Amico_0633 aba9d18ee6d7cec7520fb1a897321033 221 ProSitePatterns PS00548 Ribosomal protein S3 signature. 163 197 - T 14-10-2018 IPR018280 Ribosomal protein S3, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0633 aba9d18ee6d7cec7520fb1a897321033 221 Pfam PF00189 Ribosomal protein S3, C-terminal domain 121 202 3.4E-39 T 14-10-2018 IPR001351 Ribosomal protein S3, C-terminal GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0633 aba9d18ee6d7cec7520fb1a897321033 221 Hamap MF_01309_B 30S ribosomal protein S3 [rpsC]. 1 206 36.694 T 14-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Amico_0633 aba9d18ee6d7cec7520fb1a897321033 221 TIGRFAM TIGR01009 rpsC_bact: ribosomal protein uS3 1 208 2.7E-88 T 14-10-2018 IPR005704 Ribosomal protein S3, bacterial GO:0003735|GO:0006412|GO:0015935 Amico_0633 aba9d18ee6d7cec7520fb1a897321033 221 SUPERFAMILY SSF54814 2 106 3.4E-35 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Amico_0633 aba9d18ee6d7cec7520fb1a897321033 221 Gene3D G3DSA:3.30.300.20 17 107 7.6E-28 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Amico_0633 aba9d18ee6d7cec7520fb1a897321033 221 SMART SM00322 60 125 0.0019 T 14-10-2018 IPR004087 K Homology domain GO:0003676 Amico_0633 aba9d18ee6d7cec7520fb1a897321033 221 Pfam PF07650 KH domain 39 110 2.6E-15 T 14-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0633 aba9d18ee6d7cec7520fb1a897321033 221 SUPERFAMILY SSF54821 107 205 2.62E-38 T 14-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0633 aba9d18ee6d7cec7520fb1a897321033 221 Gene3D G3DSA:3.30.1140.32 108 207 2.1E-41 T 14-10-2018 IPR036419 Ribosomal protein S3, C-terminal domain superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_1043 d0a2e491194b8271027d5c93ba40d329 352 Pfam PF03054 tRNA methyl transferase 3 342 5.3E-93 T 14-10-2018 Amico_1043 d0a2e491194b8271027d5c93ba40d329 352 TIGRFAM TIGR00420 trmU: tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase 3 342 1.5E-91 T 14-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Amico_1043 d0a2e491194b8271027d5c93ba40d329 352 Gene3D G3DSA:2.40.30.10 272 349 1.1E-9 T 14-10-2018 Amico_1043 d0a2e491194b8271027d5c93ba40d329 352 Gene3D G3DSA:3.40.50.620 1 201 6.3E-65 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1043 d0a2e491194b8271027d5c93ba40d329 352 Gene3D G3DSA:2.30.30.280 208 267 6.7E-21 T 14-10-2018 IPR023382 Adenine nucleotide alpha hydrolase-like domains GO:0016783 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Amico_1043 d0a2e491194b8271027d5c93ba40d329 352 SUPERFAMILY SSF52402 1 237 8.6E-47 T 14-10-2018 Amico_1043 d0a2e491194b8271027d5c93ba40d329 352 Hamap MF_00144 tRNA-specific 2-thiouridylase MnmA [mnmA]. 3 343 32.269 T 14-10-2018 IPR004506 tRNA-specific 2-thiouridylase GO:0008033|GO:0016740 MetaCyc: PWY-7887|MetaCyc: PWY-7892|Reactome: R-HSA-6787450 Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 Pfam PF08447 PAS fold 156 243 5.0E-14 T 14-10-2018 IPR013655 PAS fold-3 GO:0005515 Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 SUPERFAMILY SSF55785 141 253 1.61E-13 T 14-10-2018 IPR035965 PAS domain superfamily Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 Gene3D G3DSA:3.30.450.20 138 248 3.6E-17 T 14-10-2018 Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 Pfam PF01966 HD domain 289 408 1.6E-16 T 14-10-2018 IPR006674 HD domain Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 SUPERFAMILY SSF55785 21 131 8.05E-18 T 14-10-2018 IPR035965 PAS domain superfamily Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 Gene3D G3DSA:3.30.450.20 3 137 3.8E-19 T 14-10-2018 Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 SMART SM00091 132 201 190.0 T 14-10-2018 IPR000014 PAS domain Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 SMART SM00091 10 77 3.0E-4 T 14-10-2018 IPR000014 PAS domain Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 Pfam PF13426 PAS domain 23 123 3.8E-15 T 14-10-2018 IPR000014 PAS domain Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 Gene3D G3DSA:1.10.3210.10 262 454 1.6E-61 T 14-10-2018 Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 SMART SM00471 282 417 1.3E-7 T 14-10-2018 IPR003607 HD/PDEase domain Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 SUPERFAMILY SSF109604 279 447 2.15E-35 T 14-10-2018 Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 SMART SM00086 208 250 0.034 T 14-10-2018 IPR001610 PAC motif Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 SMART SM00086 83 124 10.0 T 14-10-2018 IPR001610 PAC motif Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 156 256 9.1E-10 T 14-10-2018 IPR000014 PAS domain Amico_0532 5f31ab1b5380df52b0a3f416a0101f31 457 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 11 131 4.2E-14 T 14-10-2018 IPR000014 PAS domain Amico_1262 8c460db10dc0cf09462908ceabafa896 220 Pfam PF14697 4Fe-4S dicluster domain 153 204 2.4E-12 T 14-10-2018 Amico_1262 8c460db10dc0cf09462908ceabafa896 220 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 158 169 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1262 8c460db10dc0cf09462908ceabafa896 220 Pfam PF13237 4Fe-4S dicluster domain 61 108 1.4E-9 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_1262 8c460db10dc0cf09462908ceabafa896 220 SUPERFAMILY SSF54862 56 131 1.51E-19 T 14-10-2018 Amico_1262 8c460db10dc0cf09462908ceabafa896 220 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 188 199 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1262 8c460db10dc0cf09462908ceabafa896 220 SUPERFAMILY SSF54862 140 212 2.93E-21 T 14-10-2018 Amico_1262 8c460db10dc0cf09462908ceabafa896 220 Gene3D G3DSA:3.30.70.20 147 207 1.7E-16 T 14-10-2018 Amico_1262 8c460db10dc0cf09462908ceabafa896 220 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 66 77 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1262 8c460db10dc0cf09462908ceabafa896 220 Gene3D G3DSA:3.30.70.3270 45 146 7.2E-20 T 14-10-2018 Amico_1262 8c460db10dc0cf09462908ceabafa896 220 PIRSF PIRSF005658 130 220 5.0E-13 T 14-10-2018 Amico_1262 8c460db10dc0cf09462908ceabafa896 220 PIRSF PIRSF005658 36 181 1.4E-16 T 14-10-2018 Amico_0043 b3a75b9371f8f2e9e0de03e8192bbe5c 289 Gene3D G3DSA:1.10.3720.10 61 286 4.8E-33 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0043 b3a75b9371f8f2e9e0de03e8192bbe5c 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 287 1.8E-19 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0043 b3a75b9371f8f2e9e0de03e8192bbe5c 289 SUPERFAMILY SSF161098 9 280 6.32E-34 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0043 b3a75b9371f8f2e9e0de03e8192bbe5c 289 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 6 281 2.9E-77 T 14-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 Amico_0367 cabf8e2e1745009841783fa974e321fa 706 SUPERFAMILY SSF52540 446 697 3.31E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0367 cabf8e2e1745009841783fa974e321fa 706 SMART SM01073 2 86 1.6E-26 T 14-10-2018 IPR003338 CDC48, N-terminal subdomain Amico_0367 cabf8e2e1745009841783fa974e321fa 706 Gene3D G3DSA:3.40.50.300 442 622 6.3E-65 T 14-10-2018 Amico_0367 cabf8e2e1745009841783fa974e321fa 706 Gene3D G3DSA:2.40.40.20 1 85 1.3E-25 T 14-10-2018 Amico_0367 cabf8e2e1745009841783fa974e321fa 706 Gene3D G3DSA:3.40.50.300 162 345 9.9E-67 T 14-10-2018 Amico_0367 cabf8e2e1745009841783fa974e321fa 706 Pfam PF02359 Cell division protein 48 (CDC48), N-terminal domain 3 85 5.8E-23 T 14-10-2018 IPR003338 CDC48, N-terminal subdomain Amico_0367 cabf8e2e1745009841783fa974e321fa 706 Pfam PF02933 Cell division protein 48 (CDC48), domain 2 110 163 5.7E-8 T 14-10-2018 IPR004201 CDC48, domain 2 Amico_0367 cabf8e2e1745009841783fa974e321fa 706 Gene3D G3DSA:1.10.8.60 346 441 2.8E-27 T 14-10-2018 Amico_0367 cabf8e2e1745009841783fa974e321fa 706 SUPERFAMILY SSF54585 88 178 3.92E-11 T 14-10-2018 IPR029067 CDC48 domain 2-like superfamily Amico_0367 cabf8e2e1745009841783fa974e321fa 706 SMART SM00382 484 623 7.8E-19 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0367 cabf8e2e1745009841783fa974e321fa 706 SMART SM00382 209 347 3.7E-21 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0367 cabf8e2e1745009841783fa974e321fa 706 SUPERFAMILY SSF52540 173 437 1.31E-69 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0367 cabf8e2e1745009841783fa974e321fa 706 Gene3D G3DSA:1.10.8.60 623 702 5.5E-20 T 14-10-2018 Amico_0367 cabf8e2e1745009841783fa974e321fa 706 SMART SM01072 102 167 7.1E-7 T 14-10-2018 IPR004201 CDC48, domain 2 Amico_0367 cabf8e2e1745009841783fa974e321fa 706 ProSitePatterns PS00674 AAA-protein family signature. 315 333 - T 14-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Amico_0367 cabf8e2e1745009841783fa974e321fa 706 SUPERFAMILY SSF50692 2 84 3.23E-22 T 14-10-2018 IPR009010 Aspartate decarboxylase-like domain superfamily Amico_0367 cabf8e2e1745009841783fa974e321fa 706 TIGRFAM TIGR01243 CDC48: AAA family ATPase, CDC48 subfamily 3 682 3.4E-269 T 14-10-2018 IPR005938 AAA ATPase, CDC48 family GO:0016787 Reactome: R-HSA-110320|Reactome: R-HSA-3371511|Reactome: R-HSA-382556|Reactome: R-HSA-532668|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5678895|Reactome: R-HSA-5689877|Reactome: R-HSA-5689896|Reactome: R-HSA-6798695|Reactome: R-HSA-8866654|Reactome: R-HSA-8876725 Amico_0367 cabf8e2e1745009841783fa974e321fa 706 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 213 344 1.8E-46 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_0367 cabf8e2e1745009841783fa974e321fa 706 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 488 620 7.7E-40 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_0945 dc186a1e462c232ae9ec01707d2467cf 143 Pfam PF01381 Helix-turn-helix 38 84 8.1E-9 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_0945 dc186a1e462c232ae9ec01707d2467cf 143 Gene3D G3DSA:1.10.260.40 17 91 1.4E-11 T 14-10-2018 Amico_0945 dc186a1e462c232ae9ec01707d2467cf 143 SUPERFAMILY SSF47413 24 97 1.04E-13 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Amico_0945 dc186a1e462c232ae9ec01707d2467cf 143 SMART SM00530 32 88 1.4E-5 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_1705 5b3ebaca866af6e146f1e14afdd4ec5d 461 Gene3D G3DSA:3.30.1330.120 271 405 3.1E-91 T 14-10-2018 Amico_1705 5b3ebaca866af6e146f1e14afdd4ec5d 461 Gene3D G3DSA:1.10.4100.10 28 421 3.1E-91 T 14-10-2018 Amico_1705 5b3ebaca866af6e146f1e14afdd4ec5d 461 Pfam PF03972 MmgE/PrpD family 9 445 4.1E-118 T 14-10-2018 IPR005656 MmgE/PrpD GO:0016829 Amico_1705 5b3ebaca866af6e146f1e14afdd4ec5d 461 SUPERFAMILY SSF103378 3 452 7.45E-103 T 14-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Amico_0899 f713f9d018e1f2cc286f1f66a82e43af 456 SUPERFAMILY SSF102735 1 131 1.7E-31 T 14-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 Amico_0899 f713f9d018e1f2cc286f1f66a82e43af 456 SUPERFAMILY SSF54534 89 245 2.95E-21 T 14-10-2018 Amico_0899 f713f9d018e1f2cc286f1f66a82e43af 456 PIRSF PIRSF003095 1 451 1.4E-84 T 14-10-2018 IPR005215 Trigger factor GO:0015031 Amico_0899 f713f9d018e1f2cc286f1f66a82e43af 456 Pfam PF05698 Bacterial trigger factor protein (TF) C-terminus 269 429 4.1E-19 T 14-10-2018 IPR008880 Trigger factor, C-terminal GO:0006457|GO:0015031 Amico_0899 f713f9d018e1f2cc286f1f66a82e43af 456 Pfam PF05697 Bacterial trigger factor protein (TF) 5 145 1.6E-35 T 14-10-2018 IPR008881 Trigger factor, ribosome-binding, bacterial GO:0006457|GO:0015031 Amico_0899 f713f9d018e1f2cc286f1f66a82e43af 456 Gene3D G3DSA:1.10.3120.10 115 433 2.7E-55 T 14-10-2018 IPR037041 Trigger factor, C-terminal domain superfamily GO:0006457|GO:0015031 Amico_0899 f713f9d018e1f2cc286f1f66a82e43af 456 TIGRFAM TIGR00115 tig: trigger factor 13 428 2.6E-88 T 14-10-2018 IPR005215 Trigger factor GO:0015031 Amico_0899 f713f9d018e1f2cc286f1f66a82e43af 456 Hamap MF_00303 Trigger factor [tig]. 1 437 17.147 T 14-10-2018 IPR005215 Trigger factor GO:0015031 Amico_0899 f713f9d018e1f2cc286f1f66a82e43af 456 Gene3D G3DSA:3.10.50.40 151 250 2.7E-55 T 14-10-2018 Amico_0899 f713f9d018e1f2cc286f1f66a82e43af 456 Gene3D G3DSA:3.30.70.1050 2 114 4.9E-28 T 14-10-2018 IPR036611 Trigger factor ribosome-binding domain superfamily GO:0006457|GO:0015031 Amico_0899 f713f9d018e1f2cc286f1f66a82e43af 456 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 158 235 1.3E-5 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Amico_0899 f713f9d018e1f2cc286f1f66a82e43af 456 SUPERFAMILY SSF109998 259 438 1.67E-24 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily Amico_1490 ea5b75099083d2bf9264f092c0fc78fd 244 Gene3D G3DSA:3.90.550.10 1 241 1.1E-89 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_1490 ea5b75099083d2bf9264f092c0fc78fd 244 TIGRFAM TIGR00466 kdsB: 3-deoxy-D-manno-octulosonate cytidylyltransferase 3 233 2.9E-69 T 14-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 Amico_1490 ea5b75099083d2bf9264f092c0fc78fd 244 Pfam PF02348 Cytidylyltransferase 5 209 2.3E-52 T 14-10-2018 IPR003329 Acylneuraminate cytidylyltransferase KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269|Reactome: R-HSA-4085001 Amico_1490 ea5b75099083d2bf9264f092c0fc78fd 244 Hamap MF_00057 8-amino-3,8-dideoxy-manno-octulosonate cytidylyltransferase [kdsB]. 1 240 40.494 T 14-10-2018 IPR004528 3-deoxy-D-manno-octulosonate cytidylyltransferase GO:0005737|GO:0008690 KEGG: 00540+2.7.7.38|MetaCyc: PWY-1269 Amico_1490 ea5b75099083d2bf9264f092c0fc78fd 244 SUPERFAMILY SSF53448 1 239 4.55E-58 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 Gene3D G3DSA:1.10.357.20 270 448 1.8E-54 T 14-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 SUPERFAMILY SSF158791 5 130 8.76E-29 T 14-10-2018 Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 Pfam PF03448 MgtE intracellular N domain 31 131 1.3E-25 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 SUPERFAMILY SSF54631 134 272 8.84E-32 T 14-10-2018 Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 Gene3D G3DSA:1.25.60.10 3 129 7.4E-29 T 14-10-2018 IPR038076 MgtE, N-terminal domain superfamily Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 SMART SM00924 31 134 5.7E-29 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 SMART SM00116 141 194 62.0 T 14-10-2018 IPR000644 CBS domain Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 SMART SM00116 204 252 9.3E-10 T 14-10-2018 IPR000644 CBS domain Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 Pfam PF01769 Divalent cation transporter 319 440 5.7E-28 T 14-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 SUPERFAMILY SSF161093 276 447 1.27E-46 T 14-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 TIGRFAM TIGR00400 mgtE: magnesium transporter 12 448 2.1E-147 T 14-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 Gene3D G3DSA:3.10.580.10 131 257 2.9E-42 T 14-10-2018 Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 Pfam PF00571 CBS domain 198 251 6.6E-9 T 14-10-2018 IPR000644 CBS domain Amico_0300 0c18f730bd84600f2a8b2277722bbc83 450 Pfam PF00571 CBS domain 134 192 5.7E-5 T 14-10-2018 IPR000644 CBS domain Amico_0449 150733bb605fb71296a9ced3574b32ce 493 Gene3D G3DSA:3.40.50.150 146 436 1.0E-114 T 14-10-2018 Amico_0449 150733bb605fb71296a9ced3574b32ce 493 Gene3D G3DSA:1.20.1260.30 2 137 3.9E-45 T 14-10-2018 IPR038333 N6 adenine-specific DNA methyltransferase, N-terminal domain superfamily Amico_0449 150733bb605fb71296a9ced3574b32ce 493 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 188 202 7.9E-20 T 14-10-2018 Amico_0449 150733bb605fb71296a9ced3574b32ce 493 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 262 274 7.9E-20 T 14-10-2018 Amico_0449 150733bb605fb71296a9ced3574b32ce 493 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 294 318 7.9E-20 T 14-10-2018 Amico_0449 150733bb605fb71296a9ced3574b32ce 493 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 165 181 7.9E-20 T 14-10-2018 Amico_0449 150733bb605fb71296a9ced3574b32ce 493 Pfam PF02384 N-6 DNA Methylase 145 453 3.6E-110 T 14-10-2018 IPR003356 DNA methylase, adenine-specific GO:0003677|GO:0006306|GO:0008170 Amico_0449 150733bb605fb71296a9ced3574b32ce 493 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 265 271 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Amico_0449 150733bb605fb71296a9ced3574b32ce 493 Pfam PF12161 HsdM N-terminal domain 8 134 2.2E-27 T 14-10-2018 IPR022749 N6 adenine-specific DNA methyltransferase, N-terminal domain Amico_0449 150733bb605fb71296a9ced3574b32ce 493 SUPERFAMILY SSF53335 6 492 7.66E-139 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0515 ebf48d105ee0bb7fcebe70c0ae7c0ece 377 SUPERFAMILY SSF52210 239 372 7.46E-32 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Amico_0515 ebf48d105ee0bb7fcebe70c0ae7c0ece 377 Gene3D G3DSA:3.40.50.261 229 377 2.7E-37 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Amico_0515 ebf48d105ee0bb7fcebe70c0ae7c0ece 377 Pfam PF08442 ATP-grasp domain 2 189 2.7E-52 T 14-10-2018 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Amico_0515 ebf48d105ee0bb7fcebe70c0ae7c0ece 377 Pfam PF00549 CoA-ligase 270 370 7.7E-6 T 14-10-2018 IPR005811 ATP-citrate lyase/succinyl-CoA ligase GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Amico_0515 ebf48d105ee0bb7fcebe70c0ae7c0ece 377 PIRSF PIRSF001554 1 377 1.6E-111 T 14-10-2018 IPR005809 Succinate--CoA synthetase, beta subunit GO:0006099 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Amico_0515 ebf48d105ee0bb7fcebe70c0ae7c0ece 377 SUPERFAMILY SSF56059 1 219 6.28E-53 T 14-10-2018 Amico_0515 ebf48d105ee0bb7fcebe70c0ae7c0ece 377 Gene3D G3DSA:3.30.470.20 1 217 2.1E-68 T 14-10-2018 Amico_0515 ebf48d105ee0bb7fcebe70c0ae7c0ece 377 Gene3D G3DSA:3.30.1490.20 21 92 2.1E-68 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Amico_1167 dbef5e8c9a90727ed3a8a022400f18cb 330 Pfam PF00586 AIR synthase related protein, N-terminal domain 58 157 3.9E-15 T 14-10-2018 IPR016188 PurM-like, N-terminal domain Amico_1167 dbef5e8c9a90727ed3a8a022400f18cb 330 Hamap MF_00741 Phosphoribosylformylglycinamidine cyclo-ligase [purM]. 3 330 38.883 T 14-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Amico_1167 dbef5e8c9a90727ed3a8a022400f18cb 330 Gene3D G3DSA:3.90.650.10 165 330 1.8E-56 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Amico_1167 dbef5e8c9a90727ed3a8a022400f18cb 330 Pfam PF02769 AIR synthase related protein, C-terminal domain 171 329 1.9E-24 T 14-10-2018 IPR010918 PurM-like, C-terminal domain Amico_1167 dbef5e8c9a90727ed3a8a022400f18cb 330 TIGRFAM TIGR00878 purM: phosphoribosylformylglycinamidine cyclo-ligase 3 329 4.0E-112 T 14-10-2018 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase GO:0004641|GO:0005737|GO:0006189 KEGG: 00230+6.3.3.1|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Amico_1167 dbef5e8c9a90727ed3a8a022400f18cb 330 SUPERFAMILY SSF55326 2 163 1.74E-41 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Amico_1167 dbef5e8c9a90727ed3a8a022400f18cb 330 SUPERFAMILY SSF56042 165 329 5.41E-47 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Amico_1167 dbef5e8c9a90727ed3a8a022400f18cb 330 Gene3D G3DSA:3.30.1330.10 1 164 5.1E-56 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 Gene3D G3DSA:3.40.50.800 281 402 6.3E-23 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 Gene3D G3DSA:3.30.930.10 1 280 1.3E-104 T 14-10-2018 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 Gene3D G3DSA:3.30.110.30 407 479 2.3E-14 T 14-10-2018 IPR017449 Prolyl-tRNA synthetase, class II GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 Pfam PF03129 Anticodon binding domain 287 386 3.6E-11 T 14-10-2018 IPR004154 Anticodon-binding Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 SMART SM00946 413 479 8.5E-21 T 14-10-2018 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 SUPERFAMILY SSF64586 408 479 1.92E-15 T 14-10-2018 IPR017449 Prolyl-tRNA synthetase, class II GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 PRINTS PR01046 Prolyl-tRNA synthetase signature 134 142 6.1E-9 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 PRINTS PR01046 Prolyl-tRNA synthetase signature 63 81 6.1E-9 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 PRINTS PR01046 Prolyl-tRNA synthetase signature 143 154 6.1E-9 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 PRINTS PR01046 Prolyl-tRNA synthetase signature 104 115 6.1E-9 T 14-10-2018 IPR002316 Proline-tRNA ligase, class IIa GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-379726 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 TIGRFAM TIGR00408 proS_fam_I: proline--tRNA ligase 6 479 5.1E-166 T 14-10-2018 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 SUPERFAMILY SSF52954 276 402 6.05E-24 T 14-10-2018 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 102 268 8.6E-18 T 14-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 Hamap MF_01571 Proline--tRNA ligase [proS]. 5 479 42.561 T 14-10-2018 IPR004499 Proline-tRNA ligase, class IIa, archaeal-type GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 Pfam PF09180 Prolyl-tRNA synthetase, C-terminal 414 479 1.7E-16 T 14-10-2018 IPR016061 Proline-tRNA ligase, class II, C-terminal GO:0000166|GO:0004827|GO:0005524|GO:0005737|GO:0006433 KEGG: 00970+6.1.1.15|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-6782315 Amico_0279 b8a4ccc74c1fe218e32af4e2bf5a6c01 479 SUPERFAMILY SSF55681 10 273 1.69E-77 T 14-10-2018 Amico_1310 39a3719b98c6b5e348b1394e0fd8763f 234 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 75 9.2E-20 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1310 39a3719b98c6b5e348b1394e0fd8763f 234 SUPERFAMILY SSF48008 97 230 5.23E-23 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1310 39a3719b98c6b5e348b1394e0fd8763f 234 SUPERFAMILY SSF46785 7 78 9.1E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1310 39a3719b98c6b5e348b1394e0fd8763f 234 Gene3D G3DSA:1.20.120.530 81 232 1.1E-27 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1310 39a3719b98c6b5e348b1394e0fd8763f 234 Gene3D G3DSA:1.10.10.10 2 76 2.5E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1310 39a3719b98c6b5e348b1394e0fd8763f 234 Pfam PF07729 FCD domain 100 221 1.5E-18 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1310 39a3719b98c6b5e348b1394e0fd8763f 234 SMART SM00345 17 76 1.1E-17 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1310 39a3719b98c6b5e348b1394e0fd8763f 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 1.4E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1310 39a3719b98c6b5e348b1394e0fd8763f 234 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 1.4E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1310 39a3719b98c6b5e348b1394e0fd8763f 234 SMART SM00895 100 222 3.3E-13 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1546 daafd9535a9f10aa9a9b57f53da321a5 556 SUPERFAMILY SSF52540 5 554 3.72E-247 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1546 daafd9535a9f10aa9a9b57f53da321a5 556 Gene3D G3DSA:3.40.50.300 7 438 5.7E-211 T 14-10-2018 Amico_1546 daafd9535a9f10aa9a9b57f53da321a5 556 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 104 114 - T 14-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Amico_1546 daafd9535a9f10aa9a9b57f53da321a5 556 Gene3D G3DSA:3.10.410.10 443 532 7.3E-34 T 14-10-2018 Amico_1546 daafd9535a9f10aa9a9b57f53da321a5 556 Gene3D G3DSA:3.30.1510.10 130 248 5.7E-211 T 14-10-2018 Amico_1546 daafd9535a9f10aa9a9b57f53da321a5 556 Pfam PF01268 Formate--tetrahydrofolate ligase 4 556 1.8E-271 T 14-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Amico_1546 daafd9535a9f10aa9a9b57f53da321a5 556 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 329 340 - T 14-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Amico_1546 daafd9535a9f10aa9a9b57f53da321a5 556 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 2 556 49.379 T 14-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Amico_0348 6bde1d20f629ec543f516059b919aba7 442 SUPERFAMILY SSF103473 15 437 1.96E-69 T 14-10-2018 IPR036259 MFS transporter superfamily Amico_0348 6bde1d20f629ec543f516059b919aba7 442 Gene3D G3DSA:1.20.1250.20 235 438 2.2E-25 T 14-10-2018 Amico_0348 6bde1d20f629ec543f516059b919aba7 442 Gene3D G3DSA:1.20.1250.20 18 218 1.4E-36 T 14-10-2018 Amico_0348 6bde1d20f629ec543f516059b919aba7 442 PIRSF PIRSF002808 9 440 3.6E-41 T 14-10-2018 IPR000849 Sugar phosphate transporter GO:0016021|GO:0022857|GO:0055085 Amico_0348 6bde1d20f629ec543f516059b919aba7 442 Pfam PF07690 Major Facilitator Superfamily 32 390 4.3E-42 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Amico_0814 3bc7a83c34580f1c4f6ef660057e0303 500 Pfam PF08245 Mur ligase middle domain 113 316 2.3E-50 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Amico_0814 3bc7a83c34580f1c4f6ef660057e0303 500 Gene3D G3DSA:3.40.1190.10 104 341 1.8E-79 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Amico_0814 3bc7a83c34580f1c4f6ef660057e0303 500 Gene3D G3DSA:3.90.190.20 346 495 5.7E-49 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Amico_0814 3bc7a83c34580f1c4f6ef660057e0303 500 Hamap MF_00208 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase [murE]. 1 492 29.787 T 14-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Amico_0814 3bc7a83c34580f1c4f6ef660057e0303 500 Pfam PF02875 Mur ligase family, glutamate ligase domain 337 421 1.9E-18 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Amico_0814 3bc7a83c34580f1c4f6ef660057e0303 500 Pfam PF01225 Mur ligase family, catalytic domain 36 77 1.2E-6 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Amico_0814 3bc7a83c34580f1c4f6ef660057e0303 500 Gene3D G3DSA:3.40.1390.10 5 102 1.3E-18 T 14-10-2018 Amico_0814 3bc7a83c34580f1c4f6ef660057e0303 500 ProSitePatterns PS01011 Folylpolyglutamate synthase signature 1. 111 134 - T 14-10-2018 IPR018109 Folylpolyglutamate synthetase, conserved site GO:0004326|GO:0005524|GO:0009396 Reactome: R-HSA-196757 Amico_0814 3bc7a83c34580f1c4f6ef660057e0303 500 SUPERFAMILY SSF63418 26 104 2.62E-19 T 14-10-2018 IPR035911 MurE/MurF, N-terminal Amico_0814 3bc7a83c34580f1c4f6ef660057e0303 500 TIGRFAM TIGR01085 murE: UDP-N-acetylmuramyl-tripeptide synthetase 33 490 1.4E-136 T 14-10-2018 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase GO:0005524|GO:0005737|GO:0008360|GO:0016881|GO:0051301 Amico_0814 3bc7a83c34580f1c4f6ef660057e0303 500 SUPERFAMILY SSF53244 337 491 3.27E-39 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Amico_0814 3bc7a83c34580f1c4f6ef660057e0303 500 SUPERFAMILY SSF53623 104 334 3.21E-64 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 Gene3D G3DSA:3.90.1440.10 229 351 6.6E-178 T 14-10-2018 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 SUPERFAMILY SSF81886 614 879 4.97E-62 T 14-10-2018 IPR036266 SecA, Wing/Scaffold superfamily Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 SUPERFAMILY SSF52540 400 612 1.62E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 Pfam PF02810 SEC-C motif 871 889 5.0E-9 T 14-10-2018 IPR004027 SEC-C motif Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 SMART SM00957 5 385 3.8E-270 T 14-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 SMART SM00958 228 341 4.3E-62 T 14-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 SUPERFAMILY SSF81767 227 350 3.27E-42 T 14-10-2018 IPR036670 SecA, preprotein cross-linking domain superfamily GO:0016020|GO:0017038 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 Hamap MF_01382 Protein translocase subunit SecA [secA]. 4 822 19.982 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 Pfam PF07516 SecA Wing and Scaffold domain 611 819 4.3E-57 T 14-10-2018 IPR011116 SecA Wing/Scaffold GO:0016020|GO:0017038 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 Pfam PF07517 SecA DEAD-like domain 12 385 4.7E-132 T 14-10-2018 IPR011115 SecA DEAD-like, N-terminal GO:0005524|GO:0016020|GO:0017038 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 Gene3D G3DSA:3.40.50.300 400 613 5.6E-93 T 14-10-2018 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 Gene3D G3DSA:3.10.450.50 831 890 5.7E-9 T 14-10-2018 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 Gene3D G3DSA:3.40.50.300 22 398 6.6E-178 T 14-10-2018 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 TIGRFAM TIGR00963 secA: preprotein translocase, SecA subunit 28 806 0.0 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 ProSitePatterns PS01312 SecA family signature. 483 498 - T 14-10-2018 IPR020937 SecA conserved site GO:0006605|GO:0006886|GO:0016020 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 Pfam PF01043 SecA preprotein cross-linking domain 233 341 4.7E-38 T 14-10-2018 IPR011130 SecA, preprotein cross-linking domain GO:0016020|GO:0017038 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 PRINTS PR00906 SecA protein signature 63 87 4.1E-67 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 PRINTS PR00906 SecA protein signature 359 376 4.1E-67 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 PRINTS PR00906 SecA protein signature 396 409 4.1E-67 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 PRINTS PR00906 SecA protein signature 117 127 4.1E-67 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 PRINTS PR00906 SecA protein signature 322 344 4.1E-67 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 PRINTS PR00906 SecA protein signature 170 190 4.1E-67 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 PRINTS PR00906 SecA protein signature 101 115 4.1E-67 T 14-10-2018 IPR000185 Protein translocase subunit SecA GO:0005524|GO:0006605|GO:0006886 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 Gene3D G3DSA:1.10.3060.10 615 822 3.4E-56 T 14-10-2018 Amico_1426 e512129f3c5e0d6415a5229cc36df868 891 SUPERFAMILY SSF52540 13 398 1.24E-80 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 Gene3D G3DSA:3.90.650.10 21 356 2.1E-121 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 Gene3D G3DSA:3.30.1330.10 35 184 2.1E-121 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 SUPERFAMILY SSF56042 561 716 4.49E-16 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 SUPERFAMILY SSF55326 27 186 2.69E-45 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 SUPERFAMILY SSF56042 190 417 2.09E-51 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 Pfam PF02769 AIR synthase related protein, C-terminal domain 192 345 4.6E-32 T 14-10-2018 IPR010918 PurM-like, C-terminal domain Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 SUPERFAMILY SSF55326 391 550 1.57E-43 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 PIRSF PIRSF001587 1 716 8.5E-259 T 14-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 Hamap MF_00420 Phosphoribosylformylglycinamidine synthase subunit PurL [purL]. 1 718 248.592 T 14-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 Gene3D G3DSA:3.30.1330.10 380 552 1.6E-57 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 Gene3D G3DSA:3.90.650.10 559 718 3.1E-13 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 TIGRFAM TIGR01736 FGAM_synth_II: phosphoribosylformylglycinamidine synthase II 9 702 1.0E-244 T 14-10-2018 IPR010074 Phosphoribosylformylglycinamidine subunit PurL GO:0004642|GO:0005737|GO:0006189 KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 Pfam PF00586 AIR synthase related protein, N-terminal domain 74 180 7.7E-19 T 14-10-2018 IPR016188 PurM-like, N-terminal domain Amico_1165 9414c8dacc22184813d666ed7f953a0d 718 Pfam PF00586 AIR synthase related protein, N-terminal domain 445 549 5.6E-21 T 14-10-2018 IPR016188 PurM-like, N-terminal domain Amico_1070 efb90ef5317a46fc9053a75e78cb2232 189 Pfam PF02620 Uncharacterized ACR, COG1399 66 183 5.3E-26 T 14-10-2018 IPR003772 Large ribosomal RNA subunit accumulation protein YceD Amico_1862 b7c222136dd807c27605318c7cc9cf5c 262 SMART SM00382 32 222 1.5E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1862 b7c222136dd807c27605318c7cc9cf5c 262 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1862 b7c222136dd807c27605318c7cc9cf5c 262 Pfam PF00005 ABC transporter 23 167 2.7E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1862 b7c222136dd807c27605318c7cc9cf5c 262 Gene3D G3DSA:3.40.50.300 2 232 1.1E-57 T 14-10-2018 Amico_1862 b7c222136dd807c27605318c7cc9cf5c 262 SUPERFAMILY SSF52540 5 211 7.56E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0355 ea2fa4423e720426c61fe0e6201b4915 400 Pfam PF13556 PucR C-terminal helix-turn-helix domain 328 385 1.3E-18 T 14-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain Amico_0355 ea2fa4423e720426c61fe0e6201b4915 400 Pfam PF05651 Putative sugar diacid recognition 3 133 1.6E-36 T 14-10-2018 IPR008599 Putative sugar diacid recognition Amico_0355 ea2fa4423e720426c61fe0e6201b4915 400 Gene3D G3DSA:1.10.10.2840 262 392 2.6E-24 T 14-10-2018 Amico_1326 7bc07f94a95c8c27afe5c50b78a52475 246 Pfam PF17131 Outer membrane lipoprotein-sorting protein 66 246 1.2E-55 T 14-10-2018 IPR033399 Putative outer membrane lipoprotein-sorting protein Amico_1326 7bc07f94a95c8c27afe5c50b78a52475 246 Gene3D G3DSA:2.50.20.10 19 246 2.3E-59 T 14-10-2018 Amico_1326 7bc07f94a95c8c27afe5c50b78a52475 246 SUPERFAMILY SSF89392 88 239 5.89E-5 T 14-10-2018 IPR029046 Lipoprotein localisation LolA/LolB/LppX Amico_0034 9f80b53d420d2d33f00774a4568ee45b 340 Gene3D G3DSA:3.40.190.10 33 320 5.3E-50 T 14-10-2018 Amico_0034 9f80b53d420d2d33f00774a4568ee45b 340 Pfam PF04069 Substrate binding domain of ABC-type glycine betaine transport system 32 311 3.3E-47 T 14-10-2018 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain GO:0022857|GO:0043190|GO:0055085 Amico_0034 9f80b53d420d2d33f00774a4568ee45b 340 SUPERFAMILY SSF53850 26 323 2.66E-62 T 14-10-2018 Amico_0034 9f80b53d420d2d33f00774a4568ee45b 340 Gene3D G3DSA:3.40.190.100 115 245 5.3E-50 T 14-10-2018 Amico_1717 e4822503fada216736e8103126e04d9e 221 Pfam PF02397 Bacterial sugar transferase 14 188 3.8E-67 T 14-10-2018 IPR003362 Bacterial sugar transferase Amico_1410 7c42c3056d042582d2b84fc6953e5f9c 234 TIGRFAM TIGR00044 TIGR00044: pyridoxal phosphate enzyme, YggS family 5 232 7.9E-59 T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Amico_1410 7c42c3056d042582d2b84fc6953e5f9c 234 PIRSF PIRSF004848 1 234 1.0E-70 T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Amico_1410 7c42c3056d042582d2b84fc6953e5f9c 234 Pfam PF01168 Alanine racemase, N-terminal domain 30 232 1.9E-27 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1410 7c42c3056d042582d2b84fc6953e5f9c 234 Gene3D G3DSA:3.20.20.10 2 234 6.0E-82 T 14-10-2018 IPR029066 PLP-binding barrel Amico_1410 7c42c3056d042582d2b84fc6953e5f9c 234 Hamap MF_02087 Pyridoxal phosphate homeostasis protein. 8 231 28.516 T 14-10-2018 IPR011078 Pyridoxal phosphate homeostasis protein GO:0030170 Amico_1410 7c42c3056d042582d2b84fc6953e5f9c 234 SUPERFAMILY SSF51419 4 230 7.33E-70 T 14-10-2018 IPR029066 PLP-binding barrel Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 Pfam PF01751 Toprim domain 419 528 2.7E-20 T 14-10-2018 IPR006171 TOPRIM domain Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 Hamap MF_01898 DNA gyrase subunit B [gyrB]. 5 634 89.237 T 14-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 Gene3D G3DSA:3.40.50.670 399 634 8.8E-109 T 14-10-2018 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 SUPERFAMILY SSF55874 7 219 5.5E-70 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 SUPERFAMILY SSF56719 394 627 1.02E-92 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR01159 DNA gyrase subunit B signature 313 329 5.9E-64 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR01159 DNA gyrase subunit B signature 361 375 5.9E-64 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR01159 DNA gyrase subunit B signature 375 395 5.9E-64 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR01159 DNA gyrase subunit B signature 221 243 5.9E-64 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR01159 DNA gyrase subunit B signature 603 619 5.9E-64 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR01159 DNA gyrase subunit B signature 587 599 5.9E-64 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR01159 DNA gyrase subunit B signature 197 210 5.9E-64 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR01159 DNA gyrase subunit B signature 470 479 5.9E-64 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR01159 DNA gyrase subunit B signature 8 18 5.9E-64 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR01159 DNA gyrase subunit B signature 182 197 5.9E-64 T 14-10-2018 IPR000565 DNA topoisomerase, type IIA, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 35 176 1.1E-20 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 Gene3D G3DSA:3.30.565.10 4 220 1.9E-88 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR00418 DNA topoisomerase II family signature 269 282 6.7E-71 T 14-10-2018 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR00418 DNA topoisomerase II family signature 37 52 6.7E-71 T 14-10-2018 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR00418 DNA topoisomerase II family signature 115 129 6.7E-71 T 14-10-2018 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR00418 DNA topoisomerase II family signature 486 502 6.7E-71 T 14-10-2018 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR00418 DNA topoisomerase II family signature 72 85 6.7E-71 T 14-10-2018 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR00418 DNA topoisomerase II family signature 420 434 6.7E-71 T 14-10-2018 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR00418 DNA topoisomerase II family signature 504 521 6.7E-71 T 14-10-2018 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR00418 DNA topoisomerase II family signature 566 582 6.7E-71 T 14-10-2018 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 PRINTS PR00418 DNA topoisomerase II family signature 524 536 6.7E-71 T 14-10-2018 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 Pfam PF00986 DNA gyrase B subunit, carboxyl terminus 563 622 2.3E-28 T 14-10-2018 IPR002288 DNA gyrase B subunit, C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 ProSitePatterns PS00177 DNA topoisomerase II signature. 422 430 - T 14-10-2018 IPR018522 DNA topoisomerase, type IIA, conserved site GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 SMART SM00433 37 627 0.0 T 14-10-2018 IPR001241 DNA topoisomerase, type IIA GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 Gene3D G3DSA:3.30.230.10 221 398 3.5E-67 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 SUPERFAMILY SSF54211 222 392 5.31E-55 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 TIGRFAM TIGR01059 gyrB: DNA gyrase, B subunit 8 634 3.1E-298 T 14-10-2018 IPR011557 DNA gyrase, subunit B GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 Pfam PF00204 DNA gyrase B 222 391 2.1E-56 T 14-10-2018 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Amico_1647 700d25a8a2aa3bec34b3fa2c31c8636a 634 SMART SM00387 33 177 9.4E-27 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_1372 3f5a0f2d0c83da1f9c1dff351eaf2c6e 490 Hamap MF_00121 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B [gatB]. 5 489 36.001 T 14-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Amico_1372 3f5a0f2d0c83da1f9c1dff351eaf2c6e 490 ProSitePatterns PS01234 Glutamyl-tRNA(Gln) amidotransferase subunit B signature. 154 168 - T 14-10-2018 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site GO:0016884 Amico_1372 3f5a0f2d0c83da1f9c1dff351eaf2c6e 490 Pfam PF02637 GatB domain 337 488 7.9E-31 T 14-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Amico_1372 3f5a0f2d0c83da1f9c1dff351eaf2c6e 490 Pfam PF02934 GatB/GatE catalytic domain 9 297 9.6E-111 T 14-10-2018 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic GO:0016874 Amico_1372 3f5a0f2d0c83da1f9c1dff351eaf2c6e 490 SUPERFAMILY SSF89095 306 408 3.14E-29 T 14-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 Amico_1372 3f5a0f2d0c83da1f9c1dff351eaf2c6e 490 TIGRFAM TIGR00133 gatB: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit 5 488 2.2E-161 T 14-10-2018 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit GO:0016884 Amico_1372 3f5a0f2d0c83da1f9c1dff351eaf2c6e 490 SUPERFAMILY SSF55931 8 305 1.31E-114 T 14-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Amico_1372 3f5a0f2d0c83da1f9c1dff351eaf2c6e 490 Gene3D G3DSA:1.10.150.380 306 411 7.8E-29 T 14-10-2018 Amico_1372 3f5a0f2d0c83da1f9c1dff351eaf2c6e 490 Gene3D G3DSA:1.10.10.410 428 490 1.1E-11 T 14-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Amico_1372 3f5a0f2d0c83da1f9c1dff351eaf2c6e 490 SMART SM00845 337 488 8.7E-36 T 14-10-2018 IPR018027 Asn/Gln amidotransferase GO:0016884 Amico_1638 4bb43bd7f7c8bf766dab63cd0a68b487 595 Pfam PF03190 Protein of unknown function, DUF255 5 166 3.6E-71 T 14-10-2018 IPR004879 Domain of unknown function DUF255 Amico_1638 4bb43bd7f7c8bf766dab63cd0a68b487 595 Gene3D G3DSA:3.40.30.10 3 175 5.4E-67 T 14-10-2018 Amico_1638 4bb43bd7f7c8bf766dab63cd0a68b487 595 SUPERFAMILY SSF52833 5 127 1.23E-31 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Amico_1638 4bb43bd7f7c8bf766dab63cd0a68b487 595 SUPERFAMILY SSF48208 190 536 3.25E-71 T 14-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Amico_1638 4bb43bd7f7c8bf766dab63cd0a68b487 595 Gene3D G3DSA:1.50.10.10 361 587 1.2E-8 T 14-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Amico_1638 4bb43bd7f7c8bf766dab63cd0a68b487 595 PIRSF PIRSF006402 1 595 1.2E-223 T 14-10-2018 IPR024705 Spermatogenesis-associated protein 20 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 Gene3D G3DSA:3.30.230.10 592 777 7.0E-71 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 Gene3D G3DSA:2.30.130.40 7 118 7.3E-31 T 14-10-2018 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 SUPERFAMILY SSF52540 302 557 1.15E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 Gene3D G3DSA:1.10.8.60 493 589 7.5E-29 T 14-10-2018 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 SUPERFAMILY SSF54211 601 775 2.69E-51 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 ProSitePatterns PS01046 ATP-dependent serine proteases, lon family, serine active site. 681 689 - T 14-10-2018 IPR008268 Peptidase S16, active site GO:0004176|GO:0004252|GO:0006508 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 357 376 1.1E-46 T 14-10-2018 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 731 749 1.1E-46 T 14-10-2018 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 708 727 1.1E-46 T 14-10-2018 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 600 616 1.1E-46 T 14-10-2018 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 678 697 1.1E-46 T 14-10-2018 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 SMART SM00382 349 494 1.5E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 353 490 4.5E-23 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 575 777 1.0E-75 T 14-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 PIRSF PIRSF001174 2 779 1.4E-304 T 14-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 Gene3D G3DSA:1.20.58.1480 124 246 4.2E-38 T 14-10-2018 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 Hamap MF_01973 Lon protease [lon]. 12 777 64.721 T 14-10-2018 IPR027543 Lon protease, bacterial GO:0004176|GO:0004252|GO:0005524|GO:0006508|GO:0043565 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 SMART SM00464 11 203 4.5E-53 T 14-10-2018 IPR003111 Lon, substrate-binding domain Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 Gene3D G3DSA:3.40.50.300 313 492 3.5E-67 T 14-10-2018 Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 Pfam PF02190 ATP-dependent protease La (LON) substrate-binding domain 14 201 1.5E-34 T 14-10-2018 IPR003111 Lon, substrate-binding domain Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 SUPERFAMILY SSF88697 14 201 7.46E-40 T 14-10-2018 IPR015947 PUA-like superfamily Amico_0896 ffa1a3d4d96348cd1461587a760ff5c5 779 TIGRFAM TIGR00763 lon: endopeptidase La 14 776 3.1E-285 T 14-10-2018 IPR004815 Lon protease, bacterial/eukaryotic-type GO:0004176|GO:0005524|GO:0006508 Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 SUPERFAMILY SSF52156 434 560 9.15E-37 T 14-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 SUPERFAMILY SSF50447 555 651 5.89E-33 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 Pfam PF04760 Translation initiation factor IF-2, N-terminal region 2 51 9.4E-16 T 14-10-2018 IPR006847 Translation initiation factor IF-2, N-terminal Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 ProSitePatterns PS01176 Initiation factor 2 signature. 604 626 - T 14-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 Pfam PF00009 Elongation factor Tu GTP binding domain 158 314 1.7E-34 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 158 312 3.5E-35 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 Gene3D G3DSA:3.40.50.10050 447 554 3.0E-37 T 14-10-2018 IPR036925 Translation initiation factor IF-2, domain 3 superfamily Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 SUPERFAMILY SSF50447 329 408 8.05E-23 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 TIGRFAM TIGR00487 IF-2: translation initiation factor IF-2 71 652 8.5E-237 T 14-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 Pfam PF11987 Translation-initiation factor 2 439 543 2.6E-36 T 14-10-2018 IPR023115 Translation initiation factor IF- 2, domain 3 Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 SUPERFAMILY SSF52540 149 325 2.62E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 Gene3D G3DSA:2.40.30.10 325 443 6.0E-39 T 14-10-2018 Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 Gene3D G3DSA:1.10.10.2480 1 71 1.7E-18 T 14-10-2018 Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 Hamap MF_00100_B Translation initiation factor IF-2 [infB]. 3 651 16.57 T 14-10-2018 IPR000178 Translation initiation factor aIF-2, bacterial-like GO:0003743|GO:0005525|GO:0005622|GO:0006413 Reactome: R-HSA-5368286 Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 Gene3D G3DSA:2.40.30.10 555 652 1.9E-35 T 14-10-2018 Amico_0972 ef5df3ff94f975a8576e70b970bd2d1e 654 Gene3D G3DSA:3.40.50.300 150 324 1.2E-74 T 14-10-2018 Amico_1601 665e36f782f9ba170d2b515486922051 309 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 156 303 2.5E-26 T 14-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Amico_1601 665e36f782f9ba170d2b515486922051 309 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 52 59 - T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Amico_1601 665e36f782f9ba170d2b515486922051 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 269 292 1.3E-16 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Amico_1601 665e36f782f9ba170d2b515486922051 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 257 266 1.3E-16 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Amico_1601 665e36f782f9ba170d2b515486922051 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 137 148 1.3E-16 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Amico_1601 665e36f782f9ba170d2b515486922051 309 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 52 71 1.3E-16 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Amico_1601 665e36f782f9ba170d2b515486922051 309 SUPERFAMILY SSF53671 2 306 1.57E-93 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Amico_1601 665e36f782f9ba170d2b515486922051 309 Hamap MF_00001 Aspartate carbamoyltransferase [pyrB]. 5 306 39.16 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_1601 665e36f782f9ba170d2b515486922051 309 Gene3D G3DSA:3.40.50.1370 7 300 1.0E-87 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Amico_1601 665e36f782f9ba170d2b515486922051 309 Gene3D G3DSA:3.40.50.1370 137 291 1.0E-87 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Amico_1601 665e36f782f9ba170d2b515486922051 309 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 6 147 4.0E-38 T 14-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Amico_1601 665e36f782f9ba170d2b515486922051 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 285 299 7.4E-32 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_1601 665e36f782f9ba170d2b515486922051 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 136 153 7.4E-32 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_1601 665e36f782f9ba170d2b515486922051 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 261 266 7.4E-32 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_1601 665e36f782f9ba170d2b515486922051 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 80 89 7.4E-32 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_1601 665e36f782f9ba170d2b515486922051 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 220 229 7.4E-32 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_1601 665e36f782f9ba170d2b515486922051 309 PRINTS PR00101 Aspartate carbamoyltransferase signature 42 64 7.4E-32 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_1601 665e36f782f9ba170d2b515486922051 309 TIGRFAM TIGR00670 asp_carb_tr: aspartate carbamoyltransferase 6 304 1.1E-89 T 14-10-2018 IPR002082 Aspartate carbamoyltransferase GO:0004070|GO:0006207 KEGG: 00240+2.1.3.2|KEGG: 00250+2.1.3.2|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 PRINTS PR00419 Adrenodoxin reductase family signature 169 182 5.3E-17 T 14-10-2018 Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 PRINTS PR00419 Adrenodoxin reductase family signature 211 221 5.3E-17 T 14-10-2018 Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 PRINTS PR00419 Adrenodoxin reductase family signature 286 300 5.3E-17 T 14-10-2018 Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 PRINTS PR00419 Adrenodoxin reductase family signature 146 168 5.3E-17 T 14-10-2018 Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 SUPERFAMILY SSF51971 146 397 5.06E-67 T 14-10-2018 Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 SUPERFAMILY SSF51971 381 463 4.12E-7 T 14-10-2018 Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 Gene3D G3DSA:1.10.1060.10 8 143 5.2E-41 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 Pfam PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster 20 132 1.9E-42 T 14-10-2018 IPR028261 Dihydroprymidine dehydrogenase domain II Reactome: R-HSA-73621 Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 146 451 3.0E-29 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 TIGRFAM TIGR01316 gltA: glutamate synthase (NADPH), homotetrameric 17 463 4.5E-177 T 14-10-2018 IPR006004 Glutamate synthase (NADPH), homotetrameric KEGG: 00195+1.18.1.2|MetaCyc: PWY-101 Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 Gene3D G3DSA:3.50.50.60 144 281 4.3E-36 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 Gene3D G3DSA:3.50.50.60 282 471 1.6E-33 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1369 a1b50f06b875fe199211abbd9dc77612 471 SUPERFAMILY SSF46548 9 154 3.4E-36 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Amico_0164 bad369c4b329b59db038f300fa2db199 147 Pfam PF01592 NifU-like N terminal domain 3 122 1.3E-50 T 14-10-2018 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal GO:0005506|GO:0016226|GO:0051536 Reactome: R-HSA-1362409 Amico_0164 bad369c4b329b59db038f300fa2db199 147 TIGRFAM TIGR03419 NifU_clost: FeS cluster assembly scaffold protein NifU 3 122 8.8E-67 T 14-10-2018 IPR017787 NIF system FeS cluster assembly, NifU-like Amico_0164 bad369c4b329b59db038f300fa2db199 147 Gene3D G3DSA:3.90.1010.10 2 145 2.2E-60 T 14-10-2018 Amico_0164 bad369c4b329b59db038f300fa2db199 147 SUPERFAMILY SSF82649 1 127 9.68E-48 T 14-10-2018 Amico_0496 7efbbcd27532958a04587bfb8c08fb39 251 Pfam PF02682 Carboxyltransferase domain, subdomain C and D 10 210 3.3E-73 T 14-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Amico_0496 7efbbcd27532958a04587bfb8c08fb39 251 SUPERFAMILY SSF160467 10 102 5.49E-20 T 14-10-2018 Amico_0496 7efbbcd27532958a04587bfb8c08fb39 251 TIGRFAM TIGR00370 TIGR00370: sensor histidine kinase inhibitor, KipI family 15 219 1.2E-61 T 14-10-2018 IPR010016 KipI family KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Amico_0496 7efbbcd27532958a04587bfb8c08fb39 251 Gene3D G3DSA:3.30.1360.40 10 91 4.7E-21 T 14-10-2018 Amico_0496 7efbbcd27532958a04587bfb8c08fb39 251 Gene3D G3DSA:2.40.100.10 96 235 2.9E-55 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily Amico_0496 7efbbcd27532958a04587bfb8c08fb39 251 SUPERFAMILY SSF50891 98 227 6.45E-46 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily Amico_0496 7efbbcd27532958a04587bfb8c08fb39 251 SMART SM00796 9 211 8.4E-91 T 14-10-2018 IPR003833 Carboxyltransferase domain, subdomain C and D Amico_1459 0885f5f2925a40093a80e1c98fbbe187 231 Gene3D G3DSA:3.40.50.300 3 228 1.2E-61 T 14-10-2018 Amico_1459 0885f5f2925a40093a80e1c98fbbe187 231 SUPERFAMILY SSF52540 3 223 1.95E-65 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1459 0885f5f2925a40093a80e1c98fbbe187 231 Pfam PF00005 ABC transporter 19 166 2.9E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1459 0885f5f2925a40093a80e1c98fbbe187 231 SMART SM00382 28 224 1.9E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1459 0885f5f2925a40093a80e1c98fbbe187 231 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0904 739a092ecfceb6638fcf2360d2cb15bf 383 Gene3D G3DSA:3.90.550.10 4 199 6.5E-46 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_0904 739a092ecfceb6638fcf2360d2cb15bf 383 Pfam PF01966 HD domain 224 311 4.5E-10 T 14-10-2018 IPR006674 HD domain Amico_0904 739a092ecfceb6638fcf2360d2cb15bf 383 SUPERFAMILY SSF109604 220 313 1.3E-17 T 14-10-2018 Amico_0904 739a092ecfceb6638fcf2360d2cb15bf 383 SMART SM00471 219 323 1.2E-4 T 14-10-2018 IPR003607 HD/PDEase domain Amico_0904 739a092ecfceb6638fcf2360d2cb15bf 383 SUPERFAMILY SSF53448 7 192 3.15E-27 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_0904 739a092ecfceb6638fcf2360d2cb15bf 383 Gene3D G3DSA:1.10.3210.10 212 337 1.6E-11 T 14-10-2018 Amico_0904 739a092ecfceb6638fcf2360d2cb15bf 383 Pfam PF12804 MobA-like NTP transferase domain 10 169 1.3E-31 T 14-10-2018 IPR025877 MobA-like NTP transferase Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 ProSitePatterns PS01166 RNA polymerases beta chain signature. 896 908 - T 14-10-2018 IPR007121 RNA polymerase, beta subunit, conserved site GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Gene3D G3DSA:3.90.1110.10 263 380 2.1E-27 T 14-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Gene3D G3DSA:3.90.1110.10 156 247 2.9E-20 T 14-10-2018 IPR037034 RNA polymerase Rpb2, domain 2 superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Gene3D G3DSA:2.40.270.10 954 1027 9.7E-24 T 14-10-2018 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Pfam PF04560 RNA polymerase Rpb2, domain 7 1051 1125 2.4E-25 T 14-10-2018 IPR007641 RNA polymerase Rpb2, domain 7 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Gene3D G3DSA:3.90.1100.10 588 653 9.3E-21 T 14-10-2018 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Gene3D G3DSA:3.90.1100.10 381 564 3.2E-67 T 14-10-2018 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Gene3D G3DSA:3.90.1800.10 1037 1087 4.1E-10 T 14-10-2018 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Hamap MF_01321 DNA-directed RNA polymerase subunit beta [rpoB]. 14 1127 12.302 T 14-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Pfam PF00562 RNA polymerase Rpb2, domain 6 657 1049 4.0E-158 T 14-10-2018 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Pfam PF04561 RNA polymerase Rpb2, domain 2 149 219 3.8E-7 T 14-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Pfam PF04561 RNA polymerase Rpb2, domain 2 288 394 4.7E-16 T 14-10-2018 IPR007642 RNA polymerase Rpb2, domain 2 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Pfam PF10385 RNA polymerase beta subunit external 1 domain 533 596 3.9E-20 T 14-10-2018 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 SUPERFAMILY SSF64484 15 1129 0.0 T 14-10-2018 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Pfam PF04565 RNA polymerase Rpb2, domain 3 454 522 1.4E-29 T 14-10-2018 IPR007645 RNA polymerase Rpb2, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 TIGRFAM TIGR02013 rpoB: DNA-directed RNA polymerase, beta subunit 10 870 0.0 T 14-10-2018 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Gene3D G3DSA:2.40.50.150 759 904 2.3E-60 T 14-10-2018 IPR014724 RNA polymerase Rpb2, OB-fold GO:0003899 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Gene3D G3DSA:3.90.1100.10 19 155 9.2E-47 T 14-10-2018 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Gene3D G3DSA:2.40.50.100 654 727 4.7E-27 T 14-10-2018 Amico_0619 6bd6dc35c35cde553e719fc9b472f2a3 1206 Pfam PF04563 RNA polymerase beta subunit 30 440 1.1E-24 T 14-10-2018 IPR007644 RNA polymerase, beta subunit, protrusion GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0759 f057e9bde809d626e1516a2e07c08473 292 SUPERFAMILY SSF55681 1 280 1.96E-129 T 14-10-2018 Amico_0759 f057e9bde809d626e1516a2e07c08473 292 Hamap MF_00254 Glycine--tRNA ligase alpha subunit [glyQ]. 1 281 57.88 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0759 f057e9bde809d626e1516a2e07c08473 292 TIGRFAM TIGR00388 glyQ: glycine--tRNA ligase, alpha subunit 2 289 5.0E-150 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0759 f057e9bde809d626e1516a2e07c08473 292 Gene3D G3DSA:1.20.58.180 205 284 4.8E-33 T 14-10-2018 Amico_0759 f057e9bde809d626e1516a2e07c08473 292 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 156 171 5.3E-64 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0759 f057e9bde809d626e1516a2e07c08473 292 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 76 96 5.3E-64 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0759 f057e9bde809d626e1516a2e07c08473 292 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 55 70 5.3E-64 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0759 f057e9bde809d626e1516a2e07c08473 292 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 241 257 5.3E-64 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0759 f057e9bde809d626e1516a2e07c08473 292 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 133 153 5.3E-64 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0759 f057e9bde809d626e1516a2e07c08473 292 PRINTS PR01044 Glycyl-tRNA synthetase alpha subunit signature 107 131 5.3E-64 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0759 f057e9bde809d626e1516a2e07c08473 292 Pfam PF02091 Glycyl-tRNA synthetase alpha subunit 3 279 2.2E-150 T 14-10-2018 IPR002310 Glycine-tRNA ligase, alpha subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0759 f057e9bde809d626e1516a2e07c08473 292 Gene3D G3DSA:3.30.930.10 1 204 1.6E-107 T 14-10-2018 Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 SMART SM00382 140 276 2.1E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 Gene3D G3DSA:3.30.300.180 3 82 1.5E-12 T 14-10-2018 IPR038454 DnaA, N-terminal domain superfamily Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 Pfam PF11638 DnaA N-terminal domain 9 68 2.7E-8 T 14-10-2018 IPR024633 DnaA N-terminal domain Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 Pfam PF08299 Bacterial dnaA protein helix-turn-helix 353 421 2.9E-28 T 14-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 Hamap MF_00377 Chromosomal replication initiator protein DnaA [dnaA]. 7 439 31.572 T 14-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 SMART SM00760 352 421 1.1E-33 T 14-10-2018 IPR013159 Chromosomal replication initiator, DnaA C-terminal GO:0005524|GO:0006270|GO:0006275|GO:0043565 Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 Pfam PF00308 Bacterial dnaA protein 108 325 1.9E-98 T 14-10-2018 IPR013317 Chromosomal replication initiator protein DnaA Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 173 187 1.5E-49 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 239 266 1.5E-49 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 141 161 1.5E-49 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 402 421 1.5E-49 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 PRINTS PR00051 Bacterial chromosomal replication initiator (DNAA) signature 205 219 1.5E-49 T 14-10-2018 IPR020591 Chromosomal replication control, initiator DnaA-like Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 TIGRFAM TIGR00362 DnaA: chromosomal replication initiator protein DnaA 10 442 2.5E-167 T 14-10-2018 IPR001957 Chromosomal replication control, initiator DnaA GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 SUPERFAMILY SSF52540 108 319 1.76E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 SUPERFAMILY SSF48295 339 442 2.07E-33 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 Gene3D G3DSA:1.10.8.60 274 342 1.1E-27 T 14-10-2018 Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 Gene3D G3DSA:3.40.50.300 107 273 5.9E-52 T 14-10-2018 Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 Gene3D G3DSA:1.10.1750.10 343 442 6.2E-33 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Amico_0001 e216ba4aa2a1f88730fac0dcb1ad3999 442 ProSitePatterns PS01008 DnaA protein signature. 