phosphohydrolase TIGRFAM: metal dependent phophohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain~KEGG: hha:Hhal_1865 metal dependent phosphohydrolase~SMART: metal-dependent phosphohydrolase HD region gene gene1879 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1822 Amico_1823 Amico_1823 Amico_1823 1878845 1879360 + Redoxin domain protein PFAM: Redoxin domain protein%3B alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen~KEGG: sfu:Sfum_2340 redoxin domain-containing protein gene gene1880 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1823 Amico_1824 Amico_1824 Amico_1824 1879437 1879736 - nucleic acid binding OB-fold tRNA/helicase-type PFAM: nucleic acid binding OB-fold tRNA/helicase- type gene gene1881 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1824 Amico_1825 Amico_1825 Amico_1825 1879852 1880145 - hypothetical protein gene gene1882 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1825 Amico_1826 Amico_1826 Amico_1826 1880327 1880758 - peptidylprolyl isomerase FKBP-type PFAM: peptidylprolyl isomerase FKBP-type~KEGG: dps:DP3115 peptidyl-prolyl cis-trans isomerase (FKBP-type) gene gene1883 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1826 Amico_1827 Amico_1827 Amico_1827 1880893 1881570 + deoxyribose-phosphate aldolase KEGG: vvy:VV0527 deoxyribose-phosphate aldolase~TIGRFAM: deoxyribose-phosphate aldolase~PFAM: deoxyribose-phosphate aldolase/phospho-2- dehydro-3-deoxyheptonate aldolase gene gene1884 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1827 Amico_1828 Amico_1828 Amico_1828 1881606 1882811 - amidase%2C hydantoinase/carbamoylase family TIGRFAM: amidase%2C hydantoinase/carbamoylase family~KEGG: tgr:Tgr7_0180 amidase%2C hydantoinase/carbamoylase family~PFAM: peptidase M20 gene gene1885 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1828 Amico_1829 Amico_1829 Amico_1829 1882805 1883728 - dihydrodipicolinate synthetase PFAM: dihydrodipicolinate synthetase~KEGG: hypothetical protein gene gene1886 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1829 Amico_1830 Amico_1830 Amico_1830 1883759 1885045 - TRAP dicarboxylate transporter%2C DctM subunit KEGG: tmz:Tmz1t_0543 TRAP dicarboxylate transporter%2C DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1887 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1830 Amico_1831 Amico_1831 Amico_1831 1885058 1885549 - Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: vfm:VFMJ11_A0038 trap-type C4-dicarboxylate transport system%2C small permease component gene gene1888 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1831 Amico_1832 Amico_1832 Amico_1832 1885632 1886654 - TRAP dicarboxylate transporter%2C DctP subunit KEGG: sme:SM_b20036 putative ABC transporter periplasmic solute-binding protein~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene1889 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1832 Amico_1833 Amico_1833 Amico_1833 1886681 1887355 - Asp/Glu/hydantoin racemase PFAM: Asp/Glu/hydantoin racemase~KEGG: vap:Vapar_3936 Asp/Glu/hydantoin racemase gene gene1890 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1833 Amico_1834 Amico_1834 Amico_1834 1887373 1888770 - amidohydrolase PFAM: amidohydrolase%3B Amidohydrolase 3~KEGG: eum:ECUMN_0552 allantoinase gene gene1891 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1834 Amico_1835 Amico_1835 Amico_1835 1888755 1890170 - amidohydrolase PFAM: amidohydrolase%3B Amidohydrolase 3~KEGG: scl:sce6399 dihydropyrimidinase gene gene1892 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1835 Amico_1836 Amico_1836 Amico_1836 1890155 1890949 - transcriptional regulator%2C IclR family KEGG: pca:Pcar_0759 IclR family transcriptional regulator~PFAM: regulatory protein IclR%3B Transcriptional regulator IclR %3B regulatory protein MarR~SMART: regulatory protein IclR gene gene1893 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1836 Amico_1837 Amico_1837 Amico_1837 1891137 1892294 - aminotransferase class V PFAM: aminotransferase class V~KEGG: mxa:MXAN_0256 aminotransferase%2C class V gene gene1894 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1837 Amico_1838 Amico_1838 Amico_1838 1892323 1893075 - transcriptional regulator%2C IclR family KEGG: msu:MS0562 IclR protein~PFAM: regulatory protein IclR%3B Transcriptional regulator IclR~SMART: regulatory protein IclR gene gene1895 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1838 Amico_1839 Amico_1839 Amico_1839 1893214 1894284 - butyrate kinase KEGG: geo:Geob_0116 butyrate kinase~TIGRFAM: butyrate kinase~PFAM: acetate and butyrate kinase gene gene1896 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1839 Amico_1840 Amico_1840 Amico_1840 1894352 1895287 - Phosphate butyryltransferase KEGG: tau:Tola_2471 phosphate acetyltransferase~PFAM: phosphate acetyl/butaryl transferase gene gene1897 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1840 Amico_1841 Amico_1841 Amico_1841 1895329 1896237 - Phosphate butyryltransferase KEGG: bxe:Bxe_C0052 bifunctional enoyl-CoA hydratase/phosphate acetyltransferase~PFAM: phosphate acetyl/butaryl transferase gene gene1898 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1841 Amico_1842 Amico_1842 Amico_1842 1896234 1897328 - butyrate kinase KEGG: pca:Pcar_2852 butyrate kinase~TIGRFAM: butyrate kinase~PFAM: acetate and butyrate kinase gene gene1899 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1842 Amico_1843 Amico_1843 Amico_1843 1897382 1900036 - putative PAS/PAC sensor protein TIGRFAM: PAS sensor protein%3B metal dependent phophohydrolase~PFAM: metal-dependent phosphohydrolase HD sub domain%3B Metal-dependent hydrolase HDOD%3B PAS fold-4 domain protein%3B PAS fold domain protein~KEGG: sat:SYN_00099 two-component response regulator~SMART: metal-dependent phosphohydrolase HD region%3B PAS domain containing protein gene gene1900 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1843 Amico_1844 Amico_1844 Amico_1844 1900224 1901051 + aminotransferase class IV PFAM: aminotransferase class IV~KEGG: dat:HRM2_24560 IlvE gene gene1901 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1844 Amico_1845 Amico_1845 Amico_1845 1901112 1901972 - protein of unknown function DUF6 transmembrane PFAM: protein of unknown function DUF6 transmembrane~KEGG: dma:DMR_05100 hypothetical membrane protein gene gene1902 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1845 Amico_1846 Amico_1846 Amico_1846 1902074 1903444 + deoxyribodipyrimidine photolyase KEGG: dps:DP2576 DNA photolyase~TIGRFAM: deoxyribodipyrimidine photolyase~PFAM: DNA photolyase FAD-binding%3B DNA photolyase domain protein gene gene1903 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1846 Amico_1847 Amico_1847 Amico_1847 1903445 1904044 - BioY protein PFAM: BioY protein~KEGG: sat:SYN_00210 hypothetical protein gene gene1904 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1847 Amico_1848 Amico_1848 Amico_1848 1904163 1904783 - protein of unknown function UPF0029 PFAM: protein of unknown function UPF0029~KEGG: dat:HRM2_43180 hypothetical protein gene gene1905 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1848 Amico_1849 Amico_1849 Amico_1849 1904773 1905264 - histidine triad (HIT) protein PFAM: histidine triad (HIT) protein~KEGG: gur:Gura_2074 histidine triad (HIT) protein gene gene1906 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1849 Amico_1850 Amico_1850 Amico_1850 1905348 1905518 - hypothetical protein gene gene1907 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1850 Amico_1851 Amico_1851 Amico_1851 1905612 1906502 - parB-like partition protein TIGRFAM: parB-like partition protein~PFAM: ParB domain protein nuclease~KEGG: pca:Pcar_3138 partition protein ParB-like~SMART: ParB domain protein nuclease gene gene1908 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1851 Amico_1852 Amico_1852 Amico_1852 1906475 1907251 - Cobyrinic acid ac-diamide synthase PFAM: Cobyrinic acid ac-diamide synthase~KEGG: gme:Gmet_3413 chromosome segregation ATPase gene gene1909 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1852 Amico_1853 Amico_1853 Amico_1853 1907256 1907945 - methyltransferase GidB KEGG: hypothetical protein %3B K03501 glucose inhibited division protein