402 421 - T 14-10-2018 IPR018312 Chromosomal replication control, initiator DnaA, conserved site GO:0003677|GO:0003688|GO:0005524|GO:0006270|GO:0006275 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 TIGRFAM TIGR00398 metG: methionine--tRNA ligase 6 478 1.4E-164 T 14-10-2018 IPR014758 Methionyl-tRNA synthetase GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 Pfam PF01588 Putative tRNA binding domain 547 640 2.2E-28 T 14-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 SUPERFAMILY SSF52374 3 347 9.65E-115 T 14-10-2018 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 SUPERFAMILY SSF47323 350 554 2.06E-43 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 PRINTS PR01041 Methionyl-tRNA synthetase signature 224 235 1.0E-33 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 PRINTS PR01041 Methionyl-tRNA synthetase signature 348 359 1.0E-33 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 PRINTS PR01041 Methionyl-tRNA synthetase signature 40 54 1.0E-33 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 PRINTS PR01041 Methionyl-tRNA synthetase signature 8 21 1.0E-33 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 PRINTS PR01041 Methionyl-tRNA synthetase signature 88 99 1.0E-33 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 PRINTS PR01041 Methionyl-tRNA synthetase signature 256 271 1.0E-33 T 14-10-2018 IPR033911 Methioninyl-tRNA synthetase core domain GO:0004825|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 Gene3D G3DSA:3.40.50.620 6 333 2.0E-153 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 TIGRFAM TIGR00399 metG_C_term: methionine--tRNA ligase, beta subunit 511 642 1.5E-42 T 14-10-2018 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal GO:0000166|GO:0004825|GO:0005524|GO:0005737|GO:0006431 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 Gene3D G3DSA:2.40.50.140 531 643 7.0E-37 T 14-10-2018 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 Hamap MF_01228 Methionine--tRNA ligase [metG]. 1 507 47.694 T 14-10-2018 IPR023457 Methionine-tRNA synthetase, type 2 GO:0004825 KEGG: 00450+6.1.1.10|KEGG: 00970+6.1.1.10 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 SUPERFAMILY SSF50249 536 642 4.41E-31 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 Pfam PF09334 tRNA synthetases class I (M) 6 361 4.3E-118 T 14-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 Pfam PF08264 Anticodon-binding domain of tRNA 382 474 8.6E-11 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 Gene3D G3DSA:1.10.730.10 337 522 2.2E-52 T 14-10-2018 Amico_0615 1c1f996ed61afefdd4ee7f9bbd1c1219 643 Gene3D G3DSA:2.170.220.10 117 226 2.0E-153 T 14-10-2018 Amico_0921 a276810f20d4307882428ea9e405b033 332 Gene3D G3DSA:3.30.1780.10 12 328 3.5E-82 T 14-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 Amico_0921 a276810f20d4307882428ea9e405b033 332 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 13 324 4.2E-51 T 14-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Amico_0921 a276810f20d4307882428ea9e405b033 332 PIRSF PIRSF001439 2 332 1.5E-59 T 14-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Amico_0921 a276810f20d4307882428ea9e405b033 332 SUPERFAMILY SSF51735 9 331 1.83E-68 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0921 a276810f20d4307882428ea9e405b033 332 Gene3D G3DSA:3.40.50.720 134 306 3.5E-82 T 14-10-2018 Amico_1600 994161ad884b7b3bfb3017d0c4a67890 436 SUPERFAMILY SSF51338 2 430 2.79E-25 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1600 994161ad884b7b3bfb3017d0c4a67890 436 Gene3D G3DSA:3.20.20.140 56 371 4.2E-126 T 14-10-2018 Amico_1600 994161ad884b7b3bfb3017d0c4a67890 436 ProSitePatterns PS00482 Dihydroorotase signature 1. 58 66 - T 14-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Amico_1600 994161ad884b7b3bfb3017d0c4a67890 436 Hamap MF_00220_B Dihydroorotase [pyrC]. 2 430 39.468 T 14-10-2018 IPR004722 Dihydroorotase GO:0004151|GO:0006221|GO:0046872 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Amico_1600 994161ad884b7b3bfb3017d0c4a67890 436 SUPERFAMILY SSF51556 55 365 2.54E-92 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_1600 994161ad884b7b3bfb3017d0c4a67890 436 Gene3D G3DSA:2.30.40.10 8 426 4.2E-126 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1600 994161ad884b7b3bfb3017d0c4a67890 436 Pfam PF01979 Amidohydrolase family 51 426 3.7E-25 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Amico_1600 994161ad884b7b3bfb3017d0c4a67890 436 TIGRFAM TIGR00857 pyrC_multi: dihydroorotase, multifunctional complex type 18 426 4.6E-115 T 14-10-2018 Amico_1377 3277570ec562f800d1c4903d272d6945 339 SUPERFAMILY SSF51395 17 322 3.51E-51 T 14-10-2018 Amico_1377 3277570ec562f800d1c4903d272d6945 339 Pfam PF01207 Dihydrouridine synthase (Dus) 19 245 1.2E-47 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Amico_1377 3277570ec562f800d1c4903d272d6945 339 PIRSF PIRSF006621 8 333 5.5E-53 T 14-10-2018 IPR001269 tRNA-dihydrouridine synthase GO:0008033|GO:0017150|GO:0050660|GO:0055114 Amico_1377 3277570ec562f800d1c4903d272d6945 339 Gene3D G3DSA:3.20.20.70 12 249 2.5E-56 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 SUPERFAMILY SSF55874 407 582 4.19E-34 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 SUPERFAMILY SSF55785 229 301 3.05E-8 T 14-10-2018 IPR035965 PAS domain superfamily Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 SMART SM00388 352 418 2.9E-17 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 Gene3D G3DSA:1.20.1480.50 146 240 5.3E-5 T 14-10-2018 Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 Gene3D G3DSA:1.10.287.130 345 418 2.2E-19 T 14-10-2018 Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 SMART SM00304 184 235 0.0074 T 14-10-2018 IPR003660 HAMP domain GO:0007165|GO:0016021 Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 Gene3D G3DSA:3.30.565.10 421 582 5.2E-32 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 Pfam PF13188 PAS domain 244 280 3.8E-5 T 14-10-2018 IPR000014 PAS domain Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 SMART SM00387 463 584 1.4E-29 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 SUPERFAMILY SSF47384 341 418 1.69E-17 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 Pfam PF16736 Single Cache-like 37 137 2.7E-6 T 14-10-2018 IPR031967 PhoR, single Cache-like domain Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 Gene3D G3DSA:3.30.450.20 244 320 2.9E-6 T 14-10-2018 Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 SMART SM00091 242 309 3.0E-5 T 14-10-2018 IPR000014 PAS domain Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 PRINTS PR00344 Bacterial sensor protein C-terminal signature 544 562 2.1E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 PRINTS PR00344 Bacterial sensor protein C-terminal signature 568 581 2.1E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 PRINTS PR00344 Bacterial sensor protein C-terminal signature 506 520 2.1E-11 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 464 583 3.8E-21 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_1684 98059e3e1de3f5f4e03a85bd2d59263e 587 Pfam PF00512 His Kinase A (phospho-acceptor) domain 352 417 4.6E-15 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Amico_0821 6f7c4134c758863ec11da7a768b41543 299 Gene3D G3DSA:3.30.465.10 93 216 7.3E-35 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Amico_0821 6f7c4134c758863ec11da7a768b41543 299 SUPERFAMILY SSF56194 205 297 1.12E-31 T 14-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_0821 6f7c4134c758863ec11da7a768b41543 299 Gene3D G3DSA:3.90.78.10 217 299 2.4E-31 T 14-10-2018 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_0821 6f7c4134c758863ec11da7a768b41543 299 Hamap MF_00037 UDP-N-acetylenolpyruvoylglucosamine reductase [murB]. 1 299 76.236 T 14-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_0821 6f7c4134c758863ec11da7a768b41543 299 Pfam PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain 202 297 6.7E-26 T 14-10-2018 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_0821 6f7c4134c758863ec11da7a768b41543 299 SUPERFAMILY SSF56176 21 211 2.47E-38 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Amico_0821 6f7c4134c758863ec11da7a768b41543 299 Gene3D G3DSA:3.30.43.10 5 84 1.7E-17 T 14-10-2018 IPR016167 FAD-binding, type PCMH, subdomain 1 Amico_0821 6f7c4134c758863ec11da7a768b41543 299 TIGRFAM TIGR00179 murB: UDP-N-acetylenolpyruvoylglucosamine reductase 23 297 1.4E-59 T 14-10-2018 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase GO:0008762|GO:0055114 KEGG: 00520+1.3.1.98|KEGG: 00550+1.3.1.98|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_0821 6f7c4134c758863ec11da7a768b41543 299 Pfam PF01565 FAD binding domain 36 166 6.4E-18 T 14-10-2018 IPR006094 FAD linked oxidase, N-terminal GO:0016491|GO:0050660|GO:0055114 Amico_0357 f570104ee6bfa4273b783c929197799e 456 Gene3D G3DSA:3.40.50.11390 203 361 3.3E-79 T 14-10-2018 Amico_0357 f570104ee6bfa4273b783c929197799e 456 Gene3D G3DSA:3.40.50.11400 87 202 3.3E-79 T 14-10-2018 Amico_0357 f570104ee6bfa4273b783c929197799e 456 Pfam PF12683 Protein of unknown function (DUF3798) 87 362 7.7E-130 T 14-10-2018 IPR024258 Protein of unknown function DUF3798 Amico_0357 f570104ee6bfa4273b783c929197799e 456 SUPERFAMILY SSF53822 152 311 4.37E-9 T 14-10-2018 IPR028082 Periplasmic binding protein-like I Amico_1822 cdff5c18d024adab53ed1a2030fbd01d 399 TIGRFAM TIGR00277 HDIG: HDIG domain 150 242 9.7E-9 T 14-10-2018 IPR006675 HDIG domain Amico_1822 cdff5c18d024adab53ed1a2030fbd01d 399 Gene3D G3DSA:1.10.3210.10 26 314 2.2E-64 T 14-10-2018 Amico_1822 cdff5c18d024adab53ed1a2030fbd01d 399 SMART SM00471 146 283 2.9E-12 T 14-10-2018 IPR003607 HD/PDEase domain Amico_1822 cdff5c18d024adab53ed1a2030fbd01d 399 Pfam PF01966 HD domain 151 273 4.0E-19 T 14-10-2018 IPR006674 HD domain Amico_1822 cdff5c18d024adab53ed1a2030fbd01d 399 SUPERFAMILY SSF109604 144 312 5.8E-32 T 14-10-2018 Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 Pfam PF00571 CBS domain 310 364 7.5E-13 T 14-10-2018 IPR000644 CBS domain Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 Pfam PF00571 CBS domain 372 425 3.9E-12 T 14-10-2018 IPR000644 CBS domain Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 SMART SM00116 317 364 8.8E-9 T 14-10-2018 IPR000644 CBS domain Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 SMART SM00116 379 426 1.6E-11 T 14-10-2018 IPR000644 CBS domain Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 SUPERFAMILY SSF54631 307 427 1.39E-33 T 14-10-2018 Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 Pfam PF01743 Poly A polymerase head domain 477 602 1.7E-29 T 14-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 SUPERFAMILY SSF81301 453 600 4.9E-33 T 14-10-2018 Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 SUPERFAMILY SSF81891 602 866 2.75E-39 T 14-10-2018 Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 Gene3D G3DSA:1.10.3090.10 599 865 6.5E-64 T 14-10-2018 Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 Pfam PF12627 Probable RNA and SrmB- binding site of polymerase A 628 689 3.0E-8 T 14-10-2018 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 Pfam PF01368 DHH family 3 145 2.6E-9 T 14-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 Gene3D G3DSA:3.30.460.10 443 598 2.1E-45 T 14-10-2018 Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 Gene3D G3DSA:3.10.580.10 300 432 1.6E-31 T 14-10-2018 Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 Gene3D G3DSA:3.10.310.30 206 299 1.6E-6 T 14-10-2018 Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 Gene3D G3DSA:3.90.1640.10 2 177 6.8E-31 T 14-10-2018 Amico_1177 a4410a6117762cfa7b19aefb1cbc2e15 877 SUPERFAMILY SSF64182 3 294 4.19E-48 T 14-10-2018 IPR038763 DHH phosphoesterase superfamily Amico_0800 2cbf2508ac2b218223da7041d978ce81 464 SUPERFAMILY SSF53335 75 459 4.66E-75 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0800 2cbf2508ac2b218223da7041d978ce81 464 Gene3D G3DSA:3.40.1350.30 136 295 9.7E-98 T 14-10-2018 Amico_0800 2cbf2508ac2b218223da7041d978ce81 464 ProSitePatterns PS01231 RNA methyltransferase trmA family signature 2. 443 453 - T 14-10-2018 IPR030391 RNA methyltransferase TrmA, conserved site Amico_0800 2cbf2508ac2b218223da7041d978ce81 464 Gene3D G3DSA:2.40.50.140 6 86 1.3E-23 T 14-10-2018 Amico_0800 2cbf2508ac2b218223da7041d978ce81 464 SUPERFAMILY SSF50249 10 66 1.83E-12 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0800 2cbf2508ac2b218223da7041d978ce81 464 Gene3D G3DSA:3.40.50.150 88 455 9.7E-98 T 14-10-2018 Amico_0800 2cbf2508ac2b218223da7041d978ce81 464 Pfam PF01938 TRAM domain 13 65 2.2E-7 T 14-10-2018 IPR002792 TRAM domain Amico_0800 2cbf2508ac2b218223da7041d978ce81 464 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 391 422 - T 14-10-2018 IPR030390 RNA methyltransferase TrmA, active site Amico_0800 2cbf2508ac2b218223da7041d978ce81 464 TIGRFAM TIGR00479 rumA: 23S rRNA (uracil-5-)-methyltransferase RumA 23 453 4.4E-113 T 14-10-2018 Amico_0800 2cbf2508ac2b218223da7041d978ce81 464 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 96 460 3.1E-25 T 14-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 Amico_0511 5ac56afaccf52fe2d7a2de95a9972612 220 SUPERFAMILY SSF48008 83 212 4.45E-16 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_0511 5ac56afaccf52fe2d7a2de95a9972612 220 Gene3D G3DSA:1.20.120.530 74 214 3.1E-18 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_0511 5ac56afaccf52fe2d7a2de95a9972612 220 Pfam PF07729 FCD domain 84 205 1.8E-14 T 14-10-2018 IPR011711 GntR, C-terminal Amico_0511 5ac56afaccf52fe2d7a2de95a9972612 220 SUPERFAMILY SSF46785 8 75 1.03E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0511 5ac56afaccf52fe2d7a2de95a9972612 220 Gene3D G3DSA:1.10.10.10 6 72 1.3E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0511 5ac56afaccf52fe2d7a2de95a9972612 220 SMART SM00345 13 71 2.9E-15 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0511 5ac56afaccf52fe2d7a2de95a9972612 220 Pfam PF00392 Bacterial regulatory proteins, gntR family 11 71 3.5E-17 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0511 5ac56afaccf52fe2d7a2de95a9972612 220 SMART SM00895 81 206 8.8E-8 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1598 2e74ce69daf549986a3ddba0fd7a3cf8 311 Gene3D G3DSA:3.20.20.70 15 295 2.7E-75 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_1598 2e74ce69daf549986a3ddba0fd7a3cf8 311 Gene3D G3DSA:2.30.26.10 57 219 2.7E-75 T 14-10-2018 IPR023359 Dihydroorotate dehydrogenase A, chain A, domain 2 Amico_1598 2e74ce69daf549986a3ddba0fd7a3cf8 311 Hamap MF_00224 Dihydroorotate dehydrogenase [pyrD]. 6 304 31.177 T 14-10-2018 IPR024920 Dihydroorotate dehydrogenase, class 1 GO:0004152|GO:0005737|GO:0006221 Amico_1598 2e74ce69daf549986a3ddba0fd7a3cf8 311 TIGRFAM TIGR01037 pyrD_sub1_fam: dihydroorotate dehydrogenase family protein 8 304 1.5E-82 T 14-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Amico_1598 2e74ce69daf549986a3ddba0fd7a3cf8 311 SUPERFAMILY SSF51395 3 304 1.65E-68 T 14-10-2018 Amico_1598 2e74ce69daf549986a3ddba0fd7a3cf8 311 ProSitePatterns PS00912 Dihydroorotate dehydrogenase signature 2. 242 262 - T 14-10-2018 IPR001295 Dihydroorotate dehydrogenase, conserved site GO:0004152|GO:0006207|GO:0055114 Reactome: R-HSA-500753 Amico_1598 2e74ce69daf549986a3ddba0fd7a3cf8 311 PIRSF PIRSF000164 2 306 2.1E-61 T 14-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Amico_1598 2e74ce69daf549986a3ddba0fd7a3cf8 311 Pfam PF01180 Dihydroorotate dehydrogenase 6 289 7.7E-48 T 14-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Amico_0698 4f0724555e5ee01e6dab066e710bbf98 367 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 250 357 1.8E-19 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_0698 4f0724555e5ee01e6dab066e710bbf98 367 PRINTS PR01780 Lantibiotic regulatory protein signature 287 303 1.1E-10 T 14-10-2018 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB GO:0000155|GO:0000160|GO:0004673|GO:0016020 Amico_0698 4f0724555e5ee01e6dab066e710bbf98 367 PRINTS PR01780 Lantibiotic regulatory protein signature 308 323 1.1E-10 T 14-10-2018 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB GO:0000155|GO:0000160|GO:0004673|GO:0016020 Amico_0698 4f0724555e5ee01e6dab066e710bbf98 367 PRINTS PR01780 Lantibiotic regulatory protein signature 144 160 1.1E-10 T 14-10-2018 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB GO:0000155|GO:0000160|GO:0004673|GO:0016020 Amico_0698 4f0724555e5ee01e6dab066e710bbf98 367 PRINTS PR01780 Lantibiotic regulatory protein signature 242 257 1.1E-10 T 14-10-2018 IPR008358 Signal transduction histidine kinase/phosphatase, lantibiotic regulatory protein MprB GO:0000155|GO:0000160|GO:0004673|GO:0016020 Amico_0698 4f0724555e5ee01e6dab066e710bbf98 367 SMART SM00387 246 358 1.0E-26 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_0698 4f0724555e5ee01e6dab066e710bbf98 367 Gene3D G3DSA:1.10.287.130 85 201 8.3E-19 T 14-10-2018 Amico_0698 4f0724555e5ee01e6dab066e710bbf98 367 SUPERFAMILY SSF47384 119 198 2.94E-16 T 14-10-2018 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily GO:0000155|GO:0007165 Amico_0698 4f0724555e5ee01e6dab066e710bbf98 367 SUPERFAMILY SSF55874 191 355 7.86E-32 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_0698 4f0724555e5ee01e6dab066e710bbf98 367 Gene3D G3DSA:3.30.565.10 211 364 8.7E-29 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_0698 4f0724555e5ee01e6dab066e710bbf98 367 SMART SM00388 135 201 1.5E-12 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Amico_0698 4f0724555e5ee01e6dab066e710bbf98 367 Pfam PF00512 His Kinase A (phospho-acceptor) domain 136 197 2.3E-11 T 14-10-2018 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain GO:0000155|GO:0007165 Amico_0202 7d304e95c1e0c4b86630dae9f991b146 528 SUPERFAMILY SSF51556 56 465 3.55E-75 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_0202 7d304e95c1e0c4b86630dae9f991b146 528 Gene3D G3DSA:3.20.20.140 392 465 4.6E-24 T 14-10-2018 Amico_0202 7d304e95c1e0c4b86630dae9f991b146 528 Gene3D G3DSA:3.20.20.140 55 305 5.2E-76 T 14-10-2018 Amico_0202 7d304e95c1e0c4b86630dae9f991b146 528 Pfam PF07969 Amidohydrolase family 44 508 5.5E-29 T 14-10-2018 IPR013108 Amidohydrolase 3 Amico_0202 7d304e95c1e0c4b86630dae9f991b146 528 Gene3D G3DSA:2.30.40.10 466 482 4.6E-24 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_0202 7d304e95c1e0c4b86630dae9f991b146 528 SUPERFAMILY SSF51338 2 511 6.92E-21 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_0202 7d304e95c1e0c4b86630dae9f991b146 528 Gene3D G3DSA:3.30.1490.130 342 391 4.6E-24 T 14-10-2018 IPR023100 D-aminoacylase, insert domain superfamily GO:0016811 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 SUPERFAMILY SSF51621 514 884 1.22E-118 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 Gene3D G3DSA:3.30.1490.20 15 247 1.4E-88 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 TIGRFAM TIGR01828 pyru_phos_dikin: pyruvate, phosphate dikinase 7 884 0.0 T 14-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 PIRSF PIRSF000853 6 887 0.0 T 14-10-2018 IPR010121 Pyruvate, phosphate dikinase GO:0006090|GO:0050242 KEGG: 00620+2.7.9.1|KEGG: 00710+2.7.9.1|KEGG: 00720+2.7.9.1|MetaCyc: PWY-241|MetaCyc: PWY-6549|MetaCyc: PWY-7115|MetaCyc: PWY-7117 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 SUPERFAMILY SSF56059 8 378 1.29E-129 T 14-10-2018 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 Gene3D G3DSA:1.20.80.30 115 202 1.4E-88 T 14-10-2018 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 305 361 4.9E-10 T 14-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 22 292 3.5E-39 T 14-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 Gene3D G3DSA:3.50.30.10 387 509 7.0E-68 T 14-10-2018 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 SUPERFAMILY SSF52009 394 513 2.88E-37 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 Gene3D G3DSA:1.10.189.10 349 531 7.0E-68 T 14-10-2018 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 521 882 4.2E-91 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 Gene3D G3DSA:3.30.470.20 248 345 1.6E-38 T 14-10-2018 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 Pfam PF00391 PEP-utilising enzyme, mobile domain 424 505 4.9E-29 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 452 463 - T 14-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Amico_0763 7c47668925d860c3e0da1de3639622c5 888 Gene3D G3DSA:3.20.20.60 534 884 9.3E-141 T 14-10-2018 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 Hamap MF_00054_B Elongation factor G [fusA]. 5 687 109.814 T 14-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 PRINTS PR00315 GTP-binding elongation factor signature 11 24 3.0E-16 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 PRINTS PR00315 GTP-binding elongation factor signature 129 138 3.0E-16 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 PRINTS PR00315 GTP-binding elongation factor signature 57 65 3.0E-16 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 PRINTS PR00315 GTP-binding elongation factor signature 77 87 3.0E-16 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 PRINTS PR00315 GTP-binding elongation factor signature 93 104 3.0E-16 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 Gene3D G3DSA:3.30.70.870 430 480 1.9E-26 T 14-10-2018 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 8 178 7.0E-31 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 TIGRFAM TIGR00484 EF-G: translation elongation factor G 3 686 0.0 T 14-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 Gene3D G3DSA:3.30.230.10 481 684 1.8E-92 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 SUPERFAMILY SSF54211 476 596 3.79E-44 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 SUPERFAMILY SSF50447 246 398 2.42E-34 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 Pfam PF00009 Elongation factor Tu GTP binding domain 7 279 5.5E-68 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 SUPERFAMILY SSF54980 401 478 6.47E-24 T 14-10-2018 IPR035647 EF-G domain III/V-like Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 SMART SM00838 597 684 9.5E-59 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 SUPERFAMILY SSF52540 5 279 7.72E-108 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 Pfam PF00679 Elongation factor G C-terminus 597 683 7.6E-32 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 Pfam PF14492 Elongation Factor G, domain II 401 474 5.6E-33 T 14-10-2018 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 50 65 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 Gene3D G3DSA:2.40.30.10 290 413 1.2E-47 T 14-10-2018 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 SUPERFAMILY SSF54980 600 686 5.28E-31 T 14-10-2018 IPR035647 EF-G domain III/V-like Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 Pfam PF03764 Elongation factor G, domain IV 476 595 6.2E-47 T 14-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 SMART SM00889 477 595 1.1E-69 T 14-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 Gene3D G3DSA:3.40.50.300 1 289 1.1E-111 T 14-10-2018 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 Gene3D G3DSA:3.30.70.240 601 671 1.8E-92 T 14-10-2018 Amico_0624 d29dc3f3a92ba145dbb065f2b5b4ab05 687 Pfam PF03144 Elongation factor Tu domain 2 321 388 2.9E-16 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Amico_1771 f42564485523fd671289755a0f7e3a10 331 Gene3D G3DSA:3.40.190.10 36 320 9.2E-79 T 14-10-2018 Amico_1771 f42564485523fd671289755a0f7e3a10 331 Gene3D G3DSA:3.40.190.10 118 255 9.2E-79 T 14-10-2018 Amico_1771 f42564485523fd671289755a0f7e3a10 331 SUPERFAMILY SSF53850 32 321 1.58E-52 T 14-10-2018 Amico_1771 f42564485523fd671289755a0f7e3a10 331 Pfam PF16868 NMT1-like family 36 320 3.9E-80 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_1771 f42564485523fd671289755a0f7e3a10 331 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 12 320 1.6E-59 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_1815 1855f22e0528a218ae2d52d9de3955da 545 SUPERFAMILY SSF103190 63 217 7.85E-32 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Amico_1815 1855f22e0528a218ae2d52d9de3955da 545 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 381 538 3.5E-40 T 14-10-2018 IPR000160 GGDEF domain Amico_1815 1855f22e0528a218ae2d52d9de3955da 545 SUPERFAMILY SSF103190 219 316 2.43E-15 T 14-10-2018 IPR029151 Periplasmic sensor-like domain superfamily Amico_1815 1855f22e0528a218ae2d52d9de3955da 545 Pfam PF00990 Diguanylate cyclase, GGDEF domain 384 537 1.8E-36 T 14-10-2018 IPR000160 GGDEF domain Amico_1815 1855f22e0528a218ae2d52d9de3955da 545 Gene3D G3DSA:3.30.70.270 378 543 2.3E-44 T 14-10-2018 Amico_1815 1855f22e0528a218ae2d52d9de3955da 545 Gene3D G3DSA:3.30.450.20 91 217 1.0E-25 T 14-10-2018 Amico_1815 1855f22e0528a218ae2d52d9de3955da 545 SUPERFAMILY SSF55073 389 538 7.38E-39 T 14-10-2018 IPR029787 Nucleotide cyclase Amico_1815 1855f22e0528a218ae2d52d9de3955da 545 Gene3D G3DSA:3.30.450.20 218 299 2.4E-7 T 14-10-2018 Amico_1815 1855f22e0528a218ae2d52d9de3955da 545 SMART SM00267 373 543 7.8E-38 T 14-10-2018 IPR000160 GGDEF domain Amico_0205 ba3cd2e6e08bead9e4cf29c85c5e752e 528 Gene3D G3DSA:3.20.20.140 56 288 1.7E-80 T 14-10-2018 Amico_0205 ba3cd2e6e08bead9e4cf29c85c5e752e 528 Gene3D G3DSA:3.20.20.140 394 467 3.4E-27 T 14-10-2018 Amico_0205 ba3cd2e6e08bead9e4cf29c85c5e752e 528 SUPERFAMILY SSF51556 57 467 2.61E-76 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_0205 ba3cd2e6e08bead9e4cf29c85c5e752e 528 Gene3D G3DSA:2.30.40.10 3 55 1.7E-80 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_0205 ba3cd2e6e08bead9e4cf29c85c5e752e 528 Gene3D G3DSA:2.30.40.10 468 481 3.4E-27 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_0205 ba3cd2e6e08bead9e4cf29c85c5e752e 528 Pfam PF07969 Amidohydrolase family 47 260 1.9E-18 T 14-10-2018 IPR013108 Amidohydrolase 3 Amico_0205 ba3cd2e6e08bead9e4cf29c85c5e752e 528 Pfam PF07969 Amidohydrolase family 420 512 3.3E-16 T 14-10-2018 IPR013108 Amidohydrolase 3 Amico_0205 ba3cd2e6e08bead9e4cf29c85c5e752e 528 Gene3D G3DSA:3.30.1490.130 342 393 3.4E-27 T 14-10-2018 IPR023100 D-aminoacylase, insert domain superfamily GO:0016811 Amico_0205 ba3cd2e6e08bead9e4cf29c85c5e752e 528 SUPERFAMILY SSF51338 1 518 1.94E-19 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_0024 c68b787ce6f6472759327dd17b03e84a 205 SUPERFAMILY SSF89550 2 196 2.62E-36 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Amico_0024 c68b787ce6f6472759327dd17b03e84a 205 Pfam PF02811 PHP domain 4 68 3.2E-7 T 14-10-2018 IPR004013 PHP domain GO:0003824 Amico_0024 c68b787ce6f6472759327dd17b03e84a 205 Pfam PF13263 PHP-associated 139 191 1.8E-14 T 14-10-2018 Amico_0024 c68b787ce6f6472759327dd17b03e84a 205 Gene3D G3DSA:3.20.20.140 1 190 8.0E-34 T 14-10-2018 Amico_0024 c68b787ce6f6472759327dd17b03e84a 205 SMART SM00481 3 70 1.0E-5 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Amico_0591 438ad08f2d25f6ed7ab77300ed24fcbf 134 Pfam PF02699 Preprotein translocase subunit 21 96 1.8E-28 T 14-10-2018 IPR003849 Preprotein translocase YajC Amico_0591 438ad08f2d25f6ed7ab77300ed24fcbf 134 PRINTS PR01853 Bacterial YajC preprotein translocase signature 57 75 1.2E-14 T 14-10-2018 IPR003849 Preprotein translocase YajC Amico_0591 438ad08f2d25f6ed7ab77300ed24fcbf 134 PRINTS PR01853 Bacterial YajC preprotein translocase signature 19 39 1.2E-14 T 14-10-2018 IPR003849 Preprotein translocase YajC Amico_0591 438ad08f2d25f6ed7ab77300ed24fcbf 134 SMART SM01323 17 99 9.7E-41 T 14-10-2018 IPR003849 Preprotein translocase YajC Amico_0591 438ad08f2d25f6ed7ab77300ed24fcbf 134 TIGRFAM TIGR00739 yajC: preprotein translocase, YajC subunit 19 98 5.5E-28 T 14-10-2018 IPR003849 Preprotein translocase YajC Amico_1762 e3cc5817d62e9f79388d1e326254d4f0 105 Gene3D G3DSA:2.60.120.10 1 104 4.1E-35 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Amico_1762 e3cc5817d62e9f79388d1e326254d4f0 105 Hamap MF_01537 Pyrimidine/purine nucleoside phosphorylase [ppnP]. 10 103 22.228 T 14-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 Amico_1762 e3cc5817d62e9f79388d1e326254d4f0 105 SUPERFAMILY SSF51182 12 102 7.53E-27 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Amico_1762 e3cc5817d62e9f79388d1e326254d4f0 105 Pfam PF06865 Protein of unknown function (DUF1255) 12 102 6.0E-30 T 14-10-2018 IPR009664 Pyrimidine/purine nucleoside phosphorylase KEGG: 00230+2.4.2.15|KEGG: 00240+2.4.2.4+2.4.2.3+2.4.2.2|KEGG: 00983+2.4.2.4+2.4.2.3|MetaCyc: PWY-5532|MetaCyc: PWY-7181 Amico_0140 afebd9f098272112bfa8758d9888d6e0 268 SUPERFAMILY SSF52151 46 255 9.16E-40 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Amico_0140 afebd9f098272112bfa8758d9888d6e0 268 Pfam PF01734 Patatin-like phospholipase 44 178 6.1E-17 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Amico_0140 afebd9f098272112bfa8758d9888d6e0 268 Gene3D G3DSA:3.40.1090.10 97 262 5.4E-20 T 14-10-2018 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 SMART SM00831 4 78 2.7E-15 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 450 468 1.3E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 555 571 1.3E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 583 599 1.3E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 615 640 1.3E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 Pfam PF00702 haloacid dehalogenase-like hydrolase 322 597 1.2E-22 T 14-10-2018 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 Pfam PF00689 Cation transporting ATPase, C-terminus 667 840 6.5E-42 T 14-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 327 333 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 Gene3D G3DSA:1.20.1110.10 40 742 7.5E-192 T 14-10-2018 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 Gene3D G3DSA:1.20.1110.10 748 842 4.2E-16 T 14-10-2018 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 Pfam PF00690 Cation transporter/ATPase, N-terminus 6 73 4.9E-18 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 163 177 8.5E-38 T 14-10-2018 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 502 512 8.5E-38 T 14-10-2018 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 325 339 8.5E-38 T 14-10-2018 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 607 619 8.5E-38 T 14-10-2018 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 480 491 8.5E-38 T 14-10-2018 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 583 602 8.5E-38 T 14-10-2018 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 Gene3D G3DSA:3.40.50.1000 322 623 7.5E-192 T 14-10-2018 IPR023214 HAD superfamily Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 SUPERFAMILY SSF81653 115 224 1.83E-30 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 552 672 1.3E-34 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 85 343 2.1E-43 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 364 527 1.5E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 Pfam PF00122 E1-E2 ATPase 113 304 1.6E-53 T 14-10-2018 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 SUPERFAMILY SSF81665 3 840 1.44E-121 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 Gene3D G3DSA:3.40.1110.10 335 487 7.5E-192 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 SUPERFAMILY SSF81660 332 484 9.48E-33 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 SUPERFAMILY SSF56784 323 688 7.62E-61 T 14-10-2018 IPR036412 HAD-like superfamily Amico_1044 90aa2ea6417fa138ab71d2636c432697 843 Gene3D G3DSA:2.70.150.10 5 227 7.5E-192 T 14-10-2018 Amico_1171 be5fadc326eaa07879eeab46a0b833b1 181 Gene3D G3DSA:3.40.50.7700 1 168 2.4E-64 T 14-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 Amico_1171 be5fadc326eaa07879eeab46a0b833b1 181 SMART SM01001 7 156 1.7E-79 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Amico_1171 be5fadc326eaa07879eeab46a0b833b1 181 TIGRFAM TIGR01162 purE: phosphoribosylaminoimidazole carboxylase, catalytic subunit 9 161 8.2E-56 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Amico_1171 be5fadc326eaa07879eeab46a0b833b1 181 PIRSF PIRSF001338 4 166 3.7E-62 T 14-10-2018 IPR024694 PurE, prokaryotic type GO:0006189 KEGG: 00230+5.4.99.18|MetaCyc: PWY-6123|MetaCyc: PWY-7234 Amico_1171 be5fadc326eaa07879eeab46a0b833b1 181 Hamap MF_01929 N5-carboxyaminoimidazole ribonucleotide mutase [purE]. 9 160 30.279 T 14-10-2018 IPR033747 Class I PurE Amico_1171 be5fadc326eaa07879eeab46a0b833b1 181 SUPERFAMILY SSF52255 8 163 4.84E-56 T 14-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 Amico_1171 be5fadc326eaa07879eeab46a0b833b1 181 Pfam PF00731 AIR carboxylase 8 154 6.1E-58 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Amico_1703 f22b6ac3996c5986f901dc2638288f4d 167 Gene3D G3DSA:3.20.19.10 1 158 1.1E-53 T 14-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Amico_1703 f22b6ac3996c5986f901dc2638288f4d 167 Pfam PF00694 Aconitase C-terminal domain 49 99 1.9E-17 T 14-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Amico_1703 f22b6ac3996c5986f901dc2638288f4d 167 SUPERFAMILY SSF52016 1 159 3.14E-48 T 14-10-2018 Amico_1703 f22b6ac3996c5986f901dc2638288f4d 167 Hamap MF_01032 Methanogen homoaconitase small subunit [hacB]. 2 160 34.634 T 14-10-2018 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0016836 KEGG: 00290+4.2.1.33 Amico_1703 f22b6ac3996c5986f901dc2638288f4d 167 TIGRFAM TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit 4 157 8.4E-58 T 14-10-2018 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0016836 KEGG: 00290+4.2.1.33 Amico_0846 05b8b7d9063d3f009647b5d167b366d8 103 Pfam PF00829 Ribosomal prokaryotic L21 protein 1 101 1.6E-42 T 14-10-2018 IPR028909 Ribosomal protein L21-like GO:0005840 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0846 05b8b7d9063d3f009647b5d167b366d8 103 SUPERFAMILY SSF141091 1 102 3.4E-39 T 14-10-2018 IPR036164 L21-like superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0846 05b8b7d9063d3f009647b5d167b366d8 103 ProSitePatterns PS01169 Ribosomal protein L21 signature. 72 94 - T 14-10-2018 IPR018258 Ribosomal protein L21, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0846 05b8b7d9063d3f009647b5d167b366d8 103 Hamap MF_01363 50S ribosomal protein L21 [rplU]. 1 103 27.823 T 14-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0846 05b8b7d9063d3f009647b5d167b366d8 103 TIGRFAM TIGR00061 L21: ribosomal protein bL21 2 101 5.5E-38 T 14-10-2018 IPR001787 Ribosomal protein L21 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1658 135e4baeeef3516b4e2afc9241d058be 328 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 233 320 1.4E-27 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Amico_1658 135e4baeeef3516b4e2afc9241d058be 328 SMART SM00382 40 233 1.1E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1658 135e4baeeef3516b4e2afc9241d058be 328 Pfam PF00005 ABC transporter 32 183 8.3E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1658 135e4baeeef3516b4e2afc9241d058be 328 SUPERFAMILY SSF52540 11 255 4.78E-70 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1658 135e4baeeef3516b4e2afc9241d058be 328 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 235 300 6.4E-16 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Amico_1658 135e4baeeef3516b4e2afc9241d058be 328 Gene3D G3DSA:3.40.50.300 9 328 2.4E-94 T 14-10-2018 Amico_0661 e2080ef3ced0d0d4bfa2f3966d4b8d81 271 Gene3D G3DSA:3.30.70.660 106 244 6.7E-42 T 14-10-2018 IPR020095 Pseudouridine synthase I, TruA, C-terminal GO:0003723|GO:0009982 Amico_0661 e2080ef3ced0d0d4bfa2f3966d4b8d81 271 PIRSF PIRSF001430 1 260 6.1E-72 T 14-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0661 e2080ef3ced0d0d4bfa2f3966d4b8d81 271 TIGRFAM TIGR00071 hisT_truA: tRNA pseudouridine(38-40) synthase 4 239 2.0E-54 T 14-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0661 e2080ef3ced0d0d4bfa2f3966d4b8d81 271 Hamap MF_00171 tRNA pseudouridine synthase A [truA]. 1 245 32.038 T 14-10-2018 IPR001406 Pseudouridine synthase I, TruA GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0661 e2080ef3ced0d0d4bfa2f3966d4b8d81 271 Pfam PF01416 tRNA pseudouridine synthase 142 246 9.1E-29 T 14-10-2018 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0661 e2080ef3ced0d0d4bfa2f3966d4b8d81 271 SUPERFAMILY SSF55120 1 251 1.06E-81 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0661 e2080ef3ced0d0d4bfa2f3966d4b8d81 271 Gene3D G3DSA:3.30.70.580 1 104 2.2E-30 T 14-10-2018 Amico_0368 f45a0220a2f3ab9992d7bde06a8782c0 403 Gene3D G3DSA:3.90.1150.10 14 384 3.6E-142 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0368 f45a0220a2f3ab9992d7bde06a8782c0 403 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 232 245 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Amico_0368 f45a0220a2f3ab9992d7bde06a8782c0 403 Pfam PF00155 Aminotransferase class I and II 31 344 5.0E-53 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_0368 f45a0220a2f3ab9992d7bde06a8782c0 403 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 90 110 4.8E-11 T 14-10-2018 Amico_0368 f45a0220a2f3ab9992d7bde06a8782c0 403 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 112 133 4.8E-11 T 14-10-2018 Amico_0368 f45a0220a2f3ab9992d7bde06a8782c0 403 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 160 184 4.8E-11 T 14-10-2018 Amico_0368 f45a0220a2f3ab9992d7bde06a8782c0 403 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 196 219 4.8E-11 T 14-10-2018 Amico_0368 f45a0220a2f3ab9992d7bde06a8782c0 403 Gene3D G3DSA:3.40.640.10 44 281 3.6E-142 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0368 f45a0220a2f3ab9992d7bde06a8782c0 403 SUPERFAMILY SSF53383 1 391 4.74E-100 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 SUPERFAMILY SSF55424 352 471 2.02E-10 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 Gene3D G3DSA:3.50.50.60 122 265 1.2E-65 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 3.7E-15 T 14-10-2018 Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 178 203 3.7E-15 T 14-10-2018 Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 298 305 3.7E-15 T 14-10-2018 Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 259 273 3.7E-15 T 14-10-2018 Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 Gene3D G3DSA:3.30.390.30 350 473 1.0E-8 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 Gene3D G3DSA:3.50.50.60 8 337 1.2E-65 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 6 305 6.0E-45 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 SUPERFAMILY SSF51905 3 338 2.01E-35 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 8 27 5.8E-17 T 14-10-2018 Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 178 196 5.8E-17 T 14-10-2018 Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 283 305 5.8E-17 T 14-10-2018 Amico_1237 62500ccbf4feb75bf782d8379d53bf84 477 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 258 274 5.8E-17 T 14-10-2018 Amico_0518 f8376fa29da2dde967337b4906ce024a 400 SUPERFAMILY SSF53383 5 396 2.02E-111 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0518 f8376fa29da2dde967337b4906ce024a 400 Gene3D G3DSA:3.90.1150.10 28 392 1.4E-128 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0518 f8376fa29da2dde967337b4906ce024a 400 Pfam PF00155 Aminotransferase class I and II 34 392 6.1E-65 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_0518 f8376fa29da2dde967337b4906ce024a 400 Gene3D G3DSA:3.40.640.10 65 287 1.4E-128 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0518 f8376fa29da2dde967337b4906ce024a 400 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 237 250 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Amico_0318 2c28b26b93320fc945d479f0eebb96f6 126 Gene3D G3DSA:1.20.5.710 1 55 3.3E-23 T 14-10-2018 Amico_0318 2c28b26b93320fc945d479f0eebb96f6 126 TIGRFAM TIGR00855 L12: ribosomal protein bL12 2 126 1.5E-48 T 14-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0318 2c28b26b93320fc945d479f0eebb96f6 126 Gene3D G3DSA:3.30.1390.10 56 126 2.3E-32 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Amico_0318 2c28b26b93320fc945d479f0eebb96f6 126 Pfam PF16320 Ribosomal protein L7/L12 dimerisation domain 2 50 1.6E-20 T 14-10-2018 IPR008932 Ribosomal protein L7/L12, oligomerisation GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0318 2c28b26b93320fc945d479f0eebb96f6 126 SUPERFAMILY SSF54736 55 126 2.62E-25 T 14-10-2018 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like Amico_0318 2c28b26b93320fc945d479f0eebb96f6 126 Hamap MF_00368 50S ribosomal protein L7/L12 [rplL]. 1 126 25.356 T 14-10-2018 IPR000206 Ribosomal protein L7/L12 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0318 2c28b26b93320fc945d479f0eebb96f6 126 Pfam PF00542 Ribosomal protein L7/L12 C-terminal domain 60 126 5.6E-31 T 14-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0318 2c28b26b93320fc945d479f0eebb96f6 126 ProDom PD001326 RIBOSOMAL L7/L12 50S RIBONUCLEOPROTEIN CHLOROPLAST L12 PLASTID DIRECT SEQUENCING PEPTIDE 61 126 2.0E-22 T 14-10-2018 IPR013823 Ribosomal protein L7/L12, C-terminal GO:0003735|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0318 2c28b26b93320fc945d479f0eebb96f6 126 SUPERFAMILY SSF48300 2 62 1.44E-16 T 14-10-2018 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1454 87615819b7310e1f75ec3a17b2231040 428 TIGRFAM TIGR00184 purA: adenylosuccinate synthase 7 425 2.6E-164 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Amico_1454 87615819b7310e1f75ec3a17b2231040 428 ProSitePatterns PS00513 Adenylosuccinate synthetase active site. 134 145 - T 14-10-2018 IPR033128 Adenylosuccinate synthase, active site KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Amico_1454 87615819b7310e1f75ec3a17b2231040 428 ProSitePatterns PS01266 Adenylosuccinate synthetase GTP-binding site. 12 19 - T 14-10-2018 IPR018220 Adenylosuccinate synthase, GTP-binding site GO:0005525 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Amico_1454 87615819b7310e1f75ec3a17b2231040 428 Gene3D G3DSA:3.90.170.10 268 427 2.1E-72 T 14-10-2018 Amico_1454 87615819b7310e1f75ec3a17b2231040 428 Hamap MF_00011 Adenylosuccinate synthetase [purA]. 1 428 190.086 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Amico_1454 87615819b7310e1f75ec3a17b2231040 428 SMART SM00788 5 425 3.4E-263 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Amico_1454 87615819b7310e1f75ec3a17b2231040 428 SUPERFAMILY SSF52540 5 426 2.87E-166 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1454 87615819b7310e1f75ec3a17b2231040 428 Gene3D G3DSA:1.10.300.10 102 202 1.2E-95 T 14-10-2018 Amico_1454 87615819b7310e1f75ec3a17b2231040 428 Gene3D G3DSA:3.40.440.10 8 257 1.2E-95 T 14-10-2018 Amico_1454 87615819b7310e1f75ec3a17b2231040 428 Pfam PF00709 Adenylosuccinate synthetase 7 424 3.6E-179 T 14-10-2018 IPR001114 Adenylosuccinate synthetase GO:0004019|GO:0005525|GO:0006164 KEGG: 00230+6.3.4.4|KEGG: 00250+6.3.4.4|MetaCyc: PWY-7219|Reactome: R-HSA-73817 Amico_0153 93ca43c957c3c5ace0df8b68f517d03a 551 SUPERFAMILY SSF53187 7 528 6.56E-25 T 14-10-2018 Amico_0153 93ca43c957c3c5ace0df8b68f517d03a 551 Gene3D G3DSA:3.40.630.10 7 231 3.8E-30 T 14-10-2018 Amico_0153 93ca43c957c3c5ace0df8b68f517d03a 551 Pfam PF01546 Peptidase family M20/M25/M40 85 340 7.2E-13 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_0153 93ca43c957c3c5ace0df8b68f517d03a 551 PIRSF PIRSF010386 1 548 4.7E-147 T 14-10-2018 IPR012166 Uncharacterised protein family RocB Amico_1577 b934aa263cbaa2f3a1578d412d6debf5 336 SUPERFAMILY SSF53850 29 329 2.26E-72 T 14-10-2018 Amico_1577 b934aa263cbaa2f3a1578d412d6debf5 336 PIRSF PIRSF002825 1 333 9.6E-71 T 14-10-2018 IPR026045 Ferric binding protein Amico_1577 b934aa263cbaa2f3a1578d412d6debf5 336 Gene3D G3DSA:3.40.190.10 130 317 3.2E-95 T 14-10-2018 Amico_1577 b934aa263cbaa2f3a1578d412d6debf5 336 Pfam PF13343 Bacterial extracellular solute-binding protein 93 315 8.9E-30 T 14-10-2018 Amico_1577 b934aa263cbaa2f3a1578d412d6debf5 336 Gene3D G3DSA:3.40.190.10 32 302 3.2E-95 T 14-10-2018 Amico_0552 b41397e7bf9907153bfc235d58ad279c 91 Hamap MF_00385 30S ribosomal protein S16 [rpsP]. 2 77 24.7 T 14-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0552 b41397e7bf9907153bfc235d58ad279c 91 ProSitePatterns PS00732 Ribosomal protein S16 signature. 3 12 - T 14-10-2018 IPR020592 Ribosomal protein S16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0552 b41397e7bf9907153bfc235d58ad279c 91 TIGRFAM TIGR00002 S16: ribosomal protein bS16 3 80 2.2E-33 T 14-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0552 b41397e7bf9907153bfc235d58ad279c 91 Pfam PF00886 Ribosomal protein S16 9 67 3.5E-26 T 14-10-2018 IPR000307 Ribosomal protein S16 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0552 b41397e7bf9907153bfc235d58ad279c 91 Gene3D G3DSA:3.30.1320.10 1 91 5.6E-36 T 14-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0552 b41397e7bf9907153bfc235d58ad279c 91 SUPERFAMILY SSF54565 2 84 1.31E-34 T 14-10-2018 IPR023803 Ribosomal protein S16 domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1061 f839d036552228f8f40413687f60be97 412 SUPERFAMILY SSF53901 213 410 6.26E-74 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_1061 f839d036552228f8f40413687f60be97 412 SMART SM00825 Beta-ketoacyl synthase 4 412 2.1E-16 T 14-10-2018 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain Amico_1061 f839d036552228f8f40413687f60be97 412 Pfam PF00109 Beta-ketoacyl synthase, N-terminal domain 2 245 4.6E-60 T 14-10-2018 IPR014030 Beta-ketoacyl synthase, N-terminal Amico_1061 f839d036552228f8f40413687f60be97 412 ProSitePatterns PS00606 Beta-ketoacyl synthases active site. 153 169 - T 14-10-2018 IPR018201 Beta-ketoacyl synthase, active site Amico_1061 f839d036552228f8f40413687f60be97 412 SUPERFAMILY SSF53901 2 250 2.97E-81 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_1061 f839d036552228f8f40413687f60be97 412 Gene3D G3DSA:3.40.47.10 255 399 2.2E-52 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_1061 f839d036552228f8f40413687f60be97 412 TIGRFAM TIGR03150 fabF: beta-ketoacyl-acyl-carrier-protein synthase II 2 407 8.1E-186 T 14-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Amico_1061 f839d036552228f8f40413687f60be97 412 Pfam PF02801 Beta-ketoacyl synthase, C-terminal domain 253 367 1.4E-38 T 14-10-2018 IPR014031 Beta-ketoacyl synthase, C-terminal Amico_1061 f839d036552228f8f40413687f60be97 412 PIRSF PIRSF000447 1 412 8.1E-177 T 14-10-2018 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 GO:0006633|GO:0016747 Amico_1061 f839d036552228f8f40413687f60be97 412 Gene3D G3DSA:3.40.47.10 1 254 1.9E-96 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_0849 7923d20b9e9eb6826375cae729ab83d7 271 SMART SM00363 7 72 1.5E-6 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0849 7923d20b9e9eb6826375cae729ab83d7 271 TIGRFAM TIGR00478 tly: TlyA family rRNA methyltransferase/putative hemolysin 8 240 1.5E-71 T 14-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 Amico_0849 7923d20b9e9eb6826375cae729ab83d7 271 Gene3D G3DSA:3.40.50.150 66 271 1.8E-79 T 14-10-2018 Amico_0849 7923d20b9e9eb6826375cae729ab83d7 271 Pfam PF01728 FtsJ-like methyltransferase 63 242 1.2E-20 T 14-10-2018 IPR002877 Ribosomal RNA methyltransferase FtsJ domain GO:0008168|GO:0032259 Amico_0849 7923d20b9e9eb6826375cae729ab83d7 271 SUPERFAMILY SSF53335 60 247 2.12E-26 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0849 7923d20b9e9eb6826375cae729ab83d7 271 SUPERFAMILY SSF55174 5 71 5.59E-8 T 14-10-2018 Amico_0849 7923d20b9e9eb6826375cae729ab83d7 271 Pfam PF01479 S4 domain 7 48 2.2E-5 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0849 7923d20b9e9eb6826375cae729ab83d7 271 Gene3D G3DSA:3.10.290.10 2 65 1.3E-19 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Amico_0849 7923d20b9e9eb6826375cae729ab83d7 271 PIRSF PIRSF005578 2 266 5.9E-102 T 14-10-2018 IPR004538 Haemolysin A /rRNA methyltransferase TlyA GO:0003723 Amico_0866 4f243ec1d4ac423ccb70a736e6936d55 174 ProSitePatterns PS01321 Crossover junction endodeoxyribonuclease ruvC signature. 119 154 - T 14-10-2018 IPR020563 Crossover junction endodeoxyribonuclease RuvC, magnesium-binding site GO:0008821 Amico_0866 4f243ec1d4ac423ccb70a736e6936d55 174 SUPERFAMILY SSF53098 9 160 6.45E-42 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Amico_0866 4f243ec1d4ac423ccb70a736e6936d55 174 Gene3D G3DSA:3.30.420.10 9 163 1.1E-45 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Amico_0866 4f243ec1d4ac423ccb70a736e6936d55 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 145 157 1.4E-32 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Amico_0866 4f243ec1d4ac423ccb70a736e6936d55 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 10 23 1.4E-32 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Amico_0866 4f243ec1d4ac423ccb70a736e6936d55 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 67 83 1.4E-32 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Amico_0866 4f243ec1d4ac423ccb70a736e6936d55 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 113 132 1.4E-32 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Amico_0866 4f243ec1d4ac423ccb70a736e6936d55 174 PRINTS PR00696 Crossover junction endodeoxyribonuclease RUVC signature 89 105 1.4E-32 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Amico_0866 4f243ec1d4ac423ccb70a736e6936d55 174 TIGRFAM TIGR00228 ruvC: crossover junction endodeoxyribonuclease RuvC 10 157 2.4E-32 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Amico_0866 4f243ec1d4ac423ccb70a736e6936d55 174 Hamap MF_00034 Crossover junction endodeoxyribonuclease RuvC [ruvC]. 7 160 39.896 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Amico_0866 4f243ec1d4ac423ccb70a736e6936d55 174 Pfam PF02075 Crossover junction endodeoxyribonuclease RuvC 10 156 1.4E-41 T 14-10-2018 IPR002176 Crossover junction endodeoxyribonuclease RuvC GO:0004520|GO:0006281|GO:0006310 Amico_0073 683826fb8b4103a85fe1420b38a0b088 396 Gene3D G3DSA:3.90.1150.10 16 389 7.5E-135 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0073 683826fb8b4103a85fe1420b38a0b088 396 Pfam PF00155 Aminotransferase class I and II 58 380 4.6E-31 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_0073 683826fb8b4103a85fe1420b38a0b088 396 Gene3D G3DSA:3.40.640.10 65 286 7.5E-135 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0073 683826fb8b4103a85fe1420b38a0b088 396 SUPERFAMILY SSF53383 4 394 3.06E-105 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 SMART SM00387 545 644 3.0E-5 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 Pfam PF00989 PAS fold 57 158 1.2E-6 T 14-10-2018 IPR013767 PAS fold GO:0006355 Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 548 643 5.5E-8 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 SUPERFAMILY SSF55785 158 285 4.35E-15 T 14-10-2018 IPR035965 PAS domain superfamily Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 SMART SM00086 249 289 15.0 T 14-10-2018 IPR001610 PAC motif Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 SMART SM00086 372 414 0.71 T 14-10-2018 IPR001610 PAC motif Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 SMART SM00086 118 161 27.0 T 14-10-2018 IPR001610 PAC motif Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 Gene3D G3DSA:3.30.450.20 54 166 2.7E-12 T 14-10-2018 Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 Pfam PF13426 PAS domain 311 413 1.8E-14 T 14-10-2018 IPR000014 PAS domain Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 SUPERFAMILY SSF55785 57 169 1.24E-12 T 14-10-2018 IPR035965 PAS domain superfamily Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 SUPERFAMILY SSF55785 287 412 2.58E-22 T 14-10-2018 IPR035965 PAS domain superfamily Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 Gene3D G3DSA:3.30.565.10 505 648 2.1E-22 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 SMART SM00091 42 108 5.8E-4 T 14-10-2018 IPR000014 PAS domain Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 SMART SM00091 301 367 0.001 T 14-10-2018 IPR000014 PAS domain Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 SMART SM00091 173 247 0.036 T 14-10-2018 IPR000014 PAS domain Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 Gene3D G3DSA:3.30.450.20 299 430 1.0E-21 T 14-10-2018 Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 Gene3D G3DSA:3.30.450.20 167 287 8.9E-21 T 14-10-2018 Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 Pfam PF13188 PAS domain 176 223 4.8E-7 T 14-10-2018 IPR000014 PAS domain Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 Pfam PF07730 Histidine kinase 442 506 2.5E-14 T 14-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 176 295 3.2E-10 T 14-10-2018 IPR000014 PAS domain Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 300 421 2.1E-19 T 14-10-2018 IPR000014 PAS domain Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 43 168 3.1E-9 T 14-10-2018 IPR000014 PAS domain Amico_1871 b07e9d4d6653328f2090dac7cbe5e9d2 661 SUPERFAMILY SSF55874 516 641 3.41E-15 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1215 7c3b65508e702d0ee6c251496fb56325 452 SUPERFAMILY SSF53383 14 441 1.15E-112 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1215 7c3b65508e702d0ee6c251496fb56325 452 PIRSF PIRSF000521 17 405 4.2E-35 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Amico_1215 7c3b65508e702d0ee6c251496fb56325 452 ProSitePatterns PS00600 Aminotransferases class-III pyridoxal-phosphate attachment site. 244 281 - T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Amico_1215 7c3b65508e702d0ee6c251496fb56325 452 Gene3D G3DSA:3.90.1150.10 23 441 1.5E-137 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1215 7c3b65508e702d0ee6c251496fb56325 452 Gene3D G3DSA:3.40.640.10 54 333 1.5E-137 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1215 7c3b65508e702d0ee6c251496fb56325 452 Pfam PF00202 Aminotransferase class-III 13 437 4.3E-93 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Amico_0969 ffeac1780bdc75092569fc58ef10424e 329 Pfam PF01368 DHH family 23 167 1.2E-9 T 14-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Amico_0969 ffeac1780bdc75092569fc58ef10424e 329 SUPERFAMILY SSF64182 21 310 1.83E-54 T 14-10-2018 IPR038763 DHH phosphoesterase superfamily Amico_0969 ffeac1780bdc75092569fc58ef10424e 329 Gene3D G3DSA:3.90.1640.10 2 207 3.4E-49 T 14-10-2018 Amico_0969 ffeac1780bdc75092569fc58ef10424e 329 Pfam PF02272 DHHA1 domain 247 320 6.4E-12 T 14-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Amico_0969 ffeac1780bdc75092569fc58ef10424e 329 Gene3D G3DSA:3.10.310.30 210 329 3.6E-32 T 14-10-2018 Amico_1169 0d7f566e98b5eb796d0855644d6abf5a 509 Gene3D G3DSA:3.40.140.20 207 358 2.4E-47 T 14-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1169 0d7f566e98b5eb796d0855644d6abf5a 509 SUPERFAMILY SSF53927 210 509 1.4E-94 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Amico_1169 0d7f566e98b5eb796d0855644d6abf5a 509 Pfam PF01808 AICARFT/IMPCHase bienzyme 136 442 1.1E-88 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1169 0d7f566e98b5eb796d0855644d6abf5a 509 Gene3D G3DSA:3.40.140.20 390 509 2.8E-44 T 14-10-2018 IPR024051 AICAR transformylase, duplicated domain superfamily KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1169 0d7f566e98b5eb796d0855644d6abf5a 509 Gene3D G3DSA:3.40.50.1380 1 198 1.5E-79 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Amico_1169 0d7f566e98b5eb796d0855644d6abf5a 509 SUPERFAMILY SSF52335 4 194 2.04E-62 T 14-10-2018 IPR036914 Methylglyoxal synthase-like domain superfamily Amico_1169 0d7f566e98b5eb796d0855644d6abf5a 509 SMART SM00851 16 130 1.7E-44 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain Amico_1169 0d7f566e98b5eb796d0855644d6abf5a 509 PIRSF PIRSF000414 1 509 1.0E-173 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1169 0d7f566e98b5eb796d0855644d6abf5a 509 SMART SM00798 135 444 7.2E-106 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1169 0d7f566e98b5eb796d0855644d6abf5a 509 Hamap MF_00139 Bifunctional purine biosynthesis protein PurH [purH]. 4 509 37.173 T 14-10-2018 IPR002695 Bifunctional purine biosynthesis protein PurH-like GO:0003937|GO:0004643|GO:0006164 KEGG: 00230+3.5.4.10+2.1.2.3|KEGG: 00670+2.1.2.3|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1169 0d7f566e98b5eb796d0855644d6abf5a 509 Pfam PF02142 MGS-like domain 17 130 2.2E-23 T 14-10-2018 IPR011607 Methylglyoxal synthase-like domain Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 Pfam PF00591 Glycosyl transferase family, a/b domain 78 306 6.1E-36 T 14-10-2018 IPR000312 Glycosyl transferase, family 3 GO:0016757 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 SUPERFAMILY SSF52418 78 328 7.85E-81 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 ProSitePatterns PS00647 Thymidine and pyrimidine-nucleoside phosphorylases signature. 110 125 - T 14-10-2018 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 Gene3D G3DSA:1.20.970.10 3 68 6.1E-18 T 14-10-2018 Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 PIRSF PIRSF000478 1 435 1.3E-141 T 14-10-2018 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase GO:0004645|GO:0006206 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 TIGRFAM TIGR02644 Y_phosphoryl: pyrimidine-nucleoside phosphorylase 6 416 7.0E-144 T 14-10-2018 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic GO:0006213|GO:0016154 KEGG: 00240+2.4.2.4|KEGG: 00983+2.4.2.4|MetaCyc: PWY-7181|Reactome: R-HSA-73614|Reactome: R-HSA-73621 Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 Pfam PF02885 Glycosyl transferase family, helical bundle domain 7 67 1.1E-12 T 14-10-2018 IPR017459 Glycosyl transferase family 3, N-terminal domain Reactome: R-HSA-73614|Reactome: R-HSA-73621 Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 SUPERFAMILY SSF54680 333 434 1.44E-22 T 14-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 SMART SM00941 346 420 6.4E-19 T 14-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 Pfam PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain 346 418 3.0E-17 T 14-10-2018 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 Gene3D G3DSA:3.40.1030.10 79 331 8.7E-134 T 14-10-2018 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 SUPERFAMILY SSF47648 1 70 4.06E-14 T 14-10-2018 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily Reactome: R-HSA-73614|Reactome: R-HSA-73621 Amico_1012 0269ce5ff5a1133206dd00352aaefb45 436 Gene3D G3DSA:3.90.1170.30 332 420 8.7E-134 T 14-10-2018 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily GO:0006213|GO:0016763 Reactome: R-HSA-73614|Reactome: R-HSA-73621 Amico_1464 24e67bc73f7ef4346f38c5cf2058576e 201 Gene3D G3DSA:3.90.950.10 5 191 1.3E-66 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Amico_1464 24e67bc73f7ef4346f38c5cf2058576e 201 SUPERFAMILY SSF52972 6 185 1.5E-61 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Amico_1464 24e67bc73f7ef4346f38c5cf2058576e 201 PIRSF PIRSF006305 3 194 1.5E-61 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 Amico_1464 24e67bc73f7ef4346f38c5cf2058576e 201 Hamap MF_00528 Septum formation protein Maf [maf]. 7 192 32.336 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 Amico_1464 24e67bc73f7ef4346f38c5cf2058576e 201 Pfam PF02545 Maf-like protein 7 187 3.0E-55 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 Amico_1464 24e67bc73f7ef4346f38c5cf2058576e 201 TIGRFAM TIGR00172 maf: septum formation protein Maf 6 181 1.5E-56 T 14-10-2018 IPR003697 Maf-like protein GO:0047429 Amico_1644 9925e2b191b1bc6dbb41a917a4b9e2db 1173 Gene3D G3DSA:3.40.50.300 734 886 9.6E-22 T 14-10-2018 Amico_1644 9925e2b191b1bc6dbb41a917a4b9e2db 1173 SUPERFAMILY SSF52540 18 867 1.43E-95 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1644 9925e2b191b1bc6dbb41a917a4b9e2db 1173 Pfam PF12705 PD-(D/E)XK nuclease superfamily 925 1168 1.6E-20 T 14-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type Amico_1644 9925e2b191b1bc6dbb41a917a4b9e2db 1173 Gene3D G3DSA:3.90.320.10 940 1120 1.2E-5 T 14-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal Amico_1644 9925e2b191b1bc6dbb41a917a4b9e2db 1173 Gene3D G3DSA:3.40.50.300 356 483 4.3E-32 T 14-10-2018 Amico_1644 9925e2b191b1bc6dbb41a917a4b9e2db 1173 Gene3D G3DSA:3.40.50.300 541 646 3.1E-13 T 14-10-2018 Amico_1644 9925e2b191b1bc6dbb41a917a4b9e2db 1173 Pfam PF13361 UvrD-like helicase C-terminal domain 549 857 5.6E-17 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Amico_1644 9925e2b191b1bc6dbb41a917a4b9e2db 1173 SUPERFAMILY SSF52980 929 1108 2.14E-8 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Amico_1644 9925e2b191b1bc6dbb41a917a4b9e2db 1173 Gene3D G3DSA:3.40.50.300 10 180 9.4E-28 T 14-10-2018 Amico_1644 9925e2b191b1bc6dbb41a917a4b9e2db 1173 Pfam PF00580 UvrD/REP helicase N-terminal domain 20 452 1.9E-52 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Amico_0648 b19afb36915a6d51f48191bf4ac8ac3e 218 Pfam PF05191 Adenylate kinase, active site lid 127 162 6.2E-14 T 14-10-2018 IPR007862 Adenylate kinase, active site lid domain GO:0004017 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 Amico_0648 b19afb36915a6d51f48191bf4ac8ac3e 218 Hamap MF_00235 Adenylate kinase [adk]. 1 213 48.828 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Amico_0648 b19afb36915a6d51f48191bf4ac8ac3e 218 Pfam PF00406 Adenylate kinase 5 190 4.8E-59 T 14-10-2018 Amico_0648 b19afb36915a6d51f48191bf4ac8ac3e 218 ProSitePatterns PS00113 Adenylate kinase signature. 