B~TIGRFAM: methyltransferase GidB~PFAM: glucose inhibited division protein gene gene1910 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1853 Amico_1854 Amico_1854 Amico_1854 1908065 1908859 + nuclease (SNase domain protein) KEGG: dal:Dalk_0740 nuclease (SNase domain protein)~PFAM: nuclease (SNase domain protein)~SMART: nuclease (SNase domain protein) gene gene1911 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1854 Amico_1855 Amico_1855 Amico_1855 1909152 1912799 + hypothetical protein KEGG: ngk:NGK_2294 periplasmic protein gene gene1912 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1855 Amico_1856 Amico_1856 Amico_1856 1912825 1914438 + transcriptional regulator%2C CdaR PFAM: purine catabolism PurC domain protein~KEGG: dda:Dd703_0778 transcriptional regulator%2C PucR family gene gene1913 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1856 Amico_1857 Amico_1857 Amico_1857 1914739 1915470 + hypothetical protein gene gene1914 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1857 Amico_1858 Amico_1858 Amico_1858 1915492 1916181 + hypothetical protein gene gene1915 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1858 Amico_1859 Amico_1859 Amico_1859 1916256 1917464 + amidohydrolase TIGRFAM: amidohydrolase~KEGG: dvm:DvMF_1012 amidohydrolase~PFAM: peptidase M20%3B peptidase dimerisation domain protein gene gene1916 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1859 Amico_1860 Amico_1860 Amico_1860 1917557 1918744 + amidohydrolase TIGRFAM: amidohydrolase~KEGG: dvu:DVU2568 M20/M25/M40 family peptidase~PFAM: peptidase M20%3B peptidase dimerisation domain protein gene gene1917 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1860 Amico_1861 Amico_1861 Amico_1861 1918813 1919604 - ABC-3 protein PFAM: ABC-3 protein~KEGG: sfu:Sfum_2735 ABC-3 protein gene gene1918 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1861 Amico_1862 Amico_1862 Amico_1862 1919597 1920385 - ABC transporter related protein KEGG: sfu:Sfum_2734 ABC transporter related~PFAM: ABC transporter related~SMART: AAA ATPase gene gene1919 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1862 Amico_1863 Amico_1863 Amico_1863 1920382 1921221 - periplasmic solute binding protein PFAM: periplasmic solute binding protein~KEGG: dps:DP3060 Mn/Zn ABC transporter%2C periplasmic solute binding protein gene gene1920 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1863 Amico_1864 Amico_1864 Amico_1864 1921337 1921534 - hypothetical protein gene gene1921 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1864 Amico_1865 Amico_1865 Amico_1865 1921550 1922023 - hypothetical protein gene gene1922 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1865 Amico_1866 Amico_1866 Amico_1866 1922035 1924884 - hypothetical protein KEGG: dps:DP1964 hypothetical protein gene gene1923 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1866 Amico_1867 Amico_1867 Amico_1867 1924899 1925738 - conserved hypothetical protein KEGG: dps:DP1963 hypothetical protein gene gene1924 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1867 Amico_1868 Amico_1868 Amico_1868 1925735 1926220 - conserved hypothetical protein KEGG: eba:ebA2786 hypothetical protein gene gene1925 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1868 Amico_1869 Amico_1869 Amico_1869 1926288 1926839 - hypothetical protein gene gene1926 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1869 Amico_1870 Amico_1870 Amico_1870 1927145 1927816 - two component transcriptional regulator%2C LuxR family KEGG: sat:SYN_01019 two-component response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR~SMART: response regulator receiver%3B regulatory protein LuxR gene gene1927 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1870 Amico_1871 Amico_1871 Amico_1871 1927779 1929764 - PAS/PAC sensor signal transduction histidine kinase TIGRFAM: PAS sensor protein~PFAM: histidine kinase dimerisation and phosphoacceptor region%3B PAS fold-4 domain protein%3B ATP- binding region ATPase domain protein%3B PAS fold domain protein~KEGG: sat:SYN_00776 signal transduction histidine kinase~SMART: ATP-binding region ATPase domain protein%3B PAC repeat-containing protein%3B PAS domain containing protein gene gene1928 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1871 Amico_1872 Amico_1872 Amico_1872 1930109 1930951 + transcriptional regulator%2C RpiR family PFAM: sugar isomerase (SIS)%3B helix-turn-helix protein RpiR~KEGG: rso:RSc1377 hypothetical protein gene gene1929 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1872 Amico_1873 Amico_1873 Amico_1873 1931073 1932875 + Aldehyde ferredoxin oxidoreductase PFAM: aldehyde ferredoxin oxidoreductase%3B Aldehyde ferredoxin oxidoreductase~KEGG: gsu:GSU0910 aldehyde:ferredoxin oxidoreductase%2C tungsten-containing~SMART: Aldehyde ferredoxin oxidoreductase gene gene1930 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1873 Amico_1874 Amico_1874 Amico_1874 1933017 1933661 + transcriptional regulator%2C GntR family KEGG: bpt:Bpet2784 GntR family transcriptional regulator~PFAM: regulatory protein GntR HTH%3B GntR domain protein~SMART: regulatory protein GntR HTH gene gene1931 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1874 Amico_1875 Amico_1875 Amico_1875 1933685 1934368 + conserved hypothetical protein KEGG: bpt:Bpet2231 hypothetical protein gene gene1932 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1875 Amico_1876 Amico_1876 Amico_1876 1934380 1935183 + Nitrilase/cyanide hydratase and apolipoprotein N- acyltransferase PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase~KEGG: gme:Gmet_3536 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase gene gene1933 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1876 Amico_1877 Amico_1877 Amico_1877 1935197 1936189 + TRAP dicarboxylate transporter%2C DctP subunit KEGG: pmu:PM1252 hypothetical protein~TIGRFAM: TRAP dicarboxylate transporter%2C DctP subunit~PFAM: Extracellular solute-binding protein%2C family 7%2C bacteria gene gene1934 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1877 Amico_1878 Amico_1878 Amico_1878 1936256 1936744 + Tripartite ATP-independent periplasmic transporter DctQ component PFAM: Tripartite ATP-independent periplasmic transporter DctQ component~KEGG: mes:Meso_2517 tripartite ATP-independent periplasmic transporter DctQ gene gene1935 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1878 Amico_1879 Amico_1879 Amico_1879 1936752 1938023 + TRAP dicarboxylate transporter%2C DctM subunit KEGG: dvm:DvMF_2137 TRAP dicarboxylate transporter%2C DctM subunit~TIGRFAM: TRAP dicarboxylate transporter%2C DctM subunit~PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit gene gene1936 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1879 Amico_1880 Amico_1880 Amico_1880 1938160 1940070 - peptidase S9 prolyl oligopeptidase active site domain protein PFAM: peptidase S9 prolyl oligopeptidase active site domain protein%3B peptidase S15~KEGG: dat:HRM2_48810 putative dipeptidyl anminopeptidase gene gene1937 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1880 Amico_1881 Amico_1881 Amico_1881 1940237 1941028 + short-chain dehydrogenase/reductase SDR PFAM: short-chain dehydrogenase/reductase SDR~KEGG: sfu:Sfum_0112 short-chain dehydrogenase/reductase SDR gene gene1938 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1881 Amico_1882 Amico_1882 Amico_1882 1941101 1942246 - aldo/keto reductase PFAM: aldo/keto reductase%3B 4Fe-4S ferredoxin iron- sulfur binding domain protein~KEGG: dma:DMR_16570 aldo/keto reductase family protein gene gene1939 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1882 Amico_1883 Amico_1883 Amico_1883 1942378 1943127 + transcriptional regulator%2C IclR family KEGG: reh:H16_B0140 IclR family transcriptional regulator~PFAM: regulatory protein IclR%3B Transcriptional regulator IclR~SMART: regulatory protein IclR gene gene1940 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1883 Amico_1884 Amico_1884 Amico_1884 1943147 1943275 + hypothetical protein gene gene1941 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1884 Amico_1885 Amico_1885 Amico_1885 1943272 1944516 + imidazolonepropionase KEGG: sfu:Sfum_2377 imidazolonepropionase~TIGRFAM: imidazolonepropionase~PFAM: amidohydrolase%3B Amidohydrolase 3 gene gene1942 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1885 Amico_1886 Amico_1886 Amico_1886 1944549 1946582 + urocanate hydratase TIGRFAM: urocanate hydratase~KEGG: dat:HRM2_44070 HutU2~PFAM: Urocanase gene gene1943 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1886 Amico_1887 Amico_1887 Amico_1887 1946792 1946977 + pseudogene gene1944 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1887 Amico_1888 Amico_1888 Amico_1888 1947136 1948158 + extracellular solute-binding protein family 1 PFAM: extracellular solute-binding protein family 1~KEGG: pmr:PMI0190 ferric ABC transporter%2C iron- binding protein gene gene1945 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1888 Amico_1889 Amico_1889 Amico_1889 1948136 1949833 + binding-protein-dependent transport systems inner membrane component PFAM: binding-protein-dependent transport systems inner membrane component~KEGG: rlg:Rleg_6062 binding-protein-dependent transport systems inner membrane component gene gene1946 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1889 Amico_1890 Amico_1890 Amico_1890 1949805 1950773 + ABC transporter related protein KEGG: smd:Smed_4608 ABC transporter related~PFAM: ABC transporter related%3B Transport-associated OB domain protein~SMART: AAA ATPase gene gene1947 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1890 Amico_1891 Amico_1891 Amico_1891 1950977 1955239 + CoA-substrate-specific enzyme activase KEGG: dde:Dde_0967 CoA enzyme activase~TIGRFAM: CoA-substrate-specific enzyme activase~PFAM: Protein of unknown function DUF2229%2C CoA enzyme activase%3B ATPase BadF/BadG/BcrA/BcrD type gene gene1948 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1891 Amico_1892 Amico_1892 Amico_1892 1955241 1956002 - 4-hydroxy-2-oxovalerate aldolase KEGG: rfr:Rfer_1241 2-dehydro-3-deoxyglucarate aldolase~PFAM: HpcH/HpaI aldolase gene gene1949 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1892 Amico_1893 Amico_1893 Amico_1893 1956132 1958236 - pseudogene gene1950 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1893 Amico_1894 Amico_1894 Amico_1894 1958236 1958730 - hypothetical protein gene gene1951 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1894 Amico_1895 Amico_1895 Amico_1895 1959291 1959509 + hypothetical protein gene gene1952 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1895 Amico_1896 Amico_1896 Amico_1896 1959630 1961792 - heavy metal translocating P-type ATPase KEGG: tgr:Tgr7_2514 heavy metal translocating P- type ATPase~TIGRFAM: heavy metal translocating P-type ATPase%3B copper-translocating P-type ATPase%3B ATPase%2C P-type (transporting)%2C HAD superfamily%2C subfamily IC~PFAM: E1-E2 ATPase-associated domain protein%3B Heavy metal transport/detoxification protein%3B Haloacid dehalogenase domain protein hydrolase gene gene1953 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1896 Amico_1897 Amico_1897 Amico_1897 1961930 1962130 - Heavy metal transport/detoxification protein PFAM: Heavy metal transport/detoxification protein~KEGG: sde:Sde_1951 transglutaminase-like gene gene1954 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1897 Amico_1898 Amico_1898 Amico_1898 1962281 1963558 + histidine kinase KEGG: dal:Dalk_5004 histidine kinase~PFAM: Transcriptional regulator%2C histidine kinase sensor-like%3B ATP-binding region ATPase domain protein~SMART: ATP-binding region ATPase domain protein gene gene1955 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1898 Amico_1899 Amico_1899 Amico_1899 1963533 1964222 + two component transcriptional regulator%2C LuxR family KEGG: sat:SYN_01019 two-component response regulator~PFAM: response regulator receiver%3B regulatory protein LuxR%3B Sigma-70 region 4 type 2~SMART: response regulator receiver%3B regulatory protein LuxR gene gene1956 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1899 Amico_1900 Amico_1900 Amico_1900 1964390 1965661 + Glycine hydroxymethyltransferase KEGG: pca:Pcar_1442 serine hydroxymethyltransferase~PFAM: glycine hydroxymethyltransferase%3B aminotransferase class I and II%3B aromatic amino acid beta- eliminating lyase/threonine aldolase gene gene1957 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1900 Amico_1901 Amico_1901 Amico_1901 1965739 1966938 + amidohydrolase TIGRFAM: amidohydrolase~KEGG: dvm:DvMF_1012 amidohydrolase~PFAM: peptidase M20%3B peptidase dimerisation domain protein gene gene1958 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1901 Amico_1902 Amico_1902 Amico_1902 1967053 1967577 + conserved hypothetical protein KEGG: dal:Dalk_1835 hypothetical protein gene gene1959 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1902 Amico_1903 Amico_1903 Amico_1903 1967593 1968690 - peptidase T-like protein KEGG: sse:Ssed_3656 tripeptidase T~TIGRFAM: peptidase T-like protein~PFAM: peptidase dimerisation domain protein%3B peptidase M20 gene gene1960 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1903 Amico_1904 Amico_1904 Amico_1904 1968781 1969440 - Formiminotransferase-cyclodeaminase PFAM: Formiminotransferase-cyclodeaminase~KEGG: dat:HRM2_16720 FchA gene gene1961 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1904 Amico_1905 Amico_1905 Amico_1905 1969459 1970994 - histidine ammonia-lyase TIGRFAM: histidine ammonia-lyase~KEGG: sfu:Sfum_2378 histidine ammonia-lyase~PFAM: phenylalanine/histidine ammonia-lyase gene gene1962 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1905 Amico_1906 Amico_1906 Amico_1906 1971157 1972803 - hybrid cluster protein KEGG: dal:Dalk_2341 hydroxylamine reductase~TIGRFAM: hybrid cluster protein~PFAM: Prismane gene gene1963 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1906 Amico_1907 Amico_1907 Amico_1907 1972832 1973599 - 4Fe-4S ferredoxin iron-sulfur binding domain protein PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein~KEGG: gsu:GSU3247 iron-sulfur cluster-binding protein gene gene1964 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1907 Amico_1908 Amico_1908 Amico_1908 1973583 1974008 - transcriptional regulator%2C BadM/Rrf2 family KEGG: glo:Glov_1241 transcriptional regulator%2C BadM/Rrf2 family~TIGRFAM: transcriptional regulator%2C Rrf2 family~PFAM: protein of unknown function UPF0074 gene gene1965 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1908 Amico_1909 Amico_1909 Amico_1909 1974206 1975384 - cysteine desulfurase family protein KEGG: sat:SYN_01071 cysteine desulfurase / selenocysteine lyase~TIGRFAM: cysteine desulfurase family protein~PFAM: aminotransferase class V gene gene1966 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1909 Amico_1910 Amico_1910 Amico_1910 1975470 1976027 - hypothetical protein KEGG: sbl:Sbal_0630 hypothetical protein gene gene1967 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1910 Amico_1911 Amico_1911 Amico_1911 1976049 1976792 - hypothetical protein gene gene1968 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1911 Amico_1912 Amico_1912 Amico_1912 1976811 1978055 - antifreeze protein type I KEGG: pin:Ping_1307 antifreeze protein type I gene gene1969 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1912 Amico_1913 Amico_1913 Amico_1913 1978113 1979321 - major facilitator superfamily MFS_1 PFAM: major facilitator superfamily MFS_1~KEGG: glo:Glov_0095 major facilitator superfamily MFS_1 gene gene1970 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1913 Amico_1914 Amico_1914 Amico_1914 1979345 1980343 - phosphohydrolase (DHH superfamily)-like protein KEGG: cjd:JJD26997_1026 hypothetical protein gene gene1971 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_1914 Amico_R0001 Amico_R0001 Amico_R0001 299848 301367 + 16S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene284 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0001 Amico_R0002 Amico_R0002 Amico_R0002 301496 304472 + 23S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene285 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0002 Amico_R0003 Amico_R0003 Amico_R0003 304537 304651 + 5S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene286 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0003 Amico_R0004 Amico_R0004 