81 92 - T 14-10-2018 IPR033690 Adenylate kinase, conserved site KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Amico_0648 b19afb36915a6d51f48191bf4ac8ac3e 218 TIGRFAM TIGR01351 adk: adenylate kinase 2 212 9.8E-82 T 14-10-2018 IPR006259 Adenylate kinase subfamily GO:0004017|GO:0005524|GO:0016776 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219 Amico_0648 b19afb36915a6d51f48191bf4ac8ac3e 218 SUPERFAMILY SSF52540 1 212 5.23E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0648 b19afb36915a6d51f48191bf4ac8ac3e 218 PRINTS PR00094 Adenylate kinase signature 32 46 7.8E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Amico_0648 b19afb36915a6d51f48191bf4ac8ac3e 218 PRINTS PR00094 Adenylate kinase signature 81 97 7.8E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Amico_0648 b19afb36915a6d51f48191bf4ac8ac3e 218 PRINTS PR00094 Adenylate kinase signature 4 17 7.8E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Amico_0648 b19afb36915a6d51f48191bf4ac8ac3e 218 PRINTS PR00094 Adenylate kinase signature 160 175 7.8E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Amico_0648 b19afb36915a6d51f48191bf4ac8ac3e 218 PRINTS PR00094 Adenylate kinase signature 177 191 7.8E-35 T 14-10-2018 IPR000850 Adenylate kinase/UMP-CMP kinase GO:0005524|GO:0006139|GO:0019205 KEGG: 00230+2.7.4.3|KEGG: 00730+2.7.4.3|MetaCyc: PWY-7219|Reactome: R-HSA-499943 Amico_0648 b19afb36915a6d51f48191bf4ac8ac3e 218 Gene3D G3DSA:3.40.50.300 1 213 2.7E-83 T 14-10-2018 Amico_0873 d036e3a53ae63d66887f15e608893cc8 400 SUPERFAMILY SSF69055 297 386 2.88E-20 T 14-10-2018 IPR036169 DXP reductoisomerase, C-terminal domain superfamily KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Amico_0873 d036e3a53ae63d66887f15e608893cc8 400 Gene3D G3DSA:1.10.1740.10 305 390 4.7E-21 T 14-10-2018 Amico_0873 d036e3a53ae63d66887f15e608893cc8 400 Gene3D G3DSA:3.40.50.720 2 149 7.1E-33 T 14-10-2018 Amico_0873 d036e3a53ae63d66887f15e608893cc8 400 TIGRFAM TIGR00243 Dxr: 1-deoxy-D-xylulose 5-phosphate reductoisomerase 8 382 6.7E-99 T 14-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Amico_0873 d036e3a53ae63d66887f15e608893cc8 400 Pfam PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal 146 228 1.3E-36 T 14-10-2018 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal GO:0005515 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Amico_0873 d036e3a53ae63d66887f15e608893cc8 400 Pfam PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase 8 131 6.7E-26 T 14-10-2018 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal GO:0055114|GO:0070402 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Amico_0873 d036e3a53ae63d66887f15e608893cc8 400 PIRSF PIRSF006205 5 390 2.0E-116 T 14-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Amico_0873 d036e3a53ae63d66887f15e608893cc8 400 Pfam PF13288 DXP reductoisomerase C-terminal domain 261 377 3.5E-27 T 14-10-2018 IPR026877 DXP reductoisomerase C-terminal domain KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Amico_0873 d036e3a53ae63d66887f15e608893cc8 400 SUPERFAMILY SSF55347 126 263 1.08E-47 T 14-10-2018 Amico_0873 d036e3a53ae63d66887f15e608893cc8 400 SUPERFAMILY SSF51735 7 143 8.58E-27 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0873 d036e3a53ae63d66887f15e608893cc8 400 Hamap MF_00183 1-deoxy-D-xylulose 5-phosphate reductoisomerase [dxr]. 8 384 37.7 T 14-10-2018 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO:0008299|GO:0030604|GO:0046872|GO:0055114 KEGG: 00900+1.1.1.267|MetaCyc: PWY-7560 Amico_0895 2a0e6315c2fcf802894caaf2a9b5133c 197 TIGRFAM TIGR03598 GTPase_YsxC: ribosome biogenesis GTP-binding protein YsxC 8 190 1.9E-57 T 14-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 Amico_0895 2a0e6315c2fcf802894caaf2a9b5133c 197 Hamap MF_00321 Probable GTP-binding protein EngB [engB]. 12 194 26.208 T 14-10-2018 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC GO:0005525 Amico_0895 2a0e6315c2fcf802894caaf2a9b5133c 197 SUPERFAMILY SSF52540 20 194 1.52E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0895 2a0e6315c2fcf802894caaf2a9b5133c 197 Gene3D G3DSA:3.40.50.300 3 197 1.0E-48 T 14-10-2018 Amico_0895 2a0e6315c2fcf802894caaf2a9b5133c 197 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 25 163 7.4E-13 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_0895 2a0e6315c2fcf802894caaf2a9b5133c 197 Pfam PF01926 50S ribosome-binding GTPase 26 145 3.3E-24 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_1794 5f9d1835137cd09f09bb102ce2e6955e 377 Gene3D G3DSA:3.20.20.10 26 248 4.8E-120 T 14-10-2018 IPR029066 PLP-binding barrel Amico_1794 5f9d1835137cd09f09bb102ce2e6955e 377 SUPERFAMILY SSF51419 24 254 2.33E-39 T 14-10-2018 IPR029066 PLP-binding barrel Amico_1794 5f9d1835137cd09f09bb102ce2e6955e 377 Pfam PF01168 Alanine racemase, N-terminal domain 24 250 1.3E-31 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1794 5f9d1835137cd09f09bb102ce2e6955e 377 Pfam PF14031 Putative serine dehydratase domain 264 358 1.4E-23 T 14-10-2018 IPR026956 D-serine dehydratase-like domain Amico_1794 5f9d1835137cd09f09bb102ce2e6955e 377 Gene3D G3DSA:2.40.37.20 17 373 4.8E-120 T 14-10-2018 Amico_1794 5f9d1835137cd09f09bb102ce2e6955e 377 SMART SM01119 264 360 1.2E-32 T 14-10-2018 IPR026956 D-serine dehydratase-like domain Amico_0290 6ddb9f743edd06cac0b019b8011159cc 346 Gene3D G3DSA:3.90.1150.10 250 344 4.7E-24 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0290 6ddb9f743edd06cac0b019b8011159cc 346 Pfam PF01212 Beta-eliminating lyase 6 287 1.4E-83 T 14-10-2018 IPR001597 Aromatic amino acid beta-eliminating lyase/threonine aldolase GO:0006520|GO:0016829 Reactome: R-HSA-6783984 Amico_0290 6ddb9f743edd06cac0b019b8011159cc 346 PIRSF PIRSF017617 2 346 7.6E-126 T 14-10-2018 IPR023603 Threonine aldolase Amico_0290 6ddb9f743edd06cac0b019b8011159cc 346 Gene3D G3DSA:3.40.640.10 3 249 9.9E-85 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0290 6ddb9f743edd06cac0b019b8011159cc 346 SUPERFAMILY SSF53383 5 341 2.5E-111 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 596 1.8E-281 T 14-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 Gene3D G3DSA:3.90.640.10 222 309 8.1E-154 T 14-10-2018 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 Gene3D G3DSA:3.30.420.40 178 360 8.1E-154 T 14-10-2018 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 189 202 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 SUPERFAMILY SSF53067 1 181 3.24E-62 T 14-10-2018 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 Gene3D G3DSA:2.60.34.10 371 554 1.7E-75 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 Gene3D G3DSA:3.30.420.40 5 370 8.1E-154 T 14-10-2018 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 PRINTS PR00301 70kDa heat shock protein signature 136 156 4.8E-76 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 PRINTS PR00301 70kDa heat shock protein signature 54 62 4.8E-76 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 PRINTS PR00301 70kDa heat shock protein signature 31 43 4.8E-76 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 PRINTS PR00301 70kDa heat shock protein signature 195 205 4.8E-76 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 PRINTS PR00301 70kDa heat shock protein signature 382 401 4.8E-76 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 PRINTS PR00301 70kDa heat shock protein signature 463 479 4.8E-76 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 PRINTS PR00301 70kDa heat shock protein signature 3 16 4.8E-76 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 PRINTS PR00301 70kDa heat shock protein signature 327 343 4.8E-76 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 PRINTS PR00301 70kDa heat shock protein signature 359 379 4.8E-76 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 SUPERFAMILY SSF53067 183 376 1.89E-66 T 14-10-2018 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 Pfam PF00012 Hsp70 protein 4 595 6.7E-250 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 SUPERFAMILY SSF100920 378 534 9.03E-59 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 330 344 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Amico_1801 fa9017b7f94a3c2e2beae2b967ddc546 629 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 623 35.363 T 14-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 Amico_0776 ef3c706580f48ebc6c26f239cdf1857d 556 SMART SM00965 197 247 0.0088 T 14-10-2018 IPR011662 Secretin/TonB, short N-terminal domain GO:0019867 Amico_0776 ef3c706580f48ebc6c26f239cdf1857d 556 Gene3D G3DSA:3.55.50.30 148 263 1.1E-9 T 14-10-2018 Amico_0776 ef3c706580f48ebc6c26f239cdf1857d 556 Pfam PF00263 Bacterial type II and III secretion system protein 393 552 1.3E-39 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 Amico_0776 ef3c706580f48ebc6c26f239cdf1857d 556 PRINTS PR00811 Bacterial general secretion pathway protein D signature 319 329 4.9E-17 T 14-10-2018 IPR001775 GspD/PilQ family Amico_0776 ef3c706580f48ebc6c26f239cdf1857d 556 PRINTS PR00811 Bacterial general secretion pathway protein D signature 388 412 4.9E-17 T 14-10-2018 IPR001775 GspD/PilQ family Amico_0776 ef3c706580f48ebc6c26f239cdf1857d 556 PRINTS PR00811 Bacterial general secretion pathway protein D signature 517 535 4.9E-17 T 14-10-2018 IPR001775 GspD/PilQ family Amico_0776 ef3c706580f48ebc6c26f239cdf1857d 556 PRINTS PR00811 Bacterial general secretion pathway protein D signature 540 554 4.9E-17 T 14-10-2018 IPR001775 GspD/PilQ family Amico_1153 71e9d74c8cc44cd2f836b222cc94ee4d 263 Gene3D G3DSA:1.10.10.10 1 73 7.3E-14 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1153 71e9d74c8cc44cd2f836b222cc94ee4d 263 Pfam PF00156 Phosphoribosyl transferase domain 127 250 6.0E-11 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Amico_1153 71e9d74c8cc44cd2f836b222cc94ee4d 263 Gene3D G3DSA:3.40.50.2020 75 262 2.0E-36 T 14-10-2018 Amico_1153 71e9d74c8cc44cd2f836b222cc94ee4d 263 SUPERFAMILY SSF46785 4 73 6.39E-10 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1153 71e9d74c8cc44cd2f836b222cc94ee4d 263 SUPERFAMILY SSF53271 86 242 1.84E-25 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Amico_1153 71e9d74c8cc44cd2f836b222cc94ee4d 263 ProDom PD029816 REPRESSOR OPERON PUR TRANSCRIPTION PURINE TRANSCRIPTIONAL PURR REGULATION DNA-BINDING GLYCOSYLTRANSFERASE 9 73 3.0E-4 T 14-10-2018 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 Amico_1153 71e9d74c8cc44cd2f836b222cc94ee4d 263 Pfam PF09182 Bacterial purine repressor, N-terminal 4 73 1.1E-20 T 14-10-2018 IPR015265 Bacterial purine repressor, N-terminal GO:0003677|GO:0006355 Amico_1509 d816db2bc9d457e7f15921a1a628de67 196 Gene3D G3DSA:1.10.10.10 104 187 2.0E-5 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1509 d816db2bc9d457e7f15921a1a628de67 196 SUPERFAMILY SSF88659 124 187 3.92E-9 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Amico_1509 d816db2bc9d457e7f15921a1a628de67 196 Pfam PF04542 Sigma-70 region 2 37 103 1.0E-15 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Amico_1509 d816db2bc9d457e7f15921a1a628de67 196 Gene3D G3DSA:1.20.120.1810 3 103 1.5E-18 T 14-10-2018 Amico_1509 d816db2bc9d457e7f15921a1a628de67 196 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 31 185 8.3E-26 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Amico_1509 d816db2bc9d457e7f15921a1a628de67 196 SUPERFAMILY SSF88946 17 101 7.06E-25 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 Gene3D G3DSA:3.30.70.370 590 850 3.3E-87 T 14-10-2018 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 SUPERFAMILY SSF53098 307 418 1.09E-5 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Amico_1259 275abe129b4f9a74acd1445611ae83af 854 Gene3D G3DSA:3.40.50.1010 9 278 5.7E-92 T 14-10-2018 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 Pfam PF01367 5'-3' exonuclease, C-terminal SAM fold 176 262 2.8E-27 T 14-10-2018 IPR020045 DNA polymerase I-like, H3TH domain GO:0003677|GO:0003824 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 SUPERFAMILY SSF88723 7 174 2.35E-49 T 14-10-2018 IPR029060 PIN-like domain superfamily Amico_1259 275abe129b4f9a74acd1445611ae83af 854 Gene3D G3DSA:1.20.1060.10 468 586 2.9E-29 T 14-10-2018 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 Gene3D G3DSA:3.30.420.10 305 466 6.3E-11 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 SUPERFAMILY SSF56672 447 853 2.33E-119 T 14-10-2018 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 Pfam PF02739 5'-3' exonuclease, N-terminal resolvase-like domain 9 174 2.8E-49 T 14-10-2018 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal GO:0003677 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 PRINTS PR00868 DNA-polymerase family A (pol I) signature 742 753 7.9E-57 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 PRINTS PR00868 DNA-polymerase family A (pol I) signature 683 708 7.9E-57 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 PRINTS PR00868 DNA-polymerase family A (pol I) signature 583 605 7.9E-57 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 PRINTS PR00868 DNA-polymerase family A (pol I) signature 773 789 7.9E-57 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 PRINTS PR00868 DNA-polymerase family A (pol I) signature 802 815 7.9E-57 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 PRINTS PR00868 DNA-polymerase family A (pol I) signature 629 652 7.9E-57 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 PRINTS PR00868 DNA-polymerase family A (pol I) signature 720 731 7.9E-57 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 PRINTS PR00868 DNA-polymerase family A (pol I) signature 659 672 7.9E-57 T 14-10-2018 IPR002298 DNA polymerase A GO:0003887|GO:0006261 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 Gene3D G3DSA:1.10.150.20 178 250 5.7E-92 T 14-10-2018 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 SUPERFAMILY SSF47807 176 286 6.43E-31 T 14-10-2018 IPR036279 5'-3' exonuclease, C-terminal domain superfamily Amico_1259 275abe129b4f9a74acd1445611ae83af 854 SMART SM00482 614 819 1.3E-81 T 14-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 TIGRFAM TIGR00593 pola: DNA polymerase I 10 851 1.9E-228 T 14-10-2018 IPR018320 DNA polymerase 1 GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 SMART SM00475 6 263 7.1E-115 T 14-10-2018 IPR002421 5'-3' exonuclease, N-terminal GO:0003677 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 Gene3D G3DSA:1.10.150.20 638 780 3.3E-87 T 14-10-2018 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 SMART SM00279 177 212 9.1E-13 T 14-10-2018 IPR008918 Helix-hairpin-helix motif, class 2 GO:0003677|GO:0003824 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 ProSitePatterns PS00447 DNA polymerase family A signature. 683 702 - T 14-10-2018 IPR019760 DNA-directed DNA polymerase, family A, conserved site GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_1259 275abe129b4f9a74acd1445611ae83af 854 Pfam PF00476 DNA polymerase family A 476 851 3.3E-119 T 14-10-2018 IPR001098 DNA-directed DNA polymerase, family A, palm domain GO:0003677|GO:0003887|GO:0006260 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_0294 74e984ac9aed2f4880b89612bd63af3a 260 TIGRFAM TIGR01966 RNasePH: ribonuclease PH 7 241 2.8E-106 T 14-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 Amico_0294 74e984ac9aed2f4880b89612bd63af3a 260 ProSitePatterns PS01277 Ribonuclease PH signature. 121 134 - T 14-10-2018 IPR018336 Ribonuclease PH, conserved site Amico_0294 74e984ac9aed2f4880b89612bd63af3a 260 SUPERFAMILY SSF54211 6 187 6.07E-43 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0294 74e984ac9aed2f4880b89612bd63af3a 260 SUPERFAMILY SSF55666 158 243 6.15E-23 T 14-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Amico_0294 74e984ac9aed2f4880b89612bd63af3a 260 Pfam PF01138 3' exoribonuclease family, domain 1 15 145 3.4E-18 T 14-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Amico_0294 74e984ac9aed2f4880b89612bd63af3a 260 Hamap MF_00564 Ribonuclease PH [rph]. 16 242 42.469 T 14-10-2018 IPR002381 Ribonuclease PH, bacterial-type GO:0000049|GO:0008033|GO:0009022 Amico_0294 74e984ac9aed2f4880b89612bd63af3a 260 Gene3D G3DSA:3.30.230.70 14 242 9.8E-60 T 14-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Amico_0294 74e984ac9aed2f4880b89612bd63af3a 260 Pfam PF03725 3' exoribonuclease family, domain 2 163 229 3.0E-14 T 14-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Amico_0777 a2ce3cf4e1cc92e26d0ed2a879e5c882 470 Gene3D G3DSA:3.40.50.620 19 225 2.5E-60 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0777 a2ce3cf4e1cc92e26d0ed2a879e5c882 470 TIGRFAM TIGR02432 lysidine_TilS_N: tRNA(Ile)-lysidine synthetase 40 219 7.8E-51 T 14-10-2018 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Amico_0777 a2ce3cf4e1cc92e26d0ed2a879e5c882 470 Hamap MF_01161 tRNA(Ile)-lysidine synthase [tilS]. 24 325 22.546 T 14-10-2018 IPR012094 tRNA(Ile)-lysidine synthase GO:0000166|GO:0005524|GO:0005737|GO:0008033|GO:0016879 Amico_0777 a2ce3cf4e1cc92e26d0ed2a879e5c882 470 Pfam PF01171 PP-loop family 41 216 4.2E-48 T 14-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Amico_0777 a2ce3cf4e1cc92e26d0ed2a879e5c882 470 SUPERFAMILY SSF52402 18 223 4.19E-53 T 14-10-2018 Amico_1913 e82341e37249a0d87abfca5f748f0d99 402 Gene3D G3DSA:1.20.1250.20 13 202 1.1E-15 T 14-10-2018 Amico_1913 e82341e37249a0d87abfca5f748f0d99 402 Gene3D G3DSA:1.20.1250.20 229 401 6.2E-12 T 14-10-2018 Amico_1913 e82341e37249a0d87abfca5f748f0d99 402 SUPERFAMILY SSF103473 16 395 1.57E-36 T 14-10-2018 IPR036259 MFS transporter superfamily Amico_1913 e82341e37249a0d87abfca5f748f0d99 402 Pfam PF07690 Major Facilitator Superfamily 22 227 6.1E-15 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Amico_1913 e82341e37249a0d87abfca5f748f0d99 402 Pfam PF07690 Major Facilitator Superfamily 250 395 2.2E-8 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Amico_0232 4a157632b6e3372fbc71438566f9809c 483 Pfam PF08323 Starch synthase catalytic domain 2 243 3.7E-65 T 14-10-2018 IPR013534 Starch synthase, catalytic domain KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Amico_0232 4a157632b6e3372fbc71438566f9809c 483 Hamap MF_00484 Glycogen synthase [glgA]. 1 477 39.739 T 14-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Amico_0232 4a157632b6e3372fbc71438566f9809c 483 SUPERFAMILY SSF53756 3 480 1.54E-105 T 14-10-2018 Amico_0232 4a157632b6e3372fbc71438566f9809c 483 TIGRFAM TIGR02095 glgA: glycogen/starch synthase, ADP-glucose type 1 476 8.1E-147 T 14-10-2018 IPR011835 Bacterial/plant glycogen synthase GO:0004373 KEGG: 00500+2.4.1.21|MetaCyc: PWY-622 Amico_0232 4a157632b6e3372fbc71438566f9809c 483 Gene3D G3DSA:3.40.50.2000 3 475 1.7E-157 T 14-10-2018 Amico_0232 4a157632b6e3372fbc71438566f9809c 483 Pfam PF00534 Glycosyl transferases group 1 294 443 8.2E-13 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Amico_0232 4a157632b6e3372fbc71438566f9809c 483 Gene3D G3DSA:3.40.50.2000 256 461 1.7E-157 T 14-10-2018 Amico_0159 285c7066a0d2ee0eba1e4ce5dd32a056 247 PIRSF PIRSF039137 4 241 5.0E-105 T 14-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Amico_0159 285c7066a0d2ee0eba1e4ce5dd32a056 247 SMART SM00382 33 234 4.5E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0159 285c7066a0d2ee0eba1e4ce5dd32a056 247 SUPERFAMILY SSF52540 6 239 1.36E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0159 285c7066a0d2ee0eba1e4ce5dd32a056 247 Pfam PF00005 ABC transporter 24 168 3.5E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0159 285c7066a0d2ee0eba1e4ce5dd32a056 247 Gene3D G3DSA:3.40.50.300 4 241 1.2E-63 T 14-10-2018 Amico_0159 285c7066a0d2ee0eba1e4ce5dd32a056 247 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1737 490490eefecb4b5728b5df2d409f3320 311 SUPERFAMILY SSF103481 193 296 4.32E-11 T 14-10-2018 Amico_1737 490490eefecb4b5728b5df2d409f3320 311 SUPERFAMILY SSF103481 49 145 3.66E-11 T 14-10-2018 Amico_1737 490490eefecb4b5728b5df2d409f3320 311 Pfam PF00892 EamA-like transporter family 154 291 1.8E-13 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_1737 490490eefecb4b5728b5df2d409f3320 311 Pfam PF00892 EamA-like transporter family 6 139 1.0E-16 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 Pfam PF07085 DRTGG domain 141 240 2.7E-23 T 14-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 SMART SM00116 252 299 0.0011 T 14-10-2018 IPR000644 CBS domain Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 SMART SM00116 77 125 0.43 T 14-10-2018 IPR000644 CBS domain Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 Pfam PF00571 CBS domain 72 125 1.7E-7 T 14-10-2018 IPR000644 CBS domain Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 Pfam PF00571 CBS domain 252 296 1.9E-5 T 14-10-2018 IPR000644 CBS domain Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 Gene3D G3DSA:3.10.310.20 421 540 9.1E-36 T 14-10-2018 IPR038222 DHHA2 domain superfamily KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 Gene3D G3DSA:3.90.1640.10 263 420 6.7E-48 T 14-10-2018 Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 SUPERFAMILY SSF64182 3 536 8.16E-74 T 14-10-2018 IPR038763 DHH phosphoesterase superfamily Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 Pfam PF02833 DHHA2 domain 414 536 3.1E-17 T 14-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 Gene3D G3DSA:3.90.1640.10 1 106 6.6E-22 T 14-10-2018 Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 Gene3D G3DSA:3.40.1390.20 128 241 4.6E-30 T 14-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 SUPERFAMILY SSF54631 69 297 1.04E-19 T 14-10-2018 Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 Pfam PF01368 DHH family 4 377 7.3E-33 T 14-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 SUPERFAMILY SSF75138 136 247 1.44E-22 T 14-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Amico_1260 19db82a0c5007ac5d35d29dfa6ca760d 540 SMART SM01131 412 537 7.6E-40 T 14-10-2018 IPR004097 DHHA2 domain GO:0005737|GO:0016462 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Amico_0824 6dba69972b5db718898f16988937ca81 387 SMART SM00864 17 209 3.3E-98 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Amico_0824 6dba69972b5db718898f16988937ca81 387 Pfam PF00091 Tubulin/FtsZ family, GTPase domain 17 177 2.4E-38 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Amico_0824 6dba69972b5db718898f16988937ca81 387 PRINTS PR00423 Cell division protein FtsZ signature 216 237 6.2E-48 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Amico_0824 6dba69972b5db718898f16988937ca81 387 PRINTS PR00423 Cell division protein FtsZ signature 193 215 6.2E-48 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Amico_0824 6dba69972b5db718898f16988937ca81 387 PRINTS PR00423 Cell division protein FtsZ signature 102 122 6.2E-48 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Amico_0824 6dba69972b5db718898f16988937ca81 387 PRINTS PR00423 Cell division protein FtsZ signature 130 151 6.2E-48 T 14-10-2018 IPR003008 Tubulin/FtsZ, GTPase domain GO:0003924 Reactome: R-HSA-380320 Amico_0824 6dba69972b5db718898f16988937ca81 387 Gene3D G3DSA:3.40.50.1440 8 224 2.0E-79 T 14-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 Amico_0824 6dba69972b5db718898f16988937ca81 387 Gene3D G3DSA:3.30.1330.20 225 334 1.4E-37 T 14-10-2018 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily Reactome: R-HSA-380320 Amico_0824 6dba69972b5db718898f16988937ca81 387 Pfam PF12327 FtsZ family, C-terminal domain 226 319 5.7E-32 T 14-10-2018 IPR024757 Cell division protein FtsZ, C-terminal Amico_0824 6dba69972b5db718898f16988937ca81 387 SUPERFAMILY SSF52490 17 212 1.16E-65 T 14-10-2018 IPR036525 Tubulin/FtsZ, GTPase domain superfamily Reactome: R-HSA-380320 Amico_0824 6dba69972b5db718898f16988937ca81 387 TIGRFAM TIGR00065 ftsZ: cell division protein FtsZ 11 329 9.0E-124 T 14-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 Amico_0824 6dba69972b5db718898f16988937ca81 387 Hamap MF_00909 Cell division protein FtsZ [ftsZ]. 13 353 37.131 T 14-10-2018 IPR000158 Cell division protein FtsZ GO:0005525 Amico_0824 6dba69972b5db718898f16988937ca81 387 SMART SM00865 211 328 3.8E-51 T 14-10-2018 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain Reactome: R-HSA-380320 Amico_0824 6dba69972b5db718898f16988937ca81 387 ProSitePatterns PS01135 FtsZ protein signature 2. 101 122 - T 14-10-2018 IPR020805 Cell division protein FtsZ, conserved site GO:0005525|GO:0005737 Amico_0824 6dba69972b5db718898f16988937ca81 387 SUPERFAMILY SSF55307 211 323 3.2E-42 T 14-10-2018 IPR008280 Tubulin/FtsZ, C-terminal Reactome: R-HSA-380320 Amico_0998 847f4525b52e8b2ab519872934dab0cd 413 Pfam PF00925 GTP cyclohydrolase II 214 381 3.5E-74 T 14-10-2018 IPR032677 GTP cyclohydrolase II KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Amico_0998 847f4525b52e8b2ab519872934dab0cd 413 Hamap MF_01283 Riboflavin biosynthesis protein RibBA [ribBA]. 8 404 55.468 T 14-10-2018 IPR016299 Riboflavin biosynthesis protein RibBA GO:0009231 KEGG: 00740+3.5.4.25+4.1.99.12|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Amico_0998 847f4525b52e8b2ab519872934dab0cd 413 TIGRFAM TIGR00506 ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 9 205 1.8E-77 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Amico_0998 847f4525b52e8b2ab519872934dab0cd 413 Gene3D G3DSA:3.90.870.10 1 211 1.1E-91 T 14-10-2018 Amico_0998 847f4525b52e8b2ab519872934dab0cd 413 SUPERFAMILY SSF55821 5 206 8.47E-88 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Amico_0998 847f4525b52e8b2ab519872934dab0cd 413 Hamap MF_00180 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 7 209 39.62 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Amico_0998 847f4525b52e8b2ab519872934dab0cd 413 PIRSF PIRSF001259 7 413 5.2E-188 T 14-10-2018 Amico_0998 847f4525b52e8b2ab519872934dab0cd 413 TIGRFAM TIGR00505 ribA: GTP cyclohydrolase II 213 406 4.2E-78 T 14-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Amico_0998 847f4525b52e8b2ab519872934dab0cd 413 Gene3D G3DSA:3.40.50.10990 212 386 2.8E-77 T 14-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Amico_0998 847f4525b52e8b2ab519872934dab0cd 413 Pfam PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase 13 204 8.1E-88 T 14-10-2018 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB GO:0008686|GO:0009231 KEGG: 00740+4.1.99.12|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Amico_0998 847f4525b52e8b2ab519872934dab0cd 413 Hamap MF_00179 GTP cyclohydrolase-2 [ribA]. 210 408 41.598 T 14-10-2018 IPR000926 GTP cyclohydrolase II, RibA GO:0003935|GO:0009231 KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Amico_0998 847f4525b52e8b2ab519872934dab0cd 413 SUPERFAMILY SSF142695 210 385 1.57E-73 T 14-10-2018 IPR036144 RibA-like superfamily KEGG: 00740+3.5.4.25|KEGG: 00790+3.5.4.25|MetaCyc: PWY-6168|MetaCyc: PWY-7539|MetaCyc: PWY-7991 Amico_1022 d891f9dabfdacc4b69726f66abe38329 164 PIRSF PIRSF004749 2 164 1.0E-48 T 14-10-2018 IPR023635 Peptide deformylase Amico_1022 d891f9dabfdacc4b69726f66abe38329 164 Pfam PF01327 Polypeptide deformylase 6 149 5.7E-44 T 14-10-2018 IPR023635 Peptide deformylase Amico_1022 d891f9dabfdacc4b69726f66abe38329 164 PRINTS PR01576 Peptide deformylase signature 117 146 1.6E-30 T 14-10-2018 IPR023635 Peptide deformylase Amico_1022 d891f9dabfdacc4b69726f66abe38329 164 PRINTS PR01576 Peptide deformylase signature 86 97 1.6E-30 T 14-10-2018 IPR023635 Peptide deformylase Amico_1022 d891f9dabfdacc4b69726f66abe38329 164 PRINTS PR01576 Peptide deformylase signature 33 62 1.6E-30 T 14-10-2018 IPR023635 Peptide deformylase Amico_1022 d891f9dabfdacc4b69726f66abe38329 164 PRINTS PR01576 Peptide deformylase signature 98 116 1.6E-30 T 14-10-2018 IPR023635 Peptide deformylase Amico_1022 d891f9dabfdacc4b69726f66abe38329 164 SUPERFAMILY SSF56420 6 160 6.54E-52 T 14-10-2018 IPR036821 Peptide deformylase superfamily Amico_1022 d891f9dabfdacc4b69726f66abe38329 164 TIGRFAM TIGR00079 pept_deformyl: peptide deformylase 8 156 6.1E-43 T 14-10-2018 IPR023635 Peptide deformylase Amico_1022 d891f9dabfdacc4b69726f66abe38329 164 Gene3D G3DSA:3.90.45.10 1 164 4.1E-53 T 14-10-2018 IPR036821 Peptide deformylase superfamily Amico_1022 d891f9dabfdacc4b69726f66abe38329 164 Hamap MF_00163 Peptide deformylase [def]. 2 159 27.072 T 14-10-2018 IPR023635 Peptide deformylase Amico_1405 ce3a75110a0b859c98fc978fcdbe88c8 513 Pfam PF01966 HD domain 330 421 7.1E-18 T 14-10-2018 IPR006674 HD domain Amico_1405 ce3a75110a0b859c98fc978fcdbe88c8 513 SUPERFAMILY SSF109604 318 463 1.19E-29 T 14-10-2018 Amico_1405 ce3a75110a0b859c98fc978fcdbe88c8 513 SMART SM00322 201 268 3.2E-5 T 14-10-2018 IPR004087 K Homology domain GO:0003676 Amico_1405 ce3a75110a0b859c98fc978fcdbe88c8 513 Gene3D G3DSA:1.10.3210.10 319 468 1.9E-21 T 14-10-2018 Amico_1405 ce3a75110a0b859c98fc978fcdbe88c8 513 Pfam PF00013 KH domain 206 254 5.3E-6 T 14-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 Amico_1405 ce3a75110a0b859c98fc978fcdbe88c8 513 TIGRFAM TIGR00277 HDIG: HDIG domain 325 402 7.3E-22 T 14-10-2018 IPR006675 HDIG domain Amico_1405 ce3a75110a0b859c98fc978fcdbe88c8 513 SUPERFAMILY SSF54791 196 296 1.31E-14 T 14-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Amico_1405 ce3a75110a0b859c98fc978fcdbe88c8 513 Hamap MF_00335 Ribonuclease Y [rny]. 5 513 24.268 T 14-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 Amico_1405 ce3a75110a0b859c98fc978fcdbe88c8 513 Gene3D G3DSA:3.30.1370.10 201 297 2.7E-7 T 14-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Amico_1405 ce3a75110a0b859c98fc978fcdbe88c8 513 SMART SM00471 325 431 3.0E-11 T 14-10-2018 IPR003607 HD/PDEase domain Amico_1405 ce3a75110a0b859c98fc978fcdbe88c8 513 TIGRFAM TIGR03319 RNase_Y: ribonuclease Y 10 513 2.7E-212 T 14-10-2018 IPR017705 Ribonuclease Y GO:0003723|GO:0006402|GO:0016020 Amico_1405 ce3a75110a0b859c98fc978fcdbe88c8 513 Pfam PF12072 Domain of unknown function (DUF3552) 6 197 7.4E-51 T 14-10-2018 IPR022711 Ribonuclease Y, N-terminal Amico_1015 d718d7cdf08b70e74de77bd959ffe8d1 179 Pfam PF00293 NUDIX domain 41 154 1.5E-18 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Amico_1015 d718d7cdf08b70e74de77bd959ffe8d1 179 SUPERFAMILY SSF55811 6 175 1.62E-45 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Amico_1015 d718d7cdf08b70e74de77bd959ffe8d1 179 ProSitePatterns PS00893 Nudix box signature. 76 97 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Amico_1015 d718d7cdf08b70e74de77bd959ffe8d1 179 Gene3D G3DSA:3.90.79.10 3 177 1.5E-52 T 14-10-2018 Amico_0855 ee9a14c69cba0ecc5d78ebd8b880c8d7 787 Gene3D G3DSA:1.10.10.10 708 773 4.5E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0855 ee9a14c69cba0ecc5d78ebd8b880c8d7 787 SUPERFAMILY SSF46785 715 776 3.74E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0855 ee9a14c69cba0ecc5d78ebd8b880c8d7 787 SMART SM00843 712 777 8.6E-32 T 14-10-2018 IPR018541 FtsK gamma domain Amico_0855 ee9a14c69cba0ecc5d78ebd8b880c8d7 787 Pfam PF09397 Ftsk gamma domain 715 774 4.8E-26 T 14-10-2018 IPR018541 FtsK gamma domain Amico_0855 ee9a14c69cba0ecc5d78ebd8b880c8d7 787 SUPERFAMILY SSF52540 397 679 1.89E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0855 ee9a14c69cba0ecc5d78ebd8b880c8d7 787 Pfam PF01580 FtsK/SpoIIIE family 423 558 1.3E-36 T 14-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 Amico_0855 ee9a14c69cba0ecc5d78ebd8b880c8d7 787 Pfam PF01580 FtsK/SpoIIIE family 562 611 5.5E-14 T 14-10-2018 IPR002543 FtsK domain GO:0000166|GO:0003677|GO:0005524 Amico_0855 ee9a14c69cba0ecc5d78ebd8b880c8d7 787 Gene3D G3DSA:3.40.50.300 420 696 1.6E-95 T 14-10-2018 Amico_0855 ee9a14c69cba0ecc5d78ebd8b880c8d7 787 Gene3D G3DSA:3.30.980.40 315 419 3.0E-32 T 14-10-2018 Amico_0855 ee9a14c69cba0ecc5d78ebd8b880c8d7 787 SMART SM00382 458 632 0.0028 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 Gene3D G3DSA:1.10.287.380 814 886 7.5E-18 T 14-10-2018 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9|Reactome: R-HSA-379716 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 Gene3D G3DSA:3.90.740.10 181 348 0.0 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 SUPERFAMILY SSF47323 580 835 4.3E-64 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 49 60 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 20 567 7.6E-217 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 TIGRFAM TIGR00422 valS: valine--tRNA ligase 9 867 0.0 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 Pfam PF10458 Valyl tRNA synthetase tRNA binding arm 821 886 2.5E-18 T 14-10-2018 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm GO:0000166|GO:0004832|GO:0005524|GO:0005737|GO:0006438 KEGG: 00970+6.1.1.9 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 SUPERFAMILY SSF46589 821 885 5.75E-15 T 14-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 Pfam PF08264 Anticodon-binding domain of tRNA 612 760 1.4E-39 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 Gene3D G3DSA:1.10.730.10 9 747 0.0 T 14-10-2018 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 PRINTS PR00986 Valyl-tRNA synthetase signature 351 364 1.4E-35 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 PRINTS PR00986 Valyl-tRNA synthetase signature 449 470 1.4E-35 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 PRINTS PR00986 Valyl-tRNA synthetase signature 480 498 1.4E-35 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 PRINTS PR00986 Valyl-tRNA synthetase signature 42 53 1.4E-35 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 PRINTS PR00986 Valyl-tRNA synthetase signature 236 253 1.4E-35 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 SUPERFAMILY SSF52374 8 575 4.02E-149 T 14-10-2018 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 Hamap MF_02004 Valine--tRNA ligase [valS]. 8 886 15.834 T 14-10-2018 IPR002303 Valine-tRNA ligase GO:0000166|GO:0004832|GO:0005524|GO:0006438 KEGG: 00970+6.1.1.9 Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 Gene3D G3DSA:3.40.50.620 28 529 0.0 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0894 fd3bd8018d72be25a67ed641bf11f4db 888 SUPERFAMILY SSF50677 197 347 1.83E-57 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Amico_0917 8344a03b14ba152f1b73d842596b1edd 432 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 2 426 30.58 T 14-10-2018 IPR021144 Uncharacterised protein family UPF0597 Amico_0917 8344a03b14ba152f1b73d842596b1edd 432 PIRSF PIRSF006054 1 427 2.5E-116 T 14-10-2018 IPR021144 Uncharacterised protein family UPF0597 Amico_0917 8344a03b14ba152f1b73d842596b1edd 432 Pfam PF03313 Serine dehydratase alpha chain 171 422 9.1E-47 T 14-10-2018 IPR005130 Serine dehydratase-like, alpha subunit Amico_0327 2899c87157a4a029b7baac4bbb47a0fd 301 SUPERFAMILY SSF103481 43 142 5.36E-11 T 14-10-2018 Amico_0327 2899c87157a4a029b7baac4bbb47a0fd 301 SUPERFAMILY SSF103481 191 283 1.83E-10 T 14-10-2018 Amico_0327 2899c87157a4a029b7baac4bbb47a0fd 301 TIGRFAM TIGR00688 rarD: protein RarD 8 260 8.5E-67 T 14-10-2018 IPR004626 RarD protein GO:0005887 Amico_0327 2899c87157a4a029b7baac4bbb47a0fd 301 Pfam PF00892 EamA-like transporter family 152 282 1.1E-7 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_0327 2899c87157a4a029b7baac4bbb47a0fd 301 Pfam PF00892 EamA-like transporter family 9 142 2.6E-14 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_1201 3035db94829b3e10ffcca4b8cbb8b55b 384 PRINTS PR00811 Bacterial general secretion pathway protein D signature 370 384 1.7E-17 T 14-10-2018 IPR001775 GspD/PilQ family Amico_1201 3035db94829b3e10ffcca4b8cbb8b55b 384 PRINTS PR00811 Bacterial general secretion pathway protein D signature 347 365 1.7E-17 T 14-10-2018 IPR001775 GspD/PilQ family Amico_1201 3035db94829b3e10ffcca4b8cbb8b55b 384 PRINTS PR00811 Bacterial general secretion pathway protein D signature 218 242 1.7E-17 T 14-10-2018 IPR001775 GspD/PilQ family Amico_1201 3035db94829b3e10ffcca4b8cbb8b55b 384 PRINTS PR00811 Bacterial general secretion pathway protein D signature 253 263 1.7E-17 T 14-10-2018 IPR001775 GspD/PilQ family Amico_1201 3035db94829b3e10ffcca4b8cbb8b55b 384 PRINTS PR00811 Bacterial general secretion pathway protein D signature 160 170 1.7E-17 T 14-10-2018 IPR001775 GspD/PilQ family Amico_1201 3035db94829b3e10ffcca4b8cbb8b55b 384 Pfam PF04972 BON domain 108 155 2.1E-8 T 14-10-2018 IPR007055 BON domain Amico_1201 3035db94829b3e10ffcca4b8cbb8b55b 384 Pfam PF00263 Bacterial type II and III secretion system protein 222 382 6.0E-44 T 14-10-2018 IPR004846 Type II/III secretion system GO:0009306 Amico_1201 3035db94829b3e10ffcca4b8cbb8b55b 384 Pfam PF13629 Pilus formation protein N terminal region 28 94 2.8E-15 T 14-10-2018 IPR032789 Pilus formation protein, N-terminal Amico_1537 82c778a2621f800b53304851cf7779c2 556 Gene3D G3DSA:3.10.410.10 443 532 2.9E-35 T 14-10-2018 Amico_1537 82c778a2621f800b53304851cf7779c2 556 ProSitePatterns PS00721 Formate--tetrahydrofolate ligase signature 1. 104 114 - T 14-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Amico_1537 82c778a2621f800b53304851cf7779c2 556 Hamap MF_01543 Formate--tetrahydrofolate ligase [fhs]. 2 556 49.421 T 14-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Amico_1537 82c778a2621f800b53304851cf7779c2 556 Gene3D G3DSA:3.40.50.300 7 438 1.1E-209 T 14-10-2018 Amico_1537 82c778a2621f800b53304851cf7779c2 556 SUPERFAMILY SSF52540 5 554 2.82E-247 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1537 82c778a2621f800b53304851cf7779c2 556 Pfam PF01268 Formate--tetrahydrofolate ligase 4 556 9.3E-273 T 14-10-2018 IPR000559 Formate-tetrahydrofolate ligase, FTHFS GO:0004329|GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Amico_1537 82c778a2621f800b53304851cf7779c2 556 Gene3D G3DSA:3.30.1510.10 130 248 1.1E-209 T 14-10-2018 Amico_1537 82c778a2621f800b53304851cf7779c2 556 ProSitePatterns PS00722 Formate--tetrahydrofolate ligase signature 2. 329 340 - T 14-10-2018 IPR020628 Formate-tetrahydrofolate ligase, FTHFS, conserved site GO:0005524 KEGG: 00670+6.3.4.3|KEGG: 00720+6.3.4.3|MetaCyc: PWY-1722|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3841|Reactome: R-HSA-196757 Amico_1243 0c0f200f229913dcf2212621707f6ce6 803 Gene3D G3DSA:2.60.420.10 721 788 1.2E-8 T 14-10-2018 Amico_1243 0c0f200f229913dcf2212621707f6ce6 803 SUPERFAMILY SSF48208 275 772 1.63E-109 T 14-10-2018 IPR008928 Six-hairpin glycosidase superfamily GO:0003824 Amico_1243 0c0f200f229913dcf2212621707f6ce6 803 Gene3D G3DSA:1.50.10.10 317 720 7.9E-156 T 14-10-2018 IPR012341 Six-hairpin glycosidase-like superfamily GO:0003824 Amico_1243 0c0f200f229913dcf2212621707f6ce6 803 PIRSF PIRSF036289 1 800 2.4E-206 T 14-10-2018 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase Amico_1243 0c0f200f229913dcf2212621707f6ce6 803 SUPERFAMILY SSF74650 3 264 5.65E-66 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Amico_1243 0c0f200f229913dcf2212621707f6ce6 803 Pfam PF03636 Glycosyl hydrolase family 65, N-terminal domain 7 263 4.1E-67 T 14-10-2018 IPR005196 Glycoside hydrolase, family 65, N-terminal GO:0003824|GO:0005975 Amico_1243 0c0f200f229913dcf2212621707f6ce6 803 Pfam PF03632 Glycosyl hydrolase family 65 central catalytic domain 323 734 1.8E-140 T 14-10-2018 IPR005195 Glycoside hydrolase, family 65, central catalytic GO:0003824|GO:0005975 Amico_1243 0c0f200f229913dcf2212621707f6ce6 803 Gene3D G3DSA:2.70.98.40 1 266 4.2E-77 T 14-10-2018 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily Amico_0720 74ca6d37a47d373c1d31f1f20fa74ba1 321 Pfam PF16868 NMT1-like family 31 315 1.4E-95 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_0720 74ca6d37a47d373c1d31f1f20fa74ba1 321 Gene3D G3DSA:3.40.190.10 115 252 2.9E-103 T 14-10-2018 Amico_0720 74ca6d37a47d373c1d31f1f20fa74ba1 321 SUPERFAMILY SSF53850 27 316 1.42E-75 T 14-10-2018 Amico_0720 74ca6d37a47d373c1d31f1f20fa74ba1 321 Gene3D G3DSA:3.40.190.10 31 315 2.9E-103 T 14-10-2018 Amico_0720 74ca6d37a47d373c1d31f1f20fa74ba1 321 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 3 315 1.8E-102 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_1062 c8f57c4c7d6d6503cf8e4f2ab6e5a1c9 83 ProSitePatterns PS00012 Phosphopantetheine attachment site. 34 49 - T 14-10-2018 IPR006162 Phosphopantetheine attachment site Amico_1062 c8f57c4c7d6d6503cf8e4f2ab6e5a1c9 83 Hamap MF_01217 Acyl carrier protein [acpP]. 5 79 20.912 T 14-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Amico_1062 c8f57c4c7d6d6503cf8e4f2ab6e5a1c9 83 TIGRFAM TIGR00517 acyl_carrier: acyl carrier protein 4 75 9.3E-31 T 14-10-2018 IPR003231 Acyl carrier protein (ACP) GO:0006633 Reactome: R-HSA-389661|Reactome: R-HSA-611105|Reactome: R-HSA-6799198|Reactome: R-HSA-77289 Amico_1062 c8f57c4c7d6d6503cf8e4f2ab6e5a1c9 83 Pfam PF00550 Phosphopantetheine attachment site 10 72 1.3E-14 T 14-10-2018 IPR009081 Phosphopantetheine binding ACP domain Amico_1062 c8f57c4c7d6d6503cf8e4f2ab6e5a1c9 83 Gene3D G3DSA:1.10.1200.10 1 80 1.1E-26 T 14-10-2018 IPR036736 ACP-like superfamily Amico_1062 c8f57c4c7d6d6503cf8e4f2ab6e5a1c9 83 SUPERFAMILY SSF47336 1 78 1.09E-20 T 14-10-2018 IPR036736 ACP-like superfamily Amico_0548 3b0a9c02ec8858dbe56eeefae03eb49e 329 Pfam PF00710 Asparaginase, N-terminal 6 191 1.9E-34 T 14-10-2018 IPR027474 L-asparaginase, N-terminal Reactome: R-HSA-70614 Amico_0548 3b0a9c02ec8858dbe56eeefae03eb49e 329 PRINTS PR00139 Asparaginase/glutaminase family signature 7 18 2.1E-10 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Amico_0548 3b0a9c02ec8858dbe56eeefae03eb49e 329 PRINTS PR00139 Asparaginase/glutaminase family signature 258 276 2.1E-10 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Amico_0548 3b0a9c02ec8858dbe56eeefae03eb49e 329 PRINTS PR00139 Asparaginase/glutaminase family signature 81 99 2.1E-10 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Amico_0548 3b0a9c02ec8858dbe56eeefae03eb49e 329 PIRSF PIRSF500176 3 329 1.1E-53 T 14-10-2018 Amico_0548 3b0a9c02ec8858dbe56eeefae03eb49e 329 Gene3D G3DSA:3.40.50.40 208 327 2.0E-22 T 14-10-2018 IPR027473 L-asparaginase, C-terminal Reactome: R-HSA-70614 Amico_0548 3b0a9c02ec8858dbe56eeefae03eb49e 329 SUPERFAMILY SSF53774 5 327 1.57E-65 T 14-10-2018 IPR036152 Asparaginase/glutaminase-like superfamily Reactome: R-HSA-70614 Amico_0548 3b0a9c02ec8858dbe56eeefae03eb49e 329 SMART SM00870 6 323 1.6E-54 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Amico_0548 3b0a9c02ec8858dbe56eeefae03eb49e 329 Gene3D G3DSA:3.40.50.1170 3 206 3.9E-40 T 14-10-2018 IPR037152 L-asparaginase, N-terminal domain superfamily Reactome: R-HSA-70614 Amico_0548 3b0a9c02ec8858dbe56eeefae03eb49e 329 PIRSF PIRSF001220 2 329 6.5E-55 T 14-10-2018 IPR006034 Asparaginase/glutaminase-like Reactome: R-HSA-70614 Amico_0008 53ccde4bf5bb9a9e4262bf3502545385 292 PIRSF PIRSF006483 3 291 1.4E-68 T 14-10-2018 IPR003740 Uncharacterised membrane protein YitT Amico_0008 53ccde4bf5bb9a9e4262bf3502545385 292 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 21 224 6.0E-54 T 14-10-2018 IPR003740 Uncharacterised membrane protein YitT Amico_0008 53ccde4bf5bb9a9e4262bf3502545385 292 Gene3D G3DSA:3.30.70.120 201 276 8.0E-22 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Amico_0008 53ccde4bf5bb9a9e4262bf3502545385 292 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 229 283 3.1E-19 T 14-10-2018 IPR019264 Domain of unknown function DUF2179 Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 Gene3D G3DSA:1.10.287.110 4 124 6.3E-36 T 14-10-2018 IPR036869 Chaperone J-domain superfamily Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 SMART SM00271 6 63 3.2E-29 T 14-10-2018 IPR001623 DnaJ domain Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 PRINTS PR00625 DnaJ domain signature 9 27 5.5E-24 T 14-10-2018 IPR001623 DnaJ domain Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 PRINTS PR00625 DnaJ domain signature 27 42 5.5E-24 T 14-10-2018 IPR001623 DnaJ domain Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 PRINTS PR00625 DnaJ domain signature 43 63 5.5E-24 T 14-10-2018 IPR001623 DnaJ domain Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 PRINTS PR00625 DnaJ domain signature 63 82 5.5E-24 T 14-10-2018 IPR001623 DnaJ domain Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 SUPERFAMILY SSF49493 132 229 3.14E-15 T 14-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 Pfam PF01556 DnaJ C terminal domain 139 296 3.0E-36 T 14-10-2018 IPR002939 Chaperone DnaJ, C-terminal Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 Pfam PF00226 DnaJ domain 7 68 3.9E-25 T 14-10-2018 IPR001623 DnaJ domain Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 Gene3D G3DSA:2.60.260.20 217 320 5.5E-27 T 14-10-2018 Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 SUPERFAMILY SSF49493 222 307 5.76E-21 T 14-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 SUPERFAMILY SSF46565 3 118 3.14E-33 T 14-10-2018 IPR036869 Chaperone J-domain superfamily Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 Gene3D G3DSA:2.60.260.20 133 216 1.8E-17 T 14-10-2018 Amico_0169 6f65db402ccad81788596b4e1472dcdc 324 ProSitePatterns PS00636 Nt-dnaJ domain signature. 48 67 - T 14-10-2018 IPR018253 DnaJ domain, conserved site Amico_0791 ca6faaccdc3f00fa6a454e955fffea0e 508 TIGRFAM TIGR00197 yjeF_nterm: YjeF family N-terminal domain 11 214 8.7E-43 T 14-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Amico_0791 ca6faaccdc3f00fa6a454e955fffea0e 508 SUPERFAMILY SSF53613 230 493 4.7E-58 T 14-10-2018 IPR029056 Ribokinase-like Amico_0791 ca6faaccdc3f00fa6a454e955fffea0e 508 TIGRFAM TIGR00196 yjeF_cterm: YjeF family C-terminal domain 229 497 7.8E-59 T 14-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Amico_0791 ca6faaccdc3f00fa6a454e955fffea0e 508 Pfam PF01256 Carbohydrate kinase 251 493 1.3E-51 T 14-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Amico_0791 ca6faaccdc3f00fa6a454e955fffea0e 508 Gene3D G3DSA:3.40.1190.20 222 499 3.3E-73 T 14-10-2018 IPR029056 Ribokinase-like Amico_0791 ca6faaccdc3f00fa6a454e955fffea0e 508 SUPERFAMILY SSF64153 4 249 1.16E-52 T 14-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 Amico_0791 ca6faaccdc3f00fa6a454e955fffea0e 508 Gene3D G3DSA:3.40.50.10260 2 218 3.0E-56 T 14-10-2018 IPR036652 YjeF N-terminal domain superfamily MetaCyc: PWY-6938 Amico_0791 ca6faaccdc3f00fa6a454e955fffea0e 508 Hamap MF_01965 ADP-dependent (S)-NAD(P)H-hydrate dehydratase [nnrD]. 228 502 21.201 T 14-10-2018 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase GO:0052855 Reactome: R-HSA-197264 Amico_0791 ca6faaccdc3f00fa6a454e955fffea0e 508 PIRSF PIRSF017184 2 505 4.8E-121 T 14-10-2018 IPR030677 Bifunctional NAD(P)H-hydrate repair enzyme Nnr GO:0052855 MetaCyc: PWY-6938 Amico_0791 ca6faaccdc3f00fa6a454e955fffea0e 508 Pfam PF03853 YjeF-related protein N-terminus 27 192 2.1E-39 T 14-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Amico_0791 ca6faaccdc3f00fa6a454e955fffea0e 508 Hamap MF_01966 NAD(P)H-hydrate epimerase [nnrE]. 6 213 22.516 T 14-10-2018 IPR004443 YjeF N-terminal domain MetaCyc: PWY-6938 Amico_0716 cef376e1e6bbd3519cba1b3ab74a5653 259 SUPERFAMILY SSF46785 10 82 1.72E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0716 cef376e1e6bbd3519cba1b3ab74a5653 259 Gene3D G3DSA:1.10.10.10 8 83 2.8E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0716 cef376e1e6bbd3519cba1b3ab74a5653 259 Pfam PF09339 IclR helix-turn-helix domain 10 60 1.0E-15 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_0716 cef376e1e6bbd3519cba1b3ab74a5653 259 SUPERFAMILY SSF55781 66 252 5.36E-33 T 14-10-2018 Amico_0716 cef376e1e6bbd3519cba1b3ab74a5653 259 Gene3D G3DSA:3.30.450.40 84 255 1.4E-36 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_0716 cef376e1e6bbd3519cba1b3ab74a5653 259 Pfam PF01614 Bacterial transcriptional regulator 126 249 8.5E-17 T 14-10-2018 IPR014757 Transcription regulator IclR, C-terminal Amico_0716 cef376e1e6bbd3519cba1b3ab74a5653 259 SMART SM00346 8 98 1.2E-19 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 SUPERFAMILY SSF55347 157 318 5.95E-69 T 14-10-2018 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 Gene3D G3DSA:3.40.50.720 5 330 1.3E-145 T 14-10-2018 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 Pfam PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain 162 317 6.5E-64 T 14-10-2018 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 Gene3D G3DSA:3.30.360.10 156 319 1.3E-145 T 14-10-2018 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 SMART SM00846 4 157 8.2E-88 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 TIGRFAM TIGR01534 GAPDH-I: glyceraldehyde-3-phosphate dehydrogenase, type I 5 329 5.1E-132 T 14-10-2018 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I GO:0006006|GO:0016620|GO:0050661|GO:0051287|GO:0055114 KEGG: 00010+1.2.1.12|KEGG: 00710+1.2.1.12|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 SUPERFAMILY SSF51735 4 173 2.48E-62 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 Pfam PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain 4 106 2.0E-35 T 14-10-2018 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 151 169 1.9E-39 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 178 194 1.9E-39 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 113 126 1.9E-39 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 234 251 1.9E-39 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 PRINTS PR00078 Glyceraldehyde-3-phosphate dehydrogenase signature 274 289 1.9E-39 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 ProSitePatterns PS00071 Glyceraldehyde 3-phosphate dehydrogenase active site. 155 162 - T 14-10-2018 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0834 5d4c57836f1b772c9166d61afb8aa730 339 PIRSF PIRSF000149 2 338 1.6E-126 T 14-10-2018 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family GO:0016620|GO:0055114 Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0136 09635bdec1218f41dc6ff077838275d0 465 Hamap MF_00743 Fumarate hydratase class II [fumC]. 3 458 83.876 T 14-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Amico_0136 09635bdec1218f41dc6ff077838275d0 465 Gene3D G3DSA:1.10.40.30 405 461 1.3E-25 T 14-10-2018 Amico_0136 09635bdec1218f41dc6ff077838275d0 465 Gene3D G3DSA:1.10.275.10 1 134 1.3E-53 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal Amico_0136 09635bdec1218f41dc6ff077838275d0 465 TIGRFAM TIGR00979 fumC_II: fumarate hydratase, class II 3 455 2.6E-220 T 14-10-2018 IPR005677 Fumarate hydratase, class II GO:0004333|GO:0006106|GO:0045239 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Amico_0136 09635bdec1218f41dc6ff077838275d0 465 SUPERFAMILY SSF48557 3 455 1.28E-144 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 Amico_0136 09635bdec1218f41dc6ff077838275d0 465 Gene3D G3DSA:1.20.200.10 135 402 7.0E-107 T 14-10-2018 Amico_0136 09635bdec1218f41dc6ff077838275d0 465 Pfam PF10415 Fumarase C C-terminus 405 456 3.5E-23 T 14-10-2018 IPR018951 Fumarase C, C-terminal GO:0006099|GO:0016829 KEGG: 00020+4.2.1.2|KEGG: 00620+4.2.1.2|KEGG: 00720+4.2.1.2|MetaCyc: PWY-5392|MetaCyc: PWY-561|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7254|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Amico_0136 09635bdec1218f41dc6ff077838275d0 465 PRINTS PR00149 Fumarate lyase superfamily signature 267 294 2.2E-32 T 14-10-2018 IPR000362 Fumarate lyase family Amico_0136 09635bdec1218f41dc6ff077838275d0 465 PRINTS PR00149 Fumarate lyase superfamily signature 130 148 2.2E-32 T 14-10-2018 IPR000362 Fumarate lyase family Amico_0136 09635bdec1218f41dc6ff077838275d0 465 PRINTS PR00149 Fumarate lyase superfamily signature 313 329 2.2E-32 T 14-10-2018 IPR000362 Fumarate lyase family Amico_0136 09635bdec1218f41dc6ff077838275d0 465 PRINTS PR00149 Fumarate lyase superfamily signature 176 194 2.2E-32 T 14-10-2018 IPR000362 Fumarate lyase family Amico_0136 09635bdec1218f41dc6ff077838275d0 465 ProSitePatterns PS00163 Fumarate lyases signature. 313 322 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Amico_0136 09635bdec1218f41dc6ff077838275d0 465 Pfam PF00206 Lyase 11 338 1.7E-107 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal Amico_0136 09635bdec1218f41dc6ff077838275d0 465 PRINTS PR00145 Argininosuccinate lyase family signature 171 191 2.6E-5 T 14-10-2018 Amico_0136 09635bdec1218f41dc6ff077838275d0 465 PRINTS PR00145 Argininosuccinate lyase family signature 313 329 2.6E-5 T 14-10-2018 Amico_0768 b93ddbe2fe9b1d5f8be22c8c1800b78f 149 PRINTS PR00813 Bacterial general secretion pathway protein G signature 46 64 9.7E-8 T 14-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Amico_0768 b93ddbe2fe9b1d5f8be22c8c1800b78f 149 PRINTS PR00813 Bacterial general secretion pathway protein G signature 10 35 9.7E-8 T 14-10-2018 IPR000983 Bacterial general secretion pathway protein G-type pilin GO:0008565|GO:0015627|GO:0015628 Amico_0768 b93ddbe2fe9b1d5f8be22c8c1800b78f 149 TIGRFAM TIGR02532 IV_pilin_GFxxxE: prepilin-type N-terminal cleavage/methylation domain 9 30 3.9E-7 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Amico_0768 b93ddbe2fe9b1d5f8be22c8c1800b78f 149 Gene3D G3DSA:3.30.700.10 11 143 4.0E-8 T 14-10-2018 Amico_0768 b93ddbe2fe9b1d5f8be22c8c1800b78f 149 Pfam PF07963 Prokaryotic N-terminal methylation motif 6 30 5.9E-8 T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Amico_0768 b93ddbe2fe9b1d5f8be22c8c1800b78f 149 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 9 29 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Amico_0768 b93ddbe2fe9b1d5f8be22c8c1800b78f 149 SUPERFAMILY SSF54523 11 71 2.83E-10 T 14-10-2018 Amico_0467 5f100383098419b1fabc6e49775ccd15 318 SUPERFAMILY SSF161098 97 295 1.83E-11 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0467 5f100383098419b1fabc6e49775ccd15 318 Gene3D G3DSA:1.10.3720.10 92 307 3.1E-15 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0467 5f100383098419b1fabc6e49775ccd15 318 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 122 309 3.5E-22 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 Gene3D G3DSA:1.10.150.20 232 339 3.1E-26 T 14-10-2018 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 Gene3D G3DSA:3.30.1360.10 15 221 6.0E-77 T 14-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 Pfam PF01000 RNA polymerase Rpb3/RpoA insert domain 62 151 7.7E-21 T 14-10-2018 IPR011262 DNA-directed RNA polymerase, insert domain GO:0003899|GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 SUPERFAMILY SSF55257 10 227 4.91E-26 T 14-10-2018 IPR036603 RNA polymerase, RBP11-like subunit GO:0006351|GO:0046983 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 SUPERFAMILY SSF47789 263 330 4.19E-20 T 14-10-2018 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 Hamap MF_00059 DNA-directed RNA polymerase subunit alpha [rpoA]. 4 329 33.358 T 14-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 ProDom PD001179 RNA POLYMERASE ALPHA DNA-DIRECTED SUBUNIT CHAIN NUCLEOTIDYLTRANSFERASE TRANSFERASE TRANSCRIPTION TRANSCRIPTASE 268 326 1.0E-6 T 14-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 TIGRFAM TIGR02027 rpoA: DNA-directed RNA polymerase, alpha subunit 22 328 1.6E-101 T 14-10-2018 IPR011773 DNA-directed RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 Gene3D G3DSA:2.170.120.12 51 171 6.0E-77 T 14-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 SUPERFAMILY SSF56553 51 172 2.22E-36 T 14-10-2018 IPR036643 DNA-directed RNA polymerase, insert domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 Pfam PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain 27 220 9.5E-21 T 14-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 SMART SM00662 21 228 4.4E-76 T 14-10-2018 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0656 bef5c117b0965cef28179921dc59b7bd 339 Pfam PF03118 Bacterial RNA polymerase, alpha chain C terminal domain 258 320 1.9E-21 T 14-10-2018 IPR011260 RNA polymerase, alpha subunit, C-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0105 20004bef9783ad7c5498b63386782674 440 TIGRFAM TIGR01945 rnfC: electron transport complex, RnfABCDGE type, C subunit 3 432 8.3E-161 T 14-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Amico_0105 20004bef9783ad7c5498b63386782674 440 SUPERFAMILY SSF46548 324 435 4.97E-19 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Amico_0105 20004bef9783ad7c5498b63386782674 440 Gene3D G3DSA:3.40.50.11540 133 280 2.5E-9 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_0105 20004bef9783ad7c5498b63386782674 440 Hamap MF_00461 Ion-translocating oxidoreductase complex subunit C [rsxC]. 1 440 143.313 T 14-10-2018 IPR010208 Ion-translocating oxidoreductase complex, subunit RnfC/RsxC GO:0009055|GO:0016020|GO:0051539 Amico_0105 20004bef9783ad7c5498b63386782674 440 SUPERFAMILY SSF142019 87 293 1.14E-53 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_0105 20004bef9783ad7c5498b63386782674 440 Gene3D G3DSA:3.30.70.20 360 419 1.8E-8 T 14-10-2018 Amico_0105 20004bef9783ad7c5498b63386782674 440 Pfam PF13187 4Fe-4S dicluster domain 366 418 5.4E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_0105 20004bef9783ad7c5498b63386782674 440 Pfam PF13375 RnfC Barrel sandwich hybrid domain 5 103 6.4E-35 T 14-10-2018 IPR026902 RnfC Barrel sandwich hybrid domain Amico_0105 20004bef9783ad7c5498b63386782674 440 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 128 272 8.9E-48 T 14-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_0105 20004bef9783ad7c5498b63386782674 440 Pfam PF10531 SLBB domain 286 334 9.3E-13 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_0105 20004bef9783ad7c5498b63386782674 440 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 366 377 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_0105 20004bef9783ad7c5498b63386782674 440 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 405 416 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_0832 f427faf0222cbf0a9aff771a04fa973a 370 Hamap MF_00973 Gluconeogenesis factor. 50 366 33.465 T 14-10-2018 IPR010119 Gluconeogenesis factor Amico_0832 f427faf0222cbf0a9aff771a04fa973a 370 Pfam PF01933 Uncharacterised protein family UPF0052 54 339 1.6E-92 T 14-10-2018 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 Amico_0832 f427faf0222cbf0a9aff771a04fa973a 370 Gene3D G3DSA:3.40.50.12300 34 370 4.6E-115 T 14-10-2018 IPR038136 Gluconeogenesis factor superfamily Amico_0832 f427faf0222cbf0a9aff771a04fa973a 370 TIGRFAM TIGR01826 CofD_related: conserved hypothetical protein 54 364 1.8E-105 T 14-10-2018 IPR010119 Gluconeogenesis factor Amico_0832 f427faf0222cbf0a9aff771a04fa973a 370 SUPERFAMILY SSF142338 51 361 2.22E-89 T 14-10-2018 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 PRINTS PR00415 Aconitase family signature 203 216 1.2E-14 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 PRINTS PR00415 Aconitase family signature 351 364 1.2E-14 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 PRINTS PR00415 Aconitase family signature 113 126 1.2E-14 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 PRINTS PR00415 Aconitase family signature 127 142 1.2E-14 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 PRINTS PR00415 Aconitase family signature 189 202 1.2E-14 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 Pfam PF00330 Aconitase family (aconitate hydratase) 9 410 2.1E-90 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 Hamap MF_01027 3-isopropylmalate dehydratase large subunit [leuC]. 5 418 46.494 T 14-10-2018 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 Gene3D G3DSA:3.30.499.20 6 269 1.9E-94 T 14-10-2018 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 TIGRFAM TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit 5 417 3.5E-165 T 14-10-2018 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 ProSitePatterns PS00450 Aconitase family signature 1. 291 307 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 SUPERFAMILY SSF53732 2 422 8.63E-136 T 14-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 TIGRFAM TIGR01343 hacA_fam: homoaconitate hydratase family protein 6 416 1.2E-165 T 14-10-2018 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit GO:0008652|GO:0016836|GO:0051539 KEGG: 00290+4.2.1.33 Amico_1704 f61b57ad371df7781784b0a6e1b82190 425 Gene3D G3DSA:3.30.499.10 272 424 2.9E-56 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 SUPERFAMILY SSF82693 43 136 6.28E-24 T 14-10-2018 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 Gene3D G3DSA:1.20.1640.10 13 505 4.7E-294 T 14-10-2018 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 Gene3D G3DSA:1.20.1640.10 506 1005 4.7E-294 T 14-10-2018 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 Gene3D G3DSA:3.30.70.1320 137 327 4.7E-294 T 14-10-2018 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 SUPERFAMILY SSF82866 291 489 2.09E-42 T 14-10-2018 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 SUPERFAMILY SSF82693 139 324 8.2E-17 T 14-10-2018 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 Gene3D G3DSA:3.30.70.1430 560 653 4.7E-294 T 14-10-2018 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 Gene3D G3DSA:3.30.70.1430 43 799 4.7E-294 T 14-10-2018 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 Gene3D G3DSA:3.30.2090.10 704 791 4.7E-294 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 Pfam PF00873 AcrB/AcrD/AcrF family 7 1009 9.3E-237 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 SUPERFAMILY SSF82693 559 650 4.97E-11 T 14-10-2018 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 PRINTS PR00702 Acriflavin resistance protein family signature 13 37 1.8E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 1.8E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 PRINTS PR00702 Acriflavin resistance protein family signature 464 487 1.8E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 PRINTS PR00702 Acriflavin resistance protein family signature 386 410 1.8E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 PRINTS PR00702 Acriflavin resistance protein family signature 358 379 1.8E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 PRINTS PR00702 Acriflavin resistance protein family signature 439 462 1.8E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 PRINTS PR00702 Acriflavin resistance protein family signature 545 562 1.8E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 PRINTS PR00702 Acriflavin resistance protein family signature 41 59 1.8E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 Gene3D G3DSA:3.30.70.1440 654 848 4.7E-294 T 14-10-2018 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 Gene3D G3DSA:3.30.2090.10 180 270 4.7E-294 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 SUPERFAMILY SSF82714 705 790 1.24E-11 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 SUPERFAMILY SSF82866 789 1014 3.01E-50 T 14-10-2018 Amico_0352 d0e4d08059d581030ffe31e212820fa8 1017 SUPERFAMILY SSF82714 184 266 1.09E-12 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_1436 0e2695ec88ffa6c81e40cec6cbaa15e7 62 ProSitePatterns PS01181 Ribosomal protein S21 signature. 13 25 - T 14-10-2018 IPR018278 Ribosomal protein S21, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_1436 0e2695ec88ffa6c81e40cec6cbaa15e7 62 Hamap MF_00358 30S ribosomal protein S21 [rpsU]. 1 57 23.677 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1436 0e2695ec88ffa6c81e40cec6cbaa15e7 62 TIGRFAM TIGR00030 S21p: ribosomal protein bS21 4 57 3.0E-19 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1436 0e2695ec88ffa6c81e40cec6cbaa15e7 62 Pfam PF01165 Ribosomal protein S21 4 57 5.8E-20 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1436 0e2695ec88ffa6c81e40cec6cbaa15e7 62 ProDom PD005521 RIBOSOMAL S21 RIBONUCLEOPROTEIN 30S S21P A SSU SUBUNIT SEQUENCING DIRECT 16 42 2.0E-6 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1436 0e2695ec88ffa6c81e40cec6cbaa15e7 62 PRINTS PR00976 Ribosomal protein S21 family signature 5 13 5.8E-11 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1436 0e2695ec88ffa6c81e40cec6cbaa15e7 62 PRINTS PR00976 Ribosomal protein S21 family signature 13 22 5.8E-11 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1436 0e2695ec88ffa6c81e40cec6cbaa15e7 62 PRINTS PR00976 Ribosomal protein S21 family signature 25 35 5.8E-11 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1436 0e2695ec88ffa6c81e40cec6cbaa15e7 62 PRINTS PR00976 Ribosomal protein S21 family signature 37 47 5.8E-11 T 14-10-2018 IPR001911 Ribosomal protein S21 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1436 0e2695ec88ffa6c81e40cec6cbaa15e7 62 Gene3D G3DSA:1.20.5.1150 16 54 2.4E-15 T 14-10-2018 IPR038380 Ribosomal protein S21 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1738 302bad14c9ce1c77e2a30379e3022c73 169 Gene3D G3DSA:1.10.10.10 34 168 7.1E-10 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1738 302bad14c9ce1c77e2a30379e3022c73 169 SUPERFAMILY SSF88659 117 164 8.41E-6 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Amico_1738 302bad14c9ce1c77e2a30379e3022c73 169 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 13 161 1.2E-16 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Amico_1738 302bad14c9ce1c77e2a30379e3022c73 169 Pfam PF04542 Sigma-70 region 2 17 76 5.2E-7 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Amico_1738 302bad14c9ce1c77e2a30379e3022c73 169 SUPERFAMILY SSF88946 6 77 1.44E-9 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Amico_1650 d201d1e9271152d290034244fad36324 347 Gene3D G3DSA:3.60.70.12 5 344 1.5E-131 T 14-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Amico_1650 d201d1e9271152d290034244fad36324 347 SUPERFAMILY SSF56266 5 335 2.28E-97 T 14-10-2018 IPR016117 ArgJ-like domain superfamily KEGG: 00220+2.3.1.35+2.3.1.1|MetaCyc: PWY-5154 Amico_1650 d201d1e9271152d290034244fad36324 347 Pfam PF03576 Peptidase family S58 23 335 6.3E-112 T 14-10-2018 IPR005321 Peptidase S58, DmpA Amico_0682 88133911150ecee0c98093ee402681f6 216 TIGRFAM TIGR00070 hisG: ATP phosphoribosyltransferase 2 186 2.1E-49 T 14-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Amico_0682 88133911150ecee0c98093ee402681f6 216 SUPERFAMILY SSF53850 2 206 3.26E-51 T 14-10-2018 Amico_0682 88133911150ecee0c98093ee402681f6 216 Pfam PF01634 ATP phosphoribosyltransferase 49 205 4.5E-43 T 14-10-2018 IPR013820 ATP phosphoribosyltransferase, catalytic domain GO:0000105|GO:0003879|GO:0005737 KEGG: 00340+2.4.2.17 Amico_0682 88133911150ecee0c98093ee402681f6 216 Gene3D G3DSA:3.40.190.10 3 198 1.7E-58 T 14-10-2018 Amico_0682 88133911150ecee0c98093ee402681f6 216 Gene3D G3DSA:3.40.190.10 90 178 1.7E-58 T 14-10-2018 Amico_0682 88133911150ecee0c98093ee402681f6 216 ProSitePatterns PS01316 ATP phosphoribosyltransferase signature. 145 166 - T 14-10-2018 IPR018198 ATP phosphoribosyltransferase, conserved site GO:0003879 KEGG: 00340+2.4.2.17 Amico_1212 8a770b6fb415088d916462efc54b164a 235 Pfam PF01144 Coenzyme A transferase 9 225 4.3E-62 T 14-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Amico_1212 8a770b6fb415088d916462efc54b164a 235 TIGRFAM TIGR02429 pcaI_scoA_fam: 3-oxoacid CoA-transferase, A subunit 7 225 3.6E-64 T 14-10-2018 IPR012792 3-oxoacid CoA-transferase, subunit A GO:0008410 Reactome: R-HSA-77108 Amico_1212 8a770b6fb415088d916462efc54b164a 235 SUPERFAMILY SSF100950 7 229 2.83E-74 T 14-10-2018 IPR037171 NagB/RpiA transferase-like Amico_1212 8a770b6fb415088d916462efc54b164a 235 SMART SM00882 9 226 7.7E-70 T 14-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Amico_1212 8a770b6fb415088d916462efc54b164a 235 Gene3D G3DSA:3.40.1080.10 7 228 8.7E-74 T 14-10-2018 Amico_1039 97c76da75170be2a119029e141defa6c 345 Gene3D G3DSA:3.90.1150.10 5 337 3.1E-88 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1039 97c76da75170be2a119029e141defa6c 345 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 199 208 - T 14-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 Amico_1039 97c76da75170be2a119029e141defa6c 345 Gene3D G3DSA:3.40.640.10 30 249 3.1E-88 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1039 97c76da75170be2a119029e141defa6c 345 SUPERFAMILY SSF53383 4 340 1.71E-63 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1039 97c76da75170be2a119029e141defa6c 345 Pfam PF00155 Aminotransferase class I and II 6 330 5.5E-45 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_1443 a48b6d297b2e76b13ecac0a06ced061d 339 SUPERFAMILY SSF55781 71 332 5.1E-43 T 14-10-2018 Amico_1443 a48b6d297b2e76b13ecac0a06ced061d 339 PIRSF PIRSF005485 1 339 1.7E-78 T 14-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 Amico_1443 a48b6d297b2e76b13ecac0a06ced061d 339 Gene3D G3DSA:3.30.450.40 104 332 5.3E-30 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_1443 a48b6d297b2e76b13ecac0a06ced061d 339 Pfam PF01628 HrcA protein C terminal domain 104 322 5.3E-46 T 14-10-2018 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal GO:0003677|GO:0006355 Amico_1443 a48b6d297b2e76b13ecac0a06ced061d 339 Gene3D G3DSA:1.10.10.10 1 84 1.1E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1443 a48b6d297b2e76b13ecac0a06ced061d 339 Hamap MF_00081 Heat-inducible transcription repressor HrcA [hrcA]. 1 329 24.239 T 14-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 Amico_1443 a48b6d297b2e76b13ecac0a06ced061d 339 TIGRFAM TIGR00331 hrcA: heat-inducible transcription repressor HrcA 3 333 2.3E-73 T 14-10-2018 IPR002571 Heat-inducible transcription repressor HrcA GO:0003677|GO:0006355 Amico_1443 a48b6d297b2e76b13ecac0a06ced061d 339 SUPERFAMILY SSF46785 1 83 5.9E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1443 a48b6d297b2e76b13ecac0a06ced061d 339 Gene3D G3DSA:3.30.390.60 128 228 5.3E-30 T 14-10-2018 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 PRINTS PR00315 GTP-binding elongation factor signature 9 22 4.4E-8 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 PRINTS PR00315 GTP-binding elongation factor signature 77 88 4.4E-8 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 PRINTS PR00315 GTP-binding elongation factor signature 114 123 4.4E-8 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 PRINTS PR00315 GTP-binding elongation factor signature 61 71 4.4E-8 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 Gene3D G3DSA:1.10.10.2770 447 578 1.7E-7 T 14-10-2018 Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 SUPERFAMILY SSF46785 445 515 2.64E-6 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 Gene3D G3DSA:1.10.10.10 580 636 2.3E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 SUPERFAMILY SSF50447 180 266 2.5E-22 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 Gene3D G3DSA:3.40.50.300 7 175 1.1E-47 T 14-10-2018 Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 161 4.6E-12 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 Pfam PF00009 Elongation factor Tu GTP binding domain 10 172 1.5E-32 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 TIGRFAM TIGR00475 selB: selenocysteine-specific translation elongation factor 9 635 1.3E-108 T 14-10-2018 IPR004535 Translation elongation factor, selenocysteine-specific GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 SUPERFAMILY SSF50465 272 364 2.48E-22 T 14-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 SUPERFAMILY SSF46785 594 635 2.81E-10 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 Pfam PF09107 Elongation factor SelB, winged helix 593 635 1.2E-17 T 14-10-2018 IPR015191 Translation elongation factor SelB, winged helix, type 3 GO:0001514|GO:0003723|GO:0003746|GO:0005525|GO:0005737 Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 33 48 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 Pfam PF03144 Elongation factor Tu domain 2 198 265 5.9E-10 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 SUPERFAMILY SSF52540 5 199 5.95E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1156 a76ea4f06b59fda637893b5ffcd2c01c 646 Gene3D G3DSA:2.40.30.10 181 294 2.0E-28 T 14-10-2018 Amico_1818 3c1bbc049c6aa649bfe083ef4af5d191 516 SUPERFAMILY SSF74650 35 395 1.95E-149 T 14-10-2018 IPR011013 Galactose mutarotase-like domain superfamily GO:0003824|GO:0005975|GO:0030246 Amico_1818 3c1bbc049c6aa649bfe083ef4af5d191 516 Gene3D G3DSA:2.60.40.10 403 516 1.1E-19 T 14-10-2018 IPR013783 Immunoglobulin-like fold Amico_1818 3c1bbc049c6aa649bfe083ef4af5d191 516 Gene3D G3DSA:2.70.98.10 33 402 1.7E-160 T 14-10-2018 IPR014718 Glycoside hydrolase-type carbohydrate-binding GO:0030246 Amico_1818 3c1bbc049c6aa649bfe083ef4af5d191 516 SUPERFAMILY SSF81296 404 516 9.8E-11 T 14-10-2018 IPR014756 Immunoglobulin E-set Amico_1818 3c1bbc049c6aa649bfe083ef4af5d191 516 PIRSF PIRSF006281 19 516 1.1E-177 T 14-10-2018 IPR014438 Glucan biosynthesis protein MdoG/MdoD Amico_1818 3c1bbc049c6aa649bfe083ef4af5d191 516 Pfam PF04349 Periplasmic glucan biosynthesis protein, MdoG 37 513 4.3E-184 T 14-10-2018 IPR007444 Glucan biosynthesis, periplasmic, MdoG C-terminal GO:0016051|GO:0042597 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 TIGRFAM TIGR02086 IPMI_arch: 3-isopropylmalate dehydratase, large subunit 4 416 5.7E-151 T 14-10-2018 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 Pfam PF00330 Aconitase family (aconitate hydratase) 9 409 3.2E-88 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 Hamap MF_01027 3-isopropylmalate dehydratase large subunit [leuC]. 3 417 45.579 T 14-10-2018 IPR011826 Homoaconitase/3-isopropylmalate dehydratase, large subunit, prokaryotic GO:0003861|GO:0009098|GO:0051539 KEGG: 00290+4.2.1.33 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 ProSitePatterns PS00450 Aconitase family signature 1. 290 306 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 TIGRFAM TIGR01343 hacA_fam: homoaconitate hydratase family protein 4 415 9.5E-159 T 14-10-2018 IPR006251 Homoaconitase/3-isopropylmalate dehydratase, large subunit GO:0008652|GO:0016836|GO:0051539 KEGG: 00290+4.2.1.33 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 SUPERFAMILY SSF53732 3 418 4.97E-132 T 14-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 Gene3D G3DSA:3.30.499.20 4 268 2.6E-83 T 14-10-2018 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 PRINTS PR00415 Aconitase family signature 126 141 1.6E-15 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 PRINTS PR00415 Aconitase family signature 112 125 1.6E-15 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 PRINTS PR00415 Aconitase family signature 350 363 1.6E-15 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 PRINTS PR00415 Aconitase family signature 202 215 1.6E-15 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 PRINTS PR00415 Aconitase family signature 188 201 1.6E-15 T 14-10-2018 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain KEGG: 00290+4.2.1.33 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 Gene3D G3DSA:3.30.499.10 271 427 9.2E-57 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Amico_0100 fd3b62e1200da8722c99fddfc01e5ea3 429 ProSitePatterns PS01244 Aconitase family signature 2. 350 363 - T 14-10-2018 IPR018136 Aconitase family, 4Fe-4S cluster binding site KEGG: 00290+4.2.1.33 Amico_0195 053897338c061d2b8f63d13b1fbba077 304 SUPERFAMILY SSF53850 91 276 8.36E-32 T 14-10-2018 Amico_0195 053897338c061d2b8f63d13b1fbba077 304 Pfam PF03466 LysR substrate binding domain 91 276 7.9E-35 T 14-10-2018 IPR005119 LysR, substrate-binding Amico_0195 053897338c061d2b8f63d13b1fbba077 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 3.0E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Amico_0195 053897338c061d2b8f63d13b1fbba077 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 3.0E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Amico_0195 053897338c061d2b8f63d13b1fbba077 304 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 3.0E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Amico_0195 053897338c061d2b8f63d13b1fbba077 304 SUPERFAMILY SSF46785 1 84 7.44E-23 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0195 053897338c061d2b8f63d13b1fbba077 304 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 1.4E-21 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Amico_0195 053897338c061d2b8f63d13b1fbba077 304 Gene3D G3DSA:3.40.190.10 167 271 1.9E-32 T 14-10-2018 Amico_0195 053897338c061d2b8f63d13b1fbba077 304 Gene3D G3DSA:1.10.10.10 1 90 7.1E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0195 053897338c061d2b8f63d13b1fbba077 304 Gene3D G3DSA:3.40.190.10 91 277 1.9E-32 T 14-10-2018 Amico_0629 92fcfb6b081dfb3094692f0b40eb3e5a 98 Hamap MF_01369_B 50S ribosomal protein L23 [rplW]. 6 95 22.748 T 14-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Amico_0629 92fcfb6b081dfb3094692f0b40eb3e5a 98 SUPERFAMILY SSF54189 6 95 5.4E-32 T 14-10-2018 IPR012678 Ribosomal protein L23/L15e core domain superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0629 92fcfb6b081dfb3094692f0b40eb3e5a 98 Gene3D G3DSA:3.30.70.330 3 97 1.0E-35 T 14-10-2018 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily Amico_0629 92fcfb6b081dfb3094692f0b40eb3e5a 98 Pfam PF00276 Ribosomal protein L23 7 92 6.5E-34 T 14-10-2018 IPR013025 Ribosomal protein L25/L23 GO:0003735|GO:0005840|GO:0006412 Amico_1402 3c6b351aa309b515f5f848763fe14bf5 382 Gene3D G3DSA:1.10.10.2140 315 364 3.6E-22 T 14-10-2018 Amico_1402 3c6b351aa309b515f5f848763fe14bf5 382 TIGRFAM TIGR00075 hypD: hydrogenase expression/formation protein HypD 18 364 9.5E-134 T 14-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 Amico_1402 3c6b351aa309b515f5f848763fe14bf5 382 Gene3D G3DSA:3.40.50.11750 22 260 1.6E-110 T 14-10-2018 Amico_1402 3c6b351aa309b515f5f848763fe14bf5 382 Pfam PF01924 Hydrogenase formation hypA family 17 363 1.9E-143 T 14-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 Amico_1402 3c6b351aa309b515f5f848763fe14bf5 382 PIRSF PIRSF005622 8 368 1.8E-141 T 14-10-2018 IPR002780 Hydrogenase formation HypD protein GO:0046872 Amico_1402 3c6b351aa309b515f5f848763fe14bf5 382 Gene3D G3DSA:3.40.50.11740 63 300 1.6E-110 T 14-10-2018 Amico_1589 485ba1797594cb3b44b98b86cc7c0ea0 158 SUPERFAMILY SSF117856 7 150 7.85E-26 T 14-10-2018 Amico_1589 485ba1797594cb3b44b98b86cc7c0ea0 158 Gene3D G3DSA:3.30.1330.80 8 158 8.7E-29 T 14-10-2018 Amico_1589 485ba1797594cb3b44b98b86cc7c0ea0 158 Pfam PF03479 Domain of unknown function (DUF296) 10 133 1.5E-18 T 14-10-2018 IPR005175 PPC domain Amico_1456 6cb9c4bad4aa9cdb23551730efccdf20 402 Gene3D G3DSA:3.30.750.44 62 344 2.1E-91 T 14-10-2018 Amico_1456 6cb9c4bad4aa9cdb23551730efccdf20 402 SUPERFAMILY SSF50156 99 189 7.14E-17 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Amico_1456 6cb9c4bad4aa9cdb23551730efccdf20 402 TIGRFAM TIGR00225 prc: C-terminal processing peptidase 62 374 5.0E-99 T 14-10-2018 IPR004447 C-terminal-processing peptidase S41A GO:0006508|GO:0008236 Amico_1456 6cb9c4bad4aa9cdb23551730efccdf20 402 SMART SM00245 181 369 4.2E-72 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Amico_1456 6cb9c4bad4aa9cdb23551730efccdf20 402 Pfam PF13180 PDZ domain 108 184 1.7E-9 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Amico_1456 6cb9c4bad4aa9cdb23551730efccdf20 402 SUPERFAMILY SSF52096 62 377 1.61E-72 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Amico_1456 6cb9c4bad4aa9cdb23551730efccdf20 402 Gene3D G3DSA:3.90.226.10 196 366 2.1E-91 T 14-10-2018 Amico_1456 6cb9c4bad4aa9cdb23551730efccdf20 402 Pfam PF03572 Peptidase family S41 206 368 7.4E-53 T 14-10-2018 IPR005151 Tail specific protease GO:0006508|GO:0008236 Reactome: R-HSA-2187335|Reactome: R-HSA-2453902 Amico_1456 6cb9c4bad4aa9cdb23551730efccdf20 402 SMART SM00228 108 179 2.3E-11 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Amico_1456 6cb9c4bad4aa9cdb23551730efccdf20 402 Gene3D G3DSA:2.30.42.10 108 195 2.1E-91 T 14-10-2018 Amico_0817 afd2588cfc61f7e1b82917a462ce86d6 457 Pfam PF02875 Mur ligase family, glutamate ligase domain 315 382 2.3E-5 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Amico_0817 afd2588cfc61f7e1b82917a462ce86d6 457 Hamap MF_00639 UDP-N-acetylmuramoylalanine--D-glutamate ligase [murD]. 11 453 30.338 T 14-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Amico_0817 afd2588cfc61f7e1b82917a462ce86d6 457 SUPERFAMILY SSF53623 105 311 1.2E-45 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Amico_0817 afd2588cfc61f7e1b82917a462ce86d6 457 Gene3D G3DSA:3.40.50.720 6 99 1.7E-15 T 14-10-2018 Amico_0817 afd2588cfc61f7e1b82917a462ce86d6 457 Gene3D G3DSA:3.90.190.20 319 456 1.7E-40 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Amico_0817 afd2588cfc61f7e1b82917a462ce86d6 457 Gene3D G3DSA:3.40.1190.10 100 312 1.5E-50 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Amico_0817 afd2588cfc61f7e1b82917a462ce86d6 457 TIGRFAM TIGR01087 murD: UDP-N-acetylmuramoylalanine--D-glutamate ligase 12 451 9.2E-110 T 14-10-2018 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase GO:0005524|GO:0005737|GO:0008360|GO:0008764|GO:0051301 KEGG: 00471+6.3.2.9|KEGG: 00550+6.3.2.9|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Amico_0817 afd2588cfc61f7e1b82917a462ce86d6 457 Pfam PF08245 Mur ligase middle domain 116 292 1.6E-28 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Amico_0817 afd2588cfc61f7e1b82917a462ce86d6 457 SUPERFAMILY SSF53244 314 453 1.33E-37 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Amico_0817 afd2588cfc61f7e1b82917a462ce86d6 457 SUPERFAMILY SSF51984 11 99 3.79E-12 T 14-10-2018 Amico_1460 0f316ed7db9ca3cd5a493f56e5a75d72 317 Pfam PF02780 Transketolase, C-terminal domain 185 304 9.2E-28 T 14-10-2018 IPR033248 Transketolase, C-terminal domain Amico_1460 0f316ed7db9ca3cd5a493f56e5a75d72 317 ProSitePatterns PS00802 Transketolase signature 2. 115 131 - T 14-10-2018 IPR020826 Transketolase binding site KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Amico_1460 0f316ed7db9ca3cd5a493f56e5a75d72 317 Gene3D G3DSA:3.40.50.920 184 316 2.6E-37 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1460 0f316ed7db9ca3cd5a493f56e5a75d72 317 SUPERFAMILY SSF52518 6 174 1.82E-46 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1460 0f316ed7db9ca3cd5a493f56e5a75d72 317 Pfam PF02779 Transketolase, pyrimidine binding domain 8 171 9.3E-30 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Amico_1460 0f316ed7db9ca3cd5a493f56e5a75d72 317 SUPERFAMILY SSF52922 180 311 6.81E-30 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1460 0f316ed7db9ca3cd5a493f56e5a75d72 317 Gene3D G3DSA:3.40.50.970 1 181 2.8E-51 T 14-10-2018 Amico_1460 0f316ed7db9ca3cd5a493f56e5a75d72 317 SMART SM00861 7 172 9.4E-40 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Amico_0321 090cb943e31728ed344377b7606f97b0 64 Pfam PF09962 Uncharacterized conserved protein (DUF2196) 3 62 2.2E-30 T 14-10-2018 IPR019240 Protein of unknown function DUF2196 Amico_0321 090cb943e31728ed344377b7606f97b0 64 TIGRFAM TIGR03833 TIGR03833: conserved hypothetical protein 3 62 3.3E-32 T 14-10-2018 IPR019240 Protein of unknown function DUF2196 Amico_0594 55ec5e38ed3a1db3c3192550e110b137 483 SUPERFAMILY SSF102114 111 400 2.49E-50 T 14-10-2018 Amico_0594 55ec5e38ed3a1db3c3192550e110b137 483 Gene3D G3DSA:3.20.20.70 111 475 3.5E-40 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0594 55ec5e38ed3a1db3c3192550e110b137 483 Pfam PF13353 4Fe-4S single cluster domain 122 210 5.5E-7 T 14-10-2018 Amico_0594 55ec5e38ed3a1db3c3192550e110b137 483 Pfam PF13186 Iron-sulfur cluster-binding domain 336 385 5.7E-5 T 14-10-2018 IPR023885 4Fe4S-binding SPASM domain Amico_0594 55ec5e38ed3a1db3c3192550e110b137 483 Pfam PF04055 Radical SAM superfamily 119 247 8.6E-14 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_0842 d82b2113c7c35ee67e4acdd2a2fac10d 215 Pfam PF01467 Cytidylyltransferase-like 15 185 1.9E-29 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Amico_0842 d82b2113c7c35ee67e4acdd2a2fac10d 215 Gene3D G3DSA:3.40.50.620 8 210 7.7E-59 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0842 d82b2113c7c35ee67e4acdd2a2fac10d 215 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 13 75 1.1E-8 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Amico_0842 d82b2113c7c35ee67e4acdd2a2fac10d 215 SUPERFAMILY SSF52374 10 212 3.13E-52 T 14-10-2018 Amico_0842 d82b2113c7c35ee67e4acdd2a2fac10d 215 Hamap MF_00244 Probable nicotinate-nucleotide adenylyltransferase [nadD]. 11 211 31.29 T 14-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Amico_0842 d82b2113c7c35ee67e4acdd2a2fac10d 215 TIGRFAM TIGR00482 TIGR00482: nicotinate (nicotinamide) nucleotide adenylyltransferase 15 210 1.6E-52 T 14-10-2018 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase GO:0009435|GO:0016779 KEGG: 00760+2.7.7.18|MetaCyc: PWY-5381|MetaCyc: PWY-5653|MetaCyc: PWY-7761|Reactome: R-HSA-196807 Amico_1575 1d4d52367e76cfde378fe57228364668 370 Gene3D G3DSA:2.40.50.140 287 352 7.0E-10 T 14-10-2018 Amico_1575 1d4d52367e76cfde378fe57228364668 370 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1575 1d4d52367e76cfde378fe57228364668 370 Gene3D G3DSA:3.40.50.300 9 227 4.0E-66 T 14-10-2018 Amico_1575 1d4d52367e76cfde378fe57228364668 370 SUPERFAMILY SSF52540 4 249 8.19E-86 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1575 1d4d52367e76cfde378fe57228364668 370 Pfam PF00005 ABC transporter 26 167 4.9E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1575 1d4d52367e76cfde378fe57228364668 370 SMART SM00382 34 217 1.9E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1575 1d4d52367e76cfde378fe57228364668 370 Gene3D G3DSA:2.40.50.940 228 361 7.0E-10 T 14-10-2018 Amico_1575 1d4d52367e76cfde378fe57228364668 370 SUPERFAMILY SSF50331 243 361 3.91E-13 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Amico_1575 1d4d52367e76cfde378fe57228364668 370 Pfam PF08402 TOBE domain 281 360 5.2E-6 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 SUPERFAMILY SSF56784 316 671 3.25E-54 T 14-10-2018 IPR036412 HAD-like superfamily Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 Pfam PF00690 Cation transporter/ATPase, N-terminus 15 61 5.7E-6 T 14-10-2018 IPR004014 Cation-transporting P-type ATPase, N-terminal Reactome: R-HSA-936837 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 Pfam PF00689 Cation transporting ATPase, C-terminus 675 846 5.1E-30 T 14-10-2018 IPR006068 Cation-transporting P-type ATPase, C-terminal Reactome: R-HSA-936837 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 Pfam PF00702 haloacid dehalogenase-like hydrolase 316 603 4.9E-22 T 14-10-2018 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 Gene3D G3DSA:3.40.50.1000 497 635 9.2E-108 T 14-10-2018 IPR023214 HAD superfamily Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 Gene3D G3DSA:3.40.50.1000 315 327 1.1E-90 T 14-10-2018 IPR023214 HAD superfamily Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 210 340 7.1E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 561 671 1.4E-28 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 Gene3D G3DSA:1.20.1110.10 636 845 9.2E-108 T 14-10-2018 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 Gene3D G3DSA:2.70.150.10 14 221 1.1E-90 T 14-10-2018 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 Pfam PF00122 E1-E2 ATPase 104 297 3.3E-44 T 14-10-2018 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 Gene3D G3DSA:1.20.1110.10 47 314 1.1E-90 T 14-10-2018 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 622 647 3.3E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 562 578 3.3E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 590 606 3.3E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 448 466 3.3E-19 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 Gene3D G3DSA:3.40.1110.10 410 496 9.2E-108 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 Gene3D G3DSA:3.40.1110.10 328 346 1.1E-90 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 SUPERFAMILY SSF81653 106 216 4.32E-26 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 614 626 2.8E-37 T 14-10-2018 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 489 500 2.8E-37 T 14-10-2018 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 318 332 2.8E-37 T 14-10-2018 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 154 168 2.8E-37 T 14-10-2018 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 511 521 2.8E-37 T 14-10-2018 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 590 609 2.8E-37 T 14-10-2018 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 SUPERFAMILY SSF81665 10 848 1.83E-89 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Amico_0462 a3207e892645bd2248eeba5f9fbf43e7 866 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 320 326 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Amico_1654 7f0c7dce3a8f9f4265f4b3ea98da429a 395 Pfam PF07687 Peptidase dimerisation domain 191 288 3.1E-10 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1654 7f0c7dce3a8f9f4265f4b3ea98da429a 395 Pfam PF01546 Peptidase family M20/M25/M40 76 391 1.9E-33 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1654 7f0c7dce3a8f9f4265f4b3ea98da429a 395 SUPERFAMILY SSF53187 4 393 6.6E-77 T 14-10-2018 Amico_1654 7f0c7dce3a8f9f4265f4b3ea98da429a 395 SUPERFAMILY SSF55031 188 302 3.01E-30 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1654 7f0c7dce3a8f9f4265f4b3ea98da429a 395 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 16 381 5.3E-110 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_1654 7f0c7dce3a8f9f4265f4b3ea98da429a 395 Gene3D G3DSA:3.30.70.360 186 301 1.9E-128 T 14-10-2018 Amico_1654 7f0c7dce3a8f9f4265f4b3ea98da429a 395 PIRSF PIRSF005962 2 395 8.5E-124 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_1654 7f0c7dce3a8f9f4265f4b3ea98da429a 395 Gene3D G3DSA:3.40.630.10 17 379 1.9E-128 T 14-10-2018 Amico_0567 a4371012b10ab056b02ae0df0f56b9bf 582 Pfam PF09992 Phosphodiester glycosidase 440 577 1.4E-24 T 14-10-2018 IPR018711 Phosphodiester glycosidase Amico_0567 a4371012b10ab056b02ae0df0f56b9bf 582 Pfam PF00395 S-layer homology domain 54 93 9.7E-5 T 14-10-2018 IPR001119 S-layer homology domain Amico_0567 a4371012b10ab056b02ae0df0f56b9bf 582 Gene3D G3DSA:3.30.70.1070 196 261 3.6E-6 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Amico_0567 a4371012b10ab056b02ae0df0f56b9bf 582 SUPERFAMILY SSF110997 193 254 1.01E-8 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Amico_0567 a4371012b10ab056b02ae0df0f56b9bf 582 Pfam PF05036 Sporulation related domain 194 262 4.5E-7 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 Amico_0967 174e8e318e5b5a174d94c559b3610efc 316 Gene3D G3DSA:2.40.30.30 170 298 1.2E-35 T 14-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 Amico_0967 174e8e318e5b5a174d94c559b3610efc 316 PIRSF PIRSF004491 1 297 4.1E-87 T 14-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Amico_0967 174e8e318e5b5a174d94c559b3610efc 316 Pfam PF01687 Riboflavin kinase 166 287 1.7E-30 T 14-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 Amico_0967 174e8e318e5b5a174d94c559b3610efc 316 SMART SM00904 165 290 7.6E-43 T 14-10-2018 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26|MetaCyc: PWY-5523|MetaCyc: PWY-6168|MetaCyc: PWY-7863|Reactome: R-HSA-196843 Amico_0967 174e8e318e5b5a174d94c559b3610efc 316 SUPERFAMILY SSF82114 156 291 1.42E-39 T 14-10-2018 IPR023465 Riboflavin kinase domain superfamily GO:0008531|GO:0009231 Reactome: R-HSA-196843 Amico_0967 174e8e318e5b5a174d94c559b3610efc 316 Pfam PF06574 FAD synthetase 4 148 4.7E-34 T 14-10-2018 IPR015864 FAD synthetase GO:0003919|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Amico_0967 174e8e318e5b5a174d94c559b3610efc 316 TIGRFAM TIGR00083 ribF: riboflavin biosynthesis protein RibF 4 289 2.3E-66 T 14-10-2018 IPR002606 Riboflavin kinase, bacterial GO:0003919|GO:0008531|GO:0009231 KEGG: 00740+2.7.1.26+2.7.7.2|MetaCyc: PWY-5523|MetaCyc: PWY-6167|MetaCyc: PWY-6168|MetaCyc: PWY-7863 Amico_0967 174e8e318e5b5a174d94c559b3610efc 316 SUPERFAMILY SSF52374 3 160 1.58E-26 T 14-10-2018 Amico_0967 174e8e318e5b5a174d94c559b3610efc 316 Gene3D G3DSA:3.40.50.620 1 168 4.2E-44 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 SMART SM00387 531 643 6.4E-17 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 Pfam PF14501 GHKL domain 532 634 1.2E-13 T 14-10-2018 IPR032834 Sensor histidine kinase NatK, C-terminal domain Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 41 285 2.5E-23 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 Gene3D G3DSA:3.30.450.20 318 426 2.8E-19 T 14-10-2018 Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 SUPERFAMILY SSF55890 435 481 2.75E-13 T 14-10-2018 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB GO:0000155|GO:0000160|GO:0016772 Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 Gene3D G3DSA:3.40.190.10 153 245 3.8E-23 T 14-10-2018 Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 SMART SM00062 33 287 0.0021 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 Gene3D G3DSA:3.40.190.10 142 283 3.8E-23 T 14-10-2018 Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 Gene3D G3DSA:3.30.565.10 488 640 1.9E-23 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 SUPERFAMILY SSF55874 508 640 3.27E-23 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 Pfam PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain 435 478 1.3E-12 T 14-10-2018 IPR039506 SpoOB, alpha-helical domain Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 SUPERFAMILY SSF55785 330 406 6.07E-9 T 14-10-2018 IPR035965 PAS domain superfamily Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 SUPERFAMILY SSF53850 44 286 3.09E-28 T 14-10-2018 Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 Pfam PF13188 PAS domain 332 379 4.9E-4 T 14-10-2018 IPR000014 PAS domain Amico_0174 ae21a2a35f03194db919cd3dc5e29b9f 649 Gene3D G3DSA:3.40.190.10 40 100 1.9E-6 T 14-10-2018 Amico_0117 573d6b5faf450b20029da397c89b2c80 126 Pfam PF01042 Endoribonuclease L-PSP 9 124 1.9E-45 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Amico_0117 573d6b5faf450b20029da397c89b2c80 126 Gene3D G3DSA:3.30.1330.40 1 126 4.9E-55 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Amico_0117 573d6b5faf450b20029da397c89b2c80 126 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 2 124 1.7E-53 T 14-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 Amico_0117 573d6b5faf450b20029da397c89b2c80 126 SUPERFAMILY SSF55298 1 124 4.24E-47 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Amico_0117 573d6b5faf450b20029da397c89b2c80 126 ProSitePatterns PS01094 Uncharacterized protein family UPF0076 signature. 101 119 - T 14-10-2018 IPR019897 RidA, conserved site Reactome: R-HSA-8849175 Amico_0437 9c6f8aef14d01c11a49e9279573c449f 230 SUPERFAMILY SSF46785 8 80 1.57E-22 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0437 9c6f8aef14d01c11a49e9279573c449f 230 SMART SM00895 86 208 4.3E-15 T 14-10-2018 IPR011711 GntR, C-terminal Amico_0437 9c6f8aef14d01c11a49e9279573c449f 230 SMART SM00345 18 76 2.7E-22 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0437 9c6f8aef14d01c11a49e9279573c449f 230 Pfam PF00392 Bacterial regulatory proteins, gntR family 16 76 6.3E-21 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0437 9c6f8aef14d01c11a49e9279573c449f 230 Pfam PF07729 FCD domain 86 207 5.7E-17 T 14-10-2018 IPR011711 GntR, C-terminal Amico_0437 9c6f8aef14d01c11a49e9279573c449f 230 SUPERFAMILY SSF48008 82 216 2.38E-24 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_0437 9c6f8aef14d01c11a49e9279573c449f 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 36 50 6.7E-7 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0437 9c6f8aef14d01c11a49e9279573c449f 230 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 50 66 6.7E-7 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0437 9c6f8aef14d01c11a49e9279573c449f 230 Gene3D G3DSA:1.10.10.10 5 77 8.1E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0437 9c6f8aef14d01c11a49e9279573c449f 230 Gene3D G3DSA:1.20.120.530 81 220 3.3E-25 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1208 f3ccb501c73b26e119acef698729eacb 225 Pfam PF00196 Bacterial regulatory proteins, luxR family 151 206 5.2E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1208 f3ccb501c73b26e119acef698729eacb 225 SUPERFAMILY SSF52172 3 136 1.05E-30 T 14-10-2018 IPR011006 CheY-like superfamily Amico_1208 f3ccb501c73b26e119acef698729eacb 225 SUPERFAMILY SSF46894 139 213 1.12E-16 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Amico_1208 f3ccb501c73b26e119acef698729eacb 225 SMART SM00448 4 117 2.6E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1208 f3ccb501c73b26e119acef698729eacb 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 4.1E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1208 f3ccb501c73b26e119acef698729eacb 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 4.1E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1208 f3ccb501c73b26e119acef698729eacb 225 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 4.1E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1208 f3ccb501c73b26e119acef698729eacb 225 Pfam PF00072 Response regulator receiver domain 6 117 8.2E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1208 f3ccb501c73b26e119acef698729eacb 225 SMART SM00421 149 206 5.9E-12 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1208 f3ccb501c73b26e119acef698729eacb 225 Gene3D G3DSA:3.40.50.12740 4 212 3.5E-57 T 14-10-2018 Amico_0541 b6e29a59feaecbdd571964d13746d1a4 288 Gene3D G3DSA:3.40.50.10490 94 277 1.6E-30 T 14-10-2018 Amico_0541 b6e29a59feaecbdd571964d13746d1a4 288 Pfam PF01418 Helix-turn-helix domain, rpiR family 6 77 6.7E-16 T 14-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Amico_0541 b6e29a59feaecbdd571964d13746d1a4 288 SUPERFAMILY SSF53697 99 262 3.64E-24 T 14-10-2018 Amico_0541 b6e29a59feaecbdd571964d13746d1a4 288 SUPERFAMILY SSF46689 5 80 4.66E-15 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Amico_0541 b6e29a59feaecbdd571964d13746d1a4 288 Gene3D G3DSA:1.10.10.10 2 79 6.0E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0541 b6e29a59feaecbdd571964d13746d1a4 288 Pfam PF01380 SIS domain 127 246 2.6E-14 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Amico_1060 91c4ae1a2b645e2202681565de294f49 240 Pfam PF00035 Double-stranded RNA binding motif 168 233 2.4E-16 T 14-10-2018 IPR014720 Double-stranded RNA-binding domain Amico_1060 91c4ae1a2b645e2202681565de294f49 240 Hamap MF_00104 Ribonuclease 3 [rnc]. 19 231 27.662 T 14-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Amico_1060 91c4ae1a2b645e2202681565de294f49 240 SMART SM00535 31 160 6.9E-45 T 14-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Amico_1060 91c4ae1a2b645e2202681565de294f49 240 Pfam PF14622 Ribonuclease-III-like 30 154 5.7E-33 T 14-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Amico_1060 91c4ae1a2b645e2202681565de294f49 240 ProSitePatterns PS00517 Ribonuclease III family signature. 53 61 - T 14-10-2018 IPR000999 Ribonuclease III domain GO:0004525|GO:0006396 Reactome: R-HSA-203927 Amico_1060 91c4ae1a2b645e2202681565de294f49 240 Gene3D G3DSA:3.30.160.20 167 233 1.6E-19 T 14-10-2018 Amico_1060 91c4ae1a2b645e2202681565de294f49 240 SMART SM00358 168 235 6.6E-21 T 14-10-2018 IPR014720 Double-stranded RNA-binding domain Amico_1060 91c4ae1a2b645e2202681565de294f49 240 TIGRFAM TIGR02191 RNaseIII: ribonuclease III 19 233 5.1E-67 T 14-10-2018 IPR011907 Ribonuclease III GO:0003723|GO:0004525|GO:0016075 Reactome: R-HSA-203927 Amico_1060 91c4ae1a2b645e2202681565de294f49 240 Gene3D G3DSA:1.10.1520.10 15 156 1.6E-42 T 14-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 Amico_1060 91c4ae1a2b645e2202681565de294f49 240 SUPERFAMILY SSF54768 123 235 5.62E-24 T 14-10-2018 Amico_1060 91c4ae1a2b645e2202681565de294f49 240 SUPERFAMILY SSF69065 11 154 2.09E-43 T 14-10-2018 IPR036389 Ribonuclease III, endonuclease domain superfamily GO:0004525|GO:0006396 Amico_0979 c89bb9e4ade6ba4a2cd94174115cee10 395 SUPERFAMILY SSF69765 231 389 1.96E-41 T 14-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Amico_0979 c89bb9e4ade6ba4a2cd94174115cee10 395 ProSitePatterns PS01295 4-diphosphocytidyl-2C-methyl-D-erythritol synthase signature. 103 110 - T 14-10-2018 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site GO:0003824|GO:0008299 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Amico_0979 c89bb9e4ade6ba4a2cd94174115cee10 395 Hamap MF_00107 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase [ispF]. 231 389 25.168 T 14-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Amico_0979 c89bb9e4ade6ba4a2cd94174115cee10 395 Pfam PF02542 YgbB family 232 387 3.7E-45 T 14-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Amico_0979 c89bb9e4ade6ba4a2cd94174115cee10 395 SUPERFAMILY SSF53448 5 226 3.05E-42 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_0979 c89bb9e4ade6ba4a2cd94174115cee10 395 ProSitePatterns PS01350 2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase signature. 265 280 - T 14-10-2018 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site GO:0008685 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Amico_0979 c89bb9e4ade6ba4a2cd94174115cee10 395 Pfam PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 6 226 2.1E-41 T 14-10-2018 IPR034683 Cytidylyltransferase IspD/TarI GO:0070567 KEGG: 00900+2.7.7.60|MetaCyc: PWY-7560 Amico_0979 c89bb9e4ade6ba4a2cd94174115cee10 395 Gene3D G3DSA:3.90.550.10 1 229 7.3E-54 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_0979 c89bb9e4ade6ba4a2cd94174115cee10 395 TIGRFAM TIGR00151 ispF: 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 232 388 7.9E-38 T 14-10-2018 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Amico_0979 c89bb9e4ade6ba4a2cd94174115cee10 395 Gene3D G3DSA:3.30.1330.50 230 394 1.6E-49 T 14-10-2018 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily GO:0008685|GO:0016114 KEGG: 00900+4.6.1.12|MetaCyc: PWY-7560 Amico_1407 c8a5f36222fa72c55bc3c650168e4a19 695 Gene3D G3DSA:2.40.50.140 47 143 1.4E-18 T 14-10-2018 Amico_1407 c8a5f36222fa72c55bc3c650168e4a19 695 SUPERFAMILY SSF52540 450 650 1.54E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1407 c8a5f36222fa72c55bc3c650168e4a19 695 Pfam PF17191 RecG wedge domain 11 170 1.1E-33 T 14-10-2018 IPR033454 RecG, wedge domain Amico_1407 c8a5f36222fa72c55bc3c650168e4a19 695 Gene3D G3DSA:3.40.50.300 204 448 3.3E-80 T 14-10-2018 Amico_1407 c8a5f36222fa72c55bc3c650168e4a19 695 TIGRFAM TIGR00643 recG: ATP-dependent DNA helicase RecG 28 661 5.7E-224 T 14-10-2018 IPR004609 ATP-dependent DNA helicase RecG GO:0004003|GO:0006281|GO:0006310 Amico_1407 c8a5f36222fa72c55bc3c650168e4a19 695 SMART SM00487 263 457 1.2E-29 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Amico_1407 c8a5f36222fa72c55bc3c650168e4a19 695 SMART SM00490 502 586 2.0E-23 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_1407 c8a5f36222fa72c55bc3c650168e4a19 695 Pfam PF00271 Helicase conserved C-terminal domain 477 586 1.0E-18 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_1407 c8a5f36222fa72c55bc3c650168e4a19 695 SUPERFAMILY SSF50249 8 176 1.54E-39 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1407 c8a5f36222fa72c55bc3c650168e4a19 695 Pfam PF00270 DEAD/DEAH box helicase 291 431 2.3E-19 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Amico_1407 c8a5f36222fa72c55bc3c650168e4a19 695 Gene3D G3DSA:3.40.50.300 455 626 1.2E-58 T 14-10-2018 Amico_1407 c8a5f36222fa72c55bc3c650168e4a19 695 SUPERFAMILY SSF52540 181 451 3.18E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0317 495592fc872545be117f882f62c6be88 176 Pfam PF00466 Ribosomal protein L10 4 97 3.0E-26 T 14-10-2018 IPR001790 Ribosomal protein L10P GO:0005622|GO:0042254 Amico_0317 495592fc872545be117f882f62c6be88 176 Hamap MF_00362 50S ribosomal protein L10 [rplJ]. 1 161 25.429 T 14-10-2018 IPR022973 Ribosomal protein L10 Amico_0317 495592fc872545be117f882f62c6be88 176 Gene3D G3DSA:3.30.70.1730 1 133 1.3E-36 T 14-10-2018 Amico_0317 495592fc872545be117f882f62c6be88 176 SUPERFAMILY SSF160369 2 172 1.44E-50 T 14-10-2018 Amico_0317 495592fc872545be117f882f62c6be88 176 ProDom PD968187 BETA-DEFENSIN ANTIBIOTIC PRECURSOR ANTIMICROBIAL DEFENSIN BETA SIGNAL DEFENSIN BD-32 DEFB-32 10 171 3.0E-10 T 14-10-2018 Amico_0317 495592fc872545be117f882f62c6be88 176 ProSitePatterns PS01109 Ribosomal protein L10 signature. 6 40 - T 14-10-2018 IPR002363 Ribosomal protein L10, eubacterial, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0544 910bf2d39ac34b3974cb769e3a34ea6f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 18 29 1.6E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Amico_0544 910bf2d39ac34b3974cb769e3a34ea6f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 29 39 1.6E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Amico_0544 910bf2d39ac34b3974cb769e3a34ea6f 299 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 39 50 1.6E-9 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Amico_0544 910bf2d39ac34b3974cb769e3a34ea6f 299 Gene3D G3DSA:1.10.10.10 1 91 6.0E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0544 910bf2d39ac34b3974cb769e3a34ea6f 299 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 3 62 8.2E-19 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Amico_0544 910bf2d39ac34b3974cb769e3a34ea6f 299 SUPERFAMILY SSF46785 2 110 2.08E-20 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0544 910bf2d39ac34b3974cb769e3a34ea6f 299 Gene3D G3DSA:3.40.190.290 92 294 7.7E-37 T 14-10-2018 Amico_0544 910bf2d39ac34b3974cb769e3a34ea6f 299 Pfam PF03466 LysR substrate binding domain 87 287 1.2E-38 T 14-10-2018 IPR005119 LysR, substrate-binding Amico_0544 910bf2d39ac34b3974cb769e3a34ea6f 299 SUPERFAMILY SSF53850 87 289 5.27E-37 T 14-10-2018 Amico_1685 25945f16c293d02e59251693dbc2b87e 176 Pfam PF07155 ECF-type riboflavin transporter, S component 6 164 2.1E-18 T 14-10-2018 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 Amico_1685 25945f16c293d02e59251693dbc2b87e 176 Gene3D G3DSA:1.10.1760.20 1 174 3.6E-36 T 14-10-2018 Amico_1685 25945f16c293d02e59251693dbc2b87e 176 TIGRFAM TIGR04518 ECF_S_folT_fam: ECF transporter S component, folate family 6 169 4.6E-34 T 14-10-2018 IPR030949 ECF transporter S component, folate family Amico_0226 d9e493c27a0d740f1eb52035a3ab7950 250 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 250 1.1E-60 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_0226 d9e493c27a0d740f1eb52035a3ab7950 250 SMART SM00062 30 250 4.1E-66 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_0226 d9e493c27a0d740f1eb52035a3ab7950 250 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 53 66 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site Amico_0226 d9e493c27a0d740f1eb52035a3ab7950 250 SMART SM00079 30 250 0.0032 T 14-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 Amico_0226 d9e493c27a0d740f1eb52035a3ab7950 250 Gene3D G3DSA:3.40.190.10 114 214 4.8E-69 T 14-10-2018 Amico_0226 d9e493c27a0d740f1eb52035a3ab7950 250 SUPERFAMILY SSF53850 1 249 8.89E-66 T 14-10-2018 Amico_0226 d9e493c27a0d740f1eb52035a3ab7950 250 Gene3D G3DSA:3.40.190.10 28 249 4.8E-69 T 14-10-2018 Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 Gene3D G3DSA:3.40.190.10 495 590 2.9E-8 T 14-10-2018 Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 SUPERFAMILY SSF63867 337 405 7.06E-9 T 14-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 Pfam PF12727 PBP superfamily domain 437 616 1.4E-55 T 14-10-2018 IPR024370 PBP domain Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 SUPERFAMILY SSF63882 9 165 1.44E-33 T 14-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 Gene3D G3DSA:3.90.105.10 30 165 1.7E-67 T 14-10-2018 Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 Pfam PF00994 Probable molybdopterin binding domain 173 311 3.6E-15 T 14-10-2018 IPR001453 MoaB/Mog domain Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 SUPERFAMILY SSF53218 169 313 1.27E-26 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 SMART SM00852 171 312 1.6E-20 T 14-10-2018 IPR001453 MoaB/Mog domain Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 Gene3D G3DSA:2.40.340.10 333 407 2.5E-10 T 14-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 Gene3D G3DSA:2.170.190.11 52 132 1.7E-67 T 14-10-2018 Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 Gene3D G3DSA:3.40.980.10 166 311 1.7E-67 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 Gene3D G3DSA:3.40.190.10 481 494 2.9E-8 T 14-10-2018 Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 Pfam PF03453 MoeA N-terminal region (domain I and II) 10 158 4.2E-28 T 14-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 Pfam PF03454 MoeA C-terminal region (domain IV) 337 404 2.5E-7 T 14-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0827 6b4fa9c5dae9c00c5f50c13db883116f 635 SUPERFAMILY SSF53850 487 632 2.76E-10 T 14-10-2018 Amico_1157 1132486a252735a20161a215ca8fe3af 468 Hamap MF_00423 L-seryl-tRNA(Sec) selenium transferase [selA]. 1 464 188.586 T 14-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 Amico_1157 1132486a252735a20161a215ca8fe3af 468 Gene3D G3DSA:3.40.640.10 95 357 2.9E-160 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1157 1132486a252735a20161a215ca8fe3af 468 TIGRFAM TIGR00474 selA: L-seryl-tRNA(Sec) selenium transferase 9 458 1.0E-172 T 14-10-2018 IPR004534 L-seryl-tRNA(Sec) selenium transferase GO:0001514|GO:0004125|GO:0005737 KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 Amico_1157 1132486a252735a20161a215ca8fe3af 468 Pfam PF12390 Selenocysteine synthase N terminal 10 48 5.0E-5 T 14-10-2018 IPR025862 L-seryl-tRNA selenium transferase N-terminal domain KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 Amico_1157 1132486a252735a20161a215ca8fe3af 468 Pfam PF03841 L-seryl-tRNA selenium transferase 83 446 1.4E-144 T 14-10-2018 IPR018319 L-seryl-tRNA selenium transferase-like KEGG: 00450+2.9.1.1|KEGG: 00970+2.9.1.1 Amico_1157 1132486a252735a20161a215ca8fe3af 468 Gene3D G3DSA:3.90.1150.110 12 450 2.9E-160 T 14-10-2018 Amico_1157 1132486a252735a20161a215ca8fe3af 468 SUPERFAMILY SSF53383 77 457 1.79E-45 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0782 9296df6bb671a6ef2cc4da5d2f807bca 298 SUPERFAMILY SSF55315 49 122 4.12E-14 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like Amico_0782 9296df6bb671a6ef2cc4da5d2f807bca 298 TIGRFAM TIGR00186 rRNA_methyl_3: RNA methyltransferase, TrmH family, group 3 51 291 1.5E-61 T 14-10-2018 IPR004441 RNA methyltransferase TrmH family GO:0006396|GO:0008173 Reactome: R-HSA-6793080 Amico_0782 9296df6bb671a6ef2cc4da5d2f807bca 298 Gene3D G3DSA:3.30.1330.30 42 119 6.8E-13 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like Amico_0782 9296df6bb671a6ef2cc4da5d2f807bca 298 Pfam PF00588 SpoU rRNA Methylase family 145 284 3.0E-33 T 14-10-2018 IPR001537 tRNA/rRNA methyltransferase, SpoU type GO:0003723|GO:0006396|GO:0008173 Amico_0782 9296df6bb671a6ef2cc4da5d2f807bca 298 SMART SM00967 52 128 3.7E-13 T 14-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 Amico_0782 9296df6bb671a6ef2cc4da5d2f807bca 298 Pfam PF08032 RNA 2'-O ribose methyltransferase substrate binding 52 126 1.3E-12 T 14-10-2018 IPR013123 RNA 2-O ribose methyltransferase, substrate binding GO:0008168 Reactome: R-HSA-6793080 Amico_0782 9296df6bb671a6ef2cc4da5d2f807bca 298 SUPERFAMILY SSF75217 117 291 2.88E-41 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases Amico_0782 9296df6bb671a6ef2cc4da5d2f807bca 298 Gene3D G3DSA:3.40.1280.10 120 291 1.2E-48 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 SUPERFAMILY SSF82714 690 775 3.14E-11 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 Gene3D G3DSA:3.30.2090.10 177 267 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 Gene3D G3DSA:3.30.70.1440 643 835 0.0 T 14-10-2018 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 Gene3D G3DSA:1.20.1640.10 499 992 0.0 T 14-10-2018 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 Gene3D G3DSA:3.30.70.1430 553 642 0.0 T 14-10-2018 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 SUPERFAMILY SSF82693 136 322 1.99E-16 T 14-10-2018 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 SUPERFAMILY SSF82693 551 640 7.32E-12 T 14-10-2018 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 SUPERFAMILY SSF82866 774 1000 4.97E-50 T 14-10-2018 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 Pfam PF00873 AcrB/AcrD/AcrF family 5 995 5.6E-269 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 SUPERFAMILY SSF82714 181 265 9.81E-17 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 SUPERFAMILY SSF82693 40 134 4.45E-25 T 14-10-2018 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 PRINTS PR00702 Acriflavin resistance protein family signature 436 459 3.4E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 PRINTS PR00702 Acriflavin resistance protein family signature 461 484 3.4E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 PRINTS PR00702 Acriflavin resistance protein family signature 328 351 3.4E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 PRINTS PR00702 Acriflavin resistance protein family signature 538 555 3.4E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 PRINTS PR00702 Acriflavin resistance protein family signature 604 618 3.4E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 3.4E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 PRINTS PR00702 Acriflavin resistance protein family signature 355 376 3.4E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 3.4E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 PRINTS PR00702 Acriflavin resistance protein family signature 383 407 3.4E-52 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 Gene3D G3DSA:1.20.1640.10 10 498 0.0 T 14-10-2018 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 Gene3D G3DSA:3.30.70.1320 134 324 0.0 T 14-10-2018 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 Gene3D G3DSA:3.30.2090.10 689 777 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 Gene3D G3DSA:3.30.70.1430 40 785 0.0 T 14-10-2018 Amico_1219 3f3bf2a0165c40d53b4fdf7f2dc60a4d 1031 SUPERFAMILY SSF82866 295 488 4.45E-41 T 14-10-2018 Amico_1540 d5c89f7567649ce6f560d74244a82daf 347 Gene3D G3DSA:3.40.190.170 26 335 2.6E-86 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1540 d5c89f7567649ce6f560d74244a82daf 347 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 44 284 4.5E-57 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_1540 d5c89f7567649ce6f560d74244a82daf 347 PIRSF PIRSF006470 1 336 1.9E-66 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_1540 d5c89f7567649ce6f560d74244a82daf 347 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 41 312 3.9E-72 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_0988 3dab70a44d1ba1ffb12f31630dbbf7b1 312 Pfam PF01992 ATP synthase (C/AC39) subunit 4 304 1.9E-29 T 14-10-2018 IPR002843 ATPase, V0 complex, c/d subunit Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0988 3dab70a44d1ba1ffb12f31630dbbf7b1 312 Gene3D G3DSA:1.20.1690.10 53 159 1.0E-29 T 14-10-2018 IPR035067 V-type ATPase subunit c Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0988 3dab70a44d1ba1ffb12f31630dbbf7b1 312 SUPERFAMILY SSF103486 3 308 3.27E-20 T 14-10-2018 IPR036079 V-type ATP synthase subunit C-like Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0988 3dab70a44d1ba1ffb12f31630dbbf7b1 312 Gene3D G3DSA:1.10.132.50 4 301 1.0E-29 T 14-10-2018 Amico_0988 3dab70a44d1ba1ffb12f31630dbbf7b1 312 Gene3D G3DSA:1.20.1690.10 170 268 1.0E-29 T 14-10-2018 IPR035067 V-type ATPase subunit c Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Pfam PF05000 RNA polymerase Rpb1, domain 4 849 899 9.6E-11 T 14-10-2018 IPR007083 RNA polymerase Rpb1, domain 4 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Pfam PF04997 RNA polymerase Rpb1, domain 1 4 132 2.8E-28 T 14-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Gene3D G3DSA:1.10.132.30 800 934 1.3E-48 T 14-10-2018 IPR038120 RNA polymerase Rpb1, funnel domain superfamily KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 SMART SM00663 400 679 1.1E-175 T 14-10-2018 IPR006592 RNA polymerase, N-terminal GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Pfam PF00623 RNA polymerase Rpb1, domain 2 509 650 4.0E-37 T 14-10-2018 IPR000722 RNA polymerase, alpha subunit GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 SUPERFAMILY SSF64484 5 1260 0.0 T 14-10-2018 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 SUPERFAMILY SSF64484 1497 1638 7.63E-22 T 14-10-2018 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Gene3D G3DSA:1.10.150.390 1591 1650 2.0E-25 T 14-10-2018 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Gene3D G3DSA:1.10.274.100 725 799 1.1E-16 T 14-10-2018 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Gene3D G3DSA:1.10.274.100 655 724 1.0E-21 T 14-10-2018 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Gene3D G3DSA:1.10.40.90 539 581 2.2E-22 T 14-10-2018 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Gene3D G3DSA:2.40.50.100 1108 1174 1.1E-50 T 14-10-2018 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Hamap MF_01322 DNA-directed RNA polymerase subunit beta' [rpoC]. 1 1652 17.205 T 14-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Pfam PF04998 RNA polymerase Rpb1, domain 5 910 1219 8.4E-59 T 14-10-2018 IPR007081 RNA polymerase Rpb1, domain 5 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Pfam PF04997 RNA polymerase Rpb1, domain 1 369 507 2.6E-46 T 14-10-2018 IPR007080 RNA polymerase Rpb1, domain 1 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Pfam PF04983 RNA polymerase Rpb1, domain 3 654 801 1.1E-23 T 14-10-2018 IPR007066 RNA polymerase Rpb1, domain 3 GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 Gene3D G3DSA:1.10.1790.20 1092 1262 1.1E-50 T 14-10-2018 Amico_0620 7aacc90db0e062c1e051f785952325ba 1675 TIGRFAM TIGR02386 rpoC_TIGR: DNA-directed RNA polymerase, beta' subunit 311 1269 0.0 T 14-10-2018 IPR012754 DNA-directed RNA polymerase, subunit beta-prime GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6 Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 SMART SM00382 121 282 2.3E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 Pfam PF06689 ClpX C4-type zinc finger 16 52 2.5E-19 T 14-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 Pfam PF07724 AAA domain (Cdc48 subfamily) 121 318 9.7E-46 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 Gene3D G3DSA:3.40.50.300 66 323 1.1E-105 T 14-10-2018 Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 325 400 6.6E-12 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 SMART SM00994 15 54 4.3E-22 T 14-10-2018 IPR010603 Zinc finger, ClpX C4-type GO:0008270|GO:0046983 Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 Hamap MF_00175 ATP-dependent Clp protease ATP-binding subunit ClpX [clpX]. 8 424 51.349 T 14-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 Gene3D G3DSA:3.30.50.30 5 55 3.6E-21 T 14-10-2018 IPR038366 Zinc finger, ClpX C4-type superfamily Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 SUPERFAMILY SSF57716 16 51 9.27E-11 T 14-10-2018 Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 TIGRFAM TIGR00382 clpX: ATP-dependent Clp protease, ATP-binding subunit ClpX 12 419 4.9E-195 T 14-10-2018 IPR004487 Clp protease, ATP-binding subunit ClpX GO:0005524|GO:0006457|GO:0051082 Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 Gene3D G3DSA:1.10.8.60 324 429 1.3E-35 T 14-10-2018 Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 SUPERFAMILY SSF52540 72 414 2.65E-73 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0897 28de6287aa3e5f4ac137c11717704bf0 429 SMART SM01086 325 420 1.5E-24 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Amico_1585 09f86faf95538563fc230d5f44f4c4b7 418 Pfam PF00364 Biotin-requiring enzyme 5 76 7.5E-16 T 14-10-2018 IPR000089 Biotin/lipoyl attachment Amico_1585 09f86faf95538563fc230d5f44f4c4b7 418 SUPERFAMILY SSF51230 2 86 9.42E-23 T 14-10-2018 IPR011053 Single hybrid motif Amico_1585 09f86faf95538563fc230d5f44f4c4b7 418 SUPERFAMILY SSF47005 94 138 2.35E-12 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Amico_1585 09f86faf95538563fc230d5f44f4c4b7 418 Gene3D G3DSA:3.30.559.10 181 415 7.8E-89 T 14-10-2018 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily Reactome: R-HSA-389661 Amico_1585 09f86faf95538563fc230d5f44f4c4b7 418 Pfam PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) 191 417 4.8E-81 T 14-10-2018 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain GO:0016746 Reactome: R-HSA-389661 Amico_1585 09f86faf95538563fc230d5f44f4c4b7 418 Gene3D G3DSA:2.40.50.100 2 94 3.8E-25 T 14-10-2018 Amico_1585 09f86faf95538563fc230d5f44f4c4b7 418 SUPERFAMILY SSF52777 188 418 4.31E-81 T 14-10-2018 Amico_1585 09f86faf95538563fc230d5f44f4c4b7 418 Pfam PF02817 e3 binding domain 146 177 5.9E-9 T 14-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 Amico_1585 09f86faf95538563fc230d5f44f4c4b7 418 Pfam PF02817 e3 binding domain 99 133 1.4E-14 T 14-10-2018 IPR004167 Peripheral subunit-binding domain GO:0016746 Reactome: R-HSA-389661 Amico_1585 09f86faf95538563fc230d5f44f4c4b7 418 Gene3D G3DSA:4.10.320.10 139 180 5.7E-9 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Amico_1585 09f86faf95538563fc230d5f44f4c4b7 418 SUPERFAMILY SSF47005 143 182 7.32E-6 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Amico_1585 09f86faf95538563fc230d5f44f4c4b7 418 Gene3D G3DSA:4.10.320.10 95 138 6.0E-17 T 14-10-2018 IPR036625 E3-binding domain superfamily GO:0016746 Reactome: R-HSA-389661 Amico_0978 c3549031729b4ec4465c2aac804072ca 469 Gene3D G3DSA:3.40.50.620 1 327 8.7E-126 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0978 c3549031729b4ec4465c2aac804072ca 469 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 1 469 27.259 T 14-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Amico_0978 c3549031729b4ec4465c2aac804072ca 469 SUPERFAMILY SSF48163 312 469 6.02E-19 T 14-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Amico_0978 c3549031729b4ec4465c2aac804072ca 469 SUPERFAMILY SSF52374 2 307 5.63E-105 T 14-10-2018 Amico_0978 c3549031729b4ec4465c2aac804072ca 469 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 2 317 1.2E-93 T 14-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Amico_0978 c3549031729b4ec4465c2aac804072ca 469 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 2 467 1.2E-134 T 14-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Amico_0978 c3549031729b4ec4465c2aac804072ca 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 207 215 1.8E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Amico_0978 c3549031729b4ec4465c2aac804072ca 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 191 201 1.8E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Amico_0978 c3549031729b4ec4465c2aac804072ca 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 5 17 1.8E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Amico_0978 c3549031729b4ec4465c2aac804072ca 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 34 47 1.8E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Amico_0978 c3549031729b4ec4465c2aac804072ca 469 PRINTS PR00987 Glutamyl-tRNA synthetase signature 19 30 1.8E-26 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Amico_0978 c3549031729b4ec4465c2aac804072ca 469 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 8 19 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0978 c3549031729b4ec4465c2aac804072ca 469 Gene3D G3DSA:1.10.10.350 378 469 5.6E-16 T 14-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Amico_0887 85d7f892cb6ad5bd9ae9668773fa7420 314 Gene3D G3DSA:3.40.50.300 39 246 1.3E-86 T 14-10-2018 Amico_0887 85d7f892cb6ad5bd9ae9668773fa7420 314 TIGRFAM TIGR00750 lao: LAO/AO transport system ATPase 11 306 9.0E-108 T 14-10-2018 IPR005129 SIMIBI class G3E GTPase, ArgK/MeaB GO:0003924|GO:0005525 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Amico_0887 85d7f892cb6ad5bd9ae9668773fa7420 314 Pfam PF03308 ArgK protein 16 277 2.4E-97 T 14-10-2018 Amico_0887 85d7f892cb6ad5bd9ae9668773fa7420 314 SMART SM00382 43 212 6.8E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0887 85d7f892cb6ad5bd9ae9668773fa7420 314 SUPERFAMILY SSF52540 5 275 1.21E-74 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1914 a6e758e432879e953acd7b75a84f6a9f 332 SUPERFAMILY SSF64182 6 292 1.35E-14 T 14-10-2018 IPR038763 DHH phosphoesterase superfamily Amico_0758 81d747349d488717ca0abfeedb606183 242 Pfam PF02565 Recombination protein O C terminal 89 210 2.8E-10 T 14-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Amico_0758 81d747349d488717ca0abfeedb606183 242 Hamap MF_00201 DNA repair protein RecO [recO]. 