Amico_R0004 325323 325398 + tRNA-Thr tRNA-Thr1 tRNA gene308 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0004 Amico_R0005 Amico_R0005 Amico_R0005 325414 325499 + tRNA-Tyr tRNA-Tyr1 tRNA gene309 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0005 Amico_R0006 Amico_R0006 Amico_R0006 325516 325591 + tRNA-Thr tRNA-Thr2 tRNA gene310 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0006 Amico_R0007 Amico_R0007 Amico_R0007 331977 332052 + tRNA-Trp tRNA-Trp1 tRNA gene318 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0007 Amico_R0008 Amico_R0008 Amico_R0008 337023 337097 + tRNA-Val tRNA-Val1 tRNA gene327 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0008 Amico_R0009 Amico_R0009 Amico_R0009 337139 337215 + tRNA-Asp tRNA-Asp1 tRNA gene328 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0009 Amico_R0010 Amico_R0010 Amico_R0010 337231 337306 + tRNA-Phe tRNA-Phe1 tRNA gene329 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0010 Amico_R0011 Amico_R0011 Amico_R0011 337322 337396 + tRNA-Gly tRNA-Gly1 tRNA gene330 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0011 Amico_R0012 Amico_R0012 Amico_R0012 337413 337486 + tRNA-Cys tRNA-Cys1 tRNA gene331 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0012 Amico_R0013 Amico_R0013 Amico_R0013 337509 337584 + tRNA-Asn tRNA-Asn1 tRNA gene332 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0013 Amico_R0014 Amico_R0014 Amico_R0014 417874 419393 + 16S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene407 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0014 Amico_R0015 Amico_R0015 Amico_R0015 419522 422498 + 23S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene408 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0015 Amico_R0016 Amico_R0016 Amico_R0016 422563 422677 + 5S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene409 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0016 Amico_R0017 Amico_R0017 Amico_R0017 464000 464176 + 6S RNA 6S / SsrS RNA as predicted by Rfam (RF00013)%2C score4 2.58 ncRNA gene450 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0017 Amico_R0018 Amico_R0018 Amico_R0018 477552 477638 + tRNA-Leu tRNA-Leu1 tRNA gene464 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0018 Amico_R0019 Amico_R0019 Amico_R0019 582387 582473 + tRNA-Leu tRNA-Leu2 tRNA gene574 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0019 Amico_R0020 Amico_R0020 Amico_R0020 595579 595654 + tRNA-Ala tRNA-Ala1 tRNA gene586 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0020 Amico_R0021 Amico_R0021 Amico_R0021 596316 596391 - tRNA-Glu tRNA-Glu2 tRNA gene588 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0021 Amico_R0022 Amico_R0022 Amico_R0022 596400 596473 - tRNA-Gln tRNA-Gln2 tRNA gene589 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0022 Amico_R0023 Amico_R0023 Amico_R0023 651412 651498 + tRNA-Leu tRNA-Leu3 tRNA gene640 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0023 Amico_R0024 Amico_R0024 Amico_R0024 731649 731724 + tRNA-Arg tRNA-Arg1 tRNA gene737 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0024 Amico_R0025 Amico_R0025 Amico_R0025 766127 766201 + tRNA-Gln tRNA-Gln1 tRNA gene768 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0025 Amico_R0026 Amico_R0026 Amico_R0026 794927 796446 + 16S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene790 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0026 Amico_R0027 Amico_R0027 Amico_R0027 796527 796603 + tRNA-Ile tRNA-Ile1 tRNA gene791 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0027 Amico_R0028 Amico_R0028 Amico_R0028 796611 796685 + tRNA-Ala tRNA-Ala2 tRNA gene792 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0028 Amico_R0029 Amico_R0029 Amico_R0029 796777 799753 + 23S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene793 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0029 Amico_R0030 Amico_R0030 Amico_R0030 799818 799932 + 5S ribosomal RNA RNAmmer 1.2%2C Lagesen et al.