7 241 13.971 T 14-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Amico_0758 81d747349d488717ca0abfeedb606183 242 Gene3D G3DSA:3.30.60.100 152 189 2.6E-5 T 14-10-2018 Amico_0758 81d747349d488717ca0abfeedb606183 242 Gene3D G3DSA:1.20.1440.120 107 235 2.6E-5 T 14-10-2018 Amico_0758 81d747349d488717ca0abfeedb606183 242 Pfam PF11967 Recombination protein O N terminal 9 74 5.0E-6 T 14-10-2018 IPR022572 DNA replication/recombination mediator RecO, N-terminal Amico_0758 81d747349d488717ca0abfeedb606183 242 TIGRFAM TIGR00613 reco: DNA repair protein RecO 10 209 2.4E-16 T 14-10-2018 IPR003717 Recombination protein O, RecO GO:0006281|GO:0006310 Amico_0758 81d747349d488717ca0abfeedb606183 242 SUPERFAMILY SSF50249 8 80 8.91E-5 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0758 81d747349d488717ca0abfeedb606183 242 SUPERFAMILY SSF57863 87 206 6.28E-15 T 14-10-2018 IPR037278 ARFGAP/RecO-like zinc finger Amico_0204 224737825d075b0df13389249fb2f7b4 315 Pfam PF00696 Amino acid kinase family 3 294 6.9E-27 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Amico_0204 224737825d075b0df13389249fb2f7b4 315 PRINTS PR01469 Bacterial carbamate kinase signature 182 200 9.2E-65 T 14-10-2018 Amico_0204 224737825d075b0df13389249fb2f7b4 315 PRINTS PR01469 Bacterial carbamate kinase signature 44 63 9.2E-65 T 14-10-2018 Amico_0204 224737825d075b0df13389249fb2f7b4 315 PRINTS PR01469 Bacterial carbamate kinase signature 110 129 9.2E-65 T 14-10-2018 Amico_0204 224737825d075b0df13389249fb2f7b4 315 PRINTS PR01469 Bacterial carbamate kinase signature 213 228 9.2E-65 T 14-10-2018 Amico_0204 224737825d075b0df13389249fb2f7b4 315 PRINTS PR01469 Bacterial carbamate kinase signature 268 283 9.2E-65 T 14-10-2018 Amico_0204 224737825d075b0df13389249fb2f7b4 315 PRINTS PR01469 Bacterial carbamate kinase signature 159 178 9.2E-65 T 14-10-2018 Amico_0204 224737825d075b0df13389249fb2f7b4 315 PRINTS PR01469 Bacterial carbamate kinase signature 75 93 9.2E-65 T 14-10-2018 Amico_0204 224737825d075b0df13389249fb2f7b4 315 SUPERFAMILY SSF53633 2 311 9.03E-81 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Amico_0204 224737825d075b0df13389249fb2f7b4 315 PIRSF PIRSF000723 1 313 1.3E-135 T 14-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 Amico_0204 224737825d075b0df13389249fb2f7b4 315 TIGRFAM TIGR00746 arcC: carbamate kinase 3 311 4.1E-129 T 14-10-2018 IPR003964 Carbamate kinase GO:0006525|GO:0008804 KEGG: 00220+2.7.2.2|KEGG: 00230+2.7.2.2|KEGG: 00910+2.7.2.2 Amico_0204 224737825d075b0df13389249fb2f7b4 315 Gene3D G3DSA:3.40.1160.10 1 313 7.5E-128 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Amico_0284 4eaa7eabf5841d41a190d745ccdf6cf2 179 Gene3D G3DSA:3.40.109.10 2 178 3.4E-51 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Amico_0284 4eaa7eabf5841d41a190d745ccdf6cf2 179 Pfam PF00881 Nitroreductase family 7 65 3.3E-17 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Amico_0284 4eaa7eabf5841d41a190d745ccdf6cf2 179 Pfam PF00881 Nitroreductase family 71 157 3.7E-12 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Amico_0284 4eaa7eabf5841d41a190d745ccdf6cf2 179 SUPERFAMILY SSF55469 2 178 1.57E-49 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Amico_1590 8466617da5e29cc5224c4e2318e2d230 323 Pfam PF02780 Transketolase, C-terminal domain 193 315 6.9E-41 T 14-10-2018 IPR033248 Transketolase, C-terminal domain Amico_1590 8466617da5e29cc5224c4e2318e2d230 323 Pfam PF02779 Transketolase, pyrimidine binding domain 4 178 9.6E-48 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Amico_1590 8466617da5e29cc5224c4e2318e2d230 323 SMART SM00861 4 179 1.0E-56 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Amico_1590 8466617da5e29cc5224c4e2318e2d230 323 Gene3D G3DSA:3.40.50.920 194 323 3.9E-46 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1590 8466617da5e29cc5224c4e2318e2d230 323 SUPERFAMILY SSF52518 1 203 1.23E-67 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1590 8466617da5e29cc5224c4e2318e2d230 323 SUPERFAMILY SSF52922 188 323 4.06E-41 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1590 8466617da5e29cc5224c4e2318e2d230 323 Gene3D G3DSA:3.40.50.970 1 193 1.2E-83 T 14-10-2018 Amico_0030 ef6de1a18e6ec5f5da03f9259c30fdef 144 Gene3D G3DSA:2.40.33.20 2 144 5.0E-16 T 14-10-2018 Amico_0030 ef6de1a18e6ec5f5da03f9259c30fdef 144 SUPERFAMILY SSF50800 2 141 7.85E-20 T 14-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Amico_1034 6879cdaec40e9101ace04832c2baa5a3 158 SUPERFAMILY SSF48013 9 139 4.71E-33 T 14-10-2018 IPR035926 NusB-like superfamily Amico_1034 6879cdaec40e9101ace04832c2baa5a3 158 Gene3D G3DSA:1.10.940.10 7 146 4.3E-40 T 14-10-2018 IPR035926 NusB-like superfamily Amico_1034 6879cdaec40e9101ace04832c2baa5a3 158 Hamap MF_00073 Transcription antitermination protein NusB [nusB]. 8 140 21.685 T 14-10-2018 IPR011605 NusB antitermination factor GO:0006353 Amico_1034 6879cdaec40e9101ace04832c2baa5a3 158 Pfam PF01029 NusB family 12 137 1.4E-33 T 14-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Amico_1034 6879cdaec40e9101ace04832c2baa5a3 158 TIGRFAM TIGR01951 nusB: transcription antitermination factor NusB 9 138 4.3E-37 T 14-10-2018 IPR011605 NusB antitermination factor GO:0006353 Amico_0612 ce05dd73b02dd91d6ab239062d7d1ed7 1139 SMART SM00968 501 617 3.1E-11 T 14-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 Amico_0612 ce05dd73b02dd91d6ab239062d7d1ed7 1139 Gene3D G3DSA:1.20.1060.20 482 657 1.1E-33 T 14-10-2018 Amico_0612 ce05dd73b02dd91d6ab239062d7d1ed7 1139 Pfam PF06470 SMC proteins Flexible Hinge Domain 507 616 1.4E-15 T 14-10-2018 IPR010935 SMCs flexible hinge GO:0005515|GO:0005524|GO:0005694|GO:0051276 Amico_0612 ce05dd73b02dd91d6ab239062d7d1ed7 1139 Gene3D G3DSA:3.40.50.300 1 242 1.0E-41 T 14-10-2018 Amico_0612 ce05dd73b02dd91d6ab239062d7d1ed7 1139 Gene3D G3DSA:3.30.70.1620 561 645 1.1E-33 T 14-10-2018 Amico_0612 ce05dd73b02dd91d6ab239062d7d1ed7 1139 SUPERFAMILY SSF52540 758 1134 2.18E-29 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0612 ce05dd73b02dd91d6ab239062d7d1ed7 1139 SUPERFAMILY SSF75553 468 664 2.35E-32 T 14-10-2018 IPR036277 SMCs flexible hinge superfamily GO:0005515|GO:0005524|GO:0005694|GO:0051276 Amico_0612 ce05dd73b02dd91d6ab239062d7d1ed7 1139 Pfam PF02463 RecF/RecN/SMC N terminal domain 2 1127 1.6E-48 T 14-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Amico_0612 ce05dd73b02dd91d6ab239062d7d1ed7 1139 TIGRFAM TIGR02168 SMC_prok_B: chromosome segregation protein SMC 2 1134 3.0E-186 T 14-10-2018 IPR011890 Structural maintenance of chromosomes protein, prokaryotic GO:0007062|GO:0030261 Amico_0612 ce05dd73b02dd91d6ab239062d7d1ed7 1139 PIRSF PIRSF005719 1 1139 4.5E-173 T 14-10-2018 IPR024704 Structural maintenance of chromosomes protein Amico_0612 ce05dd73b02dd91d6ab239062d7d1ed7 1139 Gene3D G3DSA:3.40.50.300 987 1139 4.7E-40 T 14-10-2018 Amico_0612 ce05dd73b02dd91d6ab239062d7d1ed7 1139 SUPERFAMILY SSF52540 2 1127 1.25E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1019 f6aac344e200a9c046e4460addb80a83 72 SUPERFAMILY SSF54862 5 69 1.04E-16 T 14-10-2018 Amico_1019 f6aac344e200a9c046e4460addb80a83 72 Pfam PF12838 4Fe-4S dicluster domain 13 62 8.6E-11 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_1019 f6aac344e200a9c046e4460addb80a83 72 Gene3D G3DSA:3.30.70.20 6 72 5.6E-14 T 14-10-2018 Amico_1019 f6aac344e200a9c046e4460addb80a83 72 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 49 60 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1429 8ed4978fedfd621af5fc9a3d9ef737de 239 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1429 8ed4978fedfd621af5fc9a3d9ef737de 239 Gene3D G3DSA:3.40.50.300 1 239 1.1E-59 T 14-10-2018 Amico_1429 8ed4978fedfd621af5fc9a3d9ef737de 239 Pfam PF00005 ABC transporter 18 167 5.7E-26 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1429 8ed4978fedfd621af5fc9a3d9ef737de 239 PIRSF PIRSF039137 1 239 2.7E-110 T 14-10-2018 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein GO:0015658|GO:0015803 Amico_1429 8ed4978fedfd621af5fc9a3d9ef737de 239 SUPERFAMILY SSF52540 2 237 8.88E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1429 8ed4978fedfd621af5fc9a3d9ef737de 239 SMART SM00382 26 215 8.6E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0690 c2cbc4e3d7d66fb296a93ac489cc5f18 96 Hamap MF_00500 30S ribosomal protein S20 [rpsT]. 1 85 15.529 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0690 c2cbc4e3d7d66fb296a93ac489cc5f18 96 Gene3D G3DSA:1.20.58.110 1 87 1.5E-27 T 14-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0690 c2cbc4e3d7d66fb296a93ac489cc5f18 96 SUPERFAMILY SSF46992 3 86 1.57E-26 T 14-10-2018 IPR036510 Ribosomal protein S20 superfamily GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0690 c2cbc4e3d7d66fb296a93ac489cc5f18 96 Pfam PF01649 Ribosomal protein S20 2 84 3.8E-26 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0690 c2cbc4e3d7d66fb296a93ac489cc5f18 96 ProDom PD004231 RIBOSOMAL S20 30S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN S20P SUBUNIT CHLOROPLAST DIRECT 12 83 2.0E-8 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0690 c2cbc4e3d7d66fb296a93ac489cc5f18 96 TIGRFAM TIGR00029 S20: ribosomal protein bS20 1 86 8.8E-21 T 14-10-2018 IPR002583 Ribosomal protein S20 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0394 903943ccc362388eb7142c82dbac114c 370 Gene3D G3DSA:3.30.250.10 276 334 6.8E-20 T 14-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal Amico_0394 903943ccc362388eb7142c82dbac114c 370 Gene3D G3DSA:3.40.50.300 31 274 4.6E-76 T 14-10-2018 Amico_0394 903943ccc362388eb7142c82dbac114c 370 PRINTS PR00142 RecA protein signature 250 279 1.2E-78 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Amico_0394 903943ccc362388eb7142c82dbac114c 370 PRINTS PR00142 RecA protein signature 304 321 1.2E-78 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Amico_0394 903943ccc362388eb7142c82dbac114c 370 PRINTS PR00142 RecA protein signature 98 127 1.2E-78 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Amico_0394 903943ccc362388eb7142c82dbac114c 370 PRINTS PR00142 RecA protein signature 170 199 1.2E-78 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Amico_0394 903943ccc362388eb7142c82dbac114c 370 PRINTS PR00142 RecA protein signature 132 161 1.2E-78 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Amico_0394 903943ccc362388eb7142c82dbac114c 370 PRINTS PR00142 RecA protein signature 217 245 1.2E-78 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Amico_0394 903943ccc362388eb7142c82dbac114c 370 ProSitePatterns PS00321 recA signature. 220 228 - T 14-10-2018 IPR020584 DNA recombination/repair protein RecA, conserved site GO:0003677|GO:0005524|GO:0006259|GO:0008094 Amico_0394 903943ccc362388eb7142c82dbac114c 370 Pfam PF00154 recA bacterial DNA recombination protein 13 274 1.3E-118 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Amico_0394 903943ccc362388eb7142c82dbac114c 370 Hamap MF_00268 Protein RecA [recA]. 10 336 45.426 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Amico_0394 903943ccc362388eb7142c82dbac114c 370 SUPERFAMILY SSF54752 279 331 1.12E-15 T 14-10-2018 IPR023400 DNA recombination and repair protein RecA, C-terminal Amico_0394 903943ccc362388eb7142c82dbac114c 370 SMART SM00382 62 235 5.7E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0394 903943ccc362388eb7142c82dbac114c 370 TIGRFAM TIGR02012 tigrfam_recA: protein RecA 10 330 4.5E-141 T 14-10-2018 IPR013765 DNA recombination and repair protein RecA GO:0003697|GO:0005524|GO:0006281 Amico_0394 903943ccc362388eb7142c82dbac114c 370 SUPERFAMILY SSF52540 10 274 3.01E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0865 404c2751933fc2cde61ae23dd17ed5c2 201 Gene3D G3DSA:2.40.50.140 1 64 1.9E-15 T 14-10-2018 Amico_0865 404c2751933fc2cde61ae23dd17ed5c2 201 SUPERFAMILY SSF50249 1 62 2.74E-10 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0865 404c2751933fc2cde61ae23dd17ed5c2 201 Hamap MF_00031 Holliday junction ATP-dependent DNA helicase RuvA [ruvA]. 1 199 25.153 T 14-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Amico_0865 404c2751933fc2cde61ae23dd17ed5c2 201 TIGRFAM TIGR00084 ruvA: Holliday junction DNA helicase RuvA 1 187 5.2E-39 T 14-10-2018 IPR000085 Bacterial DNA recombination protein RuvA GO:0003678|GO:0006281|GO:0006310 Amico_0865 404c2751933fc2cde61ae23dd17ed5c2 201 Gene3D G3DSA:1.10.150.20 66 138 1.0E-19 T 14-10-2018 Amico_0865 404c2751933fc2cde61ae23dd17ed5c2 201 Pfam PF01330 RuvA N terminal domain 1 61 3.2E-14 T 14-10-2018 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial GO:0005524|GO:0006281|GO:0006310|GO:0009378 Amico_0865 404c2751933fc2cde61ae23dd17ed5c2 201 Pfam PF14520 Helix-hairpin-helix domain 71 128 5.9E-13 T 14-10-2018 Amico_0865 404c2751933fc2cde61ae23dd17ed5c2 201 SUPERFAMILY SSF47781 65 134 2.95E-17 T 14-10-2018 IPR010994 RuvA domain 2-like Amico_0844 153e9731ceb982b3230fe57a0d1ab850 93 Hamap MF_00539 50S ribosomal protein L27 [rpmA]. 11 93 26.62 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0844 153e9731ceb982b3230fe57a0d1ab850 93 Gene3D G3DSA:2.40.50.100 30 93 4.3E-27 T 14-10-2018 Amico_0844 153e9731ceb982b3230fe57a0d1ab850 93 SUPERFAMILY SSF110324 12 89 2.02E-31 T 14-10-2018 Amico_0844 153e9731ceb982b3230fe57a0d1ab850 93 TIGRFAM TIGR00062 L27: ribosomal protein bL27 11 90 2.6E-37 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0844 153e9731ceb982b3230fe57a0d1ab850 93 ProSitePatterns PS00831 Ribosomal protein L27 signature. 44 58 - T 14-10-2018 IPR018261 Ribosomal protein L27, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0844 153e9731ceb982b3230fe57a0d1ab850 93 PRINTS PR00063 Ribosomal protein L27 signature 39 63 5.7E-38 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0844 153e9731ceb982b3230fe57a0d1ab850 93 PRINTS PR00063 Ribosomal protein L27 signature 64 88 5.7E-38 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0844 153e9731ceb982b3230fe57a0d1ab850 93 PRINTS PR00063 Ribosomal protein L27 signature 14 38 5.7E-38 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0844 153e9731ceb982b3230fe57a0d1ab850 93 ProDom PD003114 RIBOSOMAL L27 50S RIBONUCLEOPROTEIN CHLOROPLAST MITOCHONDRIAL PEPTIDE 60S TRANSIT PRECURSOR 38 79 3.0E-12 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0844 153e9731ceb982b3230fe57a0d1ab850 93 Pfam PF01016 Ribosomal L27 protein 12 90 5.2E-37 T 14-10-2018 IPR001684 Ribosomal protein L27 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0376 43b72fc29c930f228bf4a332fe0a2617 493 ProSitePatterns PS00455 Putative AMP-binding domain signature. 152 163 - T 14-10-2018 IPR020845 AMP-binding, conserved site Amico_0376 43b72fc29c930f228bf4a332fe0a2617 493 Gene3D G3DSA:3.40.50.12780 1 394 5.1E-90 T 14-10-2018 Amico_0376 43b72fc29c930f228bf4a332fe0a2617 493 Pfam PF00501 AMP-binding enzyme 13 401 3.7E-86 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Amico_0376 43b72fc29c930f228bf4a332fe0a2617 493 Gene3D G3DSA:3.30.300.310 397 493 5.3E-30 T 14-10-2018 Amico_0376 43b72fc29c930f228bf4a332fe0a2617 493 SUPERFAMILY SSF56801 4 492 6.93E-128 T 14-10-2018 Amico_0376 43b72fc29c930f228bf4a332fe0a2617 493 Pfam PF13193 AMP-binding enzyme C-terminal domain 410 484 5.0E-18 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Amico_0289 ceda83dfc2c595819522f505fa85db4c 275 Gene3D G3DSA:1.10.150.650 96 167 5.2E-86 T 14-10-2018 Amico_0289 ceda83dfc2c595819522f505fa85db4c 275 SUPERFAMILY SSF89550 1 256 1.59E-41 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Amico_0289 ceda83dfc2c595819522f505fa85db4c 275 Pfam PF02811 PHP domain 5 166 3.8E-7 T 14-10-2018 IPR004013 PHP domain GO:0003824 Amico_0289 ceda83dfc2c595819522f505fa85db4c 275 SMART SM00481 4 69 3.0E-10 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Amico_0289 ceda83dfc2c595819522f505fa85db4c 275 Gene3D G3DSA:3.20.20.140 4 248 5.2E-86 T 14-10-2018 Amico_0813 f8ff80991c6367fa62f149f8bacafa23 552 Pfam PF03717 Penicillin-binding Protein dimerisation domain 51 153 1.9E-6 T 14-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Amico_0813 f8ff80991c6367fa62f149f8bacafa23 552 Gene3D G3DSA:3.40.710.10 273 467 7.8E-107 T 14-10-2018 Amico_0813 f8ff80991c6367fa62f149f8bacafa23 552 Gene3D G3DSA:3.30.450.330 213 547 7.8E-107 T 14-10-2018 Amico_0813 f8ff80991c6367fa62f149f8bacafa23 552 Gene3D G3DSA:3.90.1310.30 43 201 6.2E-26 T 14-10-2018 Amico_0813 f8ff80991c6367fa62f149f8bacafa23 552 Pfam PF00905 Penicillin binding protein transpeptidase domain 236 545 2.2E-69 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Amico_0813 f8ff80991c6367fa62f149f8bacafa23 552 SUPERFAMILY SSF56601 211 544 6.18E-89 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Amico_0813 f8ff80991c6367fa62f149f8bacafa23 552 SUPERFAMILY SSF56519 46 194 1.83E-28 T 14-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 SUPERFAMILY SSF48557 3 429 1.43E-128 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 TIGRFAM TIGR00928 purB: adenylosuccinate lyase 1 429 2.2E-163 T 14-10-2018 IPR004769 Adenylosuccinate lyase GO:0004018|GO:0009152 KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 SMART SM00998 349 430 1.2E-28 T 14-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 PRINTS PR00145 Argininosuccinate lyase family signature 128 148 1.5E-7 T 14-10-2018 Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 PRINTS PR00145 Argininosuccinate lyase family signature 216 240 1.5E-7 T 14-10-2018 Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 PRINTS PR00145 Argininosuccinate lyase family signature 87 109 1.5E-7 T 14-10-2018 Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 PRINTS PR00145 Argininosuccinate lyase family signature 261 277 1.5E-7 T 14-10-2018 Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 Gene3D G3DSA:1.20.200.10 93 347 1.8E-93 T 14-10-2018 Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 PRINTS PR00149 Fumarate lyase superfamily signature 88 106 6.9E-24 T 14-10-2018 IPR000362 Fumarate lyase family Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 PRINTS PR00149 Fumarate lyase superfamily signature 216 243 6.9E-24 T 14-10-2018 IPR000362 Fumarate lyase family Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 PRINTS PR00149 Fumarate lyase superfamily signature 261 277 6.9E-24 T 14-10-2018 IPR000362 Fumarate lyase family Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 PRINTS PR00149 Fumarate lyase superfamily signature 133 151 6.9E-24 T 14-10-2018 IPR000362 Fumarate lyase family Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 Pfam PF00206 Lyase 7 282 8.5E-52 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 Gene3D G3DSA:1.10.40.30 349 430 1.1E-27 T 14-10-2018 Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 Gene3D G3DSA:1.10.275.10 1 92 4.6E-36 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 Pfam PF10397 Adenylosuccinate lyase C-terminus 350 429 6.6E-24 T 14-10-2018 IPR019468 Adenylosuccinate lyase C-terminal KEGG: 00230+4.3.2.2|KEGG: 00250+4.3.2.2|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7219|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1048 77c6b7d94ae233886d10a1e801a9804e 437 ProSitePatterns PS00163 Fumarate lyases signature. 261 270 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Amico_0623 fbc27f6d746262ec0bf69379640dc325 156 SUPERFAMILY SSF47973 3 152 8.5E-56 T 14-10-2018 IPR036823 Ribosomal protein S7 domain superfamily Amico_0623 fbc27f6d746262ec0bf69379640dc325 156 PIRSF PIRSF002122 3 156 4.7E-56 T 14-10-2018 IPR000235 Ribosomal protein S5/S7 GO:0006412 Amico_0623 fbc27f6d746262ec0bf69379640dc325 156 Gene3D G3DSA:1.10.455.10 2 156 3.3E-58 T 14-10-2018 IPR036823 Ribosomal protein S7 domain superfamily Amico_0623 fbc27f6d746262ec0bf69379640dc325 156 Hamap MF_00480_B 30S ribosomal protein S7 [rpsG]. 1 156 33.07 T 14-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Amico_0623 fbc27f6d746262ec0bf69379640dc325 156 TIGRFAM TIGR01029 rpsG_bact: ribosomal protein uS7 3 156 8.4E-61 T 14-10-2018 IPR005717 Ribosomal protein S7, bacterial/organellar-type GO:0003735|GO:0006412|GO:0015935 Amico_0623 fbc27f6d746262ec0bf69379640dc325 156 Pfam PF00177 Ribosomal protein S7p/S5e 1 149 2.2E-60 T 14-10-2018 IPR023798 Ribosomal protein S7 domain Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 Gene3D G3DSA:2.60.40.10 3 129 5.4E-39 T 14-10-2018 IPR013783 Immunoglobulin-like fold Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 Gene3D G3DSA:3.20.20.80 130 528 1.6E-160 T 14-10-2018 Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 Pfam PF00128 Alpha amylase, catalytic domain 176 254 1.3E-10 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 SUPERFAMILY SSF51011 530 631 2.34E-31 T 14-10-2018 Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 Hamap MF_00685 1,4-alpha-glucan branching enzyme GlgB [glgB]. 6 632 42.069 T 14-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 SUPERFAMILY SSF81296 22 134 3.67E-26 T 14-10-2018 IPR014756 Immunoglobulin E-set Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 PIRSF PIRSF000463 1 633 1.8E-267 T 14-10-2018 IPR037439 1,4-alpha-glucan-branching enzyme GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900|Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 SUPERFAMILY SSF51445 139 527 8.84E-104 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 TIGRFAM TIGR01515 branching_enzym: 1,4-alpha-glucan branching enzyme 15 628 9.5E-261 T 14-10-2018 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB GO:0003844|GO:0005978 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 SMART SM00642 157 525 6.3E-7 T 14-10-2018 IPR006047 Glycosyl hydrolase, family 13, catalytic domain GO:0003824|GO:0005975 Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 Gene3D G3DSA:2.60.40.1180 529 633 5.7E-33 T 14-10-2018 IPR013780 Glycosyl hydrolase, all-beta Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 Pfam PF02806 Alpha amylase, C-terminal all-beta domain 534 631 2.4E-18 T 14-10-2018 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta GO:0003824|GO:0005975|GO:0043169 KEGG: 00500+2.4.1.18|MetaCyc: PWY-5067|MetaCyc: PWY-622|MetaCyc: PWY-7900 Amico_0235 41b59bb4a92478f06ffe27dbafe88777 633 Pfam PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 30 114 1.1E-18 T 14-10-2018 IPR004193 Glycoside hydrolase, family 13, N-terminal GO:0004553|GO:0005975 Reactome: R-HSA-3322077|Reactome: R-HSA-3878781 Amico_1302 171c9f3b2f7c742aef344066b0bc3309 222 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 34 48 5.4E-6 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1302 171c9f3b2f7c742aef344066b0bc3309 222 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 48 64 5.4E-6 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1302 171c9f3b2f7c742aef344066b0bc3309 222 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 74 5.3E-17 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1302 171c9f3b2f7c742aef344066b0bc3309 222 SMART SM00895 84 208 4.7E-10 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1302 171c9f3b2f7c742aef344066b0bc3309 222 Gene3D G3DSA:1.10.10.10 9 75 1.8E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1302 171c9f3b2f7c742aef344066b0bc3309 222 Gene3D G3DSA:1.20.120.530 79 221 5.8E-25 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1302 171c9f3b2f7c742aef344066b0bc3309 222 SMART SM00345 12 74 3.5E-14 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1302 171c9f3b2f7c742aef344066b0bc3309 222 Pfam PF07729 FCD domain 84 205 4.5E-22 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1302 171c9f3b2f7c742aef344066b0bc3309 222 SUPERFAMILY SSF48008 80 214 5.23E-26 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1302 171c9f3b2f7c742aef344066b0bc3309 222 SUPERFAMILY SSF46785 12 83 1.59E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1720 00f8f52d02e73c9a8517c5454cea549d 363 Gene3D G3DSA:3.40.50.2000 186 344 1.1E-108 T 14-10-2018 Amico_1720 00f8f52d02e73c9a8517c5454cea549d 363 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 5 358 2.6E-82 T 14-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 Amico_1720 00f8f52d02e73c9a8517c5454cea549d 363 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 24 357 1.4E-93 T 14-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Amico_1720 00f8f52d02e73c9a8517c5454cea549d 363 Gene3D G3DSA:3.40.50.2000 9 354 1.1E-108 T 14-10-2018 Amico_1720 00f8f52d02e73c9a8517c5454cea549d 363 SUPERFAMILY SSF53756 4 361 8.79E-99 T 14-10-2018 Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 SUPERFAMILY SSF82771 17 97 7.72E-21 T 14-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 SUPERFAMILY SSF46600 190 238 4.32E-11 T 14-10-2018 IPR036876 UVR domain superfamily Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 Gene3D G3DSA:3.40.1440.10 2 102 4.1E-32 T 14-10-2018 IPR035901 GIY-YIG endonuclease superfamily Reactome: R-HSA-5693568|Reactome: R-HSA-6783310 Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 Gene3D G3DSA:1.10.150.20 423 482 5.7E-16 T 14-10-2018 Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 Pfam PF08459 UvrC Helix-hairpin-helix N-terminal 266 414 1.0E-45 T 14-10-2018 IPR001162 UvrC family homology region Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 Pfam PF02151 UvrB/uvrC motif 205 236 3.2E-7 T 14-10-2018 IPR001943 UVR domain GO:0005515 Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 SMART SM00278 428 447 17.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 SMART SM00278 460 479 0.0025 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 SUPERFAMILY SSF47781 376 485 5.72E-20 T 14-10-2018 IPR010994 RuvA domain 2-like Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 Gene3D G3DSA:3.30.420.340 257 422 7.1E-51 T 14-10-2018 IPR038476 UvrC homology region 2 superfamily Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 Pfam PF12826 Helix-hairpin-helix motif 433 486 7.3E-12 T 14-10-2018 Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 SMART SM00465 16 98 4.7E-18 T 14-10-2018 IPR000305 GIY-YIG endonuclease Amico_1001 d9f519f34529d0e5daf693bc333d9a2f 491 Pfam PF01541 GIY-YIG catalytic domain 18 90 7.1E-11 T 14-10-2018 IPR000305 GIY-YIG endonuclease Amico_0396 a9892437775960747844d13b36875fa6 456 Pfam PF00860 Permease family 19 404 2.0E-78 T 14-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Amico_0396 a9892437775960747844d13b36875fa6 456 ProSitePatterns PS01116 Xanthine/uracil permeases family signature. 353 373 - T 14-10-2018 IPR006042 Xanthine/uracil permease GO:0005215|GO:0016020|GO:0055085 Reactome: R-HSA-196836 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 265 279 1.7E-27 T 14-10-2018 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 540 551 1.7E-27 T 14-10-2018 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 638 650 1.7E-27 T 14-10-2018 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 562 572 1.7E-27 T 14-10-2018 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 615 634 1.7E-27 T 14-10-2018 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 436 450 1.7E-27 T 14-10-2018 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 Pfam PF00702 haloacid dehalogenase-like hydrolase 434 629 1.1E-35 T 14-10-2018 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 Gene3D G3DSA:3.40.1110.10 447 547 1.9E-71 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 ProSitePatterns PS01047 Heavy-metal-associated domain. 15 44 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 Gene3D G3DSA:3.40.50.1000 417 667 1.9E-71 T 14-10-2018 IPR023214 HAD superfamily Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 Pfam PF00403 Heavy-metal-associated domain 13 72 1.0E-13 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 SUPERFAMILY SSF81665 168 693 4.05E-10 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 SUPERFAMILY SSF81653 225 315 3.4E-23 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 438 444 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 Gene3D G3DSA:3.30.70.100 8 82 7.8E-20 T 14-10-2018 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 587 603 1.8E-11 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 646 671 1.8E-11 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 PRINTS PR00120 H+-transporting ATPase (proton pump) signature 615 631 1.8E-11 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 SUPERFAMILY SSF56784 435 715 4.13E-56 T 14-10-2018 IPR036412 HAD-like superfamily Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 153 716 5.1E-167 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 Gene3D G3DSA:2.70.150.20 203 319 5.5E-37 T 14-10-2018 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 381 703 4.0E-64 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 186 360 1.9E-20 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 SUPERFAMILY SSF55008 4 79 1.19E-20 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Amico_1896 6dc3f2e56bc942c0daae779195fd795a 720 Pfam PF00122 E1-E2 ATPase 216 416 6.7E-49 T 14-10-2018 Amico_0217 ed40905f6e4d14ab9438119388c8cd6e 355 Gene3D G3DSA:3.40.190.170 35 335 1.2E-72 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_0217 ed40905f6e4d14ab9438119388c8cd6e 355 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 43 313 3.4E-53 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_0217 ed40905f6e4d14ab9438119388c8cd6e 355 SUPERFAMILY SSF53850 153 289 6.21E-6 T 14-10-2018 Amico_0735 f8450d65d72d8aac59f54a7b80b6ac55 280 ProSitePatterns PS00730 AP endonucleases family 2 signature 2. 173 180 - T 14-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 Amico_0735 f8450d65d72d8aac59f54a7b80b6ac55 280 ProSitePatterns PS00729 AP endonucleases family 2 signature 1. 67 75 - T 14-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 Amico_0735 f8450d65d72d8aac59f54a7b80b6ac55 280 Gene3D G3DSA:3.20.20.150 1 278 1.1E-90 T 14-10-2018 Amico_0735 f8450d65d72d8aac59f54a7b80b6ac55 280 SMART SM00518 3 278 1.5E-83 T 14-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 Amico_0735 f8450d65d72d8aac59f54a7b80b6ac55 280 ProSitePatterns PS00731 AP endonucleases family 2 signature 3. 213 229 - T 14-10-2018 IPR018246 AP endonuclease 2, zinc binding site GO:0008270 Amico_0735 f8450d65d72d8aac59f54a7b80b6ac55 280 TIGRFAM TIGR00587 nfo: apurinic endonuclease (APN1) 3 262 3.6E-83 T 14-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 Amico_0735 f8450d65d72d8aac59f54a7b80b6ac55 280 Hamap MF_00152 Probable endonuclease 4 [nfo]. 2 278 37.359 T 14-10-2018 IPR001719 AP endonuclease 2 GO:0003677|GO:0006281|GO:0008270 Amico_0735 f8450d65d72d8aac59f54a7b80b6ac55 280 Pfam PF01261 Xylose isomerase-like TIM barrel 28 237 2.3E-28 T 14-10-2018 IPR013022 Xylose isomerase-like, TIM barrel domain Amico_0735 f8450d65d72d8aac59f54a7b80b6ac55 280 SUPERFAMILY SSF51658 3 276 6.15E-77 T 14-10-2018 IPR036237 Xylose isomerase-like superfamily Amico_1397 3ae4b5cfecc6fb3b606495c839da817a 428 PIRSF PIRSF011588 1 428 2.9E-197 T 14-10-2018 IPR016585 Glycine/sarcosine/betaine reductase, component B, fused alpha/beta GO:0050485|GO:0055114 Amico_1397 3ae4b5cfecc6fb3b606495c839da817a 428 Pfam PF09338 Glycine/sarcosine/betaine reductase component B subunits 2 425 6.0E-206 T 14-10-2018 IPR015417 Glycine/sarcosine/betaine reductase complex, protein B, subunit alpha/ beta GO:0050485|GO:0055114 Amico_1400 914ccfbe45c5f7e4947b7605385233a2 445 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 31 45 - T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_1400 914ccfbe45c5f7e4947b7605385233a2 445 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 44 63 4.8E-14 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_1400 914ccfbe45c5f7e4947b7605385233a2 445 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 310 330 4.8E-14 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_1400 914ccfbe45c5f7e4947b7605385233a2 445 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 15 36 4.8E-14 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_1400 914ccfbe45c5f7e4947b7605385233a2 445 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 89 115 4.8E-14 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_1400 914ccfbe45c5f7e4947b7605385233a2 445 Pfam PF00209 Sodium:neurotransmitter symporter family 7 121 2.2E-23 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_1400 914ccfbe45c5f7e4947b7605385233a2 445 Pfam PF00209 Sodium:neurotransmitter symporter family 152 440 1.6E-34 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_1400 914ccfbe45c5f7e4947b7605385233a2 445 SUPERFAMILY SSF161070 7 443 9.81E-141 T 14-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 TIGRFAM TIGR01302 IMP_dehydrog: inosine-5'-monophosphate dehydrogenase 12 459 4.9E-189 T 14-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 SMART SM01240 11 477 0.0 T 14-10-2018 Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 Pfam PF00571 CBS domain 154 206 5.6E-8 T 14-10-2018 IPR000644 CBS domain Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 Pfam PF00571 CBS domain 100 144 8.8E-10 T 14-10-2018 IPR000644 CBS domain Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 SUPERFAMILY SSF51412 10 481 1.06E-118 T 14-10-2018 Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 Gene3D G3DSA:3.20.20.70 3 490 2.6E-210 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 PIRSF PIRSF000130 2 491 2.7E-204 T 14-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 ProSitePatterns PS00487 IMP dehydrogenase / GMP reductase signature. 298 310 - T 14-10-2018 IPR015875 IMP dehydrogenase / GMP reductase, conserved site GO:0016491|GO:0055114 Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 SMART SM00116 161 209 1.3E-10 T 14-10-2018 IPR000644 CBS domain Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 SMART SM00116 100 148 7.8E-8 T 14-10-2018 IPR000644 CBS domain Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 Pfam PF00478 IMP dehydrogenase / GMP reductase domain 12 477 8.9E-157 T 14-10-2018 IPR001093 IMP dehydrogenase/GMP reductase GO:0003824|GO:0055114 Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 SUPERFAMILY SSF54631 93 207 1.52E-28 T 14-10-2018 Amico_0977 ac037b6d04ccdc78e9ff97c54b89ba2a 491 Hamap MF_01964 Inosine-5'-monophosphate dehydrogenase [guaB]. 12 490 82.634 T 14-10-2018 IPR005990 Inosine-5'-monophosphate dehydrogenase GO:0003938|GO:0006164|GO:0055114 KEGG: 00230+1.1.1.205|KEGG: 00983+1.1.1.205|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-7221|Reactome: R-HSA-6798695|Reactome: R-HSA-73817 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 PIRSF PIRSF000722 1 398 1.0E-154 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 SUPERFAMILY SSF53067 159 395 3.45E-91 T 14-10-2018 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 PRINTS PR00471 Acetate kinase family signature 301 314 2.5E-44 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 PRINTS PR00471 Acetate kinase family signature 174 187 2.5E-44 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 PRINTS PR00471 Acetate kinase family signature 204 225 2.5E-44 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 PRINTS PR00471 Acetate kinase family signature 3 14 2.5E-44 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 PRINTS PR00471 Acetate kinase family signature 377 389 2.5E-44 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 PRINTS PR00471 Acetate kinase family signature 323 339 2.5E-44 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 Gene3D G3DSA:3.30.420.40 1 196 2.9E-75 T 14-10-2018 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 204 221 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 TIGRFAM TIGR00016 ackA: acetate kinase 1 394 1.7E-162 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 SUPERFAMILY SSF53067 1 196 2.52E-70 T 14-10-2018 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 Hamap MF_00020 Acetate kinase [ackA]. 1 398 193.364 T 14-10-2018 IPR004372 Acetate/propionate kinase GO:0006082|GO:0016301|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 3 14 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 Gene3D G3DSA:3.30.420.40 197 398 2.4E-85 T 14-10-2018 Amico_1071 7dc98470abdc973ebc4d36eab7b703df 398 Pfam PF00871 Acetokinase family 2 390 1.2E-158 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_0809 8be68ffff59566b75ba448dbef86b019 207 TIGRFAM TIGR00309 V_ATPase_subD: V-type ATPase, D subunit 5 202 8.9E-46 T 14-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0809 8be68ffff59566b75ba448dbef86b019 207 Pfam PF01813 ATP synthase subunit D 12 201 8.4E-56 T 14-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0809 8be68ffff59566b75ba448dbef86b019 207 Hamap MF_00271 V-type ATP synthase subunit D [atpD]. 3 207 20.43 T 14-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_1067 ba6d828c206f61c252b74939c7c9f85f 332 PIRSF PIRSF002465 1 332 3.1E-116 T 14-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Amico_1067 ba6d828c206f61c252b74939c7c9f85f 332 TIGRFAM TIGR00182 plsX: fatty acid/phospholipid synthesis protein PlsX 2 330 4.7E-106 T 14-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Amico_1067 ba6d828c206f61c252b74939c7c9f85f 332 Hamap MF_00019 Phosphate acyltransferase [plsX]. 1 332 129.651 T 14-10-2018 IPR012281 Phospholipid biosynthesis protein, PlsX-like GO:0006633 Amico_1067 ba6d828c206f61c252b74939c7c9f85f 332 Pfam PF02504 Fatty acid synthesis protein 2 317 3.5E-107 T 14-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 Amico_1067 ba6d828c206f61c252b74939c7c9f85f 332 SUPERFAMILY SSF53659 2 328 4.52E-93 T 14-10-2018 Amico_1067 ba6d828c206f61c252b74939c7c9f85f 332 Gene3D G3DSA:3.40.718.10 1 332 5.4E-123 T 14-10-2018 Amico_1367 1a29548e6de2693c47849a7fbbb2e02a 78 SUPERFAMILY SSF52833 1 73 2.5E-20 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Amico_1367 1a29548e6de2693c47849a7fbbb2e02a 78 Pfam PF00462 Glutaredoxin 2 61 1.8E-18 T 14-10-2018 IPR002109 Glutaredoxin GO:0009055|GO:0015035|GO:0045454 Amico_1367 1a29548e6de2693c47849a7fbbb2e02a 78 TIGRFAM TIGR02196 GlrX_YruB: glutaredoxin-like protein, YruB-family 1 73 4.7E-29 T 14-10-2018 IPR011911 Glutaredoxin-like protein, YruB Amico_1367 1a29548e6de2693c47849a7fbbb2e02a 78 ProSitePatterns PS00195 Glutaredoxin active site. 4 20 - T 14-10-2018 IPR011767 Glutaredoxin active site GO:0009055|GO:0045454 Reactome: R-HSA-499943 Amico_1367 1a29548e6de2693c47849a7fbbb2e02a 78 Gene3D G3DSA:3.40.30.10 1 74 3.1E-23 T 14-10-2018 Amico_1510 be429d34ecc549679a61b61843f7c1df 218 TIGRFAM TIGR03162 ribazole_cobC: alpha-ribazole phosphatase 7 186 2.2E-50 T 14-10-2018 IPR017578 Alpha-ribazole phosphatase, CobC GO:0009236|GO:0043755 KEGG: 00860+3.1.3.73|MetaCyc: PWY-5509|MetaCyc: PWY-6269|MetaCyc: PWY-7961|MetaCyc: PWY-7963|MetaCyc: PWY-7964|MetaCyc: PWY-7965|MetaCyc: PWY-7966|MetaCyc: PWY-7967|MetaCyc: PWY-7968|MetaCyc: PWY-7969|MetaCyc: PWY-7970|MetaCyc: PWY-7975 Amico_1510 be429d34ecc549679a61b61843f7c1df 218 SMART SM00855 6 161 1.5E-22 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Amico_1510 be429d34ecc549679a61b61843f7c1df 218 SUPERFAMILY SSF53254 5 205 2.75E-55 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Amico_1510 be429d34ecc549679a61b61843f7c1df 218 PIRSF PIRSF000709 2 178 3.3E-17 T 14-10-2018 Amico_1510 be429d34ecc549679a61b61843f7c1df 218 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 7 200 6.0E-59 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Amico_1510 be429d34ecc549679a61b61843f7c1df 218 Gene3D G3DSA:3.40.50.1240 5 210 3.5E-63 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Amico_1572 167349eb0913dc0268039fb2c00732c3 189 Gene3D G3DSA:3.40.470.10 4 189 2.7E-67 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Amico_1572 167349eb0913dc0268039fb2c00732c3 189 Pfam PF03167 Uracil DNA glycosylase superfamily 28 181 7.7E-46 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Amico_1572 167349eb0913dc0268039fb2c00732c3 189 SUPERFAMILY SSF52141 5 183 2.94E-58 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Amico_1572 167349eb0913dc0268039fb2c00732c3 189 SMART SM00987 27 182 8.0E-36 T 14-10-2018 Amico_1572 167349eb0913dc0268039fb2c00732c3 189 SMART SM00986 27 182 8.0E-36 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Amico_1572 167349eb0913dc0268039fb2c00732c3 189 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 13 170 1.5E-57 T 14-10-2018 IPR005273 Uracil-DNA glycosylase family 4 Amico_0740 c777f3a73852bf2840b42b6525046699 294 SUPERFAMILY SSF53448 8 277 7.44E-57 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_0740 c777f3a73852bf2840b42b6525046699 294 Gene3D G3DSA:3.90.550.10 1 290 1.3E-78 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_0740 c777f3a73852bf2840b42b6525046699 294 TIGRFAM TIGR01099 galU: UTP--glucose-1-phosphate uridylyltransferase 6 266 3.5E-102 T 14-10-2018 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type GO:0003983|GO:0006011 KEGG: 00040+2.7.7.9|KEGG: 00052+2.7.7.9|KEGG: 00500+2.7.7.9|KEGG: 00520+2.7.7.9|MetaCyc: PWY-3801|MetaCyc: PWY-6527|MetaCyc: PWY-7238|MetaCyc: PWY-7343|MetaCyc: PWY-7817 Amico_0740 c777f3a73852bf2840b42b6525046699 294 Pfam PF00483 Nucleotidyl transferase 14 269 1.1E-24 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Amico_0852 df93b868d125fcaed3b9e427077501ac 74 Hamap MF_00337 Exodeoxyribonuclease 7 small subunit [xseB]. 2 62 13.926 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Amico_0852 df93b868d125fcaed3b9e427077501ac 74 Gene3D G3DSA:1.10.287.1040 1 72 4.5E-19 T 14-10-2018 IPR037004 Exonuclease VII, small subunit superfamily GO:0006308|GO:0008855|GO:0009318 Amico_0852 df93b868d125fcaed3b9e427077501ac 74 TIGRFAM TIGR01280 xseB: exodeoxyribonuclease VII, small subunit 2 53 1.6E-18 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Amico_0852 df93b868d125fcaed3b9e427077501ac 74 SUPERFAMILY SSF116842 1 62 5.62E-17 T 14-10-2018 Amico_0852 df93b868d125fcaed3b9e427077501ac 74 PIRSF PIRSF006488 1 74 7.9E-19 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Amico_0852 df93b868d125fcaed3b9e427077501ac 74 Pfam PF02609 Exonuclease VII small subunit 3 52 1.3E-17 T 14-10-2018 IPR003761 Exonuclease VII, small subunit GO:0006308|GO:0008855|GO:0009318 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 SUPERFAMILY SSF52313 6 231 2.49E-96 T 14-10-2018 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 TIGRFAM TIGR01011 rpsB_bact: ribosomal protein uS2 3 226 8.0E-106 T 14-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 Hamap MF_00291_B 30S ribosomal protein S2 [rpsB]. 2 225 42.394 T 14-10-2018 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 ProSitePatterns PS00962 Ribosomal protein S2 signature 1. 6 17 - T 14-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 Gene3D G3DSA:1.10.287.610 97 152 2.3E-92 T 14-10-2018 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 Gene3D G3DSA:3.40.50.10490 10 213 2.3E-92 T 14-10-2018 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 PRINTS PR00395 Ribosomal protein S2 signature 87 104 2.2E-40 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 PRINTS PR00395 Ribosomal protein S2 signature 158 175 2.2E-40 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 PRINTS PR00395 Ribosomal protein S2 signature 6 24 2.2E-40 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 PRINTS PR00395 Ribosomal protein S2 signature 196 210 2.2E-40 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 PRINTS PR00395 Ribosomal protein S2 signature 37 46 2.2E-40 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 PRINTS PR00395 Ribosomal protein S2 signature 175 186 2.2E-40 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 ProSitePatterns PS00963 Ribosomal protein S2 signature 2. 158 182 - T 14-10-2018 IPR018130 Ribosomal protein S2, conserved site GO:0003735|GO:0005840|GO:0006412 Amico_1189 1df58cc0a85cfd88dcbb95875aa3843e 266 Pfam PF00318 Ribosomal protein S2 9 224 9.6E-97 T 14-10-2018 IPR001865 Ribosomal protein S2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_1187 87db438e0becb049ee365dc238513d8d 243 Pfam PF00696 Amino acid kinase family 3 212 1.2E-33 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Amico_1187 87db438e0becb049ee365dc238513d8d 243 SUPERFAMILY SSF53633 2 234 1.17E-70 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Amico_1187 87db438e0becb049ee365dc238513d8d 243 TIGRFAM TIGR02075 pyrH_bact: UMP kinase 3 233 1.5E-95 T 14-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 Amico_1187 87db438e0becb049ee365dc238513d8d 243 PRINTS PR00474 Glutamate 5-kinase family signature 137 164 2.7E-5 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Amico_1187 87db438e0becb049ee365dc238513d8d 243 PRINTS PR00474 Glutamate 5-kinase family signature 2 16 2.7E-5 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Amico_1187 87db438e0becb049ee365dc238513d8d 243 PIRSF PIRSF005650 1 243 9.0E-92 T 14-10-2018 IPR011817 Uridylate kinase GO:0006221|GO:0009041 KEGG: 00240+2.7.4.22 Amico_1187 87db438e0becb049ee365dc238513d8d 243 Hamap MF_01220_B Uridylate kinase [pyrH]. 1 234 42.572 T 14-10-2018 IPR015963 Uridylate kinase, bacteria GO:0005737|GO:0006221|GO:0033862 KEGG: 00240+2.7.4.22 Amico_1187 87db438e0becb049ee365dc238513d8d 243 Gene3D G3DSA:3.40.1160.10 1 240 7.2E-81 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Amico_1851 ca8d92ce557d3e894eaa39c2eeb17f20 296 TIGRFAM TIGR00180 parB_part: ParB/RepB/Spo0J family partition protein 30 204 1.6E-55 T 14-10-2018 IPR004437 ParB/RepB/Spo0J partition protein family GO:0003677 Amico_1851 ca8d92ce557d3e894eaa39c2eeb17f20 296 SMART SM00470 33 122 7.5E-36 T 14-10-2018 IPR003115 ParB/Sulfiredoxin Amico_1851 ca8d92ce557d3e894eaa39c2eeb17f20 296 SUPERFAMILY SSF109709 115 225 1.78E-31 T 14-10-2018 Amico_1851 ca8d92ce557d3e894eaa39c2eeb17f20 296 SUPERFAMILY SSF110849 34 124 1.18E-27 T 14-10-2018 IPR036086 ParB/Sulfiredoxin superfamily Amico_1851 ca8d92ce557d3e894eaa39c2eeb17f20 296 Gene3D G3DSA:1.10.10.2830 109 223 1.7E-33 T 14-10-2018 Amico_1851 ca8d92ce557d3e894eaa39c2eeb17f20 296 Gene3D G3DSA:3.90.1530.30 46 107 6.6E-28 T 14-10-2018 Amico_1851 ca8d92ce557d3e894eaa39c2eeb17f20 296 Pfam PF02195 ParB-like nuclease domain 34 122 1.1E-26 T 14-10-2018 IPR003115 ParB/Sulfiredoxin Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 Pfam PF01926 50S ribosome-binding GTPase 176 294 2.4E-25 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 Pfam PF01926 50S ribosome-binding GTPase 4 119 1.1E-28 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 177 197 7.5E-6 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 247 265 7.5E-6 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 SUPERFAMILY SSF52540 137 433 2.74E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 TIGRFAM TIGR03594 GTPase_EngA: ribosome-associated GTPase EngA 2 433 2.3E-160 T 14-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 Gene3D G3DSA:3.40.50.300 170 347 7.8E-52 T 14-10-2018 Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 Gene3D G3DSA:3.40.50.300 1 159 9.3E-44 T 14-10-2018 Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 Pfam PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal 352 433 4.3E-27 T 14-10-2018 IPR032859 GTPase Der, C-terminal KH-domain-like Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 SUPERFAMILY SSF52540 4 168 4.2E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 Gene3D G3DSA:3.30.300.20 348 436 4.0E-30 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 PIRSF PIRSF006485 1 436 1.4E-159 T 14-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 4 157 5.9E-23 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 174 343 2.2E-26 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_1080 08c36be0924384d0d71d9bb8f6aecbbf 436 Hamap MF_00195 GTPase Der [der]. 1 436 38.095 T 14-10-2018 IPR016484 GTP-binding protein EngA GO:0005525 Amico_1785 f3e37c0f48701d4b8176c16efe510485 418 Gene3D G3DSA:3.40.640.10 38 288 2.7E-182 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1785 f3e37c0f48701d4b8176c16efe510485 418 SUPERFAMILY SSF53383 6 415 2.75E-176 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1785 f3e37c0f48701d4b8176c16efe510485 418 Pfam PF00464 Serine hydroxymethyltransferase 9 385 2.2E-169 T 14-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Amico_1785 f3e37c0f48701d4b8176c16efe510485 418 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 223 239 - T 14-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Amico_1785 f3e37c0f48701d4b8176c16efe510485 418 PIRSF PIRSF000412 1 418 5.9E-166 T 14-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Amico_1785 f3e37c0f48701d4b8176c16efe510485 418 Gene3D G3DSA:3.90.1150.10 11 395 2.7E-182 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1785 f3e37c0f48701d4b8176c16efe510485 418 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 8 416 51.97 T 14-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Amico_0014 09e881381423f883ca0b543c29300d96 404 SUPERFAMILY SSF55021 330 400 7.63E-16 T 14-10-2018 Amico_0014 09e881381423f883ca0b543c29300d96 404 Pfam PF00696 Amino acid kinase family 2 226 7.1E-52 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Amico_0014 09e881381423f883ca0b543c29300d96 404 Gene3D G3DSA:3.30.2130.10 244 404 4.5E-43 T 14-10-2018 Amico_0014 09e881381423f883ca0b543c29300d96 404 TIGRFAM TIGR00657 asp_kinases: aspartate kinase 61 397 8.9E-100 T 14-10-2018 IPR001341 Aspartate kinase GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Amico_0014 09e881381423f883ca0b543c29300d96 404 SUPERFAMILY SSF55021 246 317 8.3E-11 T 14-10-2018 Amico_0014 09e881381423f883ca0b543c29300d96 404 ProSitePatterns PS00324 Aspartokinase signature. 3 11 - T 14-10-2018 IPR018042 Aspartate kinase, conserved site GO:0004072|GO:0008652 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Amico_0014 09e881381423f883ca0b543c29300d96 404 PIRSF PIRSF000726 54 404 2.8E-101 T 14-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Amico_0014 09e881381423f883ca0b543c29300d96 404 PIRSF PIRSF000726 1 59 2.5E-17 T 14-10-2018 IPR005260 Aspartate kinase, monofunctional class GO:0004072|GO:0009089 KEGG: 00260+2.7.2.4|KEGG: 00261+2.7.2.4|KEGG: 00270+2.7.2.4|KEGG: 00300+2.7.2.4|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Amico_0014 09e881381423f883ca0b543c29300d96 404 Pfam PF13840 ACT domain 333 393 1.1E-10 T 14-10-2018 IPR027795 CASTOR, ACT domain Amico_0014 09e881381423f883ca0b543c29300d96 404 Gene3D G3DSA:3.40.1160.10 1 243 1.2E-84 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Amico_0014 09e881381423f883ca0b543c29300d96 404 SUPERFAMILY SSF53633 2 239 1.2E-69 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Amico_0074 b041699325e6a72d41199d42392fbe58 448 Gene3D G3DSA:3.30.70.20 188 273 8.9E-8 T 14-10-2018 Amico_0074 b041699325e6a72d41199d42392fbe58 448 Pfam PF12801 4Fe-4S binding domain 64 106 4.1E-15 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_0074 b041699325e6a72d41199d42392fbe58 448 Pfam PF12801 4Fe-4S binding domain 167 212 6.6E-8 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_0074 b041699325e6a72d41199d42392fbe58 448 Pfam PF12801 4Fe-4S binding domain 41 62 94.0 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_0074 b041699325e6a72d41199d42392fbe58 448 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 244 255 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_0074 b041699325e6a72d41199d42392fbe58 448 SUPERFAMILY SSF54862 75 264 1.13E-18 T 14-10-2018 Amico_1496 3c8f8a44af49d43d7d86d2a872fd18cd 584 Gene3D G3DSA:1.20.1560.10 1 325 5.2E-90 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Amico_1496 3c8f8a44af49d43d7d86d2a872fd18cd 584 SUPERFAMILY SSF52540 327 574 6.45E-92 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1496 3c8f8a44af49d43d7d86d2a872fd18cd 584 Pfam PF00005 ABC transporter 354 503 8.7E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1496 3c8f8a44af49d43d7d86d2a872fd18cd 584 ProSitePatterns PS00211 ABC transporters family signature. 475 489 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1496 3c8f8a44af49d43d7d86d2a872fd18cd 584 SMART SM00382 363 549 1.1E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1496 3c8f8a44af49d43d7d86d2a872fd18cd 584 Gene3D G3DSA:3.40.50.300 334 583 6.8E-93 T 14-10-2018 Amico_1496 3c8f8a44af49d43d7d86d2a872fd18cd 584 SUPERFAMILY SSF90123 9 325 9.81E-82 T 14-10-2018 IPR036640 ABC transporter type 1, transmembrane domain superfamily GO:0005524|GO:0016021 Amico_1496 3c8f8a44af49d43d7d86d2a872fd18cd 584 Pfam PF00664 ABC transporter transmembrane region 22 291 8.6E-52 T 14-10-2018 IPR011527 ABC transporter type 1, transmembrane domain GO:0005524|GO:0016021|GO:0042626|GO:0055085 Amico_0888 25cb4de1d89b64f28820bf078d928377 139 Pfam PF02310 B12 binding domain 6 118 8.5E-25 T 14-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Amico_0888 25cb4de1d89b64f28820bf078d928377 139 Gene3D G3DSA:3.40.50.280 1 139 2.0E-57 T 14-10-2018 Amico_0888 25cb4de1d89b64f28820bf078d928377 139 TIGRFAM TIGR00640 acid_CoA_mut_C: methylmalonyl-CoA mutase C-terminal domain 4 134 8.4E-49 T 14-10-2018 IPR006159 Methylmalonyl-CoA mutase, C-terminal GO:0016853 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Amico_0888 25cb4de1d89b64f28820bf078d928377 139 SUPERFAMILY SSF52242 5 131 2.09E-49 T 14-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 Amico_0313 c38594ee3e502dde4caa02a29c253dca 60 Gene3D G3DSA:1.20.5.1030 1 58 1.1E-20 T 14-10-2018 IPR038379 SecE superfamily Amico_0313 c38594ee3e502dde4caa02a29c253dca 60 Pfam PF00584 SecE/Sec61-gamma subunits of protein translocation complex 6 57 5.9E-19 T 14-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Amico_0313 c38594ee3e502dde4caa02a29c253dca 60 Hamap MF_00422 Protein translocase subunit SecE [secE]. 2 59 12.4 T 14-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Amico_0313 c38594ee3e502dde4caa02a29c253dca 60 ProSitePatterns PS01067 Protein secE/sec61-gamma signature. 7 35 - T 14-10-2018 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit GO:0006605|GO:0006886|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Amico_0313 c38594ee3e502dde4caa02a29c253dca 60 TIGRFAM TIGR00964 secE_bact: preprotein translocase, SecE subunit 5 58 3.9E-18 T 14-10-2018 IPR005807 SecE subunit of protein translocation complex, bacterial-like GO:0009306|GO:0015450|GO:0016021 Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 SUPERFAMILY SSF55874 5 213 5.37E-40 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 Gene3D G3DSA:3.30.1370.100 430 526 3.2E-35 T 14-10-2018 Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 Pfam PF08676 MutL C terminal dimerisation domain 388 527 8.8E-17 T 14-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 SUPERFAMILY SSF118116 387 571 3.53E-30 T 14-10-2018 IPR037198 MutL, C-terminal domain superfamily Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 Gene3D G3DSA:3.30.565.10 1 210 6.7E-53 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 Gene3D G3DSA:2.30.42.20 389 571 3.2E-35 T 14-10-2018 Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 SMART SM01340 208 314 3.6E-16 T 14-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 SMART SM00853 388 529 3.2E-21 T 14-10-2018 IPR014790 MutL, C-terminal, dimerisation GO:0005524|GO:0006298 Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 Pfam PF01119 DNA mismatch repair protein, C-terminal domain 239 311 4.2E-14 T 14-10-2018 IPR013507 DNA mismatch repair protein, S5 domain 2-like GO:0005524|GO:0006298|GO:0030983 Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 Gene3D G3DSA:3.30.230.10 218 314 3.2E-15 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 SUPERFAMILY SSF54211 189 310 2.43E-17 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 Pfam PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 25 117 5.1E-8 T 14-10-2018 Amico_1026 f64f9a4c6d9f8150bad38fbe26624939 573 Hamap MF_00149 DNA mismatch repair protein MutL [mutL]. 1 569 20.441 T 14-10-2018 IPR020667 DNA mismatch repair protein, MutL GO:0006298 Amico_1307 608b81f34a8a95199b86d2fb008e885f 341 PIRSF PIRSF006470 4 341 4.9E-101 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_1307 608b81f34a8a95199b86d2fb008e885f 341 Gene3D G3DSA:3.40.190.170 29 339 4.8E-105 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1307 608b81f34a8a95199b86d2fb008e885f 341 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 45 312 9.5E-89 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_1307 608b81f34a8a95199b86d2fb008e885f 341 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 42 293 9.8E-83 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 Gene3D G3DSA:3.30.70.1320 134 325 0.0 T 14-10-2018 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 SUPERFAMILY SSF82693 554 655 2.88E-9 T 14-10-2018 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 Gene3D G3DSA:3.30.70.1440 661 858 0.0 T 14-10-2018 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 SUPERFAMILY SSF82866 798 1023 5.36E-54 T 14-10-2018 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 Gene3D G3DSA:3.30.70.1430 555 660 0.0 T 14-10-2018 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 SUPERFAMILY SSF82693 135 321 5.23E-15 T 14-10-2018 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 Gene3D G3DSA:3.30.70.1430 40 809 0.0 T 14-10-2018 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 Pfam PF00873 AcrB/AcrD/AcrF family 5 1018 3.4E-256 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 SUPERFAMILY SSF82714 713 800 4.97E-16 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 Gene3D G3DSA:3.30.2090.10 177 267 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 PRINTS PR00702 Acriflavin resistance protein family signature 462 485 4.2E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 PRINTS PR00702 Acriflavin resistance protein family signature 329 352 4.2E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 PRINTS PR00702 Acriflavin resistance protein family signature 437 460 4.2E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 PRINTS PR00702 Acriflavin resistance protein family signature 356 377 4.2E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.2E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.2E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 PRINTS PR00702 Acriflavin resistance protein family signature 384 408 4.2E-42 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 SUPERFAMILY SSF82693 40 131 1.39E-21 T 14-10-2018 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 SUPERFAMILY SSF82866 288 489 2.22E-41 T 14-10-2018 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 Gene3D G3DSA:1.20.1640.10 501 1015 0.0 T 14-10-2018 Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 Gene3D G3DSA:3.30.2090.10 712 801 0.0 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 SUPERFAMILY SSF82714 181 263 6.93E-16 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_0304 71cd63adfc534ccb0fdfd9bb174742a5 1034 Gene3D G3DSA:1.20.1640.10 10 500 0.0 T 14-10-2018 Amico_0245 151ac203cc2629ec5f3b3e9eeed17710 159 Gene3D G3DSA:3.40.50.2020 8 157 4.7E-44 T 14-10-2018 Amico_0245 151ac203cc2629ec5f3b3e9eeed17710 159 Pfam PF00156 Phosphoribosyl transferase domain 14 145 1.4E-17 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Amico_0245 151ac203cc2629ec5f3b3e9eeed17710 159 SUPERFAMILY SSF53271 6 147 4.09E-34 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Amico_0245 151ac203cc2629ec5f3b3e9eeed17710 159 Hamap MF_01903 Xanthine phosphoribosyltransferase [gpt]. 7 158 39.455 T 14-10-2018 IPR023747 Xanthine-guanine phosphoribosyltransferase GO:0000310 KEGG: 00230+2.4.2.22 Amico_1078 aa5f609fe85d5351b51e5229dd9cef4c 276 Gene3D G3DSA:1.10.8.100 204 269 5.2E-14 T 14-10-2018 IPR023165 rRNA adenine dimethylase-like Reactome: R-HSA-2151201|Reactome: R-HSA-6793080 Amico_1078 aa5f609fe85d5351b51e5229dd9cef4c 276 ProSitePatterns PS01131 Ribosomal RNA adenine dimethylases signature. 38 66 - T 14-10-2018 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site GO:0000154|GO:0000179|GO:0008649 Amico_1078 aa5f609fe85d5351b51e5229dd9cef4c 276 Gene3D G3DSA:3.40.50.150 1 198 3.7E-59 T 14-10-2018 Amico_1078 aa5f609fe85d5351b51e5229dd9cef4c 276 Pfam PF00398 Ribosomal RNA adenine dimethylase 6 266 1.4E-49 T 14-10-2018 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm Amico_1078 aa5f609fe85d5351b51e5229dd9cef4c 276 TIGRFAM TIGR00755 ksgA: ribosomal RNA small subunit methyltransferase A 6 264 1.5E-64 T 14-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Amico_1078 aa5f609fe85d5351b51e5229dd9cef4c 276 SMART SM00650 22 197 4.2E-50 T 14-10-2018 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal GO:0000154|GO:0000179|GO:0008649 Amico_1078 aa5f609fe85d5351b51e5229dd9cef4c 276 Hamap MF_00607 Ribosomal RNA small subunit methyltransferase A [rsmA]. 6 267 41.418 T 14-10-2018 IPR011530 Ribosomal RNA adenine dimethylase GO:0000179|GO:0006364 Amico_1078 aa5f609fe85d5351b51e5229dd9cef4c 276 SUPERFAMILY SSF53335 2 267 3.23E-59 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_1700 ba77be13b123f66a38662cf6d6de557f 297 Pfam PF13714 Phosphoenolpyruvate phosphomutase 15 256 7.7E-60 T 14-10-2018 Amico_1700 ba77be13b123f66a38662cf6d6de557f 297 ProSitePatterns PS00161 Isocitrate lyase signature. 118 123 - T 14-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 Amico_1700 ba77be13b123f66a38662cf6d6de557f 297 SUPERFAMILY SSF51621 3 293 7.63E-93 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Amico_1700 ba77be13b123f66a38662cf6d6de557f 297 Gene3D G3DSA:3.20.20.60 5 294 3.6E-101 T 14-10-2018 Amico_1560 2450038b9fada7f2c977833ab7c85a58 231 Gene3D G3DSA:1.10.3720.10 2 229 3.9E-31 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1560 2450038b9fada7f2c977833ab7c85a58 231 SUPERFAMILY SSF161098 17 223 1.11E-31 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1560 2450038b9fada7f2c977833ab7c85a58 231 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 44 223 4.5E-12 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_1339 d6dcbff396fdcfbac34297de69415697 244 PIRSF PIRSF026671 4 235 6.7E-47 T 14-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 Amico_1339 d6dcbff396fdcfbac34297de69415697 244 Gene3D G3DSA:3.30.1380.10 41 225 1.3E-51 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Amico_1339 d6dcbff396fdcfbac34297de69415697 244 Pfam PF01427 D-ala-D-ala dipeptidase 67 223 4.4E-26 T 14-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 Amico_1339 d6dcbff396fdcfbac34297de69415697 244 Hamap MF_01924 D-alanyl-D-alanine dipeptidase [ddpX]. 20 229 25.616 T 14-10-2018 IPR000755 D-alanyl-D-alanine dipeptidase GO:0005618|GO:0006508|GO:0008237|GO:0016805 MetaCyc: PWY-6454|MetaCyc: PWY-6455 Amico_1339 d6dcbff396fdcfbac34297de69415697 244 SUPERFAMILY SSF55166 26 228 3.14E-47 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Amico_0617 76a36fabeae8a23d6542011bbd0e4644 378 TIGRFAM TIGR00430 Q_tRNA_tgt: tRNA-guanine transglycosylase 4 365 2.4E-156 T 14-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Amico_0617 76a36fabeae8a23d6542011bbd0e4644 378 SUPERFAMILY SSF51713 1 364 9.16E-156 T 14-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Amico_0617 76a36fabeae8a23d6542011bbd0e4644 378 TIGRFAM TIGR00449 tgt_general: tRNA-guanine family transglycosylase 4 365 1.4E-149 T 14-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Amico_0617 76a36fabeae8a23d6542011bbd0e4644 378 Gene3D G3DSA:3.20.20.105 1 373 2.0E-165 T 14-10-2018 IPR036511 Queuine tRNA-ribosyltransferase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Amico_0617 76a36fabeae8a23d6542011bbd0e4644 378 Hamap MF_00168 Queuine tRNA-ribosyltransferase [tgt]. 2 365 55.045 T 14-10-2018 IPR004803 tRNA-guanine transglycosylase GO:0008479|GO:0101030 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Amico_0617 76a36fabeae8a23d6542011bbd0e4644 378 Pfam PF01702 Queuine tRNA-ribosyltransferase 130 362 9.0E-90 T 14-10-2018 IPR002616 tRNA-guanine(15) transglycosylase-like GO:0006400|GO:0016763 MetaCyc: PWY-6700|Reactome: R-HSA-6782315 Amico_0308 20c6b952a6e96b8c0bd66129e9ecb246 477 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 422 436 2.4E-7 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_0308 20c6b952a6e96b8c0bd66129e9ecb246 477 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 452 464 2.4E-7 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_0308 20c6b952a6e96b8c0bd66129e9ecb246 477 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 436 452 2.4E-7 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_0308 20c6b952a6e96b8c0bd66129e9ecb246 477 SUPERFAMILY SSF46894 408 474 1.9E-14 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Amico_0308 20c6b952a6e96b8c0bd66129e9ecb246 477 SMART SM00421 419 476 1.6E-11 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_0308 20c6b952a6e96b8c0bd66129e9ecb246 477 Gene3D G3DSA:1.10.10.10 422 477 2.8E-15 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0308 20c6b952a6e96b8c0bd66129e9ecb246 477 Pfam PF00196 Bacterial regulatory proteins, luxR family 422 472 1.9E-10 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1024 3d25607c91de69baa0f3c7b8ba596ef6 279 Pfam PF02401 LytB protein 4 275 7.1E-88 T 14-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Amico_1024 3d25607c91de69baa0f3c7b8ba596ef6 279 TIGRFAM TIGR00216 ispH_lytB: 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 3 275 9.0E-85 T 14-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Amico_1024 3d25607c91de69baa0f3c7b8ba596ef6 279 Gene3D G3DSA:3.40.1010.20 5 272 2.1E-95 T 14-10-2018 Amico_1024 3d25607c91de69baa0f3c7b8ba596ef6 279 Gene3D G3DSA:3.40.1010.20 96 192 2.1E-95 T 14-10-2018 Amico_1024 3d25607c91de69baa0f3c7b8ba596ef6 279 Hamap MF_00191 4-hydroxy-3-methylbut-2-enyl diphosphate reductase [ispH]. 2 279 31.13 T 14-10-2018 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GO:0019288|GO:0046872|GO:0050992|GO:0051745 KEGG: 00900+1.17.7.4|MetaCyc: PWY-7560 Amico_1024 3d25607c91de69baa0f3c7b8ba596ef6 279 Gene3D G3DSA:3.40.50.11270 13 95 2.1E-95 T 14-10-2018 Amico_0871 139ac09ac115828a83268b70cd784042 356 Pfam PF04551 GcpE protein 6 346 2.5E-104 T 14-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Amico_0871 139ac09ac115828a83268b70cd784042 356 TIGRFAM TIGR00612 ispG_gcpE: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase 6 337 2.8E-90 T 14-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Amico_0871 139ac09ac115828a83268b70cd784042 356 SUPERFAMILY SSF56014 259 328 3.27E-8 T 14-10-2018 Amico_0871 139ac09ac115828a83268b70cd784042 356 SUPERFAMILY SSF51717 33 207 4.87E-8 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Amico_0871 139ac09ac115828a83268b70cd784042 356 Gene3D G3DSA:3.20.20.20 2 254 7.5E-75 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Amico_0871 139ac09ac115828a83268b70cd784042 356 Hamap MF_00159 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (ferredoxin) [ispG]. 1 350 26.162 T 14-10-2018 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type GO:0016114|GO:0046429|GO:0055114 KEGG: 00900+1.17.7.3 Amico_0871 139ac09ac115828a83268b70cd784042 356 Gene3D G3DSA:3.30.413.10 255 355 8.6E-29 T 14-10-2018 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 Hamap MF_00283 Phenylalanine--tRNA ligase beta subunit [pheT]. 1 796 35.094 T 14-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 SUPERFAMILY SSF50249 41 192 1.03E-27 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0710 809bbc35b66586ddce40bad978637f2b 801 Gene3D G3DSA:3.30.930.10 495 701 1.9E-43 T 14-10-2018 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 Gene3D G3DSA:3.30.70.380 711 801 2.2E-28 T 14-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 SUPERFAMILY SSF56037 213 391 3.4E-54 T 14-10-2018 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 Gene3D G3DSA:3.30.56.10 406 479 4.0E-15 T 14-10-2018 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 Gene3D G3DSA:3.50.40.10 198 402 3.6E-65 T 14-10-2018 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 KEGG: 00970+6.1.1.20 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 SMART SM00873 216 389 4.8E-66 T 14-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 SUPERFAMILY SSF54991 705 796 4.84E-26 T 14-10-2018 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily KEGG: 00970+6.1.1.20 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 TIGRFAM TIGR00472 pheT_bact: phenylalanine--tRNA ligase, beta subunit 1 796 2.2E-194 T 14-10-2018 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit GO:0000287|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 Gene3D G3DSA:2.40.50.140 39 155 4.0E-52 T 14-10-2018 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 Pfam PF03484 tRNA synthetase B5 domain 425 475 7.0E-12 T 14-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 SUPERFAMILY SSF46955 424 479 1.74E-10 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily Amico_0710 809bbc35b66586ddce40bad978637f2b 801 SMART SM00874 406 475 3.7E-14 T 14-10-2018 IPR005147 tRNA synthetase, B5-domain GO:0000287|GO:0003723|GO:0005524|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 Pfam PF03483 B3/4 domain 217 386 1.3E-51 T 14-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 SUPERFAMILY SSF55681 471 698 8.78E-40 T 14-10-2018 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 Pfam PF01588 Putative tRNA binding domain 45 146 1.3E-10 T 14-10-2018 IPR002547 tRNA-binding domain GO:0000049 Reactome: R-HSA-379716 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 Pfam PF03147 Ferredoxin-fold anticodon binding domain 710 801 1.1E-24 T 14-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 SMART SM00896 709 801 4.6E-33 T 14-10-2018 IPR005121 Ferrodoxin-fold anticodon-binding domain KEGG: 00970+6.1.1.20 Amico_0710 809bbc35b66586ddce40bad978637f2b 801 Gene3D G3DSA:3.30.56.10 4 182 4.0E-52 T 14-10-2018 Amico_1000 1ab29d2444215bd0cd3b2d040d98ec61 369 TIGRFAM TIGR00227 ribD_Cterm: riboflavin-specific deaminase C-terminal domain 151 360 6.3E-52 T 14-10-2018 IPR011549 Riboflavin-specific deaminase, C-terminal GO:0008703|GO:0009231|GO:0050661|GO:0055114 Amico_1000 1ab29d2444215bd0cd3b2d040d98ec61 369 SUPERFAMILY SSF53927 9 150 2.45E-45 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Amico_1000 1ab29d2444215bd0cd3b2d040d98ec61 369 PIRSF PIRSF006769 4 365 1.8E-124 T 14-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 Amico_1000 1ab29d2444215bd0cd3b2d040d98ec61 369 SUPERFAMILY SSF53597 151 359 4.84E-54 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Amico_1000 1ab29d2444215bd0cd3b2d040d98ec61 369 Gene3D G3DSA:3.40.430.10 142 365 1.1E-68 T 14-10-2018 IPR024072 Dihydrofolate reductase-like domain superfamily Reactome: R-HSA-196757 Amico_1000 1ab29d2444215bd0cd3b2d040d98ec61 369 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 7 106 2.1E-19 T 14-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Amico_1000 1ab29d2444215bd0cd3b2d040d98ec61 369 Gene3D G3DSA:3.40.140.10 1 141 1.5E-44 T 14-10-2018 Amico_1000 1ab29d2444215bd0cd3b2d040d98ec61 369 Pfam PF01872 RibD C-terminal domain 153 357 2.3E-46 T 14-10-2018 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal GO:0008703|GO:0009231|GO:0055114 Amico_1000 1ab29d2444215bd0cd3b2d040d98ec61 369 TIGRFAM TIGR00326 eubact_ribD: riboflavin biosynthesis protein RibD 13 358 1.1E-101 T 14-10-2018 IPR004794 Riboflavin biosynthesis protein RibD GO:0008835|GO:0009231|GO:0055114 KEGG: 00740+3.5.4.26+1.1.1.193|MetaCyc: PWY-7991 Amico_1000 1ab29d2444215bd0cd3b2d040d98ec61 369 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 56 94 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Amico_1670 1fbb4b4ff2b343b27dde4b4bc85ee1b0 383 SUPERFAMILY SSF51604 96 361 7.47E-80 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Amico_1670 1fbb4b4ff2b343b27dde4b4bc85ee1b0 383 Gene3D G3DSA:3.30.390.10 12 374 9.6E-149 T 14-10-2018 IPR029017 Enolase-like, N-terminal Amico_1670 1fbb4b4ff2b343b27dde4b4bc85ee1b0 383 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 17 108 1.4E-23 T 14-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Amico_1670 1fbb4b4ff2b343b27dde4b4bc85ee1b0 383 ProSitePatterns PS00909 Mandelate racemase / muconate lactonizing enzyme family signature 2. 181 212 - T 14-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 Amico_1670 1fbb4b4ff2b343b27dde4b4bc85ee1b0 383 SMART SM00922 126 231 2.9E-18 T 14-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Amico_1670 1fbb4b4ff2b343b27dde4b4bc85ee1b0 383 Gene3D G3DSA:3.20.20.120 103 345 9.6E-149 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Amico_1670 1fbb4b4ff2b343b27dde4b4bc85ee1b0 383 Pfam PF13378 Enolase C-terminal domain-like 129 357 5.1E-63 T 14-10-2018 IPR029065 Enolase C-terminal domain-like Amico_1670 1fbb4b4ff2b343b27dde4b4bc85ee1b0 383 SUPERFAMILY SSF54826 4 112 1.3E-30 T 14-10-2018 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 Gene3D G3DSA:3.40.50.620 123 432 1.1E-173 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 133 142 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 Pfam PF00750 tRNA synthetases class I (R) 110 402 1.3E-22 T 14-10-2018 IPR035684 Arginyl-tRNA synthetase, catalytic core domain KEGG: 00970+6.1.1.19 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 Gene3D G3DSA:1.10.730.10 433 558 1.1E-173 T 14-10-2018 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 SUPERFAMILY SSF55190 8 114 4.71E-24 T 14-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 PRINTS PR01038 Arginyl-tRNA synthetase signature 138 154 7.2E-22 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 PRINTS PR01038 Arginyl-tRNA synthetase signature 162 175 7.2E-22 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 PRINTS PR01038 Arginyl-tRNA synthetase signature 123 138 7.2E-22 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 PRINTS PR01038 Arginyl-tRNA synthetase signature 307 328 7.2E-22 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 Pfam PF05746 DALR anticodon binding domain 438 558 1.6E-32 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 TIGRFAM TIGR00456 argS: arginine--tRNA ligase 8 558 3.2E-142 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 SMART SM01016 6 94 1.7E-32 T 14-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 Pfam PF03485 Arginyl tRNA synthetase N terminal domain 8 94 5.4E-24 T 14-10-2018 IPR005148 Arginyl tRNA synthetase N-terminal domain GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19|Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 SUPERFAMILY SSF47323 433 558 3.92E-34 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 Gene3D G3DSA:3.30.1360.70 3 112 3.9E-27 T 14-10-2018 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily GO:0000166|GO:0004814|GO:0005524|GO:0005737|GO:0006420 KEGG: 00970+6.1.1.19 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 SUPERFAMILY SSF52374 117 449 1.84E-96 T 14-10-2018 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 SMART SM00836 438 558 1.6E-47 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Amico_1424 71b577e1a5ef2ba529b94c7ebcf65c2d 558 Hamap MF_00123 Arginine--tRNA ligase [argS]. 6 558 27.152 T 14-10-2018 IPR001278 Arginine-tRNA ligase GO:0004814|GO:0005524|GO:0006420 KEGG: 00970+6.1.1.19 Amico_0450 11253e9f505abc07f746997824076f24 389 SUPERFAMILY SSF116734 3 185 2.62E-37 T 14-10-2018 Amico_0450 11253e9f505abc07f746997824076f24 389 Gene3D G3DSA:3.90.220.20 2 166 7.2E-35 T 14-10-2018 Amico_0450 11253e9f505abc07f746997824076f24 389 Gene3D G3DSA:3.90.220.20 192 336 1.6E-25 T 14-10-2018 Amico_0450 11253e9f505abc07f746997824076f24 389 SUPERFAMILY SSF116734 196 384 8.83E-27 T 14-10-2018 Amico_0450 11253e9f505abc07f746997824076f24 389 Pfam PF01420 Type I restriction modification DNA specificity domain 5 172 2.8E-24 T 14-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 Amico_0450 11253e9f505abc07f746997824076f24 389 Pfam PF01420 Type I restriction modification DNA specificity domain 202 339 3.9E-16 T 14-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 Amico_0316 4deb422bf996a8e1577f09bd4395c739 236 Hamap MF_01318_B 50S ribosomal protein L1 [rplA]. 2 229 42.811 T 14-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Amico_0316 4deb422bf996a8e1577f09bd4395c739 236 ProSitePatterns PS01199 Ribosomal protein L1 signature. 121 139 - T 14-10-2018 IPR023673 Ribosomal protein L1, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0316 4deb422bf996a8e1577f09bd4395c739 236 Pfam PF00687 Ribosomal protein L1p/L10e family 31 220 1.2E-51 T 14-10-2018 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein Amico_0316 4deb422bf996a8e1577f09bd4395c739 236 Gene3D G3DSA:3.30.190.20 21 225 2.4E-80 T 14-10-2018 Amico_0316 4deb422bf996a8e1577f09bd4395c739 236 Gene3D G3DSA:3.40.50.790 68 159 2.4E-80 T 14-10-2018 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich Amico_0316 4deb422bf996a8e1577f09bd4395c739 236 TIGRFAM TIGR01169 rplA_bact: ribosomal protein uL1 3 226 1.0E-102 T 14-10-2018 IPR005878 Ribosomal protein L1, bacterial-type GO:0003723|GO:0003735|GO:0006412|GO:0015934 Amico_0316 4deb422bf996a8e1577f09bd4395c739 236 SUPERFAMILY SSF56808 6 225 6.54E-81 T 14-10-2018 IPR023674 Ribosomal protein L1-like Amico_0316 4deb422bf996a8e1577f09bd4395c739 236 PIRSF PIRSF002155 1 227 2.0E-76 T 14-10-2018 IPR002143 Ribosomal protein L1 GO:0003723|GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 Gene3D G3DSA:3.30.390.10 3 125 6.9E-54 T 14-10-2018 IPR029017 Enolase-like, N-terminal Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 SUPERFAMILY SSF54826 3 136 3.23E-53 T 14-10-2018 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 Pfam PF00113 Enolase, C-terminal TIM barrel domain 140 421 7.5E-123 T 14-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 PIRSF PIRSF001400 1 421 5.7E-184 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 SUPERFAMILY SSF51604 139 411 1.06E-121 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 SMART SM01192 138 426 1.2E-201 T 14-10-2018 IPR020810 Enolase, C-terminal TIM barrel domain KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 Gene3D G3DSA:3.20.20.120 127 426 8.3E-131 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 Pfam PF03952 Enolase, N-terminal domain 4 133 4.6E-56 T 14-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 Hamap MF_00318 Enolase [eno]. 2 410 44.205 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 ProSitePatterns PS00164 Enolase signature. 333 346 - T 14-10-2018 IPR020809 Enolase, conserved site KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 PRINTS PR00148 Enolase signature 37 51 1.9E-47 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 PRINTS PR00148 Enolase signature 106 122 1.9E-47 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 PRINTS PR00148 Enolase signature 362 379 1.9E-47 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 PRINTS PR00148 Enolase signature 310 321 1.9E-47 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 PRINTS PR00148 Enolase signature 333 347 1.9E-47 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 PRINTS PR00148 Enolase signature 160 173 1.9E-47 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 TIGRFAM TIGR01060 eno: phosphopyruvate hydratase 4 422 1.4E-196 T 14-10-2018 IPR000941 Enolase GO:0000015|GO:0000287|GO:0004634|GO:0006096 KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0589 1d43affc888be11a96cca9c13887c7e4 428 SMART SM01193 4 133 1.0E-88 T 14-10-2018 IPR020811 Enolase, N-terminal KEGG: 00010+4.2.1.11|KEGG: 00680+4.2.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1622|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 SUPERFAMILY SSF52518 5 259 1.53E-72 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 SUPERFAMILY SSF52922 260 414 2.04E-50 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 Gene3D G3DSA:3.40.50.920 260 415 1.2E-63 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 Gene3D G3DSA:3.40.50.970 3 259 3.5E-105 T 14-10-2018 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 SMART SM00890 625 684 4.1E-26 T 14-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 270 375 4.4E-14 T 14-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 PIRSF PIRSF000159 1 1185 0.0 T 14-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 TIGRFAM TIGR02176 pyruv_ox_red: pyruvate:ferredoxin (flavodoxin) oxidoreductase 7 1176 0.0 T 14-10-2018 IPR011895 Pyruvate-flavodoxin oxidoreductase GO:0005506|GO:0016903|GO:0022900|GO:0055114 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 Pfam PF13484 4Fe-4S double cluster binding domain 693 762 7.2E-12 T 14-10-2018 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 SUPERFAMILY SSF53323 416 673 2.48E-85 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 SUPERFAMILY SSF54862 670 834 4.33E-24 T 14-10-2018 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 Gene3D G3DSA:3.40.920.10 416 627 1.5E-89 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 Gene3D G3DSA:3.40.50.970 790 1178 6.5E-176 T 14-10-2018 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 426 610 4.7E-32 T 14-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 750 761 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 941 1073 1.1E-11 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 Pfam PF10371 Domain of unknown function 635 683 2.7E-23 T 14-10-2018 IPR019456 Pyruvate-flavodoxin oxidoreductase, EKR domain GO:0016903|GO:0055114 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 19 248 6.0E-74 T 14-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 SUPERFAMILY SSF52518 791 1178 1.0E-135 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 Gene3D G3DSA:4.10.780.10 637 673 3.2E-7 T 14-10-2018 IPR037112 Pyruvate-flavodoxin oxidoreductase, EKR domain superfamily Amico_1077 cb5847ac1f85ec8f3fc169ac9ff9f2a1 1186 Gene3D G3DSA:3.30.70.20 674 788 2.8E-44 T 14-10-2018 Amico_0677 a612f813c0ba34b48f27342e76d248aa 206 Hamap MF_01019 Histidine biosynthesis bifunctional protein HisIE [hisI]. 5 204 35.52 T 14-10-2018 IPR023019 Histidine biosynthesis bifunctional protein HisIE GO:0000105|GO:0004635|GO:0004636 KEGG: 00340+3.6.1.31+3.5.4.19 Amico_0677 a612f813c0ba34b48f27342e76d248aa 206 Pfam PF01503 Phosphoribosyl-ATP pyrophosphohydrolase 120 203 1.1E-15 T 14-10-2018 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like KEGG: 00340+3.6.1.31 Amico_0677 a612f813c0ba34b48f27342e76d248aa 206 SUPERFAMILY SSF141734 4 108 6.93E-45 T 14-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 Amico_0677 a612f813c0ba34b48f27342e76d248aa 206 Hamap MF_01021 Phosphoribosyl-AMP cyclohydrolase [hisI]. 3 106 28.613 T 14-10-2018 IPR026660 Phosphoribosyl-AMP cyclohydrolase GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Amico_0677 a612f813c0ba34b48f27342e76d248aa 206 ProDom PD002610 PHOSPHORIBOSYL-AMP BIOSYNTHESIS CYCLOHYDROLASE HYDROLASE HISTIDINE AMINO-ACID PRA-CH PHOSPHORIBOSYL-ATP BIFUNCTIONAL INCLUDES: 52 101 3.0E-17 T 14-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Amico_0677 a612f813c0ba34b48f27342e76d248aa 206 Hamap MF_01020 Phosphoribosyl-ATP pyrophosphatase [hisE]. 113 199 17.785 T 14-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Amico_0677 a612f813c0ba34b48f27342e76d248aa 206 Gene3D G3DSA:3.10.20.400 1 93 7.0E-38 T 14-10-2018 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily KEGG: 00340+3.5.4.19 Amico_0677 a612f813c0ba34b48f27342e76d248aa 206 Gene3D G3DSA:1.10.287.1080 115 205 6.2E-27 T 14-10-2018 Amico_0677 a612f813c0ba34b48f27342e76d248aa 206 Pfam PF01502 Phosphoribosyl-AMP cyclohydrolase 29 102 3.7E-32 T 14-10-2018 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain GO:0000105|GO:0004635 KEGG: 00340+3.5.4.19 Amico_0677 a612f813c0ba34b48f27342e76d248aa 206 SUPERFAMILY SSF101386 116 203 6.98E-21 T 14-10-2018 Amico_0677 a612f813c0ba34b48f27342e76d248aa 206 TIGRFAM TIGR03188 histidine_hisI: phosphoribosyl-ATP diphosphatase 118 199 1.4E-27 T 14-10-2018 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase GO:0000105|GO:0004636 KEGG: 00340+3.6.1.31 Amico_1341 a1ad4f81539a26fdd79c0986071ea158 174 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 36 153 2.1E-25 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1354 4ee16ef212400d6e85ffc1635eee3dd7 347 Pfam PF00107 Zinc-binding dehydrogenase 172 265 1.1E-15 T 14-10-2018 IPR013149 Alcohol dehydrogenase, C-terminal GO:0055114 Amico_1354 4ee16ef212400d6e85ffc1635eee3dd7 347 Gene3D G3DSA:3.90.180.10 14 329 1.8E-109 T 14-10-2018 Amico_1354 4ee16ef212400d6e85ffc1635eee3dd7 347 SUPERFAMILY SSF50129 2 177 3.35E-48 T 14-10-2018 IPR011032 GroES-like superfamily Amico_1354 4ee16ef212400d6e85ffc1635eee3dd7 347 Pfam PF08240 Alcohol dehydrogenase GroES-like domain 21 124 1.6E-15 T 14-10-2018 IPR013154 Alcohol dehydrogenase, N-terminal GO:0055114 Amico_1354 4ee16ef212400d6e85ffc1635eee3dd7 347 Gene3D G3DSA:3.40.50.720 150 287 1.8E-109 T 14-10-2018 Amico_1354 4ee16ef212400d6e85ffc1635eee3dd7 347 SUPERFAMILY SSF51735 135 307 9.86E-33 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1354 4ee16ef212400d6e85ffc1635eee3dd7 347 ProSitePatterns PS00059 Zinc-containing alcohol dehydrogenases signature. 53 67 - T 14-10-2018 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site GO:0008270|GO:0016491|GO:0055114 Reactome: R-HSA-71384 Amico_1354 4ee16ef212400d6e85ffc1635eee3dd7 347 SMART SM00829 3 346 5.9E-4 T 14-10-2018 IPR020843 Polyketide synthase, enoylreductase domain GO:0016491 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 Gene3D G3DSA:3.40.50.720 233 367 1.8E-33 T 14-10-2018 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 SUPERFAMILY SSF51735 234 378 2.28E-27 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 SUPERFAMILY SSF116726 379 451 2.22E-12 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 Pfam PF02080 TrkA-C domain 386 451 8.8E-13 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 Gene3D G3DSA:3.30.70.1450 373 452 1.3E-14 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 SUPERFAMILY SSF116726 140 224 1.83E-8 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 Gene3D G3DSA:3.40.50.720 2 138 6.3E-42 T 14-10-2018 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 PRINTS PR00335 TrkA potassium uptake protein signature 19 33 3.6E-12 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 PRINTS PR00335 TrkA potassium uptake protein signature 308 322 3.6E-12 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 PRINTS PR00335 TrkA potassium uptake protein signature 295 305 3.6E-12 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 PRINTS PR00335 TrkA potassium uptake protein signature 284 294 3.6E-12 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 PRINTS PR00335 TrkA potassium uptake protein signature 2 16 3.6E-12 T 14-10-2018 IPR006036 Potassium uptake protein TrkA GO:0005886|GO:0006813|GO:0015079 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 Gene3D G3DSA:3.30.70.1450 140 229 1.8E-12 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 Pfam PF02254 TrkA-N domain 3 124 3.0E-21 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 Pfam PF02254 TrkA-N domain 235 353 5.8E-21 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Amico_1287 e2e13a1614fe953d58e0562ab2d981e9 454 SUPERFAMILY SSF51735 1 150 1.53E-29 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0999 4b80b1eaeec1dc1f30a949454ab2f01f 219 Gene3D G3DSA:2.40.30.20 101 204 1.5E-28 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0999 4b80b1eaeec1dc1f30a949454ab2f01f 219 Pfam PF00677 Lumazine binding domain 3 86 7.0E-21 T 14-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Amico_0999 4b80b1eaeec1dc1f30a949454ab2f01f 219 Pfam PF00677 Lumazine binding domain 99 183 2.7E-19 T 14-10-2018 IPR026017 Lumazine-binding domain KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Amico_0999 4b80b1eaeec1dc1f30a949454ab2f01f 219 PIRSF PIRSF000498 1 210 2.4E-65 T 14-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Amico_0999 4b80b1eaeec1dc1f30a949454ab2f01f 219 SUPERFAMILY SSF63380 1 89 4.0E-24 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Amico_0999 4b80b1eaeec1dc1f30a949454ab2f01f 219 SUPERFAMILY SSF63380 92 196 5.19E-29 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Amico_0999 4b80b1eaeec1dc1f30a949454ab2f01f 219 Gene3D G3DSA:2.40.30.20 1 88 2.4E-26 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0999 4b80b1eaeec1dc1f30a949454ab2f01f 219 TIGRFAM TIGR00187 ribE: riboflavin synthase, alpha subunit 1 201 5.5E-61 T 14-10-2018 IPR001783 Lumazine-binding protein KEGG: 00740+2.5.1.9|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 SUPERFAMILY SSF55973 127 246 8.63E-46 T 14-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 Gene3D G3DSA:3.30.300.10 104 390 4.3E-167 T 14-10-2018 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 SUPERFAMILY SSF55973 248 396 7.06E-65 T 14-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 ProSitePatterns PS00376 S-adenosylmethionine synthase signature 1. 130 140 - T 14-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 TIGRFAM TIGR01034 metK: methionine adenosyltransferase 8 396 2.9E-170 T 14-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 PIRSF PIRSF000497 1 400 1.8E-165 T 14-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 ProSitePatterns PS00377 S-adenosylmethionine synthase signature 2. 273 281 - T 14-10-2018 IPR022631 S-adenosylmethionine synthetase, conserved site GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 Pfam PF02773 S-adenosylmethionine synthetase, C-terminal domain 248 387 3.1E-65 T 14-10-2018 IPR022630 S-adenosylmethionine synthetase, C-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 Gene3D G3DSA:3.30.300.10 13 284 4.3E-167 T 14-10-2018 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 Pfam PF02772 S-adenosylmethionine synthetase, central domain 129 245 2.6E-42 T 14-10-2018 IPR022629 S-adenosylmethionine synthetase, central domain GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 Pfam PF00438 S-adenosylmethionine synthetase, N-terminal domain 5 102 5.8E-42 T 14-10-2018 IPR022628 S-adenosylmethionine synthetase, N-terminal GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 Gene3D G3DSA:3.30.300.10 7 247 4.3E-167 T 14-10-2018 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 SUPERFAMILY SSF55973 5 111 2.12E-46 T 14-10-2018 IPR022636 S-adenosylmethionine synthetase superfamily GO:0004478|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Amico_0147 efd81a9e3233bdacf8cb7cee06d8b179 402 Hamap MF_00086 S-adenosylmethionine synthase [metK]. 4 399 55.006 T 14-10-2018 IPR002133 S-adenosylmethionine synthetase GO:0004478|GO:0005524|GO:0006556 KEGG: 00270+2.5.1.6|MetaCyc: PWY-5041|MetaCyc: PWY-5912|Reactome: R-HSA-156581 Amico_0539 c8fef955745d8450f0a66a197c285280 602 Gene3D G3DSA:2.40.50.140 2 116 1.1E-30 T 14-10-2018 Amico_0539 c8fef955745d8450f0a66a197c285280 602 Pfam PF02938 GAD domain 323 412 1.3E-17 T 14-10-2018 IPR029351 GAD domain Reactome: R-HSA-379726 Amico_0539 c8fef955745d8450f0a66a197c285280 602 SUPERFAMILY SSF55261 305 430 7.19E-29 T 14-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Amico_0539 c8fef955745d8450f0a66a197c285280 602 TIGRFAM TIGR00459 aspS_bact: aspartate--tRNA ligase 12 594 1.0E-227 T 14-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 Amico_0539 c8fef955745d8450f0a66a197c285280 602 Gene3D G3DSA:3.30.1360.30 287 431 2.3E-191 T 14-10-2018 IPR004115 GAD-like domain superfamily GO:0004812|GO:0005524|GO:0005737 Reactome: R-HSA-379726 Amico_0539 c8fef955745d8450f0a66a197c285280 602 PRINTS PR01042 Aspartyl-tRNA synthetase signature 486 502 1.4E-23 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0539 c8fef955745d8450f0a66a197c285280 602 PRINTS PR01042 Aspartyl-tRNA synthetase signature 205 217 1.4E-23 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0539 c8fef955745d8450f0a66a197c285280 602 PRINTS PR01042 Aspartyl-tRNA synthetase signature 222 235 1.4E-23 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0539 c8fef955745d8450f0a66a197c285280 602 PRINTS PR01042 Aspartyl-tRNA synthetase signature 530 544 1.4E-23 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0539 c8fef955745d8450f0a66a197c285280 602 Pfam PF00152 tRNA synthetases class II (D, K and N) 132 570 9.7E-107 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0539 c8fef955745d8450f0a66a197c285280 602 Pfam PF01336 OB-fold nucleic acid binding domain 29 113 1.9E-14 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Amico_0539 c8fef955745d8450f0a66a197c285280 602 Hamap MF_00044 Aspartate--tRNA(Asp/Asn) ligase [aspS]. 12 596 33.448 T 14-10-2018 IPR004524 Aspartate-tRNA ligase, type 1 GO:0005524|GO:0016874 Reactome: R-HSA-379726 Amico_0539 c8fef955745d8450f0a66a197c285280 602 SUPERFAMILY SSF50249 13 117 1.29E-29 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0539 c8fef955745d8450f0a66a197c285280 602 SUPERFAMILY SSF55681 129 595 1.93E-109 T 14-10-2018 Amico_0539 c8fef955745d8450f0a66a197c285280 602 Gene3D G3DSA:3.30.930.10 131 593 2.3E-191 T 14-10-2018 Amico_0600 36f8b4a9928702dfe6aa14dd7c09bd47 224 SUPERFAMILY SSF47781 19 89 2.85E-7 T 14-10-2018 IPR010994 RuvA domain 2-like Amico_0600 36f8b4a9928702dfe6aa14dd7c09bd47 224 SUPERFAMILY SSF102712 156 198 5.36E-5 T 14-10-2018 Amico_0600 36f8b4a9928702dfe6aa14dd7c09bd47 224 Pfam PF04002 RadC-like JAB domain 105 214 6.1E-27 T 14-10-2018 IPR025657 RadC-like JAB domain Amico_0600 36f8b4a9928702dfe6aa14dd7c09bd47 224 Gene3D G3DSA:3.40.140.10 100 218 2.3E-25 T 14-10-2018 Amico_0600 36f8b4a9928702dfe6aa14dd7c09bd47 224 Gene3D G3DSA:1.10.150.20 47 86 5.5E-6 T 14-10-2018 Amico_0600 36f8b4a9928702dfe6aa14dd7c09bd47 224 TIGRFAM TIGR00608 radc: DNA repair protein RadC 11 216 2.1E-49 T 14-10-2018 IPR001405 Uncharacterised protein family UPF0758 Amico_0581 2bcfdb11968162b3207e3296838ce683 96 Gene3D G3DSA:2.30.33.40 1 96 5.8E-39 T 14-10-2018 IPR037124 GroES chaperonin superfamily GO:0005737|GO:0006457 Amico_0581 2bcfdb11968162b3207e3296838ce683 96 SUPERFAMILY SSF50129 1 95 5.3E-36 T 14-10-2018 IPR011032 GroES-like superfamily Amico_0581 2bcfdb11968162b3207e3296838ce683 96 SMART SM00883 2 94 1.0E-56 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Amico_0581 2bcfdb11968162b3207e3296838ce683 96 Pfam PF00166 Chaperonin 10 Kd subunit 2 94 1.4E-36 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Amico_0581 2bcfdb11968162b3207e3296838ce683 96 PRINTS PR00297 10kDa chaperonin signature 60 72 2.5E-32 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Amico_0581 2bcfdb11968162b3207e3296838ce683 96 PRINTS PR00297 10kDa chaperonin signature 81 94 2.5E-32 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Amico_0581 2bcfdb11968162b3207e3296838ce683 96 PRINTS PR00297 10kDa chaperonin signature 25 46 2.5E-32 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Amico_0581 2bcfdb11968162b3207e3296838ce683 96 PRINTS PR00297 10kDa chaperonin signature 3 18 2.5E-32 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Amico_0581 2bcfdb11968162b3207e3296838ce683 96 ProSitePatterns PS00681 Chaperonins cpn10 signature. 3 27 - T 14-10-2018 IPR018369 Chaperonin GroES, conserved site GO:0005524|GO:0006457 Amico_0581 2bcfdb11968162b3207e3296838ce683 96 Hamap MF_00580 10 kDa chaperonin [groS]. 2 95 28.188 T 14-10-2018 IPR020818 GroES chaperonin family GO:0005737|GO:0006457 Amico_1109 b263c781997ef28e1b4cb24b81486d0b 337 SUPERFAMILY SSF69279 7 187 6.23E-17 T 14-10-2018 Amico_1109 b263c781997ef28e1b4cb24b81486d0b 337 Gene3D G3DSA:3.55.50.10 109 194 3.1E-5 T 14-10-2018 Amico_1109 b263c781997ef28e1b4cb24b81486d0b 337 Pfam PF05954 Phage late control gene D protein (GPD) 115 322 5.4E-13 T 14-10-2018 Amico_1184 b201d097ae27b0dc3e47c7dd59f8048f 321 SUPERFAMILY SSF51735 102 289 5.92E-62 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1184 b201d097ae27b0dc3e47c7dd59f8048f 321 Gene3D G3DSA:3.40.50.720 5 315 1.1E-124 T 14-10-2018 Amico_1184 b201d097ae27b0dc3e47c7dd59f8048f 321 Gene3D G3DSA:3.40.50.720 99 288 1.1E-124 T 14-10-2018 Amico_1184 b201d097ae27b0dc3e47c7dd59f8048f 321 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 111 288 2.6E-64 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Amico_1184 b201d097ae27b0dc3e47c7dd59f8048f 321 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 7 320 7.4E-32 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Amico_1184 b201d097ae27b0dc3e47c7dd59f8048f 321 SUPERFAMILY SSF52283 4 137 9.64E-34 T 14-10-2018 Amico_1184 b201d097ae27b0dc3e47c7dd59f8048f 321 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 227 243 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Amico_1184 b201d097ae27b0dc3e47c7dd59f8048f 321 ProSitePatterns PS00065 D-isomer specific 2-hydroxyacid dehydrogenases NAD-binding signature. 150 177 - T 14-10-2018 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 Amico_0366 3395f44c3d83196b2584c404994a3fb4 655 Gene3D G3DSA:1.25.40.10 40 174 4.7E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Amico_0366 3395f44c3d83196b2584c404994a3fb4 655 Gene3D G3DSA:1.10.530.10 507 655 4.1E-44 T 14-10-2018 Amico_0366 3395f44c3d83196b2584c404994a3fb4 655 Gene3D G3DSA:1.25.40.10 212 503 8.4E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Amico_0366 3395f44c3d83196b2584c404994a3fb4 655 SUPERFAMILY SSF48452 214 411 2.05E-8 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Amico_0366 3395f44c3d83196b2584c404994a3fb4 655 Pfam PF01464 Transglycosylase SLT domain 518 627 1.2E-26 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 Amico_0366 3395f44c3d83196b2584c404994a3fb4 655 ProSitePatterns PS00922 Prokaryotic transglycosylases signature. 533 561 - T 14-10-2018 IPR000189 Prokaryotic transglycosylase, active site GO:0000270|GO:0008933|GO:0016020 Amico_0366 3395f44c3d83196b2584c404994a3fb4 655 SUPERFAMILY SSF53955 511 654 2.25E-40 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Amico_0366 3395f44c3d83196b2584c404994a3fb4 655 SUPERFAMILY SSF48452 111 267 6.45E-5 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Amico_0185 5a8873689e771597e7c999223eacc13e 433 TIGRFAM TIGR00238 TIGR00238: KamA family protein 18 339 1.7E-113 T 14-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Amico_0185 5a8873689e771597e7c999223eacc13e 433 Gene3D G3DSA:3.20.20.70 60 345 2.5E-119 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0185 5a8873689e771597e7c999223eacc13e 433 Pfam PF12544 Lysine-2,3-aminomutase 318 430 1.4E-40 T 14-10-2018 IPR025895 Lysine-2,3-aminomutase, C-terminal domain Amico_0185 5a8873689e771597e7c999223eacc13e 433 Gene3D G3DSA:2.40.50.600 346 410 5.9E-19 T 14-10-2018 Amico_0185 5a8873689e771597e7c999223eacc13e 433 Pfam PF04055 Radical SAM superfamily 127 273 1.1E-7 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_0185 5a8873689e771597e7c999223eacc13e 433 PIRSF PIRSF004911 6 396 2.5E-163 T 14-10-2018 IPR003739 Lysine-2,3-aminomutase/glutamate 2,3-aminomutase Amico_0185 5a8873689e771597e7c999223eacc13e 433 TIGRFAM TIGR03820 lys_2_3_AblA: lysine-2,3-aminomutase 19 422 5.1E-180 T 14-10-2018 IPR022459 Lysine-2,3-aminomutase KEGG: 00310+5.4.3.2 Amico_0185 5a8873689e771597e7c999223eacc13e 433 Pfam PF13394 4Fe-4S single cluster domain 128 204 2.6E-5 T 14-10-2018 Amico_0185 5a8873689e771597e7c999223eacc13e 433 SUPERFAMILY SSF102114 111 358 1.1E-34 T 14-10-2018 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 PRINTS PR00980 Alanyl-tRNA synthetase signature 224 237 1.2E-31 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 PRINTS PR00980 Alanyl-tRNA synthetase signature 72 83 1.2E-31 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 PRINTS PR00980 Alanyl-tRNA synthetase signature 274 290 1.2E-31 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 PRINTS PR00980 Alanyl-tRNA synthetase signature 197 208 1.2E-31 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 PRINTS PR00980 Alanyl-tRNA synthetase signature 298 311 1.2E-31 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 SUPERFAMILY SSF55681 6 242 1.49E-97 T 14-10-2018 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 Pfam PF01411 tRNA synthetases class II (A) 8 557 6.3E-200 T 14-10-2018 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal GO:0000166|GO:0004813|GO:0005524|GO:0006419 KEGG: 00970+6.1.1.7 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 SUPERFAMILY SSF101353 244 444 3.66E-63 T 14-10-2018 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily GO:0000166|GO:0004813|GO:0005524|GO:0005737|GO:0006419 KEGG: 00970+6.1.1.7 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 TIGRFAM TIGR00344 alaS: alanine--tRNA ligase 8 858 1.1E-287 T 14-10-2018 IPR002318 Alanine-tRNA ligase, class IIc GO:0000166|GO:0005737 KEGG: 00970+6.1.1.7 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 Gene3D G3DSA:3.30.980.10 564 699 1.7E-49 T 14-10-2018 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 SMART SM00863 655 698 6.8E-20 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 Gene3D G3DSA:2.40.30.130 453 554 2.9E-6 T 14-10-2018 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 655 697 7.7E-18 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 Pfam PF02272 DHHA1 domain 734 873 1.9E-17 T 14-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 Gene3D G3DSA:3.30.54.20 626 679 1.7E-49 T 14-10-2018 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 SUPERFAMILY SSF50447 456 554 6.71E-11 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 Gene3D G3DSA:3.30.930.10 4 240 6.8E-104 T 14-10-2018 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 Hamap MF_00036_B Alanine--tRNA ligase [alaS]. 1 879 165.444 T 14-10-2018 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria GO:0004813 KEGG: 00970+6.1.1.7 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 Gene3D G3DSA:3.10.310.40 764 876 3.3E-27 T 14-10-2018 Amico_1029 fb9da4a3bc5638654c9ffa32123b098b 881 SUPERFAMILY SSF55186 554 709 6.28E-50 T 14-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 Amico_1236 70f70879a049396d8e894f86f2e328fc 63 Gene3D G3DSA:3.30.429.10 1 62 8.7E-22 T 14-10-2018 IPR014347 Tautomerase/MIF superfamily Amico_1236 70f70879a049396d8e894f86f2e328fc 63 TIGRFAM TIGR00013 taut: 4-oxalocrotonate tautomerase family enzyme 1 61 5.1E-19 T 14-10-2018 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type GO:0006725|GO:0016853 Amico_1236 70f70879a049396d8e894f86f2e328fc 63 SUPERFAMILY SSF55331 2 60 1.02E-17 T 14-10-2018 IPR014347 Tautomerase/MIF superfamily Amico_1236 70f70879a049396d8e894f86f2e328fc 63 Pfam PF01361 Tautomerase enzyme 2 59 1.5E-14 T 14-10-2018 IPR004370 4-oxalocrotonate tautomerase GO:0006725|GO:0016853 Amico_0120 c6211deb8fbae0794fef5f923fa5cf24 858 PRINTS PR01183 Ribonucleotide reductase large chain signature 371 394 3.9E-9 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Amico_0120 c6211deb8fbae0794fef5f923fa5cf24 858 PRINTS PR01183 Ribonucleotide reductase large chain signature 409 431 3.9E-9 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Amico_0120 c6211deb8fbae0794fef5f923fa5cf24 858 PRINTS PR01183 Ribonucleotide reductase large chain signature 228 247 3.9E-9 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Amico_0120 c6211deb8fbae0794fef5f923fa5cf24 858 Gene3D G3DSA:3.20.70.20 13 701 3.5E-184 T 14-10-2018 Amico_0120 c6211deb8fbae0794fef5f923fa5cf24 858 TIGRFAM TIGR02504 NrdJ_Z: ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent 39 695 1.5E-152 T 14-10-2018 IPR013344 Ribonucleotide reductase, adenosylcobalamin-dependent GO:0000166|GO:0004748|GO:0031419|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227 Amico_0120 c6211deb8fbae0794fef5f923fa5cf24 858 SUPERFAMILY SSF51998 151 695 4.43E-117 T 14-10-2018 Amico_0120 c6211deb8fbae0794fef5f923fa5cf24 858 Pfam PF02867 Ribonucleotide reductase, barrel domain 153 685 1.5E-118 T 14-10-2018 IPR000788 Ribonucleotide reductase large subunit, C-terminal GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Amico_0120 c6211deb8fbae0794fef5f923fa5cf24 858 Pfam PF00317 Ribonucleotide reductase, all-alpha domain 26 114 4.0E-7 T 14-10-2018 IPR013509 Ribonucleotide reductase large subunit, N-terminal GO:0004748|GO:0005524|GO:0006260|GO:0055114 KEGG: 00230+1.17.4.1|KEGG: 00240+1.17.4.1|KEGG: 00480+1.17.4.1|KEGG: 00983+1.17.4.1|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7198|MetaCyc: PWY-7210|MetaCyc: PWY-7220|MetaCyc: PWY-7222|MetaCyc: PWY-7226|MetaCyc: PWY-7227|Reactome: R-HSA-499943 Amico_0883 6b3d0c6f787605e8fb4fab5e463c7d22 373 PIRSF PIRSF015658 1 373 5.9E-165 T 14-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Amico_0883 6b3d0c6f787605e8fb4fab5e463c7d22 373 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 24 371 1.7E-156 T 14-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Amico_0883 6b3d0c6f787605e8fb4fab5e463c7d22 373 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 23 367 1.0E-149 T 14-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Amico_0270 6b3d0c6f787605e8fb4fab5e463c7d22 373 PIRSF PIRSF015658 1 373 5.9E-165 T 14-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Amico_0270 6b3d0c6f787605e8fb4fab5e463c7d22 373 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 24 371 1.7E-156 T 14-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Amico_0270 6b3d0c6f787605e8fb4fab5e463c7d22 373 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 23 367 1.0E-149 T 14-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 SUPERFAMILY SSF82051 2 158 1.96E-54 T 14-10-2018 IPR036726 GTP1/OBG domain superfamily Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 Gene3D G3DSA:3.40.50.300 159 338 6.6E-49 T 14-10-2018 Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 TIGRFAM TIGR02729 Obg_CgtA: Obg family GTPase CgtA 3 327 9.4E-133 T 14-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 TIGRFAM TIGR03595 Obg_CgtA_exten: Obg family GTPase CgtA, C-terminal extension 365 431 6.4E-17 T 14-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 SUPERFAMILY SSF102741 365 433 4.71E-16 T 14-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 Gene3D G3DSA:2.70.210.12 1 158 2.1E-61 T 14-10-2018 IPR036726 GTP1/OBG domain superfamily Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 Pfam PF09269 Domain of unknown function (DUF1967) 368 431 2.8E-19 T 14-10-2018 IPR015349 GTP-binding protein OBG, C-terminal GO:0000166 Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 Pfam PF01926 50S ribosome-binding GTPase 161 283 1.6E-23 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 Hamap MF_01454 GTPase Obg [obg]. 2 330 46.557 T 14-10-2018 IPR014100 GTP-binding protein Obg/CgtA GO:0000287|GO:0003924|GO:0005525 Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 227 245 8.0E-33 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 210 225 8.0E-33 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 162 182 8.0E-33 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 183 201 8.0E-33 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 Pfam PF01018 GTP1/OBG 4 158 4.8E-60 T 14-10-2018 IPR006169 GTP1/OBG domain Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 SUPERFAMILY SSF52540 161 339 1.18E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0843 84e2a8301b9e9b8396b618aaef6233c1 438 Gene3D G3DSA:2.40.240.60 362 434 9.5E-19 T 14-10-2018 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily Amico_0593 4803dfb33ced7fa9b904400ddf50e860 292 Hamap MF_01464_B Protein-export membrane protein SecF [secF]. 8 287 28.953 T 14-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Amico_0593 4803dfb33ced7fa9b904400ddf50e860 292 TIGRFAM TIGR00966 3a0501s07: protein-export membrane protein SecF 36 276 2.0E-79 T 14-10-2018 IPR005665 Protein-export membrane protein SecF, bacterial GO:0006886|GO:0015450 Amico_0593 4803dfb33ced7fa9b904400ddf50e860 292 SUPERFAMILY SSF82866 95 285 5.23E-37 T 14-10-2018 Amico_0593 4803dfb33ced7fa9b904400ddf50e860 292 Gene3D G3DSA:1.20.1640.10 109 291 5.5E-8 T 14-10-2018 Amico_0593 4803dfb33ced7fa9b904400ddf50e860 292 Pfam PF02355 Protein export membrane protein 101 284 1.3E-67 T 14-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Amico_0593 4803dfb33ced7fa9b904400ddf50e860 292 PRINTS PR01755 Bacterial translocase SecF protein signature 192 210 2.3E-31 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Amico_0593 4803dfb33ced7fa9b904400ddf50e860 292 PRINTS PR01755 Bacterial translocase SecF protein signature 224 239 2.3E-31 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Amico_0593 4803dfb33ced7fa9b904400ddf50e860 292 PRINTS PR01755 Bacterial translocase SecF protein signature 144 158 2.3E-31 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Amico_0593 4803dfb33ced7fa9b904400ddf50e860 292 PRINTS PR01755 Bacterial translocase SecF protein signature 35 50 2.3E-31 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Amico_0593 4803dfb33ced7fa9b904400ddf50e860 292 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 97 273 1.8E-54 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Amico_0593 4803dfb33ced7fa9b904400ddf50e860 292 Pfam PF07549 SecD/SecF GG Motif 30 57 1.1E-10 T 14-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 ProSitePatterns PS00631 Cytosol aminopeptidase signature. 325 332 - T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 SUPERFAMILY SSF53187 159 476 1.13E-101 T 14-10-2018 Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 PRINTS PR00481 Cytosol aminopeptidase signature 299 320 4.4E-45 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 PRINTS PR00481 Cytosol aminopeptidase signature 349 364 4.4E-45 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 PRINTS PR00481 Cytosol aminopeptidase signature 262 283 4.4E-45 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 PRINTS PR00481 Cytosol aminopeptidase signature 240 257 4.4E-45 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 PRINTS PR00481 Cytosol aminopeptidase signature 321 341 4.4E-45 T 14-10-2018 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B GO:0004177|GO:0005737|GO:0008235|GO:0019538|GO:0030145 KEGG: 00480+3.4.11.1 Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 Pfam PF02789 Cytosol aminopeptidase family, N-terminal domain 53 131 2.0E-10 T 14-10-2018 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 Gene3D G3DSA:3.40.220.10 43 141 5.8E-12 T 14-10-2018 Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 Pfam PF00883 Cytosol aminopeptidase family, catalytic domain 164 469 1.8E-105 T 14-10-2018 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal GO:0004177|GO:0005622|GO:0006508 KEGG: 00480+3.4.11.1 Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 Gene3D G3DSA:3.40.630.10 146 478 1.9E-117 T 14-10-2018 Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 Hamap MF_00181 Probable cytosol aminopeptidase [pepA]. 2 479 30.39 T 14-10-2018 IPR023042 Peptidase M17, leucine aminopeptidase KEGG: 00480+3.4.11.1 Amico_1649 76d4336969fc326232e556f2ac7fdc3e 480 SUPERFAMILY SSF52949 36 161 1.47E-10 T 14-10-2018 Amico_1533 5305070c8f93cc90a0dc115482623ce6 140 SMART SM00881 11 106 4.2E-10 T 14-10-2018 IPR003781 CoA-binding GO:0048037 Amico_1533 5305070c8f93cc90a0dc115482623ce6 140 Pfam PF13380 CoA binding domain 16 132 4.2E-27 T 14-10-2018 IPR003781 CoA-binding GO:0048037 Amico_1533 5305070c8f93cc90a0dc115482623ce6 140 Gene3D G3DSA:3.40.50.720 4 138 1.1E-34 T 14-10-2018 Amico_1533 5305070c8f93cc90a0dc115482623ce6 140 SUPERFAMILY SSF51735 10 133 7.88E-31 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1651 41a266f01940f5f4d0c9a17ed79291ab 277 PIRSF PIRSF015853 1 276 4.8E-76 T 14-10-2018 IPR007035 Peptidase M55, D-aminopeptidase Amico_1651 41a266f01940f5f4d0c9a17ed79291ab 277 SUPERFAMILY SSF63992 2 276 2.35E-69 T 14-10-2018 IPR036177 Peptidase M55, D-aminopeptidase superfamily Amico_1651 41a266f01940f5f4d0c9a17ed79291ab 277 Pfam PF04951 D-aminopeptidase 1 266 1.3E-89 T 14-10-2018 IPR007035 Peptidase M55, D-aminopeptidase Amico_1651 41a266f01940f5f4d0c9a17ed79291ab 277 Gene3D G3DSA:3.30.1360.130 119 263 2.3E-80 T 14-10-2018 Amico_1651 41a266f01940f5f4d0c9a17ed79291ab 277 Gene3D G3DSA:3.40.50.10780 1 218 2.3E-80 T 14-10-2018 IPR027476 D-aminopeptidase, N-terminal Amico_1247 a96f2b33d06a0648bc26cab6d3c18612 96 SUPERFAMILY SSF50037 10 80 4.81E-19 T 14-10-2018 IPR008988 Transcriptional repressor, C-terminal Amico_1247 a96f2b33d06a0648bc26cab6d3c18612 96 Gene3D G3DSA:2.30.30.90 5 82 4.0E-22 T 14-10-2018 IPR038157 Ferrous iron transporter, core domain Amico_1247 a96f2b33d06a0648bc26cab6d3c18612 96 Pfam PF04023 FeoA domain 8 78 2.2E-16 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Amico_1247 a96f2b33d06a0648bc26cab6d3c18612 96 SMART SM00899 7 79 1.7E-17 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Amico_1032 6077a34665bf2f6221e7714fa6e93873 334 Pfam PF01008 Initiation factor 2 subunit family 47 325 1.5E-79 T 14-10-2018 IPR000649 Initiation factor 2B-related GO:0044237 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174 Amico_1032 6077a34665bf2f6221e7714fa6e93873 334 Gene3D G3DSA:3.40.50.10470 142 334 1.2E-68 T 14-10-2018 Amico_1032 6077a34665bf2f6221e7714fa6e93873 334 SUPERFAMILY SSF100950 8 331 3.43E-116 T 14-10-2018 IPR037171 NagB/RpiA transferase-like Amico_1032 6077a34665bf2f6221e7714fa6e93873 334 Hamap MF_01678 Putative methylthioribose-1-phosphate isomerase [mtnA]. 2 332 39.499 T 14-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Amico_1032 6077a34665bf2f6221e7714fa6e93873 334 Gene3D G3DSA:1.20.120.420 5 136 2.1E-41 T 14-10-2018 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Amico_1032 6077a34665bf2f6221e7714fa6e93873 334 TIGRFAM TIGR00524 eIF-2B_rel: eIF-2B alpha/beta/delta-related uncharacterized proteins 32 325 8.4E-115 T 14-10-2018 IPR011559 Initiation factor 2B alpha/beta/delta GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Amico_1032 6077a34665bf2f6221e7714fa6e93873 334 TIGRFAM TIGR00512 salvage_mtnA: S-methyl-5-thioribose-1-phosphate isomerase 8 324 2.7E-129 T 14-10-2018 IPR005251 Methylthioribose-1-phosphate isomerase GO:0044249 KEGG: 00270+5.3.1.23|MetaCyc: PWY-4361|MetaCyc: PWY-7174|Reactome: R-HSA-1237112 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 Gene3D G3DSA:1.10.10.10 217 292 1.2E-33 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 Gene3D G3DSA:1.10.220.120 19 77 1.1E-11 T 14-10-2018 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 TIGRFAM TIGR02937 sigma70-ECF: RNA polymerase sigma factor, sigma-70 family 140 365 3.1E-40 T 14-10-2018 IPR014284 RNA polymerase sigma-70 like domain GO:0003700|GO:0006352|GO:0006355 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 Gene3D G3DSA:1.10.10.10 293 377 6.4E-36 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 Gene3D G3DSA:1.10.601.10 138 216 1.3E-50 T 14-10-2018 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 Gene3D G3DSA:1.10.601.10 104 137 1.7E-11 T 14-10-2018 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 Pfam PF04539 Sigma-70 region 3 223 299 2.3E-28 T 14-10-2018 IPR007624 RNA polymerase sigma-70 region 3 GO:0003700|GO:0006352|GO:0006355 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 ProSitePatterns PS00716 Sigma-70 factors family signature 2. 337 363 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 ProSitePatterns PS00715 Sigma-70 factors family signature 1. 168 181 - T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 Hamap MF_00963 RNA polymerase sigma factor RpoD [rpoD]. 19 377 33.139 T 14-10-2018 IPR028630 RNA polymerase sigma factor RpoD GO:0006352|GO:0016987 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 Pfam PF00140 Sigma-70 factor, region 1.2 106 139 6.9E-17 T 14-10-2018 IPR009042 RNA polymerase sigma-70 region 1.2 GO:0003677|GO:0003700|GO:0006352|GO:0006355|GO:0016987 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 SUPERFAMILY SSF88659 217 290 1.0E-21 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 PRINTS PR00046 Major sigma-70 factor signature 192 200 8.1E-32 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 PRINTS PR00046 Major sigma-70 factor signature 168 181 8.1E-32 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 PRINTS PR00046 Major sigma-70 factor signature 337 352 8.1E-32 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 PRINTS PR00046 Major sigma-70 factor signature 316 328 8.1E-32 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 PRINTS PR00046 Major sigma-70 factor signature 352 363 8.1E-32 T 14-10-2018 IPR000943 RNA polymerase sigma-70 GO:0003700|GO:0006352|GO:0006355 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 Pfam PF04542 Sigma-70 region 2 145 213 3.0E-21 T 14-10-2018 IPR007627 RNA polymerase sigma-70 region 2 GO:0003700|GO:0006352|GO:0006355 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 Pfam PF03979 Sigma-70 factor, region 1.1 23 93 1.1E-13 T 14-10-2018 IPR007127 RNA polymerase sigma factor 70, region 1.1 GO:0003677|GO:0006355 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 SUPERFAMILY SSF88659 274 376 5.61E-31 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 SUPERFAMILY SSF88946 105 214 1.03E-52 T 14-10-2018 IPR013325 RNA polymerase sigma factor, region 2 GO:0003700|GO:0006352|GO:0006355 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 TIGRFAM TIGR02393 RpoD_Cterm: RNA polymerase sigma factor RpoD 140 376 2.0E-122 T 14-10-2018 IPR012760 RNA polymerase sigma factor RpoD, C-terminal GO:0003677|GO:0006352|GO:0006355|GO:0016987 Amico_1627 57e671bfd3477a4b4dca6bdce4b90ff4 377 Pfam PF04545 Sigma-70, region 4 313 365 3.3E-20 T 14-10-2018 IPR007630 RNA polymerase sigma-70 region 4 GO:0003700|GO:0006352|GO:0006355 Amico_1457 609044580789d5236b5f521c74bcbdf7 404 Pfam PF01551 Peptidase family M23 304 399 5.9E-35 T 14-10-2018 IPR016047 Peptidase M23 Amico_1457 609044580789d5236b5f521c74bcbdf7 404 Gene3D G3DSA:2.70.70.10 247 404 1.3E-52 T 14-10-2018 IPR011055 Duplicated hybrid motif Amico_1457 609044580789d5236b5f521c74bcbdf7 404 SUPERFAMILY SSF51261 222 403 2.04E-59 T 14-10-2018 IPR011055 Duplicated hybrid motif Amico_0748 735379875b52301e59e015d7346b5c50 196 SUPERFAMILY SSF53178 2 187 4.05E-57 T 14-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 Amico_0748 735379875b52301e59e015d7346b5c50 196 TIGRFAM TIGR00447 pth: aminoacyl-tRNA hydrolase 2 186 1.3E-53 T 14-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Amico_0748 735379875b52301e59e015d7346b5c50 196 Gene3D G3DSA:3.40.50.1470 1 191 1.1E-58 T 14-10-2018 IPR036416 Peptidyl-tRNA hydrolase superfamily GO:0004045 MetaCyc: PWY-6308 Amico_0748 735379875b52301e59e015d7346b5c50 196 Pfam PF01195 Peptidyl-tRNA hydrolase 3 186 7.6E-53 T 14-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Amico_0748 735379875b52301e59e015d7346b5c50 196 ProSitePatterns PS01195 Peptidyl-tRNA hydrolase signature 1. 14 27 - T 14-10-2018 IPR018171 Peptidyl-tRNA hydrolase, conserved site GO:0004045 MetaCyc: PWY-6308 Amico_0748 735379875b52301e59e015d7346b5c50 196 Hamap MF_00083 Peptidyl-tRNA hydrolase [pth]. 1 179 31.824 T 14-10-2018 IPR001328 Peptidyl-tRNA hydrolase GO:0004045 MetaCyc: PWY-6308 Amico_1661 6e11ab62cb8dd71803e32d4827b447b2 307 SUPERFAMILY SSF161098 90 288 9.81E-25 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1661 6e11ab62cb8dd71803e32d4827b447b2 307 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 114 305 3.6E-39 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_1661 6e11ab62cb8dd71803e32d4827b447b2 307 Gene3D G3DSA:1.10.3720.10 87 300 5.4E-26 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1517 499309c6f87afea003a44b7ef5a83921 468 TIGRFAM TIGR00390 hslU: ATP-dependent protease HslVU, ATPase subunit 11 468 2.0E-187 T 14-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Amico_1517 499309c6f87afea003a44b7ef5a83921 468 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 360 430 1.3E-5 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Amico_1517 499309c6f87afea003a44b7ef5a83921 468 Hamap MF_00249 ATP-dependent protease ATPase subunit HslU [hslU]. 