%2C Nucleic Acids Res. Apr2 2%2C 2007 rRNA gene794 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0030 Amico_R0031 Amico_R0031 Amico_R0031 809270 809358 + tRNA-Leu tRNA-Leu4 tRNA gene806 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0031 Amico_R0032 Amico_R0032 Amico_R0032 809399 809475 + tRNA-Met tRNA-Met1 tRNA gene807 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0032 Amico_R0033 Amico_R0033 Amico_R0033 809480 809556 + tRNA-Met tRNA-Met2 tRNA gene808 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0033 Amico_R0034 Amico_R0034 Amico_R0034 820203 820277 + tRNA-Val tRNA-Val2 tRNA gene816 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0034 Amico_R0035 Amico_R0035 Amico_R0035 837835 837910 + tRNA-Gly tRNA-Gly2 tRNA gene834 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0035 Amico_R0036 Amico_R0036 rnpB rnpB 846923 847209 + RNA component of RNaseP Bacterial RNase P class A as predicted by Rfam(RF000 10)%2C score 251.61 gene gene844 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0036 Amico_R0037 Amico_R0037 Amico_R0037 981006 981090 - tRNA-Leu tRNA-Leu5 tRNA gene976 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0037 Amico_R0038 Amico_R0038 Amico_R0038 986272 986347 - tRNA-Lys tRNA-Lys2 tRNA gene983 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0038 Amico_R0039 Amico_R0039 Amico_R0039 986375 986451 - tRNA-Arg tRNA-Arg5 tRNA gene984 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0039 Amico_R0040 Amico_R0040 Amico_R0040 986469 986545 - tRNA-His tRNA-His1 tRNA gene985 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0040 Amico_R0041 Amico_R0041 Amico_R0041 986555 986631 - tRNA-Arg tRNA-Arg4 tRNA gene986 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0041 Amico_R0042 Amico_R0042 Amico_R0042 986653 986729 - tRNA-Gly tRNA-Gly3 tRNA gene987 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0042 Amico_R0043 Amico_R0043 Amico_R0043 996234 996311 - tRNA-Pro tRNA-Pro3 tRNA gene1000 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0043 Amico_R0044 Amico_R0044 Amico_R0044 996322 996396 - tRNA-Ala tRNA-Ala3 tRNA gene1001 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0044 Amico_R0045 Amico_R0045 Amico_R0045 1004679 1004754 - tRNA-Arg tRNA-Arg3 tRNA gene1007 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0045 Amico_R0046 Amico_R0046 Amico_R0046 1116777 1116854 + tRNA-Pro tRNA-Pro1 tRNA gene1122 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0046 Amico_R0047 Amico_R0047 Amico_R0047 1170131 1170207 - tRNA-Met tRNA-Met3 tRNA gene1197 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0047 Amico_R0048 Amico_R0048 Amico_R0048 1243721 1243808 - tRNA-Ser tRNA-Ser4 tRNA gene1268 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0048 Amico_R0049 Amico_R0049 Amico_R0049 1251962 1252054 - tRNA-Ser tRNA-Ser3 tRNA gene1276 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0049 Amico_R0050 Amico_R0050 Amico_R0050 1275880 1275956 - tRNA-Arg tRNA-Arg2 tRNA gene1301 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0050 Amico_R0051 Amico_R0051 Amico_R0051 1280346 1280435 - tRNA-Ser tRNA-Ser2 tRNA gene1307 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0051 Amico_R0052 Amico_R0052 ssrA ssrA 1379682 1380032 - tmRNA as predicted by Rfam (RF00023)%2C score 199.64 tmRNA gene1400 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0052 Amico_R0053 Amico_R0053 Amico_R0053 1380619 1380696 - tRNA-Pro tRNA-Pro2 tRNA gene1402 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0053 Amico_R0054 Amico_R0054 Amico_R0054 1482118 1482192 + tRNA-Val tRNA-Val3 tRNA gene1506 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0054 Amico_R0055 Amico_R0055 Amico_R0055 1543940 1544015 - tRNA-Thr tRNA-Thr3 tRNA gene1565 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0055 Amico_R0056 Amico_R0056 Amico_R0056 1544031 1544106 - tRNA-Glu tRNA-Glu1 tRNA gene1566 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0056 Amico_R0057 Amico_R0057 Amico_R0057 1544111 1544186 - tRNA-Lys tRNA-Lys1 tRNA gene1567 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0057 Amico_R0058 Amico_R0058 Amico_R0058 1564276 1564363 + tRNA-Ser tRNA-Ser1 tRNA gene1590 http://www.ncbi.nlm.nih.gov/gene/?term=Amico_R0058