8 468 41.481 T 14-10-2018 IPR004491 Heat shock protein HslU GO:0005524|GO:0005737|GO:0009376|GO:0016887|GO:0070011 Amico_1517 499309c6f87afea003a44b7ef5a83921 468 SMART SM00382 56 357 4.3E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1517 499309c6f87afea003a44b7ef5a83921 468 Gene3D G3DSA:1.10.8.60 360 465 1.3E-36 T 14-10-2018 Amico_1517 499309c6f87afea003a44b7ef5a83921 468 SUPERFAMILY SSF52540 11 461 1.03E-81 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1517 499309c6f87afea003a44b7ef5a83921 468 Pfam PF07724 AAA domain (Cdc48 subfamily) 198 354 5.5E-41 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_1517 499309c6f87afea003a44b7ef5a83921 468 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 60 168 1.6E-6 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_1517 499309c6f87afea003a44b7ef5a83921 468 SMART SM01086 360 456 1.3E-18 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Amico_0958 9893f189d7dddc3b4b4072ac693a87c7 114 Pfam PF12986 Domain of unknown function (DUF3870) 13 106 7.1E-32 T 14-10-2018 IPR024617 Domain of unknown function DUF3870 Amico_1625 d7d910744061a3bdcd52952c9714a67d 723 Gene3D G3DSA:3.30.450.20 299 414 4.4E-19 T 14-10-2018 Amico_1625 d7d910744061a3bdcd52952c9714a67d 723 SMART SM00091 607 682 6.5 T 14-10-2018 IPR000014 PAS domain Amico_1625 d7d910744061a3bdcd52952c9714a67d 723 SMART SM00091 302 370 2.6E-7 T 14-10-2018 IPR000014 PAS domain Amico_1625 d7d910744061a3bdcd52952c9714a67d 723 Pfam PF13188 PAS domain 607 672 0.022 T 14-10-2018 IPR000014 PAS domain Amico_1625 d7d910744061a3bdcd52952c9714a67d 723 Pfam PF00989 PAS fold 303 409 1.2E-11 T 14-10-2018 IPR013767 PAS fold GO:0006355 Amico_1625 d7d910744061a3bdcd52952c9714a67d 723 Pfam PF01590 GAF domain 446 589 2.5E-5 T 14-10-2018 IPR003018 GAF domain GO:0005515 Amico_1625 d7d910744061a3bdcd52952c9714a67d 723 SUPERFAMILY SSF55785 288 414 2.09E-19 T 14-10-2018 IPR035965 PAS domain superfamily Amico_1625 d7d910744061a3bdcd52952c9714a67d 723 Gene3D G3DSA:3.30.450.20 605 718 1.2E-7 T 14-10-2018 Amico_1625 d7d910744061a3bdcd52952c9714a67d 723 SUPERFAMILY SSF55785 594 693 3.84E-7 T 14-10-2018 IPR035965 PAS domain superfamily Amico_1625 d7d910744061a3bdcd52952c9714a67d 723 SUPERFAMILY SSF55781 431 614 3.19E-7 T 14-10-2018 Amico_1625 d7d910744061a3bdcd52952c9714a67d 723 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 303 420 2.6E-17 T 14-10-2018 IPR000014 PAS domain Amico_1625 d7d910744061a3bdcd52952c9714a67d 723 Gene3D G3DSA:3.30.450.40 415 604 9.3E-10 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 SUPERFAMILY SSF51905 30 363 5.18E-66 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 164 182 3.9E-37 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 290 306 3.9E-37 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 318 340 3.9E-37 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 35 54 3.9E-37 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 203 221 3.9E-37 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PIRSF PIRSF000350 24 488 2.1E-100 T 14-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 Gene3D G3DSA:3.50.50.60 183 304 9.2E-117 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 67 77 - T 14-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 Gene3D G3DSA:3.30.390.30 371 491 1.9E-44 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 33 353 4.0E-70 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 TIGRFAM TIGR01350 lipoamide_DH: dihydrolipoyl dehydrogenase 34 490 2.0E-170 T 14-10-2018 IPR006258 Dihydrolipoamide dehydrogenase GO:0004148|GO:0050660|GO:0055114 KEGG: 00010+1.8.1.4|KEGG: 00020+1.8.1.4|KEGG: 00260+1.8.1.4|KEGG: 00280+1.8.1.4|KEGG: 00620+1.8.1.4|KEGG: 00640+1.8.1.4|MetaCyc: PWY-5046|MetaCyc: PWY-5084|Reactome: R-HSA-204174|Reactome: R-HSA-389661|Reactome: R-HSA-5362517|Reactome: R-HSA-6783984|Reactome: R-HSA-70268|Reactome: R-HSA-70895|Reactome: R-HSA-71064|Reactome: R-HSA-71403 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 372 479 5.0E-34 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 Gene3D G3DSA:3.50.50.60 35 360 9.2E-117 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 SUPERFAMILY SSF55424 368 492 7.73E-41 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 203 228 3.6E-75 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 291 305 3.6E-75 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 433 448 3.6E-75 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 34 56 3.6E-75 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 455 475 3.6E-75 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 66 81 3.6E-75 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 167 176 3.6E-75 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 333 340 3.6E-75 T 14-10-2018 Amico_1584 c15ca90ea3300dbd2e645bedeb1fc72e 495 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 368 389 3.6E-75 T 14-10-2018 Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 Pfam PF02978 Signal peptide binding domain 327 423 1.6E-32 T 14-10-2018 IPR004125 Signal recognition particle, SRP54 subunit, M-domain GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 SMART SM00963 1 86 3.2E-33 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 Pfam PF02881 SRP54-type protein, helical bundle domain 5 82 1.5E-21 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 Pfam PF00448 SRP54-type protein, GTPase domain 101 294 1.2E-67 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 Hamap MF_00306 Signal recognition particle 54 kDa protein [srp54]. 5 441 32.712 T 14-10-2018 IPR022941 Signal recognition particle, SRP54 subunit GO:0003924|GO:0005525|GO:0006614|GO:0048500 Reactome: R-HSA-1799339 Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 Gene3D G3DSA:1.20.120.140 5 305 1.2E-115 T 14-10-2018 Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 TIGRFAM TIGR00959 ffh: signal recognition particle protein 2 426 6.9E-169 T 14-10-2018 IPR004780 Signal recognition particle protein Ffh GO:0003924|GO:0005525|GO:0006614|GO:0048500 Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 Gene3D G3DSA:3.40.50.300 90 284 1.2E-115 T 14-10-2018 Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 Gene3D G3DSA:1.10.260.30 326 442 1.7E-40 T 14-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 SMART SM00382 99 273 1.4E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 268 281 - T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 SUPERFAMILY SSF47446 326 429 1.8E-34 T 14-10-2018 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily GO:0006614|GO:0008312|GO:0048500 Reactome: R-HSA-1799339 Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 SUPERFAMILY SSF52540 42 352 1.27E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0551 6a6a3c4f05bbe32fc7cdd268c6b60837 449 SMART SM00962 100 295 2.7E-99 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Amico_0808 b48fd3d852d9ca80b81c9671abedb06e 473 Hamap MF_00310 V-type ATP synthase beta chain [atpB]. 3 459 59.301 T 14-10-2018 IPR022879 V-type ATP synthase regulatory subunit B/beta Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0808 b48fd3d852d9ca80b81c9671abedb06e 473 SUPERFAMILY SSF52540 79 355 2.13E-85 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0808 b48fd3d852d9ca80b81c9671abedb06e 473 Gene3D G3DSA:3.40.50.12240 2 458 2.8E-183 T 14-10-2018 Amico_0808 b48fd3d852d9ca80b81c9671abedb06e 473 PIRSF PIRSF039114 1 466 8.2E-242 T 14-10-2018 IPR022879 V-type ATP synthase regulatory subunit B/beta Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0808 b48fd3d852d9ca80b81c9671abedb06e 473 SUPERFAMILY SSF47917 362 417 2.17E-5 T 14-10-2018 Amico_0808 b48fd3d852d9ca80b81c9671abedb06e 473 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 9 75 1.2E-10 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0808 b48fd3d852d9ca80b81c9671abedb06e 473 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 341 350 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0808 b48fd3d852d9ca80b81c9671abedb06e 473 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 132 350 5.0E-67 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0051 ccb5a3d57b6acd533cf4d07ddd55a805 140 Gene3D G3DSA:3.10.129.10 3 139 1.4E-31 T 14-10-2018 Amico_0051 ccb5a3d57b6acd533cf4d07ddd55a805 140 SUPERFAMILY SSF54637 10 134 6.9E-29 T 14-10-2018 IPR029069 HotDog domain superfamily Amico_0051 ccb5a3d57b6acd533cf4d07ddd55a805 140 Pfam PF03061 Thioesterase superfamily 52 126 2.2E-11 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Amico_0576 79be9cc78783203394f69aa6cee6907d 242 TIGRFAM TIGR04406 LPS_export_lptB: LPS export ABC transporter ATP-binding protein 5 241 1.3E-102 T 14-10-2018 IPR030921 LPS export ABC transporter, ATP-binding protein LptB GO:0043190|GO:0055085 Amico_0576 79be9cc78783203394f69aa6cee6907d 242 SMART SM00382 30 215 1.5E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0576 79be9cc78783203394f69aa6cee6907d 242 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0576 79be9cc78783203394f69aa6cee6907d 242 Pfam PF00005 ABC transporter 22 166 5.4E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0576 79be9cc78783203394f69aa6cee6907d 242 Gene3D G3DSA:3.40.50.300 4 242 1.9E-64 T 14-10-2018 Amico_0576 79be9cc78783203394f69aa6cee6907d 242 SUPERFAMILY SSF52540 6 235 3.5E-64 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0757 abedb117d0901676b78ae1c7c3e15686 308 TIGRFAM TIGR00436 era: GTP-binding protein Era 12 288 3.3E-83 T 14-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0757 abedb117d0901676b78ae1c7c3e15686 308 Gene3D G3DSA:3.40.50.300 6 189 1.4E-45 T 14-10-2018 Amico_0757 abedb117d0901676b78ae1c7c3e15686 308 Hamap MF_00367 GTPase Era [era]. 8 305 35.181 T 14-10-2018 IPR005662 GTP-binding protein Era GO:0003723|GO:0005525|GO:0005622 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0757 abedb117d0901676b78ae1c7c3e15686 308 Gene3D G3DSA:3.30.300.20 190 307 4.1E-41 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Amico_0757 abedb117d0901676b78ae1c7c3e15686 308 Pfam PF01926 50S ribosome-binding GTPase 14 128 1.3E-24 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0757 abedb117d0901676b78ae1c7c3e15686 308 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 13 174 8.5E-28 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_0757 abedb117d0901676b78ae1c7c3e15686 308 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 80 98 1.1E-5 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0757 abedb117d0901676b78ae1c7c3e15686 308 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 13 33 1.1E-5 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0757 abedb117d0901676b78ae1c7c3e15686 308 SUPERFAMILY SSF54814 186 305 1.57E-37 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Amico_0757 abedb117d0901676b78ae1c7c3e15686 308 SUPERFAMILY SSF52540 14 211 2.37E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0757 abedb117d0901676b78ae1c7c3e15686 308 Pfam PF07650 KH domain 213 294 3.4E-17 T 14-10-2018 IPR004044 K Homology domain, type 2 GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0637 212d255e5aa45f808208d413ba2c7d0a 122 Hamap MF_01367 50S ribosomal protein L14 [rplN]. 1 122 26.717 T 14-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Amico_0637 212d255e5aa45f808208d413ba2c7d0a 122 Pfam PF00238 Ribosomal protein L14p/L23e 1 122 3.5E-55 T 14-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Amico_0637 212d255e5aa45f808208d413ba2c7d0a 122 TIGRFAM TIGR01067 rplN_bact: ribosomal protein uL14 1 122 3.9E-56 T 14-10-2018 IPR005745 Ribosomal protein L14P, bacterial-type GO:0003735|GO:0006412|GO:0015934 Amico_0637 212d255e5aa45f808208d413ba2c7d0a 122 ProSitePatterns PS00049 Ribosomal protein L14 signature. 60 86 - T 14-10-2018 IPR019972 Ribosomal protein L14P, conserved site Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0637 212d255e5aa45f808208d413ba2c7d0a 122 Gene3D G3DSA:2.40.150.20 1 122 5.4E-55 T 14-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 Amico_0637 212d255e5aa45f808208d413ba2c7d0a 122 SUPERFAMILY SSF50193 1 122 2.35E-52 T 14-10-2018 IPR036853 Ribosomal protein L14 superfamily GO:0003735|GO:0005840|GO:0006412 Amico_0637 212d255e5aa45f808208d413ba2c7d0a 122 SMART SM01374 1 122 1.3E-85 T 14-10-2018 IPR000218 Ribosomal protein L14P GO:0003735|GO:0005840|GO:0006412 Amico_0463 94c32accb2db98f40782aa5bca599ea1 704 Pfam PF14067 LssY C-terminus 518 697 4.9E-52 T 14-10-2018 IPR025902 LssY-like C-terminal domain Amico_0463 94c32accb2db98f40782aa5bca599ea1 704 SUPERFAMILY SSF48317 271 453 5.36E-31 T 14-10-2018 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily Amico_0463 94c32accb2db98f40782aa5bca599ea1 704 Gene3D G3DSA:1.20.144.10 361 469 7.6E-22 T 14-10-2018 Amico_0463 94c32accb2db98f40782aa5bca599ea1 704 Pfam PF01569 PAP2 superfamily 336 443 8.4E-18 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Amico_0463 94c32accb2db98f40782aa5bca599ea1 704 Pfam PF09335 SNARE associated Golgi protein 44 158 4.1E-9 T 14-10-2018 IPR032816 SNARE associated Golgi protein Amico_0463 94c32accb2db98f40782aa5bca599ea1 704 SMART SM00014 333 443 6.2E-20 T 14-10-2018 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase Amico_0445 bdc6199c5421d985b9775541860fdb28 88 ProDom PD015389 LYASE CITRATE ACYL CARRIER GAMMA CHAIN CITD PRECURSOR SIGNAL DIRECT 6 79 3.0E-5 T 14-10-2018 IPR006495 Citrate lyase acyl carrier protein CitD GO:0005737 Amico_0445 bdc6199c5421d985b9775541860fdb28 88 Pfam PF06857 Malonate decarboxylase delta subunit (MdcD) 4 83 8.2E-21 T 14-10-2018 IPR023439 Malonate decarboxylase/citrate lyase acyl carrier protein Amico_1439 8618e9b250a59d31037592db237b1b07 288 SUPERFAMILY SSF53335 70 281 1.36E-30 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_1439 8618e9b250a59d31037592db237b1b07 288 Hamap MF_00735 Ribosomal protein L11 methyltransferase [prmA]. 4 287 26.708 T 14-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Amico_1439 8618e9b250a59d31037592db237b1b07 288 Pfam PF06325 Ribosomal protein L11 methyltransferase (PrmA) 36 287 1.6E-53 T 14-10-2018 Amico_1439 8618e9b250a59d31037592db237b1b07 288 Gene3D G3DSA:3.40.50.150 93 288 1.2E-45 T 14-10-2018 Amico_1439 8618e9b250a59d31037592db237b1b07 288 PIRSF PIRSF000401 47 288 8.0E-58 T 14-10-2018 IPR004498 Ribosomal protein L11 methyltransferase GO:0006479|GO:0008276 Amico_1182 036b5aed4d4a4ce7e71b2d34f9c904b0 179 Pfam PF02482 Sigma 54 modulation protein / S30EA ribosomal protein 4 92 1.4E-17 T 14-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 Amico_1182 036b5aed4d4a4ce7e71b2d34f9c904b0 179 Gene3D G3DSA:3.30.505.50 132 177 3.9E-23 T 14-10-2018 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily Amico_1182 036b5aed4d4a4ce7e71b2d34f9c904b0 179 Hamap MF_00839 Ribosome hibernation promoting factor [hpf]. 1 178 21.926 T 14-10-2018 IPR034694 Ribosome hibernation promoting factor, long/plastid Amico_1182 036b5aed4d4a4ce7e71b2d34f9c904b0 179 SUPERFAMILY SSF69754 1 95 1.23E-20 T 14-10-2018 IPR036567 Ribosome hibernation promotion factor-like Amico_1182 036b5aed4d4a4ce7e71b2d34f9c904b0 179 Pfam PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus 120 174 1.1E-27 T 14-10-2018 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal Amico_1182 036b5aed4d4a4ce7e71b2d34f9c904b0 179 TIGRFAM TIGR00741 yfiA: ribosomal subunit interface protein 1 95 6.1E-17 T 14-10-2018 IPR003489 Ribosome hibernation promoting factor/RaiA GO:0044238 Amico_1182 036b5aed4d4a4ce7e71b2d34f9c904b0 179 Gene3D G3DSA:3.30.160.100 1 95 2.6E-20 T 14-10-2018 IPR036567 Ribosome hibernation promotion factor-like Amico_1781 ac34b1b5251f6bea4944db52768d55c9 275 SMART SM00382 37 231 2.5E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1781 ac34b1b5251f6bea4944db52768d55c9 275 SUPERFAMILY SSF52540 8 254 2.08E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1781 ac34b1b5251f6bea4944db52768d55c9 275 ProSitePatterns PS00211 ABC transporters family signature. 155 169 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1781 ac34b1b5251f6bea4944db52768d55c9 275 Pfam PF00005 ABC transporter 28 183 7.1E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1781 ac34b1b5251f6bea4944db52768d55c9 275 Gene3D G3DSA:3.40.50.300 5 273 2.3E-75 T 14-10-2018 Amico_1609 2085b4c51694422f76376508390b7860 339 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 113 293 8.5E-43 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Amico_1609 2085b4c51694422f76376508390b7860 339 Gene3D G3DSA:3.40.50.720 106 300 5.6E-61 T 14-10-2018 Amico_1609 2085b4c51694422f76376508390b7860 339 Gene3D G3DSA:3.40.50.720 43 322 5.6E-61 T 14-10-2018 Amico_1609 2085b4c51694422f76376508390b7860 339 SUPERFAMILY SSF51735 107 294 9.22E-43 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1609 2085b4c51694422f76376508390b7860 339 SUPERFAMILY SSF52283 8 140 7.09E-12 T 14-10-2018 Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 Gene3D G3DSA:3.30.260.10 135 408 8.8E-227 T 14-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 SUPERFAMILY SSF54849 136 202 1.76E-25 T 14-10-2018 IPR027410 TCP-1-like chaperonin intermediate domain superfamily Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 SUPERFAMILY SSF48592 6 520 5.25E-77 T 14-10-2018 IPR027413 GroEL-like equatorial domain superfamily Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 ProSitePatterns PS00296 Chaperonins cpn60 signature. 403 414 - T 14-10-2018 IPR018370 Chaperonin Cpn60, conserved site GO:0005524|GO:0005737|GO:0006457 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 Gene3D G3DSA:1.10.560.10 7 520 8.8E-227 T 14-10-2018 IPR027413 GroEL-like equatorial domain superfamily Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 Pfam PF00118 TCP-1/cpn60 chaperonin family 22 524 6.7E-97 T 14-10-2018 IPR002423 Chaperonin Cpn60/TCP-1 family GO:0005524 Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 Hamap MF_00600 60 kDa chaperonin [groL]. 1 541 40.593 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 PRINTS PR00298 60kDa chaperonin signature 26 52 1.5E-72 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 PRINTS PR00298 60kDa chaperonin signature 266 289 1.5E-72 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 PRINTS PR00298 60kDa chaperonin signature 348 373 1.5E-72 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 PRINTS PR00298 60kDa chaperonin signature 82 109 1.5E-72 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 PRINTS PR00298 60kDa chaperonin signature 396 417 1.5E-72 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 Gene3D G3DSA:3.50.7.10 190 370 8.8E-227 T 14-10-2018 IPR027409 GroEL-like apical domain superfamily Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 SUPERFAMILY SSF52029 183 374 1.79E-82 T 14-10-2018 IPR027409 GroEL-like apical domain superfamily Amico_0582 101ce57b5d0c03721e05b5e9361c7dc3 545 TIGRFAM TIGR02348 GroEL: chaperonin GroL 3 525 1.2E-248 T 14-10-2018 IPR001844 Chaperonin Cpn60 GO:0005737|GO:0042026 Reactome: R-HSA-1268020|Reactome: R-HSA-8869496 Amico_0124 0d67d449da36b600be802434ba3be9a8 226 TIGRFAM TIGR02593 CRISPR_cas5: CRISPR-associated protein Cas5 1 42 7.5E-10 T 14-10-2018 IPR013422 CRISPR-associated protein Cas5, N-terminal Amico_0124 0d67d449da36b600be802434ba3be9a8 226 Pfam PF09704 CRISPR-associated protein (Cas_Cas5) 1 126 3.0E-8 T 14-10-2018 IPR021124 CRISPR-associated protein, Cas5 GO:0043571 Amico_1004 c2d74021e2d4bdd2d217dc9d7c6e3630 414 Pfam PF01546 Peptidase family M20/M25/M40 77 407 4.8E-31 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1004 c2d74021e2d4bdd2d217dc9d7c6e3630 414 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 8 409 7.2E-128 T 14-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 Amico_1004 c2d74021e2d4bdd2d217dc9d7c6e3630 414 PIRSF PIRSF001235 2 413 6.8E-137 T 14-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 Amico_1004 c2d74021e2d4bdd2d217dc9d7c6e3630 414 SUPERFAMILY SSF55031 214 330 2.36E-26 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1004 c2d74021e2d4bdd2d217dc9d7c6e3630 414 Pfam PF07687 Peptidase dimerisation domain 214 309 2.4E-6 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1004 c2d74021e2d4bdd2d217dc9d7c6e3630 414 SUPERFAMILY SSF53187 5 410 1.14E-81 T 14-10-2018 Amico_1004 c2d74021e2d4bdd2d217dc9d7c6e3630 414 Gene3D G3DSA:3.30.70.360 214 328 4.1E-135 T 14-10-2018 Amico_1004 c2d74021e2d4bdd2d217dc9d7c6e3630 414 Gene3D G3DSA:3.40.630.10 21 402 4.1E-135 T 14-10-2018 Amico_0762 53dc774bb4e896443d5a845f71180264 271 Pfam PF03618 Kinase/pyrophosphorylase 10 266 1.1E-92 T 14-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 Amico_0762 53dc774bb4e896443d5a845f71180264 271 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 8 271 56.813 T 14-10-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein Amico_0925 ef732ec93ed3416d9b17d874013229b6 328 Gene3D G3DSA:3.40.190.10 111 263 6.1E-60 T 14-10-2018 Amico_0925 ef732ec93ed3416d9b17d874013229b6 328 SUPERFAMILY SSF53850 25 325 3.38E-35 T 14-10-2018 Amico_0925 ef732ec93ed3416d9b17d874013229b6 328 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 2 325 1.7E-42 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_0925 ef732ec93ed3416d9b17d874013229b6 328 Gene3D G3DSA:3.40.190.10 31 325 6.1E-60 T 14-10-2018 Amico_0925 ef732ec93ed3416d9b17d874013229b6 328 Pfam PF16868 NMT1-like family 32 324 5.9E-46 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_0234 5c13f00202f610bf6d5ec33c3ee6e9a9 497 Gene3D G3DSA:3.20.20.80 1 497 1.3E-174 T 14-10-2018 Amico_0234 5c13f00202f610bf6d5ec33c3ee6e9a9 497 SUPERFAMILY SSF51445 3 496 7.62E-154 T 14-10-2018 IPR017853 Glycoside hydrolase superfamily Amico_0234 5c13f00202f610bf6d5ec33c3ee6e9a9 497 Pfam PF02446 4-alpha-glucanotransferase 9 473 2.0E-144 T 14-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 Amico_0234 5c13f00202f610bf6d5ec33c3ee6e9a9 497 TIGRFAM TIGR00217 malQ: 4-alpha-glucanotransferase 3 496 8.6E-88 T 14-10-2018 IPR003385 Glycoside hydrolase, family 77 GO:0004134|GO:0005975 KEGG: 00500+2.4.1.25|MetaCyc: PWY-5941|MetaCyc: PWY-6724|MetaCyc: PWY-6737|MetaCyc: PWY-7238 Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 ProSitePatterns PS00843 D-alanine--D-alanine ligase signature 1. 77 88 - T 14-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 TIGRFAM TIGR01205 D_ala_D_alaTIGR: D-alanine--D-alanine ligase 17 317 1.1E-83 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 Hamap MF_00047 D-alanine--D-alanine ligase [ddl]. 15 321 33.505 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 Pfam PF01820 D-ala D-ala ligase N-terminus 16 100 5.8E-19 T 14-10-2018 IPR011127 D-alanine--D-alanine ligase, N-terminal domain KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 SUPERFAMILY SSF56059 111 316 2.57E-51 T 14-10-2018 Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 ProSitePatterns PS00844 D-alanine--D-alanine ligase signature 2. 263 291 - T 14-10-2018 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 Pfam PF07478 D-ala D-ala ligase C-terminus 118 316 3.1E-49 T 14-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 PIRSF PIRSF039102 12 67 1.3E-10 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 PIRSF PIRSF039102 57 328 1.9E-77 T 14-10-2018 IPR005905 D-alanine--D-alanine ligase GO:0005737|GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 Gene3D G3DSA:3.30.1490.20 125 194 4.5E-67 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 SUPERFAMILY SSF52440 14 110 1.53E-25 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 Gene3D G3DSA:3.40.50.20 4 98 1.9E-26 T 14-10-2018 Amico_1469 4a1cb091be053fe2accae13e2d0239e6 328 Gene3D G3DSA:3.30.470.20 99 317 4.5E-67 T 14-10-2018 Amico_0087 4ca0d869ad3a7d626597e31f0c477d49 308 SUPERFAMILY SSF51735 1 156 8.02E-22 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0087 4ca0d869ad3a7d626597e31f0c477d49 308 Gene3D G3DSA:3.40.50.720 1 177 3.4E-54 T 14-10-2018 Amico_0087 4ca0d869ad3a7d626597e31f0c477d49 308 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 178 302 1.8E-39 T 14-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain Amico_0087 4ca0d869ad3a7d626597e31f0c477d49 308 SUPERFAMILY SSF48179 178 302 1.46E-34 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Amico_0087 4ca0d869ad3a7d626597e31f0c477d49 308 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 303 5.6E-88 T 14-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 Amico_0087 4ca0d869ad3a7d626597e31f0c477d49 308 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 152 2.5E-44 T 14-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain Amico_0087 4ca0d869ad3a7d626597e31f0c477d49 308 Gene3D G3DSA:1.10.1040.10 178 307 2.0E-43 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 13 244 4.5E-69 T 14-10-2018 Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 140 168 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 TIGRFAM TIGR01830 3oxo_ACP_reduc: 3-oxoacyl-[acyl-carrier-protein] reductase 6 243 2.0E-105 T 14-10-2018 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase GO:0004316|GO:0006633|GO:0051287|GO:0055114 KEGG: 00061+1.1.1.100|KEGG: 00780+1.1.1.100|MetaCyc: PWY-5367|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 80 91 1.4E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 207 227 1.4E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 5 22 1.4E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 153 172 1.4E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 127 143 1.4E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 174 191 1.4E-48 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 SMART SM00822 This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. 4 184 9.8E-6 T 14-10-2018 Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 SUPERFAMILY SSF51735 3 245 1.01E-88 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 153 172 4.5E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 80 91 4.5E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 133 141 4.5E-15 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1063 a2f6c7e15ba3d57827c0de4a89510ecc 246 Gene3D G3DSA:3.40.50.720 1 246 1.0E-86 T 14-10-2018 Amico_0553 752897dfecc1103e4c992a06d1c3da9d 82 Gene3D G3DSA:3.30.300.20 3 82 3.2E-8 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Amico_0553 752897dfecc1103e4c992a06d1c3da9d 82 SUPERFAMILY SSF54814 26 65 4.45E-6 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Amico_0553 752897dfecc1103e4c992a06d1c3da9d 82 Pfam PF13083 KH domain 6 79 2.5E-20 T 14-10-2018 Amico_0553 752897dfecc1103e4c992a06d1c3da9d 82 Hamap MF_00088 UPF0109 protein . 5 80 14.717 T 14-10-2018 IPR020627 Uncharacterised protein family UPF0109 Amico_1763 a161c8bbdcc502c9549b28d20116860f 220 SUPERFAMILY SSF46785 9 76 2.89E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1763 a161c8bbdcc502c9549b28d20116860f 220 Pfam PF07729 FCD domain 83 205 5.1E-26 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1763 a161c8bbdcc502c9549b28d20116860f 220 Gene3D G3DSA:1.20.120.530 71 214 1.5E-30 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1763 a161c8bbdcc502c9549b28d20116860f 220 SMART SM00345 14 72 1.1E-16 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1763 a161c8bbdcc502c9549b28d20116860f 220 Gene3D G3DSA:1.10.10.10 7 70 4.8E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1763 a161c8bbdcc502c9549b28d20116860f 220 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 1.2E-5 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1763 a161c8bbdcc502c9549b28d20116860f 220 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 1.2E-5 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1763 a161c8bbdcc502c9549b28d20116860f 220 SMART SM00895 82 207 3.8E-20 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1763 a161c8bbdcc502c9549b28d20116860f 220 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 70 1.8E-17 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1763 a161c8bbdcc502c9549b28d20116860f 220 SUPERFAMILY SSF48008 78 213 1.73E-28 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1686 6fa8abc2e60c62166eb023f1dbcc4b80 237 Gene3D G3DSA:3.40.50.1860 12 227 4.4E-63 T 14-10-2018 Amico_1686 6fa8abc2e60c62166eb023f1dbcc4b80 237 Pfam PF01177 Asp/Glu/Hydantoin racemase 15 226 5.5E-48 T 14-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Amico_1686 6fa8abc2e60c62166eb023f1dbcc4b80 237 ProSitePatterns PS00923 Aspartate and glutamate racemases signature 1. 87 95 - T 14-10-2018 IPR018187 Asp/Glu racemase, active site 1 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Amico_1686 6fa8abc2e60c62166eb023f1dbcc4b80 237 SUPERFAMILY SSF53681 10 120 6.32E-30 T 14-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Amico_1686 6fa8abc2e60c62166eb023f1dbcc4b80 237 TIGRFAM TIGR00035 asp_race: aspartate racemase 10 229 2.7E-48 T 14-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 Amico_1686 6fa8abc2e60c62166eb023f1dbcc4b80 237 SUPERFAMILY SSF53681 111 212 1.98E-14 T 14-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Amico_1686 6fa8abc2e60c62166eb023f1dbcc4b80 237 Gene3D G3DSA:3.40.50.1860 113 221 4.4E-63 T 14-10-2018 Amico_0614 32ef1a50ad94a6548a7982c12c6b7ba7 276 ProSitePatterns PS01296 RsmI AdoMet-dependent methyltransferase protein family signature. 80 91 - T 14-10-2018 IPR018063 SAM-dependent methyltransferase RsmI, conserved site GO:0008168 Amico_0614 32ef1a50ad94a6548a7982c12c6b7ba7 276 SUPERFAMILY SSF53790 3 218 3.27E-72 T 14-10-2018 IPR035996 Tetrapyrrole methylase superfamily GO:0008168 Reactome: R-HSA-5358493 Amico_0614 32ef1a50ad94a6548a7982c12c6b7ba7 276 Gene3D G3DSA:3.40.1010.10 1 109 1.7E-42 T 14-10-2018 IPR014777 Tetrapyrrole methylase, subdomain 1 GO:0008168 Reactome: R-HSA-5358493 Amico_0614 32ef1a50ad94a6548a7982c12c6b7ba7 276 Gene3D G3DSA:3.30.950.10 110 224 3.6E-31 T 14-10-2018 IPR014776 Tetrapyrrole methylase, subdomain 2 GO:0008168 Reactome: R-HSA-5358493 Amico_0614 32ef1a50ad94a6548a7982c12c6b7ba7 276 Pfam PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases 3 199 5.3E-24 T 14-10-2018 IPR000878 Tetrapyrrole methylase GO:0008168 Reactome: R-HSA-5358493 Amico_0614 32ef1a50ad94a6548a7982c12c6b7ba7 276 PIRSF PIRSF005917 1 273 8.2E-90 T 14-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Amico_0614 32ef1a50ad94a6548a7982c12c6b7ba7 276 TIGRFAM TIGR00096 TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 3 262 1.3E-69 T 14-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Amico_0614 32ef1a50ad94a6548a7982c12c6b7ba7 276 Hamap MF_01877 Ribosomal RNA small subunit methyltransferase I [rsmI]. 2 220 34.932 T 14-10-2018 IPR008189 rRNA small subunit methyltransferase I GO:0008168 Amico_0244 4470fe7de9504b05bc7aa7662db47146 360 Gene3D G3DSA:3.40.50.2300 34 287 1.9E-139 T 14-10-2018 Amico_0244 4470fe7de9504b05bc7aa7662db47146 360 Gene3D G3DSA:3.40.50.2300 134 350 1.9E-139 T 14-10-2018 Amico_0244 4470fe7de9504b05bc7aa7662db47146 360 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 32 315 1.6E-65 T 14-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 Amico_0244 4470fe7de9504b05bc7aa7662db47146 360 SUPERFAMILY SSF53822 77 258 1.88E-5 T 14-10-2018 IPR028082 Periplasmic binding protein-like I Amico_0795 6c839536059cac2f6c399bb35f99b78a 377 SUPERFAMILY SSF52518 4 259 9.32E-74 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_0795 6c839536059cac2f6c399bb35f99b78a 377 Gene3D G3DSA:3.40.50.920 265 377 6.5E-22 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_0795 6c839536059cac2f6c399bb35f99b78a 377 SUPERFAMILY SSF52922 267 375 2.14E-21 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_0795 6c839536059cac2f6c399bb35f99b78a 377 Gene3D G3DSA:3.40.50.970 2 193 3.2E-75 T 14-10-2018 Amico_0795 6c839536059cac2f6c399bb35f99b78a 377 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 275 369 1.3E-21 T 14-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Amico_0795 6c839536059cac2f6c399bb35f99b78a 377 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 16 250 2.8E-67 T 14-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Amico_0705 d690ec1e0a5515037baf1d695f5b0681 65 Pfam PF01632 Ribosomal protein L35 2 62 9.5E-22 T 14-10-2018 IPR021137 Ribosomal protein L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0705 d690ec1e0a5515037baf1d695f5b0681 65 Hamap MF_00514 50S ribosomal protein L35 [rpmI]. 1 64 15.516 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Amico_0705 d690ec1e0a5515037baf1d695f5b0681 65 PRINTS PR00064 Ribosomal protein L35 signature 21 35 6.4E-11 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Amico_0705 d690ec1e0a5515037baf1d695f5b0681 65 PRINTS PR00064 Ribosomal protein L35 signature 36 54 6.4E-11 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Amico_0705 d690ec1e0a5515037baf1d695f5b0681 65 PRINTS PR00064 Ribosomal protein L35 signature 3 20 6.4E-11 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Amico_0705 d690ec1e0a5515037baf1d695f5b0681 65 TIGRFAM TIGR00001 rpmI_bact: ribosomal protein bL35 2 64 3.1E-21 T 14-10-2018 IPR001706 Ribosomal protein L35, non-mitochondrial GO:0003735|GO:0005840|GO:0006412 Amico_0705 d690ec1e0a5515037baf1d695f5b0681 65 Gene3D G3DSA:2.40.50.530 1 65 1.8E-23 T 14-10-2018 Amico_0705 d690ec1e0a5515037baf1d695f5b0681 65 SUPERFAMILY SSF143034 2 64 1.83E-20 T 14-10-2018 IPR037229 Ribosomal protein L35 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0705 d690ec1e0a5515037baf1d695f5b0681 65 ProSitePatterns PS00936 Ribosomal protein L35 signature. 5 31 - T 14-10-2018 IPR018265 Ribosomal protein L35, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0949 7690c3c83d36a842324d417df378bd07 391 SUPERFAMILY SSF52540 119 359 5.98E-21 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0949 7690c3c83d36a842324d417df378bd07 391 Gene3D G3DSA:3.40.50.300 101 371 2.4E-35 T 14-10-2018 Amico_0949 7690c3c83d36a842324d417df378bd07 391 Pfam PF03796 DnaB-like helicase C terminal domain 121 365 1.2E-23 T 14-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 Amico_1688 d083aba754f589014dc14670ba19e88a 264 Pfam PF09339 IclR helix-turn-helix domain 12 60 4.9E-12 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_1688 d083aba754f589014dc14670ba19e88a 264 Gene3D G3DSA:1.10.10.10 10 80 1.5E-16 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1688 d083aba754f589014dc14670ba19e88a 264 Pfam PF01614 Bacterial transcriptional regulator 131 251 2.7E-32 T 14-10-2018 IPR014757 Transcription regulator IclR, C-terminal Amico_1688 d083aba754f589014dc14670ba19e88a 264 SUPERFAMILY SSF46785 12 82 2.82E-12 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1688 d083aba754f589014dc14670ba19e88a 264 SUPERFAMILY SSF55781 74 255 7.85E-44 T 14-10-2018 Amico_1688 d083aba754f589014dc14670ba19e88a 264 SMART SM00346 10 99 9.2E-13 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_1688 d083aba754f589014dc14670ba19e88a 264 Gene3D G3DSA:3.30.450.40 81 261 3.0E-53 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_0859 6ae86b2ce3a606bfefa2ca568b301f97 329 SUPERFAMILY SSF102114 75 323 2.22E-27 T 14-10-2018 Amico_0859 6ae86b2ce3a606bfefa2ca568b301f97 329 PIRSF PIRSF004869 2 305 4.4E-73 T 14-10-2018 IPR016431 Pyruvate-formate lyase-activating enzyme, predicted Amico_0859 6ae86b2ce3a606bfefa2ca568b301f97 329 Pfam PF04055 Radical SAM superfamily 82 222 2.0E-17 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_0859 6ae86b2ce3a606bfefa2ca568b301f97 329 Pfam PF13353 4Fe-4S single cluster domain 80 173 8.7E-6 T 14-10-2018 Amico_0859 6ae86b2ce3a606bfefa2ca568b301f97 329 TIGRFAM TIGR04337 AmmeMemoSam_rS: AmmeMemoRadiSam system radical SAM enzyme 7 325 2.1E-83 T 14-10-2018 IPR027596 AmmeMemoRadiSam system radical SAM enzyme Amico_0859 6ae86b2ce3a606bfefa2ca568b301f97 329 Gene3D G3DSA:3.20.20.70 67 276 2.1E-29 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0573 ba031073cdbd55e521710b3d5184867f 302 SUPERFAMILY SSF55060 166 272 3.35E-24 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Amico_0573 ba031073cdbd55e521710b3d5184867f 302 Pfam PF00288 GHMP kinases N terminal domain 86 142 2.1E-8 T 14-10-2018 IPR006204 GHMP kinase N-terminal domain GO:0005524 Amico_0573 ba031073cdbd55e521710b3d5184867f 302 Gene3D G3DSA:3.30.70.890 162 266 1.2E-77 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Amico_0573 ba031073cdbd55e521710b3d5184867f 302 ProSitePatterns PS00627 GHMP kinases putative ATP-binding domain. 88 99 - T 14-10-2018 IPR006203 GHMP kinase, ATP-binding, conserved site GO:0005524 Amico_0573 ba031073cdbd55e521710b3d5184867f 302 TIGRFAM TIGR00191 thrB: homoserine kinase 4 301 1.7E-69 T 14-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 Amico_0573 ba031073cdbd55e521710b3d5184867f 302 PIRSF PIRSF000676 1 302 8.5E-77 T 14-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 Amico_0573 ba031073cdbd55e521710b3d5184867f 302 Gene3D G3DSA:3.30.230.10 6 161 1.2E-77 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Amico_0573 ba031073cdbd55e521710b3d5184867f 302 Hamap MF_00384 Homoserine kinase [thrB]. 6 302 27.348 T 14-10-2018 IPR000870 Homoserine kinase GO:0004413|GO:0005524|GO:0006566 KEGG: 00260+2.7.1.39|MetaCyc: PWY-702 Amico_0573 ba031073cdbd55e521710b3d5184867f 302 SUPERFAMILY SSF54211 4 159 1.29E-25 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0573 ba031073cdbd55e521710b3d5184867f 302 PRINTS PR00958 Homoserine kinase signature 169 186 1.4E-33 T 14-10-2018 Amico_0573 ba031073cdbd55e521710b3d5184867f 302 PRINTS PR00958 Homoserine kinase signature 11 26 1.4E-33 T 14-10-2018 Amico_0573 ba031073cdbd55e521710b3d5184867f 302 PRINTS PR00958 Homoserine kinase signature 95 110 1.4E-33 T 14-10-2018 Amico_0573 ba031073cdbd55e521710b3d5184867f 302 PRINTS PR00958 Homoserine kinase signature 129 142 1.4E-33 T 14-10-2018 Amico_0573 ba031073cdbd55e521710b3d5184867f 302 PRINTS PR00958 Homoserine kinase signature 249 264 1.4E-33 T 14-10-2018 Amico_1877 c6f0dc8d4bfc07793a25dcb602be1380 330 Gene3D G3DSA:3.40.190.170 24 325 3.1E-111 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1877 c6f0dc8d4bfc07793a25dcb602be1380 330 PIRSF PIRSF006470 2 328 1.1E-108 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_1877 c6f0dc8d4bfc07793a25dcb602be1380 330 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 31 309 9.3E-97 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_1877 c6f0dc8d4bfc07793a25dcb602be1380 330 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 31 286 2.7E-87 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_0183 055d77494096a63627e2273d7a82591f 92 Gene3D G3DSA:3.30.70.100 1 90 3.2E-29 T 14-10-2018 Amico_0183 055d77494096a63627e2273d7a82591f 92 PRINTS PR00112 Acylphosphatase signature 25 50 1.1E-5 T 14-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Amico_0183 055d77494096a63627e2273d7a82591f 92 PRINTS PR00112 Acylphosphatase signature 4 19 1.1E-5 T 14-10-2018 IPR020456 Acylphosphatase GO:0003998 KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Amico_0183 055d77494096a63627e2273d7a82591f 92 SUPERFAMILY SSF54975 2 90 7.63E-27 T 14-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Amico_0183 055d77494096a63627e2273d7a82591f 92 Pfam PF00708 Acylphosphatase 5 89 5.4E-24 T 14-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Amico_0183 055d77494096a63627e2273d7a82591f 92 ProSitePatterns PS00151 Acylphosphatase signature 2. 33 49 - T 14-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Amico_0607 9bdab8db73a1ba5225de711039f97bf3 90 Pfam PF03776 Septum formation topological specificity factor MinE 14 79 7.4E-25 T 14-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Amico_0607 9bdab8db73a1ba5225de711039f97bf3 90 TIGRFAM TIGR01215 minE: cell division topological specificity factor MinE 4 79 1.1E-25 T 14-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Amico_0607 9bdab8db73a1ba5225de711039f97bf3 90 Gene3D G3DSA:3.30.1070.10 18 80 1.8E-17 T 14-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 Amico_0607 9bdab8db73a1ba5225de711039f97bf3 90 Hamap MF_00262 Cell division topological specificity factor [minE]. 4 84 15.875 T 14-10-2018 IPR005527 Cell division topological specificity factor MinE GO:0032955|GO:0051301 Amico_0607 9bdab8db73a1ba5225de711039f97bf3 90 SUPERFAMILY SSF55229 31 82 4.71E-12 T 14-10-2018 IPR036707 Cell division topological specificity factor MinE superfamily GO:0032955|GO:0051301 Amico_0081 c9a4b520bb2e0f5a3de026efc64245ba 282 Pfam PF00639 PPIC-type PPIASE domain 156 234 8.4E-25 T 14-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Amico_0081 c9a4b520bb2e0f5a3de026efc64245ba 282 SUPERFAMILY SSF54534 139 234 1.83E-31 T 14-10-2018 Amico_0081 c9a4b520bb2e0f5a3de026efc64245ba 282 Pfam PF13624 SurA N-terminal domain 1 93 3.7E-7 T 14-10-2018 Amico_0081 c9a4b520bb2e0f5a3de026efc64245ba 282 SUPERFAMILY SSF109998 34 172 1.69E-17 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily Amico_0081 c9a4b520bb2e0f5a3de026efc64245ba 282 Gene3D G3DSA:3.10.50.40 140 261 2.2E-32 T 14-10-2018 Amico_1723 7e0540781f7c67121477e024b81c5f1e 337 Gene3D G3DSA:3.40.47.10 1 337 6.8E-111 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_1723 7e0540781f7c67121477e024b81c5f1e 337 SUPERFAMILY SSF53901 4 335 8.65E-48 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_1723 7e0540781f7c67121477e024b81c5f1e 337 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 107 185 4.7E-18 T 14-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Amico_1723 7e0540781f7c67121477e024b81c5f1e 337 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 246 335 9.8E-32 T 14-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Amico_1087 5b872b6fd21ddd6a1f5bf23e9ab8464c 378 SUPERFAMILY SSF52540 196 370 4.71E-34 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1087 5b872b6fd21ddd6a1f5bf23e9ab8464c 378 Pfam PF13167 GTP-binding GTPase N-terminal 34 118 1.6E-23 T 14-10-2018 IPR025121 GTPase HflX, N-terminal Amico_1087 5b872b6fd21ddd6a1f5bf23e9ab8464c 378 Pfam PF16360 GTP-binding GTPase Middle Region 121 199 9.4E-24 T 14-10-2018 IPR032305 GTP-binding protein, middle domain Amico_1087 5b872b6fd21ddd6a1f5bf23e9ab8464c 378 Pfam PF01926 50S ribosome-binding GTPase 207 326 1.5E-13 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_1087 5b872b6fd21ddd6a1f5bf23e9ab8464c 378 Gene3D G3DSA:3.40.50.300 204 376 6.4E-35 T 14-10-2018 Amico_1087 5b872b6fd21ddd6a1f5bf23e9ab8464c 378 Hamap MF_00900 GTPase HflX [hflX]. 34 372 42.615 T 14-10-2018 IPR016496 GTPase HflX GO:0005525 Amico_1087 5b872b6fd21ddd6a1f5bf23e9ab8464c 378 PIRSF PIRSF006809 9 378 4.6E-113 T 14-10-2018 IPR016496 GTPase HflX GO:0005525 Amico_1087 5b872b6fd21ddd6a1f5bf23e9ab8464c 378 Gene3D G3DSA:3.40.50.11060 26 146 1.2E-30 T 14-10-2018 Amico_1087 5b872b6fd21ddd6a1f5bf23e9ab8464c 378 TIGRFAM TIGR03156 GTP_HflX: GTP-binding protein HflX 16 371 1.2E-108 T 14-10-2018 IPR016496 GTPase HflX GO:0005525 Amico_1350 71608b71227564e8bda0556c1864a5ee 153 Pfam PF01668 SmpB protein 7 148 3.2E-63 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 Amico_1350 71608b71227564e8bda0556c1864a5ee 153 ProSitePatterns PS01317 SsrA-binding protein. 24 36 - T 14-10-2018 IPR020081 SsrA-binding protein, conserved site Amico_1350 71608b71227564e8bda0556c1864a5ee 153 Gene3D G3DSA:2.40.280.10 2 126 4.6E-51 T 14-10-2018 IPR023620 Small protein B Amico_1350 71608b71227564e8bda0556c1864a5ee 153 ProDom PD004488 SSRA-BINDING RNA-BINDING SMPB SMALL B TMRNA-BINDING SSRA 3D-STRUCTURE HOMOLOG BINDING 6 130 1.0E-41 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 Amico_1350 71608b71227564e8bda0556c1864a5ee 153 Hamap MF_00023 SsrA-binding protein [smpB]. 1 153 71.792 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 Amico_1350 71608b71227564e8bda0556c1864a5ee 153 TIGRFAM TIGR00086 smpB: SsrA-binding protein 6 147 1.7E-60 T 14-10-2018 IPR000037 SsrA-binding protein GO:0003723 Amico_1350 71608b71227564e8bda0556c1864a5ee 153 SUPERFAMILY SSF74982 5 130 4.19E-50 T 14-10-2018 IPR023620 Small protein B Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 TIGRFAM TIGR00922 nusG: transcription termination/antitermination factor NusG 10 180 7.1E-56 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 SMART SM00739 127 154 2.8E-6 T 14-10-2018 IPR005824 KOW Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 Gene3D G3DSA:3.30.70.940 2 121 2.0E-44 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 Gene3D G3DSA:2.30.30.30 122 181 7.8E-17 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 SMART SM00738 7 115 2.8E-46 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 Pfam PF00467 KOW motif 130 158 2.0E-8 T 14-10-2018 IPR005824 KOW Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 Pfam PF02357 Transcription termination factor nusG 9 112 5.0E-27 T 14-10-2018 IPR006645 NusG, N-terminal GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 Hamap MF_00948 Transcription termination/antitermination protein NusG [nusG]. 7 181 23.086 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 SUPERFAMILY SSF50104 125 180 1.66E-12 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 PRINTS PR00338 Transcription termination factor NUSG signature 157 173 1.5E-12 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 PRINTS PR00338 Transcription termination factor NUSG signature 62 74 1.5E-12 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 PRINTS PR00338 Transcription termination factor NUSG signature 139 154 1.5E-12 T 14-10-2018 IPR001062 Transcription antitermination protein, NusG GO:0032784 Amico_0314 f9717e18edd2c648c920dcaf245beb47 181 SUPERFAMILY SSF82679 8 117 1.57E-40 T 14-10-2018 IPR036735 NusG, N-terminal domain superfamily GO:0006355 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-75955|Reactome: R-HSA-77075 Amico_0110 74f46318f46a80c50569824459fb7d49 266 Gene3D G3DSA:3.30.70.20 136 195 1.3E-13 T 14-10-2018 Amico_0110 74f46318f46a80c50569824459fb7d49 266 SUPERFAMILY SSF54862 123 234 1.6E-17 T 14-10-2018 Amico_0110 74f46318f46a80c50569824459fb7d49 266 Gene3D G3DSA:3.30.70.20 201 236 7.3E-6 T 14-10-2018 Amico_0110 74f46318f46a80c50569824459fb7d49 266 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 246 257 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_0110 74f46318f46a80c50569824459fb7d49 266 Pfam PF00037 4Fe-4S binding domain 166 188 4.9E-9 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_0110 74f46318f46a80c50569824459fb7d49 266 Pfam PF12838 4Fe-4S dicluster domain 217 260 3.0E-8 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_0110 74f46318f46a80c50569824459fb7d49 266 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 172 183 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_0110 74f46318f46a80c50569824459fb7d49 266 Gene3D G3DSA:3.20.20.20 37 103 6.1E-13 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Amico_0110 74f46318f46a80c50569824459fb7d49 266 Hamap MF_00463 Ion-translocating oxidoreductase complex subunit B [rsxB]. 5 194 28.566 T 14-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Amico_0110 74f46318f46a80c50569824459fb7d49 266 Gene3D G3DSA:3.30.70.20 237 265 2.8E-6 T 14-10-2018 Amico_0110 74f46318f46a80c50569824459fb7d49 266 TIGRFAM TIGR01944 rnfB: electron transport complex, RnfABCDGE type, B subunit 8 94 8.0E-25 T 14-10-2018 IPR010207 Ion-translocating oxidoreductase complex, RnfB/RsxB GO:0009055|GO:0051536 Amico_0110 74f46318f46a80c50569824459fb7d49 266 Pfam PF04060 Putative Fe-S cluster 45 76 8.2E-14 T 14-10-2018 IPR007202 4Fe-4S domain GO:0051536 Amico_0850 07e8d8016dc165263572f7cb172ac5ec 621 SUPERFAMILY SSF52518 307 495 5.27E-49 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_0850 07e8d8016dc165263572f7cb172ac5ec 621 Pfam PF02780 Transketolase, C-terminal domain 489 608 2.3E-21 T 14-10-2018 IPR033248 Transketolase, C-terminal domain Amico_0850 07e8d8016dc165263572f7cb172ac5ec 621 TIGRFAM TIGR00204 dxs: 1-deoxy-D-xylulose-5-phosphate synthase 6 610 3.7E-194 T 14-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Amico_0850 07e8d8016dc165263572f7cb172ac5ec 621 SUPERFAMILY SSF52518 3 371 7.29E-63 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_0850 07e8d8016dc165263572f7cb172ac5ec 621 Pfam PF13292 1-deoxy-D-xylulose-5-phosphate synthase 4 278 2.0E-103 T 14-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Amico_0850 07e8d8016dc165263572f7cb172ac5ec 621 Pfam PF02779 Transketolase, pyrimidine binding domain 310 469 2.0E-37 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Amico_0850 07e8d8016dc165263572f7cb172ac5ec 621 Gene3D G3DSA:3.40.50.920 487 618 1.7E-23 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_0850 07e8d8016dc165263572f7cb172ac5ec 621 SMART SM00861 309 472 1.7E-56 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Amico_0850 07e8d8016dc165263572f7cb172ac5ec 621 Gene3D G3DSA:3.40.50.970 307 480 8.6E-62 T 14-10-2018 Amico_0850 07e8d8016dc165263572f7cb172ac5ec 621 SUPERFAMILY SSF52922 487 613 3.8E-24 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_0850 07e8d8016dc165263572f7cb172ac5ec 621 Hamap MF_00315 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 3 617 37.126 T 14-10-2018 IPR005477 Deoxyxylulose-5-phosphate synthase GO:0008661|GO:0016114 KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 SUPERFAMILY SSF55781 302 474 1.81E-19 T 14-10-2018 Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 Gene3D G3DSA:3.30.70.270 629 792 2.8E-48 T 14-10-2018 Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 Gene3D G3DSA:3.30.450.40 94 253 1.6E-18 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 Gene3D G3DSA:3.30.450.40 461 628 1.6E-14 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 Pfam PF13185 GAF domain 123 250 7.0E-8 T 14-10-2018 IPR003018 GAF domain GO:0005515 Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 Pfam PF00990 Diguanylate cyclase, GGDEF domain 632 786 9.8E-41 T 14-10-2018 IPR000160 GGDEF domain Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 SMART SM00267 621 790 1.6E-46 T 14-10-2018 IPR000160 GGDEF domain Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 630 789 3.2E-46 T 14-10-2018 IPR000160 GGDEF domain Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 SUPERFAMILY SSF55073 637 787 2.28E-41 T 14-10-2018 IPR029787 Nucleotide cyclase Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 SUPERFAMILY SSF55781 448 617 1.98E-15 T 14-10-2018 Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 SMART SM00065 481 629 0.018 T 14-10-2018 IPR003018 GAF domain GO:0005515 Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 SMART SM00065 317 459 2.5E-6 T 14-10-2018 IPR003018 GAF domain GO:0005515 Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 SMART SM00065 116 261 1.3E-4 T 14-10-2018 IPR003018 GAF domain GO:0005515 Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 Pfam PF01590 GAF domain 481 617 3.1E-6 T 14-10-2018 IPR003018 GAF domain GO:0005515 Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 Pfam PF01590 GAF domain 319 449 1.7E-7 T 14-10-2018 IPR003018 GAF domain GO:0005515 Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 Gene3D G3DSA:3.30.450.40 293 460 5.7E-18 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_1621 e410e510f9372305ccb08cb67c80fe48 794 SUPERFAMILY SSF55781 96 259 9.6E-22 T 14-10-2018 Amico_0983 cacdbbd3db863fbf1758f57c75e43637 154 Pfam PF02590 Predicted SPOUT methyltransferase 1 153 3.9E-46 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Amico_0983 cacdbbd3db863fbf1758f57c75e43637 154 PIRSF PIRSF004505 1 154 1.1E-44 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Amico_0983 cacdbbd3db863fbf1758f57c75e43637 154 Hamap MF_00658 Ribosomal RNA large subunit methyltransferase H [rlmH]. 1 154 24.202 T 14-10-2018 IPR003742 RNA methyltransferase RlmH GO:0005737|GO:0006364|GO:0008168 Amico_0983 cacdbbd3db863fbf1758f57c75e43637 154 SUPERFAMILY SSF75217 1 152 1.37E-38 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases Amico_0983 cacdbbd3db863fbf1758f57c75e43637 154 Gene3D G3DSA:3.40.1280.10 1 154 4.9E-46 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Amico_1162 cc5984732f7d09e79b0cbec2cb700383 239 ProSitePatterns PS01057 SAICAR synthetase signature 1. 86 100 - T 14-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1162 cc5984732f7d09e79b0cbec2cb700383 239 TIGRFAM TIGR00081 purC: phosphoribosylaminoimidazolesuccinocarboxamide synthase 2 236 7.2E-78 T 14-10-2018 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234 Amico_1162 cc5984732f7d09e79b0cbec2cb700383 239 Gene3D G3DSA:3.30.200.20 7 232 1.6E-95 T 14-10-2018 Amico_1162 cc5984732f7d09e79b0cbec2cb700383 239 Gene3D G3DSA:3.30.470.20 85 221 1.6E-95 T 14-10-2018 Amico_1162 cc5984732f7d09e79b0cbec2cb700383 239 ProSitePatterns PS01058 SAICAR synthetase signature 2. 173 181 - T 14-10-2018 IPR018236 SAICAR synthetase, conserved site GO:0004639|GO:0006164 KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1162 cc5984732f7d09e79b0cbec2cb700383 239 Hamap MF_00137 Phosphoribosylaminoimidazole-succinocarboxamide synthase [purC]. 4 235 33.018 T 14-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1162 cc5984732f7d09e79b0cbec2cb700383 239 SUPERFAMILY SSF56104 2 235 1.5E-84 T 14-10-2018 Amico_1162 cc5984732f7d09e79b0cbec2cb700383 239 Pfam PF01259 SAICAR synthetase 7 229 4.4E-68 T 14-10-2018 IPR028923 SAICAR synthetase/ADE2, N-terminal KEGG: 00230+6.3.2.6|MetaCyc: PWY-6123|MetaCyc: PWY-6124|MetaCyc: PWY-7234|Reactome: R-HSA-73817 Amico_1379 914be509dbb43131ad351f1f8efa5e5c 474 TIGRFAM TIGR00360 ComEC_N-term: ComEC/Rec2-related protein 224 380 4.4E-16 T 14-10-2018 IPR004477 ComEC/Rec2-related protein Amico_1379 914be509dbb43131ad351f1f8efa5e5c 474 Pfam PF03772 Competence protein 218 448 2.3E-32 T 14-10-2018 IPR004477 ComEC/Rec2-related protein Amico_1186 e24db2905e4ce32d00bbd139e7fb551c 186 Pfam PF01765 Ribosome recycling factor 20 182 2.9E-63 T 14-10-2018 IPR023584 Ribosome recycling factor domain Reactome: R-HSA-5419276 Amico_1186 e24db2905e4ce32d00bbd139e7fb551c 186 Hamap MF_00040 Ribosome-recycling factor [frr]. 3 185 27.186 T 14-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Amico_1186 e24db2905e4ce32d00bbd139e7fb551c 186 Gene3D G3DSA:1.10.132.20 12 182 4.7E-69 T 14-10-2018 Amico_1186 e24db2905e4ce32d00bbd139e7fb551c 186 TIGRFAM TIGR00496 frr: ribosome recycling factor 11 184 3.1E-67 T 14-10-2018 IPR002661 Ribosome recycling factor GO:0006412 Reactome: R-HSA-5419276 Amico_1186 e24db2905e4ce32d00bbd139e7fb551c 186 SUPERFAMILY SSF55194 4 183 4.84E-70 T 14-10-2018 IPR036191 RRF superfamily Reactome: R-HSA-5419276 Amico_1186 e24db2905e4ce32d00bbd139e7fb551c 186 Gene3D G3DSA:3.30.1360.40 31 105 4.7E-69 T 14-10-2018 Amico_1412 f6843e7559b6016947f5ca156133a88b 324 Gene3D G3DSA:3.40.50.720 97 280 9.7E-64 T 14-10-2018 Amico_1412 f6843e7559b6016947f5ca156133a88b 324 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 33 314 3.2E-14 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Amico_1412 f6843e7559b6016947f5ca156133a88b 324 SUPERFAMILY SSF52283 30 117 5.1E-17 T 14-10-2018 Amico_1412 f6843e7559b6016947f5ca156133a88b 324 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 108 282 4.0E-40 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Amico_1412 f6843e7559b6016947f5ca156133a88b 324 SUPERFAMILY SSF51735 101 282 2.51E-43 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1412 f6843e7559b6016947f5ca156133a88b 324 Gene3D G3DSA:3.40.50.720 31 305 9.7E-64 T 14-10-2018 Amico_0415 af3dfb7189890a2f73b2bbed31e4fbe1 217 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 214 9.3E-25 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0415 af3dfb7189890a2f73b2bbed31e4fbe1 217 Gene3D G3DSA:1.10.3720.10 1 216 1.9E-59 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0415 af3dfb7189890a2f73b2bbed31e4fbe1 217 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 13 109 1.7E-30 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Amico_0415 af3dfb7189890a2f73b2bbed31e4fbe1 217 SUPERFAMILY SSF161098 12 200 1.3E-47 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1041 58fd40fb7a63a4fb652744dd260354db 233 Gene3D G3DSA:1.10.1670.10 29 224 2.1E-61 T 14-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Amico_1041 58fd40fb7a63a4fb652744dd260354db 233 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 47 189 2.0E-17 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Amico_1041 58fd40fb7a63a4fb652744dd260354db 233 SUPERFAMILY SSF48150 27 229 1.38E-53 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Amico_1041 58fd40fb7a63a4fb652744dd260354db 233 Gene3D G3DSA:1.10.340.30 32 152 2.1E-61 T 14-10-2018 Amico_1041 58fd40fb7a63a4fb652744dd260354db 233 SMART SM00525 207 227 1.2E-4 T 14-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Amico_1041 58fd40fb7a63a4fb652744dd260354db 233 PIRSF PIRSF001435 13 232 5.2E-50 T 14-10-2018 Amico_1041 58fd40fb7a63a4fb652744dd260354db 233 SMART SM00478 49 206 8.8E-34 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Amico_1648 19a789199eb3395fd4c07a5ae65bc077 342 Pfam PF01244 Membrane dipeptidase (Peptidase family M19) 11 339 2.9E-82 T 14-10-2018 IPR008257 Peptidase M19 GO:0006508|GO:0016805 MetaCyc: PWY-7533|Reactome: R-HSA-2142691|Reactome: R-HSA-5423646 Amico_1648 19a789199eb3395fd4c07a5ae65bc077 342 Gene3D G3DSA:3.20.20.140 3 342 7.9E-95 T 14-10-2018 Amico_1648 19a789199eb3395fd4c07a5ae65bc077 342 SUPERFAMILY SSF51556 5 341 1.56E-76 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_1075 4a3713449af17253125a373a0f338e00 132 Pfam PF01980 Uncharacterised protein family UPF0066 19 129 1.8E-29 T 14-10-2018 IPR023370 YaeB-like, N-terminal domain Amico_1075 4a3713449af17253125a373a0f338e00 132 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 3 128 9.7E-28 T 14-10-2018 IPR023370 YaeB-like, N-terminal domain Amico_1075 4a3713449af17253125a373a0f338e00 132 Gene3D G3DSA:2.40.30.70 1 130 1.5E-32 T 14-10-2018 IPR036414 YaeB, N-terminal domain superfamily Amico_1075 4a3713449af17253125a373a0f338e00 132 SUPERFAMILY SSF118196 1 129 5.75E-37 T 14-10-2018 IPR036413 YaeB-like superfamily Amico_1414 049c355f9f9b27a8696d4309279bbbf5 122 TIGRFAM TIGR03367 queuosine_QueD: queuosine biosynthesis protein QueD 3 90 6.3E-28 T 14-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 Amico_1414 049c355f9f9b27a8696d4309279bbbf5 122 Gene3D G3DSA:3.30.479.10 1 117 5.2E-35 T 14-10-2018 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily Reactome: R-HSA-1474151 Amico_1414 049c355f9f9b27a8696d4309279bbbf5 122 SUPERFAMILY SSF55620 2 117 6.12E-35 T 14-10-2018 Amico_1414 049c355f9f9b27a8696d4309279bbbf5 122 Pfam PF01242 6-pyruvoyl tetrahydropterin synthase 3 117 1.0E-32 T 14-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 Amico_1414 049c355f9f9b27a8696d4309279bbbf5 122 PIRSF PIRSF006113 1 118 5.3E-32 T 14-10-2018 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family Reactome: R-HSA-1474151 Amico_1874 367cb38400d5dd46d971f8111e57cd8d 214 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 4.5E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1874 367cb38400d5dd46d971f8111e57cd8d 214 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 4.5E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1874 367cb38400d5dd46d971f8111e57cd8d 214 SMART SM00345 10 68 4.7E-13 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1874 367cb38400d5dd46d971f8111e57cd8d 214 Pfam PF00392 Bacterial regulatory proteins, gntR family 6 68 7.2E-19 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1874 367cb38400d5dd46d971f8111e57cd8d 214 SMART SM00895 78 200 0.0027 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1874 367cb38400d5dd46d971f8111e57cd8d 214 SUPERFAMILY SSF48008 75 207 1.94E-18 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1874 367cb38400d5dd46d971f8111e57cd8d 214 SUPERFAMILY SSF46785 3 72 9.78E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1874 367cb38400d5dd46d971f8111e57cd8d 214 Pfam PF07729 FCD domain 78 199 3.6E-14 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1874 367cb38400d5dd46d971f8111e57cd8d 214 Gene3D G3DSA:1.20.120.530 73 213 6.4E-18 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1874 367cb38400d5dd46d971f8111e57cd8d 214 Gene3D G3DSA:1.10.10.10 2 68 2.2E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1544 5852c80d92be5fd25f8f641c887c364c 511 Pfam PF13556 PucR C-terminal helix-turn-helix domain 447 505 6.2E-17 T 14-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain Amico_1544 5852c80d92be5fd25f8f641c887c364c 511 Gene3D G3DSA:1.10.10.2840 379 508 2.4E-13 T 14-10-2018 Amico_0273 f2bd460557d0081543effdfb2dbce9b6 268 SUPERFAMILY SSF52402 134 266 9.21E-17 T 14-10-2018 Amico_0273 f2bd460557d0081543effdfb2dbce9b6 268 SUPERFAMILY SSF52402 3 99 7.03E-12 T 14-10-2018 Amico_0273 f2bd460557d0081543effdfb2dbce9b6 268 Pfam PF00582 Universal stress protein family 3 95 3.8E-8 T 14-10-2018 IPR006016 UspA Amico_0273 f2bd460557d0081543effdfb2dbce9b6 268 Pfam PF00582 Universal stress protein family 134 266 5.1E-12 T 14-10-2018 IPR006016 UspA Amico_0273 f2bd460557d0081543effdfb2dbce9b6 268 PRINTS PR01438 Universal stress protein signature 244 266 6.8E-9 T 14-10-2018 IPR006015 Universal stress protein A Amico_0273 f2bd460557d0081543effdfb2dbce9b6 268 PRINTS PR01438 Universal stress protein signature 226 238 6.8E-9 T 14-10-2018 IPR006015 Universal stress protein A Amico_0273 f2bd460557d0081543effdfb2dbce9b6 268 PRINTS PR01438 Universal stress protein signature 2 20 6.8E-9 T 14-10-2018 IPR006015 Universal stress protein A Amico_0273 f2bd460557d0081543effdfb2dbce9b6 268 Gene3D G3DSA:3.40.50.620 2 108 2.1E-10 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0273 f2bd460557d0081543effdfb2dbce9b6 268 Gene3D G3DSA:3.40.50.620 122 265 6.5E-15 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1530 7921904d47505513d19cd306d97aca10 184 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 9 181 7.5E-32 T 14-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Amico_1530 7921904d47505513d19cd306d97aca10 184 Gene3D G3DSA:3.40.920.10 1 183 7.4E-39 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_1530 7921904d47505513d19cd306d97aca10 184 SUPERFAMILY SSF53323 2 183 4.84E-31 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_1225 62d5f6948d6871c5ae14c670343ecba6 429 Gene3D G3DSA:3.40.50.11440 34 275 2.6E-131 T 14-10-2018 Amico_1225 62d5f6948d6871c5ae14c670343ecba6 429 Pfam PF09861 Domain of unknown function (DUF2088) 8 204 4.8E-72 T 14-10-2018 IPR018657 LarA-like, N-terminal GO:0050043 KEGG: 00620+5.1.2.1 Amico_1225 62d5f6948d6871c5ae14c670343ecba6 429 Gene3D G3DSA:3.90.226.30 6 420 2.6E-131 T 14-10-2018 Amico_1322 bcb7e0b74da19a61202e412a9926f49c 226 SUPERFAMILY SSF48008 80 205 2.88E-11 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1322 bcb7e0b74da19a61202e412a9926f49c 226 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 75 3.4E-17 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1322 bcb7e0b74da19a61202e412a9926f49c 226 SUPERFAMILY SSF46785 8 84 1.37E-17 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1322 bcb7e0b74da19a61202e412a9926f49c 226 Gene3D G3DSA:1.20.120.530 79 209 2.5E-10 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1322 bcb7e0b74da19a61202e412a9926f49c 226 SMART SM00345 16 75 7.4E-16 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1322 bcb7e0b74da19a61202e412a9926f49c 226 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 49 65 6.7E-6 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1322 bcb7e0b74da19a61202e412a9926f49c 226 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 35 49 6.7E-6 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1322 bcb7e0b74da19a61202e412a9926f49c 226 Pfam PF07729 FCD domain 85 205 1.4E-6 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1322 bcb7e0b74da19a61202e412a9926f49c 226 Gene3D G3DSA:1.10.10.10 3 76 1.1E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1268 8e1f3914e0db85745a32668135f61b17 521 Pfam PF00361 Proton-conducting membrane transporter 141 443 8.0E-56 T 14-10-2018 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1268 8e1f3914e0db85745a32668135f61b17 521 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 320 332 1.2E-14 T 14-10-2018 Amico_1268 8e1f3914e0db85745a32668135f61b17 521 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 89 114 1.2E-14 T 14-10-2018 Amico_1268 8e1f3914e0db85745a32668135f61b17 521 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 164 185 1.2E-14 T 14-10-2018 Amico_1268 8e1f3914e0db85745a32668135f61b17 521 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 117 137 1.2E-14 T 14-10-2018 Amico_1268 8e1f3914e0db85745a32668135f61b17 521 PRINTS PR01434 NADH-ubiquinone oxidoreductase chain 5 signature 227 248 1.2E-14 T 14-10-2018 Amico_0708 65c1e105e71c67ae254c4f5c7a3f07e7 231 Gene3D G3DSA:3.40.50.720 2 142 4.6E-32 T 14-10-2018 Amico_0708 65c1e105e71c67ae254c4f5c7a3f07e7 231 SUPERFAMILY SSF51735 8 137 2.7E-31 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0708 65c1e105e71c67ae254c4f5c7a3f07e7 231 SUPERFAMILY SSF116726 140 217 4.45E-13 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Amico_0708 65c1e105e71c67ae254c4f5c7a3f07e7 231 Pfam PF02254 TrkA-N domain 8 123 1.4E-24 T 14-10-2018 IPR003148 Regulator of K+ conductance, N-terminal GO:0006813 Amico_0708 65c1e105e71c67ae254c4f5c7a3f07e7 231 Pfam PF02080 TrkA-C domain 162 217 5.4E-12 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Amico_0708 65c1e105e71c67ae254c4f5c7a3f07e7 231 Gene3D G3DSA:3.30.70.1450 148 224 2.5E-14 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Amico_1727 11aa467ec3e63b6c6af0cd0a5ff51d91 331 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 3 121 3.7E-22 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Amico_1727 11aa467ec3e63b6c6af0cd0a5ff51d91 331 Gene3D G3DSA:3.40.50.720 3 314 2.1E-106 T 14-10-2018 Amico_1727 11aa467ec3e63b6c6af0cd0a5ff51d91 331 Gene3D G3DSA:3.30.360.10 131 330 2.1E-106 T 14-10-2018 Amico_1727 11aa467ec3e63b6c6af0cd0a5ff51d91 331 SUPERFAMILY SSF51735 2 158 4.37E-41 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1727 11aa467ec3e63b6c6af0cd0a5ff51d91 331 Pfam PF02894 Oxidoreductase family, C-terminal alpha/beta domain 135 248 1.1E-12 T 14-10-2018 IPR004104 Oxidoreductase, C-terminal GO:0016491|GO:0055114 Amico_1727 11aa467ec3e63b6c6af0cd0a5ff51d91 331 SUPERFAMILY SSF55347 131 272 1.24E-33 T 14-10-2018 Amico_1782 fe2b97396f11207ef35d1bd185f2f49f 407 Pfam PF07690 Major Facilitator Superfamily 11 259 4.0E-24 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Amico_1782 fe2b97396f11207ef35d1bd185f2f49f 407 Pfam PF07690 Major Facilitator Superfamily 267 401 1.2E-8 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Amico_1782 fe2b97396f11207ef35d1bd185f2f49f 407 SUPERFAMILY SSF103473 6 405 7.19E-44 T 14-10-2018 IPR036259 MFS transporter superfamily Amico_1782 fe2b97396f11207ef35d1bd185f2f49f 407 Gene3D G3DSA:1.20.1250.20 2 402 7.5E-38 T 14-10-2018 Amico_1859 085d68fd311477143d93b76b4dc71e7f 402 Pfam PF07687 Peptidase dimerisation domain 195 290 2.5E-16 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1859 085d68fd311477143d93b76b4dc71e7f 402 Gene3D G3DSA:3.40.630.10 15 383 6.6E-133 T 14-10-2018 Amico_1859 085d68fd311477143d93b76b4dc71e7f 402 Pfam PF01546 Peptidase family M20/M25/M40 73 381 3.3E-33 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1859 085d68fd311477143d93b76b4dc71e7f 402 SUPERFAMILY SSF53187 3 400 1.1E-78 T 14-10-2018 Amico_1859 085d68fd311477143d93b76b4dc71e7f 402 Gene3D G3DSA:3.30.70.360 190 305 6.6E-133 T 14-10-2018 Amico_1859 085d68fd311477143d93b76b4dc71e7f 402 SUPERFAMILY SSF55031 193 300 2.75E-32 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1859 085d68fd311477143d93b76b4dc71e7f 402 PIRSF PIRSF005962 1 402 9.5E-122 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_1859 085d68fd311477143d93b76b4dc71e7f 402 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 386 9.3E-105 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_0397 753074452949aaad4bdf2ecf380cb00d 426 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 204 420 3.4E-44 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Amico_0397 753074452949aaad4bdf2ecf380cb00d 426 Gene3D G3DSA:1.10.287.470 99 131 9.8E-14 T 14-10-2018 Amico_0397 753074452949aaad4bdf2ecf380cb00d 426 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 64 334 9.3E-13 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Amico_0397 753074452949aaad4bdf2ecf380cb00d 426 Gene3D G3DSA:2.40.50.100 65 98 9.8E-14 T 14-10-2018 Amico_0397 753074452949aaad4bdf2ecf380cb00d 426 SUPERFAMILY SSF111369 137 193 1.31E-5 T 14-10-2018 Amico_0397 753074452949aaad4bdf2ecf380cb00d 426 SUPERFAMILY SSF111369 57 124 6.41E-10 T 14-10-2018 Amico_0397 753074452949aaad4bdf2ecf380cb00d 426 SUPERFAMILY SSF111369 200 339 1.44E-8 T 14-10-2018 Amico_1437 d0af8b914e189f60aad348d04d374ea6 113 PRINTS PR00332 Histidine triad family signature 93 103 1.4E-16 T 14-10-2018 IPR001310 Histidine triad (HIT) protein Amico_1437 d0af8b914e189f60aad348d04d374ea6 113 PRINTS PR00332 Histidine triad family signature 6 22 1.4E-16 T 14-10-2018 IPR001310 Histidine triad (HIT) protein Amico_1437 d0af8b914e189f60aad348d04d374ea6 113 PRINTS PR00332 Histidine triad family signature 27 45 1.4E-16 T 14-10-2018 IPR001310 Histidine triad (HIT) protein Amico_1437 d0af8b914e189f60aad348d04d374ea6 113 ProSitePatterns PS00892 HIT domain signature. 86 104 - T 14-10-2018 IPR019808 Histidine triad, conserved site Amico_1437 d0af8b914e189f60aad348d04d374ea6 113 Pfam PF01230 HIT domain 15 107 1.2E-24 T 14-10-2018 IPR001310 Histidine triad (HIT) protein Amico_1437 d0af8b914e189f60aad348d04d374ea6 113 Gene3D G3DSA:3.30.428.10 1 112 3.0E-36 T 14-10-2018 IPR036265 HIT-like superfamily Amico_1437 d0af8b914e189f60aad348d04d374ea6 113 SUPERFAMILY SSF54197 3 112 3.4E-34 T 14-10-2018 IPR036265 HIT-like superfamily Amico_0968 53d36a077f07b51f1b42d7345c4ab8d8 304 Gene3D G3DSA:3.30.2350.10 1 239 3.9E-73 T 14-10-2018 Amico_0968 53d36a077f07b51f1b42d7345c4ab8d8 304 Pfam PF16198 tRNA pseudouridylate synthase B C-terminal domain 176 229 2.2E-11 T 14-10-2018 IPR032819 tRNA pseudouridylate synthase B, C-terminal Reactome: R-HSA-171319|Reactome: R-HSA-6790901 Amico_0968 53d36a077f07b51f1b42d7345c4ab8d8 304 Pfam PF01509 TruB family pseudouridylate synthase (N terminal domain) 27 175 2.0E-43 T 14-10-2018 IPR002501 Pseudouridine synthase II, N-terminal GO:0006396 Amico_0968 53d36a077f07b51f1b42d7345c4ab8d8 304 TIGRFAM TIGR00431 TruB: tRNA pseudouridine(55) synthase 2 214 8.1E-61 T 14-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0968 53d36a077f07b51f1b42d7345c4ab8d8 304 SUPERFAMILY SSF55120 2 234 1.67E-64 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0968 53d36a077f07b51f1b42d7345c4ab8d8 304 Hamap MF_01080 tRNA pseudouridine synthase B [truB]. 2 295 14.434 T 14-10-2018 IPR014780 tRNA pseudouridine synthase II, TruB GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0347 76cba73ce35ba6ab5a800dcfcc5d3dbd 657 SUPERFAMILY SSF52540 2 241 1.39E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0347 76cba73ce35ba6ab5a800dcfcc5d3dbd 657 ProSitePatterns PS00211 ABC transporters family signature. 162 176 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0347 76cba73ce35ba6ab5a800dcfcc5d3dbd 657 SUPERFAMILY SSF52540 304 529 1.27E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0347 76cba73ce35ba6ab5a800dcfcc5d3dbd 657 ProSitePatterns PS00211 ABC transporters family signature. 443 457 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0347 76cba73ce35ba6ab5a800dcfcc5d3dbd 657 Pfam PF00005 ABC transporter 18 190 1.9E-24 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0347 76cba73ce35ba6ab5a800dcfcc5d3dbd 657 Pfam PF12848 ABC transporter 229 311 1.6E-21 T 14-10-2018 IPR032781 ABC-transporter extension domain Amico_0347 76cba73ce35ba6ab5a800dcfcc5d3dbd 657 SMART SM00382 26 242 2.8E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0347 76cba73ce35ba6ab5a800dcfcc5d3dbd 657 SMART SM00382 349 525 3.5E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0347 76cba73ce35ba6ab5a800dcfcc5d3dbd 657 Gene3D G3DSA:3.40.50.300 3 284 3.7E-62 T 14-10-2018 Amico_0347 76cba73ce35ba6ab5a800dcfcc5d3dbd 657 Gene3D G3DSA:3.40.50.300 287 552 9.8E-67 T 14-10-2018 Amico_0347 76cba73ce35ba6ab5a800dcfcc5d3dbd 657 Pfam PF00005 ABC transporter 341 471 4.0E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0598 7b4c09db25b66d9532207eb4a5654aa6 149 Gene3D G3DSA:3.50.80.10 1 147 6.6E-59 T 14-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily Amico_0598 7b4c09db25b66d9532207eb4a5654aa6 149 Pfam PF02580 D-Tyr-tRNA(Tyr) deacylase 2 144 1.5E-57 T 14-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Amico_0598 7b4c09db25b66d9532207eb4a5654aa6 149 SUPERFAMILY SSF69500 1 145 7.19E-58 T 14-10-2018 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily Amico_0598 7b4c09db25b66d9532207eb4a5654aa6 149 Hamap MF_00518 D-aminoacyl-tRNA deacylase [dtd]. 1 145 36.355 T 14-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Amico_0598 7b4c09db25b66d9532207eb4a5654aa6 149 TIGRFAM TIGR00256 TIGR00256: D-tyrosyl-tRNA(Tyr) deacylase 1 145 1.2E-54 T 14-10-2018 IPR003732 D-aminoacyl-tRNA deacylase DTD GO:0002161|GO:0005737|GO:0051499 Amico_1694 aa52d752e816d1d04f2e0e9891adfb42 466 Gene3D G3DSA:3.40.50.1100 59 364 1.9E-40 T 14-10-2018 Amico_1694 aa52d752e816d1d04f2e0e9891adfb42 466 Gene3D G3DSA:3.40.50.1100 97 205 1.9E-40 T 14-10-2018 Amico_1694 aa52d752e816d1d04f2e0e9891adfb42 466 SUPERFAMILY SSF53686 43 365 8.77E-51 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Amico_1694 aa52d752e816d1d04f2e0e9891adfb42 466 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 57 364 4.4E-46 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Amico_1891 7e045994b9dc39b7679febf85a117113 1420 Pfam PF09989 CoA enzyme activase uncharacterised domain (DUF2229) 681 898 6.5E-65 T 14-10-2018 IPR018709 CoA enzyme activase, domain of unknown function DUF2229 Amico_1891 7e045994b9dc39b7679febf85a117113 1420 Gene3D G3DSA:3.30.420.40 423 566 7.3E-78 T 14-10-2018 Amico_1891 7e045994b9dc39b7679febf85a117113 1420 Gene3D G3DSA:3.30.420.40 8 259 2.0E-66 T 14-10-2018 Amico_1891 7e045994b9dc39b7679febf85a117113 1420 SUPERFAMILY SSF53067 8 259 2.27E-41 T 14-10-2018 Amico_1891 7e045994b9dc39b7679febf85a117113 1420 SUPERFAMILY SSF53067 324 583 8.53E-43 T 14-10-2018 Amico_1891 7e045994b9dc39b7679febf85a117113 1420 Gene3D G3DSA:3.30.420.40 98 245 2.0E-66 T 14-10-2018 Amico_1891 7e045994b9dc39b7679febf85a117113 1420 Pfam PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component 916 1120 1.9E-18 T 14-10-2018 IPR010327 FldB/FldC dehydratase alpha/beta subunit Amico_1891 7e045994b9dc39b7679febf85a117113 1420 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 8 259 2.6E-28 T 14-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Amico_1891 7e045994b9dc39b7679febf85a117113 1420 Pfam PF01869 BadF/BadG/BcrA/BcrD ATPase family 325 583 2.6E-36 T 14-10-2018 IPR002731 ATPase, BadF/BadG/BcrA/BcrD type Reactome: R-HSA-446210 Amico_1891 7e045994b9dc39b7679febf85a117113 1420 Gene3D G3DSA:3.30.420.40 325 583 7.3E-78 T 14-10-2018 Amico_0002 0646e37b4967b4c4aa4ceb736710848e 383 Pfam PF02768 DNA polymerase III beta subunit, C-terminal domain 254 368 1.7E-25 T 14-10-2018 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 Amico_0002 0646e37b4967b4c4aa4ceb736710848e 383 PIRSF PIRSF000804 1 371 9.6E-81 T 14-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Amico_0002 0646e37b4967b4c4aa4ceb736710848e 383 SUPERFAMILY SSF55979 250 370 3.89E-26 T 14-10-2018 Amico_0002 0646e37b4967b4c4aa4ceb736710848e 383 Gene3D G3DSA:3.70.10.10 138 368 4.1E-84 T 14-10-2018 Amico_0002 0646e37b4967b4c4aa4ceb736710848e 383 SUPERFAMILY SSF55979 1 119 2.67E-16 T 14-10-2018 Amico_0002 0646e37b4967b4c4aa4ceb736710848e 383 Gene3D G3DSA:3.10.150.10 1 245 4.1E-84 T 14-10-2018 Amico_0002 0646e37b4967b4c4aa4ceb736710848e 383 SMART SM00480 17 366 1.1E-54 T 14-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Amico_0002 0646e37b4967b4c4aa4ceb736710848e 383 SUPERFAMILY SSF55979 131 249 3.38E-12 T 14-10-2018 Amico_0002 0646e37b4967b4c4aa4ceb736710848e 383 TIGRFAM TIGR00663 dnan: DNA polymerase III, beta subunit 1 370 1.1E-64 T 14-10-2018 IPR001001 DNA polymerase III, beta sliding clamp GO:0003677|GO:0006260|GO:0009360 Amico_0002 0646e37b4967b4c4aa4ceb736710848e 383 Pfam PF02767 DNA polymerase III beta subunit, central domain 130 246 2.5E-11 T 14-10-2018 IPR022637 DNA polymerase III, beta sliding clamp, central GO:0003887|GO:0006260|GO:0008408|GO:0009360 Amico_0002 0646e37b4967b4c4aa4ceb736710848e 383 Pfam PF00712 DNA polymerase III beta subunit, N-terminal domain 1 119 2.0E-14 T 14-10-2018 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal GO:0003677|GO:0003887|GO:0006260|GO:0008408|GO:0009360 Amico_0004 612e0826110af9e48247904504bc8b1f 632 TIGRFAM TIGR00136 gidA: tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA 6 620 5.5E-242 T 14-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 Amico_0004 612e0826110af9e48247904504bc8b1f 632 Pfam PF13932 GidA associated domain 399 613 2.7E-72 T 14-10-2018 IPR026904 GidA associated domain 3 Reactome: R-HSA-6787450 Amico_0004 612e0826110af9e48247904504bc8b1f 632 Hamap MF_00129 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG [mnmG]. 4 622 38.273 T 14-10-2018 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG GO:0002098 Reactome: R-HSA-6787450 Amico_0004 612e0826110af9e48247904504bc8b1f 632 Gene3D G3DSA:3.50.50.60 1 266 1.2E-74 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_0004 612e0826110af9e48247904504bc8b1f 632 Gene3D G3DSA:3.50.50.60 320 456 4.8E-55 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_0004 612e0826110af9e48247904504bc8b1f 632 Pfam PF01134 Glucose inhibited division protein A 7 395 1.8E-142 T 14-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Amico_0004 612e0826110af9e48247904504bc8b1f 632 ProSitePatterns PS01281 Glucose inhibited division protein A family signature 2. 366 389 - T 14-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Amico_0004 612e0826110af9e48247904504bc8b1f 632 SUPERFAMILY SSF51905 4 259 5.7E-36 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_0004 612e0826110af9e48247904504bc8b1f 632 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 150 159 5.5E-6 T 14-10-2018 Amico_0004 612e0826110af9e48247904504bc8b1f 632 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 7 29 5.5E-6 T 14-10-2018 Amico_0004 612e0826110af9e48247904504bc8b1f 632 ProSitePatterns PS01280 Glucose inhibited division protein A family signature 1. 271 285 - T 14-10-2018 IPR020595 MnmG-related, conserved site Reactome: R-HSA-6787450 Amico_0004 612e0826110af9e48247904504bc8b1f 632 Gene3D G3DSA:1.10.150.570 567 619 1.0E-23 T 14-10-2018 Amico_0004 612e0826110af9e48247904504bc8b1f 632 SMART SM01228 544 615 5.9E-37 T 14-10-2018 Amico_0004 612e0826110af9e48247904504bc8b1f 632 Gene3D G3DSA:1.10.10.1800 457 548 7.8E-18 T 14-10-2018 Amico_1607 0f22e58aebbffa3152b931aba3499a1e 261 SUPERFAMILY SSF56219 2 258 2.88E-68 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Amico_1607 0f22e58aebbffa3152b931aba3499a1e 261 TIGRFAM TIGR00195 exoDNase_III: exodeoxyribonuclease III 2 254 6.6E-86 T 14-10-2018 Amico_1607 0f22e58aebbffa3152b931aba3499a1e 261 TIGRFAM TIGR00633 xth: exodeoxyribonuclease III (xth) 2 256 7.2E-75 T 14-10-2018 IPR004808 AP endonuclease 1 GO:0004518|GO:0006281 Amico_1607 0f22e58aebbffa3152b931aba3499a1e 261 Gene3D G3DSA:3.60.10.10 1 259 5.4E-71 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Amico_1607 0f22e58aebbffa3152b931aba3499a1e 261 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 5 250 1.3E-18 T 14-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Amico_1807 ed1b042464c20fa21d51759d95e201e6 298 Pfam PF01418 Helix-turn-helix domain, rpiR family 20 88 3.3E-10 T 14-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Amico_1807 ed1b042464c20fa21d51759d95e201e6 298 Gene3D G3DSA:1.10.10.10 14 92 5.7E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1807 ed1b042464c20fa21d51759d95e201e6 298 Pfam PF01380 SIS domain 144 269 5.8E-13 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Amico_1807 ed1b042464c20fa21d51759d95e201e6 298 SUPERFAMILY SSF46689 18 94 2.69E-14 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Amico_1807 ed1b042464c20fa21d51759d95e201e6 298 Gene3D G3DSA:3.40.50.10490 111 293 1.4E-26 T 14-10-2018 Amico_1807 ed1b042464c20fa21d51759d95e201e6 298 SUPERFAMILY SSF53697 115 276 2.22E-19 T 14-10-2018 Amico_1148 8c2d453f3960b15fe1df6c9ddf0fe129 300 Gene3D G3DSA:3.40.50.150 7 247 6.7E-36 T 14-10-2018 Amico_1148 8c2d453f3960b15fe1df6c9ddf0fe129 300 SUPERFAMILY SSF53335 5 260 7.48E-46 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_1148 8c2d453f3960b15fe1df6c9ddf0fe129 300 Gene3D G3DSA:1.10.1020.10 64 163 6.7E-36 T 14-10-2018 IPR023095 Adenine-specific methyltransferase, domain 2 GO:0009007 Amico_1148 8c2d453f3960b15fe1df6c9ddf0fe129 300 PIRSF PIRSF000398 2 274 1.5E-53 T 14-10-2018 IPR012263 Adenine modification methylase, M.EcoRV-type GO:0009007|GO:0032775 Amico_1148 8c2d453f3960b15fe1df6c9ddf0fe129 300 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 190 202 5.9E-10 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Amico_1148 8c2d453f3960b15fe1df6c9ddf0fe129 300 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 57 70 5.9E-10 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Amico_1148 8c2d453f3960b15fe1df6c9ddf0fe129 300 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 34 48 5.9E-10 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Amico_1148 8c2d453f3960b15fe1df6c9ddf0fe129 300 PRINTS PR00505 D12 class N6 adenine-specific DNA methyltransferase signature 9 25 5.9E-10 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Amico_1148 8c2d453f3960b15fe1df6c9ddf0fe129 300 Pfam PF02086 D12 class N6 adenine-specific DNA methyltransferase 9 248 7.0E-21 T 14-10-2018 IPR012327 D12 class N6 adenine-specific DNA methyltransferase GO:0009007|GO:0032775 Amico_0069 b125817f065a0106689f9f6ac80c341a 520 SUPERFAMILY SSF53850 2 248 7.24E-55 T 14-10-2018 Amico_0069 b125817f065a0106689f9f6ac80c341a 520 Gene3D G3DSA:3.40.190.10 117 209 7.0E-53 T 14-10-2018 Amico_0069 b125817f065a0106689f9f6ac80c341a 520 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 55 68 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site Amico_0069 b125817f065a0106689f9f6ac80c341a 520 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 315 497 1.6E-21 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0069 b125817f065a0106689f9f6ac80c341a 520 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 294 391 2.8E-29 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Amico_0069 b125817f065a0106689f9f6ac80c341a 520 Gene3D G3DSA:1.10.3720.10 286 498 6.8E-57 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0069 b125817f065a0106689f9f6ac80c341a 520 SUPERFAMILY SSF161098 296 482 4.97E-45 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0069 b125817f065a0106689f9f6ac80c341a 520 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 39 246 2.8E-52 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_0069 b125817f065a0106689f9f6ac80c341a 520 Gene3D G3DSA:3.40.190.10 41 246 7.0E-53 T 14-10-2018 Amico_0069 b125817f065a0106689f9f6ac80c341a 520 SMART SM00062 29 250 7.4E-41 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 Gene3D G3DSA:3.10.350.10 165 227 1.9E-17 T 14-10-2018 IPR036779 LysM domain superfamily Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 Gene3D G3DSA:3.10.350.10 242 303 5.5E-13 T 14-10-2018 IPR036779 LysM domain superfamily Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 SUPERFAMILY SSF51261 256 502 5.75E-63 T 14-10-2018 IPR011055 Duplicated hybrid motif Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 Gene3D G3DSA:2.70.70.10 358 503 9.4E-56 T 14-10-2018 IPR011055 Duplicated hybrid motif Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 SUPERFAMILY SSF54106 177 221 2.35E-11 T 14-10-2018 Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 Pfam PF01551 Peptidase family M23 404 498 4.3E-37 T 14-10-2018 IPR016047 Peptidase M23 Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 SMART SM00257 255 299 1.6E-9 T 14-10-2018 IPR018392 LysM domain Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 SMART SM00257 305 350 3.4E-8 T 14-10-2018 IPR018392 LysM domain Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 SMART SM00257 177 221 5.4E-15 T 14-10-2018 IPR018392 LysM domain Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 Pfam PF01476 LysM domain 178 221 9.1E-15 T 14-10-2018 IPR018392 LysM domain Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 Pfam PF01476 LysM domain 256 299 1.6E-10 T 14-10-2018 IPR018392 LysM domain Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 Pfam PF01476 LysM domain 306 350 1.9E-7 T 14-10-2018 IPR018392 LysM domain Amico_1475 2c4bd0454c921a490c1d54d7c8dd1896 503 Gene3D G3DSA:3.10.350.10 304 350 1.1E-9 T 14-10-2018 IPR036779 LysM domain superfamily Amico_1073 b0177f368bca9608c1f5e0c3f5656ceb 166 SUPERFAMILY SSF52374 5 159 3.07E-46 T 14-10-2018 Amico_1073 b0177f368bca9608c1f5e0c3f5656ceb 166 Hamap MF_00151 Phosphopantetheine adenylyltransferase [coaD]. 5 161 35.064 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Amico_1073 b0177f368bca9608c1f5e0c3f5656ceb 166 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 5 23 1.3E-48 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Amico_1073 b0177f368bca9608c1f5e0c3f5656ceb 166 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 23 44 1.3E-48 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Amico_1073 b0177f368bca9608c1f5e0c3f5656ceb 166 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 88 104 1.3E-48 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Amico_1073 b0177f368bca9608c1f5e0c3f5656ceb 166 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 115 137 1.3E-48 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Amico_1073 b0177f368bca9608c1f5e0c3f5656ceb 166 PRINTS PR01020 Lipopolysaccharide core biosynthesis protein signature 52 76 1.3E-48 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Amico_1073 b0177f368bca9608c1f5e0c3f5656ceb 166 Gene3D G3DSA:3.40.50.620 1 162 9.8E-57 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1073 b0177f368bca9608c1f5e0c3f5656ceb 166 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 6 66 6.1E-18 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Amico_1073 b0177f368bca9608c1f5e0c3f5656ceb 166 Pfam PF01467 Cytidylyltransferase-like 8 136 1.0E-19 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Amico_1073 b0177f368bca9608c1f5e0c3f5656ceb 166 TIGRFAM TIGR01510 coaD_prev_kdtB: pantetheine-phosphate adenylyltransferase 6 160 2.9E-60 T 14-10-2018 IPR001980 Phosphopantetheine adenylyltransferase GO:0004595|GO:0015937 KEGG: 00770+2.7.7.3|MetaCyc: PWY-7851 Amico_1073 b0177f368bca9608c1f5e0c3f5656ceb 166 ProDom PD016147 LIGASE LYASE CITRATE PRO-3S-LYASE SYNTHETASE TRANSFERASE CYTIDYLTRANSFERASE-RELATED:CITRATE ACETATE:SH-CITRATE CITC PLASMID 14 78 2.0E-4 T 14-10-2018 Amico_0685 542d2e2e8c02705223435dd96efbda23 446 Pfam PF13481 AAA domain 68 213 2.8E-15 T 14-10-2018 Amico_0685 542d2e2e8c02705223435dd96efbda23 446 Gene3D G3DSA:3.30.230.10 281 446 5.7E-17 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Amico_0685 542d2e2e8c02705223435dd96efbda23 446 SUPERFAMILY SSF52540 39 265 3.58E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0685 542d2e2e8c02705223435dd96efbda23 446 SMART SM00382 83 235 3.8E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0685 542d2e2e8c02705223435dd96efbda23 446 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 339 436 1.3E-7 T 14-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Amico_0685 542d2e2e8c02705223435dd96efbda23 446 PRINTS PR01874 DNA repair protein radA signature 239 265 3.5E-77 T 14-10-2018 Amico_0685 542d2e2e8c02705223435dd96efbda23 446 PRINTS PR01874 DNA repair protein radA signature 75 103 3.5E-77 T 14-10-2018 Amico_0685 542d2e2e8c02705223435dd96efbda23 446 PRINTS PR01874 DNA repair protein radA signature 313 336 3.5E-77 T 14-10-2018 Amico_0685 542d2e2e8c02705223435dd96efbda23 446 PRINTS PR01874 DNA repair protein radA signature 11 35 3.5E-77 T 14-10-2018 Amico_0685 542d2e2e8c02705223435dd96efbda23 446 PRINTS PR01874 DNA repair protein radA signature 117 134 3.5E-77 T 14-10-2018 Amico_0685 542d2e2e8c02705223435dd96efbda23 446 PRINTS PR01874 DNA repair protein radA signature 204 232 3.5E-77 T 14-10-2018 Amico_0685 542d2e2e8c02705223435dd96efbda23 446 PRINTS PR01874 DNA repair protein radA signature 165 189 3.5E-77 T 14-10-2018 Amico_0685 542d2e2e8c02705223435dd96efbda23 446 SUPERFAMILY SSF54211 246 441 2.5E-30 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0685 542d2e2e8c02705223435dd96efbda23 446 Gene3D G3DSA:3.40.50.300 59 270 3.2E-39 T 14-10-2018 Amico_0685 542d2e2e8c02705223435dd96efbda23 446 Hamap MF_01498 DNA repair protein RadA [radA]. 22 445 38.313 T 14-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Amico_0685 542d2e2e8c02705223435dd96efbda23 446 TIGRFAM TIGR00416 sms: DNA repair protein RadA 1 441 3.1E-140 T 14-10-2018 IPR004504 DNA repair protein RadA GO:0003684|GO:0005524|GO:0006281 Amico_1503 ebaecb34b97b02a1c2d12293aac6222b 152 Pfam PF07977 FabA-like domain 11 133 1.2E-32 T 14-10-2018 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Amico_1503 ebaecb34b97b02a1c2d12293aac6222b 152 Gene3D G3DSA:3.10.129.10 1 149 1.1E-55 T 14-10-2018 Amico_1503 ebaecb34b97b02a1c2d12293aac6222b 152 SUPERFAMILY SSF54637 4 139 9.86E-44 T 14-10-2018 IPR029069 HotDog domain superfamily Amico_1503 ebaecb34b97b02a1c2d12293aac6222b 152 TIGRFAM TIGR01750 fabZ: beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ 2 136 2.7E-54 T 14-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Amico_1503 ebaecb34b97b02a1c2d12293aac6222b 152 Hamap MF_00406 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ [fabZ]. 2 140 33.237 T 14-10-2018 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ GO:0005737|GO:0006633|GO:0016836 KEGG: 00061+4.2.1.59|KEGG: 00780+4.2.1.59|MetaCyc: PWY-5971|MetaCyc: PWY-5973|MetaCyc: PWY-5989|MetaCyc: PWY-5994|MetaCyc: PWY-6113|MetaCyc: PWY-6282|MetaCyc: PWY-6519|MetaCyc: PWY-7388|MetaCyc: PWY-7663|MetaCyc: PWY-7664|MetaCyc: PWY-7858|MetaCyc: PWYG-321 Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 Pfam PF02824 TGS domain 404 463 9.2E-22 T 14-10-2018 IPR004095 TGS KEGG: 00970+6.1.1.3 Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 Pfam PF13328 HD domain 44 193 7.1E-48 T 14-10-2018 IPR003607 HD/PDEase domain Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 SMART SM00954 253 363 2.0E-63 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 Pfam PF04607 Region found in RelA / SpoT proteins 253 363 3.7E-37 T 14-10-2018 IPR007685 RelA/SpoT GO:0015969 Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 Gene3D G3DSA:1.10.3210.10 16 208 1.6E-78 T 14-10-2018 Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 SMART SM00471 59 171 5.4E-11 T 14-10-2018 IPR003607 HD/PDEase domain Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 SUPERFAMILY SSF55021 657 733 2.83E-7 T 14-10-2018 Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 SUPERFAMILY SSF81271 391 464 2.13E-23 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 Pfam PF13291 ACT domain 657 733 1.8E-18 T 14-10-2018 IPR002912 ACT domain Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 Gene3D G3DSA:3.30.460.10 211 343 4.6E-51 T 14-10-2018 Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 SUPERFAMILY SSF109604 21 207 9.31E-71 T 14-10-2018 Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 Gene3D G3DSA:3.10.20.30 397 470 1.3E-31 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 SUPERFAMILY SSF81301 210 381 7.03E-62 T 14-10-2018 Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 Gene3D G3DSA:3.30.70.260 657 734 1.1E-14 T 14-10-2018 Amico_0597 936d689ca24e6fd0c85f8a87c351adb3 734 TIGRFAM TIGR00691 spoT_relA: RelA/SpoT family protein 44 733 9.6E-230 T 14-10-2018 IPR004811 RelA/SpoT family GO:0015969 Amico_1827 c0d3f04ef72cfd719e075fbb8a929ce0 225 SMART SM01133 5 221 6.8E-35 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 Amico_1827 c0d3f04ef72cfd719e075fbb8a929ce0 225 PIRSF PIRSF001357 1 225 6.8E-45 T 14-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 Amico_1827 c0d3f04ef72cfd719e075fbb8a929ce0 225 SUPERFAMILY SSF51569 3 222 2.2E-47 T 14-10-2018 Amico_1827 c0d3f04ef72cfd719e075fbb8a929ce0 225 TIGRFAM TIGR00126 deoC: deoxyribose-phosphate aldolase 6 218 3.9E-40 T 14-10-2018 IPR011343 Deoxyribose-phosphate aldolase GO:0004139|GO:0005737|GO:0009264 KEGG: 00030+4.1.2.4|MetaCyc: PWY-7180|Reactome: R-HSA-6798695|Reactome: R-HSA-71336 Amico_1827 c0d3f04ef72cfd719e075fbb8a929ce0 225 Gene3D G3DSA:3.20.20.70 1 225 6.4E-56 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0928 543a9bf838b7d5a8db201f2091b0a1fa 501 Gene3D G3DSA:3.20.20.70 130 498 1.0E-23 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0928 543a9bf838b7d5a8db201f2091b0a1fa 501 Pfam PF01645 Conserved region in glutamate synthase 274 390 1.7E-6 T 14-10-2018 IPR002932 Glutamate synthase domain GO:0006537|GO:0015930|GO:0016638|GO:0055114 Amico_0928 543a9bf838b7d5a8db201f2091b0a1fa 501 SUPERFAMILY SSF51395 111 487 2.2E-21 T 14-10-2018 Amico_0568 96379922b4ac14798c6d67d32c4f2086 136 Gene3D G3DSA:3.30.360.110 1 61 1.2E-18 T 14-10-2018 Amico_0568 96379922b4ac14798c6d67d32c4f2086 136 Hamap MF_00464 S-adenosylmethionine decarboxylase proenzyme [speH]. 1 116 26.727 T 14-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Amico_0568 96379922b4ac14798c6d67d32c4f2086 136 Gene3D G3DSA:3.30.160.750 62 123 5.9E-20 T 14-10-2018 Amico_0568 96379922b4ac14798c6d67d32c4f2086 136 SUPERFAMILY SSF56276 5 113 6.67E-34 T 14-10-2018 IPR016067 S-adenosylmethionine decarboxylase, core GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834|Reactome: R-HSA-351202 Amico_0568 96379922b4ac14798c6d67d32c4f2086 136 Pfam PF02675 S-adenosylmethionine decarboxylase 7 112 2.5E-33 T 14-10-2018 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Amico_0568 96379922b4ac14798c6d67d32c4f2086 136 TIGRFAM TIGR03330 SAM_DCase_Bsu: S-adenosylmethionine decarboxylase proenzyme 5 112 8.1E-38 T 14-10-2018 IPR017716 S-adenosylmethionine decarboxylase proenzyme GO:0004014|GO:0008295 KEGG: 00270+4.1.1.50|KEGG: 00330+4.1.1.50|MetaCyc: PWY-6834 Amico_1388 128a5d34d75c944427071f8d342ea0a8 648 SUPERFAMILY SSF52518 9 286 2.49E-68 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1388 128a5d34d75c944427071f8d342ea0a8 648 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 27 288 1.9E-39 T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Amico_1388 128a5d34d75c944427071f8d342ea0a8 648 SMART SM00861 328 498 2.7E-21 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Amico_1388 128a5d34d75c944427071f8d342ea0a8 648 Pfam PF02780 Transketolase, C-terminal domain 517 636 7.2E-13 T 14-10-2018 IPR033248 Transketolase, C-terminal domain Amico_1388 128a5d34d75c944427071f8d342ea0a8 648 ProSitePatterns PS00801 Transketolase signature 1. 32 52 - T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Amico_1388 128a5d34d75c944427071f8d342ea0a8 648 Gene3D G3DSA:3.40.50.920 517 648 6.7E-20 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1388 128a5d34d75c944427071f8d342ea0a8 648 SUPERFAMILY SSF52922 514 644 9.29E-17 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1388 128a5d34d75c944427071f8d342ea0a8 648 Gene3D G3DSA:3.40.50.970 312 504 1.3E-44 T 14-10-2018 Amico_1388 128a5d34d75c944427071f8d342ea0a8 648 Pfam PF02779 Transketolase, pyrimidine binding domain 353 497 5.4E-17 T 14-10-2018 IPR005475 Transketolase-like, pyrimidine-binding domain Amico_1388 128a5d34d75c944427071f8d342ea0a8 648 SUPERFAMILY SSF52518 321 500 3.04E-33 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1388 128a5d34d75c944427071f8d342ea0a8 648 Gene3D G3DSA:3.40.50.970 20 299 5.5E-79 T 14-10-2018 Amico_1766 e0d3aabae5037c652e6af1ebf894c9fd 353 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 23 336 8.3E-41 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Amico_1766 e0d3aabae5037c652e6af1ebf894c9fd 353 PIRSF PIRSF006278 7 352 2.3E-69 T 14-10-2018 IPR027278 1-aminocyclopropane-1-carboxylate deaminase/D-cysteine desulfhydrase Amico_1766 e0d3aabae5037c652e6af1ebf894c9fd 353 Gene3D G3DSA:3.40.50.1100 20 340 5.0E-99 T 14-10-2018 Amico_1766 e0d3aabae5037c652e6af1ebf894c9fd 353 SUPERFAMILY SSF53686 17 344 1.27E-65 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Amico_1766 e0d3aabae5037c652e6af1ebf894c9fd 353 Gene3D G3DSA:3.40.50.1100 59 172 5.0E-99 T 14-10-2018 Amico_1853 7c8d096756a569c093b352434ee6c161 229 Pfam PF02527 rRNA small subunit methyltransferase G 19 175 1.5E-38 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Amico_1853 7c8d096756a569c093b352434ee6c161 229 Hamap MF_00074 Ribosomal RNA small subunit methyltransferase G [rsmG]. 10 185 22.175 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Amico_1853 7c8d096756a569c093b352434ee6c161 229 Gene3D G3DSA:3.40.50.150 2 227 4.9E-58 T 14-10-2018 Amico_1853 7c8d096756a569c093b352434ee6c161 229 TIGRFAM TIGR00138 rsmG_gidB: 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG 22 176 7.7E-35 T 14-10-2018 IPR003682 rRNA small subunit methyltransferase G GO:0005737|GO:0006364|GO:0008649 Amico_1853 7c8d096756a569c093b352434ee6c161 229 SUPERFAMILY SSF53335 13 226 1.07E-27 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0590 dbb7589fcf729152e5ed956ea60ffeb9 209 Hamap MF_01131 Redox-sensing transcriptional repressor Rex [rex]. 1 207 31.924 T 14-10-2018 IPR022876 Redox-sensing transcriptional repressor Rex GO:0005737|GO:0045892|GO:0051775 Amico_0590 dbb7589fcf729152e5ed956ea60ffeb9 209 SUPERFAMILY SSF46785 6 75 9.25E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0590 dbb7589fcf729152e5ed956ea60ffeb9 209 SUPERFAMILY SSF51735 79 204 3.23E-26 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0590 dbb7589fcf729152e5ed956ea60ffeb9 209 Pfam PF06971 Putative DNA-binding protein N-terminus 2 50 7.6E-19 T 14-10-2018 IPR009718 Rex DNA-binding, C-terminal domain GO:0005737|GO:0045892|GO:0051775 Amico_0590 dbb7589fcf729152e5ed956ea60ffeb9 209 Gene3D G3DSA:3.40.50.720 74 209 1.1E-42 T 14-10-2018 Amico_0590 dbb7589fcf729152e5ed956ea60ffeb9 209 Gene3D G3DSA:1.10.10.10 1 72 6.4E-28 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0590 dbb7589fcf729152e5ed956ea60ffeb9 209 Pfam PF02629 CoA binding domain 80 176 6.7E-23 T 14-10-2018 IPR003781 CoA-binding GO:0048037 Amico_0590 dbb7589fcf729152e5ed956ea60ffeb9 209 SMART SM00881 77 178 7.2E-16 T 14-10-2018 IPR003781 CoA-binding GO:0048037 Amico_1836 9983284d0d8ea75a0501c5223cac9296 264 SUPERFAMILY SSF55781 66 254 1.63E-38 T 14-10-2018 Amico_1836 9983284d0d8ea75a0501c5223cac9296 264 Gene3D G3DSA:1.10.10.10 8 79 1.2E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1836 9983284d0d8ea75a0501c5223cac9296 264 Pfam PF01614 Bacterial transcriptional regulator 125 247 9.8E-18 T 14-10-2018 IPR014757 Transcription regulator IclR, C-terminal Amico_1836 9983284d0d8ea75a0501c5223cac9296 264 Gene3D G3DSA:3.30.450.40 80 247 1.5E-39 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_1836 9983284d0d8ea75a0501c5223cac9296 264 SMART SM00346 8 98 3.9E-25 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_1836 9983284d0d8ea75a0501c5223cac9296 264 Pfam PF09339 IclR helix-turn-helix domain 10 57 7.9E-17 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_1836 9983284d0d8ea75a0501c5223cac9296 264 SUPERFAMILY SSF46785 9 80 2.4E-18 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1591 96491b4ea080d2101bb013344c78e385 334 Gene3D G3DSA:3.40.50.970 2 334 3.9E-132 T 14-10-2018 Amico_1591 96491b4ea080d2101bb013344c78e385 334 SUPERFAMILY SSF52518 15 334 2.07E-104 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1591 96491b4ea080d2101bb013344c78e385 334 Pfam PF00676 Dehydrogenase E1 component 28 325 4.9E-96 T 14-10-2018 IPR001017 Dehydrogenase, E1 component GO:0016624 Reactome: R-HSA-389661 Amico_0491 75ba066141712102109b51ce53d3eb83 342 Gene3D G3DSA:3.30.360.10 155 316 2.8E-96 T 14-10-2018 Amico_0491 75ba066141712102109b51ce53d3eb83 342 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 200 222 - T 14-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Amico_0491 75ba066141712102109b51ce53d3eb83 342 PIRSF PIRSF036497 1 340 2.7E-92 T 14-10-2018 IPR022697 Homoserine dehydrogenase lacking ACT domain GO:0004412 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Amico_0491 75ba066141712102109b51ce53d3eb83 342 SUPERFAMILY SSF51735 2 176 4.19E-19 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0491 75ba066141712102109b51ce53d3eb83 342 Gene3D G3DSA:3.40.50.720 6 323 2.8E-96 T 14-10-2018 Amico_0491 75ba066141712102109b51ce53d3eb83 342 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 10 147 2.1E-7 T 14-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Amico_0491 75ba066141712102109b51ce53d3eb83 342 SUPERFAMILY SSF55347 155 319 2.35E-43 T 14-10-2018 Amico_0491 75ba066141712102109b51ce53d3eb83 342 Pfam PF00742 Homoserine dehydrogenase 155 332 1.6E-52 T 14-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Amico_1385 7726ed3a764b751981bea77724cfec2d 368 Pfam PF01321 Creatinase/Prolidase N-terminal domain 9 137 8.2E-18 T 14-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 Amico_1385 7726ed3a764b751981bea77724cfec2d 368 Pfam PF00557 Metallopeptidase family M24 147 351 2.4E-60 T 14-10-2018 IPR000994 Peptidase M24 Amico_1385 7726ed3a764b751981bea77724cfec2d 368 Gene3D G3DSA:3.90.230.10 139 363 3.7E-72 T 14-10-2018 Amico_1385 7726ed3a764b751981bea77724cfec2d 368 SUPERFAMILY SSF53092 7 137 9.77E-19 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Amico_1385 7726ed3a764b751981bea77724cfec2d 368 PRINTS PR00599 Methionine aminopeptidase-1 signature 199 212 6.7E-5 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Amico_1385 7726ed3a764b751981bea77724cfec2d 368 PRINTS PR00599 Methionine aminopeptidase-1 signature 221 237 6.7E-5 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Amico_1385 7726ed3a764b751981bea77724cfec2d 368 PRINTS PR00599 Methionine aminopeptidase-1 signature 319 331 6.7E-5 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Amico_1385 7726ed3a764b751981bea77724cfec2d 368 Gene3D G3DSA:3.40.350.10 7 137 1.5E-25 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Amico_1385 7726ed3a764b751981bea77724cfec2d 368 ProSitePatterns PS00491 Aminopeptidase P and proline dipeptidase signature. 297 309 - T 14-10-2018 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site Amico_1385 7726ed3a764b751981bea77724cfec2d 368 SUPERFAMILY SSF55920 140 360 1.96E-67 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like Amico_0084 4b17371efcd27e8e347d3ec0df6b986d 491 TIGRFAM TIGR00813 sss: transporter, solute:sodium symporter (SSS) family 42 440 2.0E-83 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Amico_0084 4b17371efcd27e8e347d3ec0df6b986d 491 TIGRFAM TIGR02119 panF: sodium/pantothenate symporter 6 480 3.9E-199 T 14-10-2018 IPR011849 Sodium/pantothenate symporter GO:0015081|GO:0015233|GO:0015887|GO:0016021|GO:0036376 Amico_0084 4b17371efcd27e8e347d3ec0df6b986d 491 Gene3D G3DSA:1.20.1730.10 31 490 4.0E-80 T 14-10-2018 IPR038377 Sodium/glucose symporter superfamily Amico_0084 4b17371efcd27e8e347d3ec0df6b986d 491 ProSitePatterns PS00456 Sodium:solute symporter family signature 1. 161 186 - T 14-10-2018 IPR018212 Sodium/solute symporter, conserved site Amico_0084 4b17371efcd27e8e347d3ec0df6b986d 491 Pfam PF00474 Sodium:solute symporter family 42 440 5.7E-95 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Amico_0338 0c8792ade633d9a9c7558bfb4f4bd0e9 129 Gene3D G3DSA:3.30.420.270 58 124 2.7E-11 T 14-10-2018 Amico_0338 0c8792ade633d9a9c7558bfb4f4bd0e9 129 Pfam PF02472 Biopolymer transport protein ExbD/TolR 8 127 1.2E-24 T 14-10-2018 IPR003400 Biopolymer transport protein ExbD/TolR GO:0022857|GO:0055085 Amico_1620 001220550a6ea07dac763f641231ffdb 621 SUPERFAMILY SSF52540 2 207 1.57E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1620 001220550a6ea07dac763f641231ffdb 621 Pfam PF00009 Elongation factor Tu GTP binding domain 6 198 3.3E-57 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1620 001220550a6ea07dac763f641231ffdb 621 PRINTS PR00315 GTP-binding elongation factor signature 73 83 5.8E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1620 001220550a6ea07dac763f641231ffdb 621 PRINTS PR00315 GTP-binding elongation factor signature 125 134 5.8E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1620 001220550a6ea07dac763f641231ffdb 621 PRINTS PR00315 GTP-binding elongation factor signature 9 22 5.8E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1620 001220550a6ea07dac763f641231ffdb 621 PRINTS PR00315 GTP-binding elongation factor signature 53 61 5.8E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1620 001220550a6ea07dac763f641231ffdb 621 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 6 154 1.4E-22 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_1620 001220550a6ea07dac763f641231ffdb 621 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 46 61 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site Amico_1620 001220550a6ea07dac763f641231ffdb 621 TIGRFAM TIGR01394 TypA_BipA: GTP-binding protein TypA/BipA 7 615 1.2E-248 T 14-10-2018 IPR006298 GTP-binding protein TypA GO:0005525 Amico_1620 001220550a6ea07dac763f641231ffdb 621 SUPERFAMILY SSF54980 320 404 3.41E-11 T 14-10-2018 IPR035647 EF-G domain III/V-like Amico_1620 001220550a6ea07dac763f641231ffdb 621 Gene3D G3DSA:3.30.70.870 323 606 1.2E-123 T 14-10-2018 Amico_1620 001220550a6ea07dac763f641231ffdb 621 Gene3D G3DSA:3.30.70.240 406 498 1.2E-123 T 14-10-2018 Amico_1620 001220550a6ea07dac763f641231ffdb 621 SMART SM00838 412 500 9.6E-4 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Amico_1620 001220550a6ea07dac763f641231ffdb 621 SUPERFAMILY SSF54980 415 529 8.15E-28 T 14-10-2018 IPR035647 EF-G domain III/V-like Amico_1620 001220550a6ea07dac763f641231ffdb 621 Gene3D G3DSA:2.40.30.10 202 315 4.6E-25 T 14-10-2018 Amico_1620 001220550a6ea07dac763f641231ffdb 621 Pfam PF00679 Elongation factor G C-terminus 414 494 6.3E-22 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Amico_1620 001220550a6ea07dac763f641231ffdb 621 Gene3D G3DSA:3.40.50.300 3 201 2.8E-62 T 14-10-2018 Amico_1620 001220550a6ea07dac763f641231ffdb 621 SUPERFAMILY SSF50447 154 308 2.37E-24 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Amico_1620 001220550a6ea07dac763f641231ffdb 621 Gene3D G3DSA:2.40.50.250 499 615 1.2E-123 T 14-10-2018 Amico_0171 6fd7226dfe21a8ea37aff6ed7ca6f435 1759 SUPERFAMILY SSF48239 1320 1566 3.45E-29 T 14-10-2018 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid Amico_0171 6fd7226dfe21a8ea37aff6ed7ca6f435 1759 Gene3D G3DSA:1.50.10.20 1311 1568 3.2E-16 T 14-10-2018 Amico_0171 6fd7226dfe21a8ea37aff6ed7ca6f435 1759 Pfam PF01835 MG2 domain 539 632 4.3E-15 T 14-10-2018 IPR002890 Alpha-2-macroglobulin, N-terminal GO:0004866 Amico_0171 6fd7226dfe21a8ea37aff6ed7ca6f435 1759 SMART SM01359 896 1043 2.7E-27 T 14-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 Amico_0171 6fd7226dfe21a8ea37aff6ed7ca6f435 1759 Pfam PF00207 Alpha-2-macroglobulin family 1117 1203 2.9E-8 T 14-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 Amico_0171 6fd7226dfe21a8ea37aff6ed7ca6f435 1759 SMART SM01360 1116 1204 7.2E-19 T 14-10-2018 IPR001599 Alpha-2-macroglobulin GO:0004866 Amico_0171 6fd7226dfe21a8ea37aff6ed7ca6f435 1759 Pfam PF11974 Alpha-2-macroglobulin MG1 domain 432 531 2.2E-18 T 14-10-2018 Amico_0171 6fd7226dfe21a8ea37aff6ed7ca6f435 1759 Pfam PF07703 Alpha-2-macroglobulin family N-terminal region 898 1042 3.7E-19 T 14-10-2018 IPR011625 Alpha-2-macroglobulin, N-terminal 2 Amico_0754 87efc9c2490c93a91da626db2025461a 178 TIGRFAM TIGR00043 TIGR00043: rRNA maturation RNase YbeY 49 155 1.8E-31 T 14-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Amico_0754 87efc9c2490c93a91da626db2025461a 178 SUPERFAMILY SSF55486 37 159 3.84E-36 T 14-10-2018 Amico_0754 87efc9c2490c93a91da626db2025461a 178 Hamap MF_00009 Endoribonuclease YbeY [ybeY]. 2 169 20.462 T 14-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Amico_0754 87efc9c2490c93a91da626db2025461a 178 Gene3D G3DSA:3.40.390.30 15 172 8.3E-40 T 14-10-2018 IPR023091 Metalloprotease catalytic domain superfamily, predicted GO:0004222 Amico_0754 87efc9c2490c93a91da626db2025461a 178 Pfam PF02130 Uncharacterized protein family UPF0054 27 157 2.0E-34 T 14-10-2018 IPR002036 Endoribonuclease YbeY GO:0004222|GO:0006364 Amico_1154 64f02bc43e133b4fca61d8a7cb5b8d82 291 SUPERFAMILY SSF55060 158 272 5.04E-14 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Amico_1154 64f02bc43e133b4fca61d8a7cb5b8d82 291 Hamap MF_00061 Putative 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase [ispE]. 3 287 19.528 T 14-10-2018 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase GO:0016114|GO:0050515 KEGG: 00900+2.7.1.148|MetaCyc: PWY-7560 Amico_1154 64f02bc43e133b4fca61d8a7cb5b8d82 291 Gene3D G3DSA:3.30.230.10 1 153 7.5E-30 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Amico_1154 64f02bc43e133b4fca61d8a7cb5b8d82 291 Pfam PF08544 GHMP kinases C terminal 231 263 3.3E-4 T 14-10-2018 IPR013750 GHMP kinase, C-terminal domain Amico_1154 64f02bc43e133b4fca61d8a7cb5b8d82 291 SUPERFAMILY SSF54211 4 143 2.35E-18 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_1154 64f02bc43e133b4fca61d8a7cb5b8d82 291 Gene3D G3DSA:3.30.70.890 158 286 6.2E-18 T 14-10-2018 IPR036554 GHMP kinase, C-terminal domain superfamily Amico_0995 9806f66d1b53a1bf95daccdaa69d9bf6 393 SUPERFAMILY SSF55031 185 298 1.83E-29 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_0995 9806f66d1b53a1bf95daccdaa69d9bf6 393 Pfam PF01546 Peptidase family M20/M25/M40 78 385 4.0E-28 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_0995 9806f66d1b53a1bf95daccdaa69d9bf6 393 PIRSF PIRSF005962 1 393 8.3E-125 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_0995 9806f66d1b53a1bf95daccdaa69d9bf6 393 Gene3D G3DSA:3.30.70.360 183 297 3.3E-131 T 14-10-2018 Amico_0995 9806f66d1b53a1bf95daccdaa69d9bf6 393 Pfam PF07687 Peptidase dimerisation domain 188 279 1.5E-11 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_0995 9806f66d1b53a1bf95daccdaa69d9bf6 393 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 377 2.0E-105 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_0995 9806f66d1b53a1bf95daccdaa69d9bf6 393 Gene3D G3DSA:3.40.630.10 15 374 3.3E-131 T 14-10-2018 Amico_0995 9806f66d1b53a1bf95daccdaa69d9bf6 393 SUPERFAMILY SSF53187 4 387 1.49E-79 T 14-10-2018 Amico_1133 f6ed620da7a0ff616a15bcaeb0efe564 145 Pfam PF00692 dUTPase 14 141 1.1E-31 T 14-10-2018 IPR029054 dUTPase-like Amico_1133 f6ed620da7a0ff616a15bcaeb0efe564 145 Gene3D G3DSA:2.70.40.10 5 142 1.1E-49 T 14-10-2018 IPR036157 dUTPase-like superfamily Amico_1133 f6ed620da7a0ff616a15bcaeb0efe564 145 TIGRFAM TIGR00576 dut: dUTP diphosphatase 8 141 4.4E-44 T 14-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 Amico_1133 f6ed620da7a0ff616a15bcaeb0efe564 145 SUPERFAMILY SSF51283 4 142 3.66E-45 T 14-10-2018 IPR036157 dUTPase-like superfamily Amico_0285 ff6c9f53ed12c696cd90aa0bf4017539 253 Gene3D G3DSA:3.20.20.70 45 239 1.0E-11 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0285 ff6c9f53ed12c696cd90aa0bf4017539 253 SUPERFAMILY SSF51569 46 232 1.26E-15 T 14-10-2018 Amico_1174 14ab65ee88354f3d324fd901505561c7 406 Gene3D G3DSA:3.90.1260.10 64 352 5.6E-151 T 14-10-2018 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Amico_1174 14ab65ee88354f3d324fd901505561c7 406 TIGRFAM TIGR00032 argG: argininosuccinate synthase 6 396 6.6E-159 T 14-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Amico_1174 14ab65ee88354f3d324fd901505561c7 406 SUPERFAMILY SSF69864 172 398 4.97E-95 T 14-10-2018 Amico_1174 14ab65ee88354f3d324fd901505561c7 406 Gene3D G3DSA:1.20.5.470 362 397 1.0E-12 T 14-10-2018 Amico_1174 14ab65ee88354f3d324fd901505561c7 406 Pfam PF00764 Arginosuccinate synthase 8 392 1.2E-168 T 14-10-2018 IPR001518 Argininosuccinate synthase GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Amico_1174 14ab65ee88354f3d324fd901505561c7 406 Gene3D G3DSA:3.40.50.620 7 172 5.6E-151 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1174 14ab65ee88354f3d324fd901505561c7 406 Hamap MF_00005 Argininosuccinate synthase [argG]. 4 397 52.425 T 14-10-2018 IPR023434 Argininosuccinate synthase, type 1 subfamily GO:0004055 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Amico_1174 14ab65ee88354f3d324fd901505561c7 406 ProSitePatterns PS00564 Argininosuccinate synthase signature 1. 10 18 - T 14-10-2018 IPR018223 Argininosuccinate synthase, conserved site GO:0004055|GO:0005524|GO:0006526 KEGG: 00220+6.3.4.5|KEGG: 00250+6.3.4.5|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Amico_1174 14ab65ee88354f3d324fd901505561c7 406 SUPERFAMILY SSF52402 4 204 5.07E-49 T 14-10-2018 Amico_0796 1d3a4d52fd19d3bc1af12ea33648a7f9 275 SUPERFAMILY SSF52518 15 235 5.49E-73 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_0796 1d3a4d52fd19d3bc1af12ea33648a7f9 275 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 52 199 5.5E-37 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Amico_0796 1d3a4d52fd19d3bc1af12ea33648a7f9 275 Gene3D G3DSA:3.40.50.970 29 238 3.4E-29 T 14-10-2018 Amico_0604 fd820b088b89fbb7460e3b5a6e55b964 578 Pfam PF00905 Penicillin binding protein transpeptidase domain 261 568 3.6E-73 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Amico_0604 fd820b088b89fbb7460e3b5a6e55b964 578 SUPERFAMILY SSF56601 244 572 3.7E-98 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Amico_0604 fd820b088b89fbb7460e3b5a6e55b964 578 Gene3D G3DSA:3.40.710.10 243 576 1.2E-99 T 14-10-2018 Amico_0604 fd820b088b89fbb7460e3b5a6e55b964 578 Pfam PF03717 Penicillin-binding Protein dimerisation domain 56 229 3.7E-36 T 14-10-2018 IPR005311 Penicillin-binding protein, dimerisation domain GO:0008658 Amico_0604 fd820b088b89fbb7460e3b5a6e55b964 578 TIGRFAM TIGR03423 pbp2_mrdA: penicillin-binding protein 2 10 572 9.0E-178 T 14-10-2018 IPR017790 Penicillin-binding protein 2 GO:0008658|GO:0009002|GO:0009252|GO:0016020 KEGG: 00550+3.4.16.4|MetaCyc: PWY-5265|MetaCyc: PWY-6471 Amico_0604 fd820b088b89fbb7460e3b5a6e55b964 578 Gene3D G3DSA:3.30.1390.30 76 154 1.9E-43 T 14-10-2018 Amico_0604 fd820b088b89fbb7460e3b5a6e55b964 578 SUPERFAMILY SSF56519 48 243 9.68E-41 T 14-10-2018 IPR036138 Penicillin-binding protein, dimerisation domain superfamily GO:0008658 Amico_0604 fd820b088b89fbb7460e3b5a6e55b964 578 Gene3D G3DSA:3.90.1310.10 56 239 1.9E-43 T 14-10-2018 Amico_1418 ccf2aa8c1cbb37b928423a2425e84b59 148 TIGRFAM TIGR00158 L9: ribosomal protein bL9 1 148 3.2E-41 T 14-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_1418 ccf2aa8c1cbb37b928423a2425e84b59 148 Pfam PF01281 Ribosomal protein L9, N-terminal domain 1 46 3.1E-23 T 14-10-2018 IPR020070 Ribosomal protein L9, N-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1418 ccf2aa8c1cbb37b928423a2425e84b59 148 SUPERFAMILY SSF55658 1 57 9.59E-18 T 14-10-2018 IPR009027 Ribosomal protein L9/RNase H1, N-terminal Amico_1418 ccf2aa8c1cbb37b928423a2425e84b59 148 SUPERFAMILY SSF55653 57 147 9.03E-24 T 14-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily Amico_1418 ccf2aa8c1cbb37b928423a2425e84b59 148 Gene3D G3DSA:3.40.5.10 1 52 1.1E-22 T 14-10-2018 IPR036935 Ribosomal protein L9, N-terminal domain superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1418 ccf2aa8c1cbb37b928423a2425e84b59 148 Pfam PF03948 Ribosomal protein L9, C-terminal domain 63 147 1.3E-25 T 14-10-2018 IPR020069 Ribosomal protein L9, C-terminal Amico_1418 ccf2aa8c1cbb37b928423a2425e84b59 148 Hamap MF_00503 50S ribosomal protein L9 [rplI]. 1 148 24.883 T 14-10-2018 IPR020594 Ribosomal protein L9, bacteria/chloroplast GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_1418 ccf2aa8c1cbb37b928423a2425e84b59 148 Gene3D G3DSA:3.10.430.100 60 148 4.7E-26 T 14-10-2018 IPR036791 Ribosomal protein L9, C-terminal domain superfamily Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 255 273 1.2E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 110 131 1.2E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 204 233 1.2E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 75 102 1.2E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 34 56 1.2E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 238 254 1.2E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 PRINTS PR00085 Tetrahydrofolate dehydrogenase/cyclohydrolase family signature 155 175 1.2E-87 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 Pfam PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain 5 121 7.4E-42 T 14-10-2018 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 Gene3D G3DSA:3.40.50.10860 8 275 7.7E-120 T 14-10-2018 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 SUPERFAMILY SSF53223 1 122 2.3E-41 T 14-10-2018 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 Gene3D G3DSA:3.40.50.720 6 258 7.7E-120 T 14-10-2018 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 SUPERFAMILY SSF51735 123 278 3.81E-56 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 Hamap MF_01576 Bifunctional protein FolD [folD]. 3 281 39.52 T 14-10-2018 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase GO:0004488|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 Pfam PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain 124 278 1.3E-72 T 14-10-2018 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO:0004488 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Amico_1545 e1083d81a0926583a6b2adce4de0b67f 281 ProSitePatterns PS00766 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. 76 101 - T 14-10-2018 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site GO:0003824|GO:0055114 KEGG: 00670+1.5.1.5+3.5.4.9|KEGG: 00720+1.5.1.5+3.5.4.9|MetaCyc: PWY-1722|MetaCyc: PWY-2201|MetaCyc: PWY-3841|MetaCyc: PWY-5030|MetaCyc: PWY-5497|MetaCyc: PWY-6613|MetaCyc: PWY-7909|Reactome: R-HSA-196757 Amico_0743 5ac16ee595e51867d8ad8c36e407be99 577 Gene3D G3DSA:3.20.20.140 68 311 1.6E-118 T 14-10-2018 Amico_0743 5ac16ee595e51867d8ad8c36e407be99 577 Pfam PF13382 Adenine deaminase C-terminal domain 398 564 6.4E-56 T 14-10-2018 IPR026912 Adenine deaminase C-terminal domain KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 Amico_0743 5ac16ee595e51867d8ad8c36e407be99 577 TIGRFAM TIGR01178 ade: adenine deaminase 17 562 7.7E-157 T 14-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 Amico_0743 5ac16ee595e51867d8ad8c36e407be99 577 Gene3D G3DSA:2.30.40.10 9 345 1.6E-118 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_0743 5ac16ee595e51867d8ad8c36e407be99 577 Hamap MF_01518 Adenine deaminase [ade]. 17 569 34.117 T 14-10-2018 IPR006679 Adenine deaminase GO:0000034|GO:0006146 KEGG: 00230+3.5.4.2|MetaCyc: PWY-6610 Amico_0743 5ac16ee595e51867d8ad8c36e407be99 577 SUPERFAMILY SSF51338 12 352 1.89E-18 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_0743 5ac16ee595e51867d8ad8c36e407be99 577 SUPERFAMILY SSF51556 68 316 8.67E-20 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_0743 5ac16ee595e51867d8ad8c36e407be99 577 Pfam PF01979 Amidohydrolase family 65 346 5.7E-24 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 SUPERFAMILY SSF53671 4 315 2.1E-99 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 Hamap MF_01109 Ornithine carbamoyltransferase, catabolic [argI]. 7 314 79.929 T 14-10-2018 IPR024904 Ornithine carbamoyltransferase GO:0004585|GO:0006591 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 ProSitePatterns PS00097 Aspartate and ornithine carbamoyltransferases signature. 53 60 - T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 124 138 7.0E-29 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 51 65 7.0E-29 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 84 97 7.0E-29 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 292 303 7.0E-29 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 PRINTS PR00102 Ornithine carbamoyltransferase signature 229 239 7.0E-29 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 Pfam PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain 155 311 1.4E-53 T 14-10-2018 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain GO:0006520|GO:0016597|GO:0016743 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 Gene3D G3DSA:3.40.50.1370 5 310 2.6E-122 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 Gene3D G3DSA:3.40.50.1370 151 300 2.6E-122 T 14-10-2018 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily GO:0006520|GO:0016597|GO:0016743 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 TIGRFAM TIGR00658 orni_carb_tr: ornithine carbamoyltransferase 8 313 2.3E-128 T 14-10-2018 IPR002292 Ornithine/putrescine carbamoyltransferase GO:0016743 KEGG: 00220+2.1.3.3|MetaCyc: PWY-4981|MetaCyc: PWY-4984|MetaCyc: PWY-7400|Reactome: R-HSA-1268020|Reactome: R-HSA-70635 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 53 72 2.4E-23 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 278 301 2.4E-23 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 266 275 2.4E-23 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 PRINTS PR00100 Aspartate/ornithine carbamoyltransferase superfamily signature 135 146 2.4E-23 T 14-10-2018 IPR006130 Aspartate/ornithine carbamoyltransferase GO:0006520|GO:0016597|GO:0016743 Amico_0870 5253a2a75a8baf0dcab4bbbc3dc4330d 316 Pfam PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain 8 148 5.8E-47 T 14-10-2018 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding GO:0006520|GO:0016743 Amico_0018 93ce7803354eedce4744d5db3c5fd7ce 116 SUPERFAMILY SSF53146 1 114 9.16E-27 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Amico_0018 93ce7803354eedce4744d5db3c5fd7ce 116 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 9 98 3.2E-18 T 14-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Amico_0018 93ce7803354eedce4744d5db3c5fd7ce 116 Gene3D G3DSA:3.30.420.130 1 114 7.1E-26 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 Pfam PF07497 Rho termination factor, RNA-binding domain 64 134 1.1E-29 T 14-10-2018 IPR011113 Rho termination factor, RNA-binding domain GO:0003723|GO:0006353 Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 Gene3D G3DSA:3.40.50.300 140 423 8.5E-123 T 14-10-2018 Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 SMART SM00382 176 361 1.7E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 SUPERFAMILY SSF68912 12 56 8.63E-8 T 14-10-2018 IPR036269 Rho termination factor, N-terminal domain superfamily Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 SMART SM00959 16 58 2.6E-7 T 14-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 Hamap MF_01884 Transcription termination factor Rho [rho]. 1 425 202.975 T 14-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 Gene3D G3DSA:2.40.50.140 57 132 1.8E-28 T 14-10-2018 Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 SUPERFAMILY SSF52540 100 377 4.35E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 165 369 6.0E-21 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 Pfam PF07498 Rho termination factor, N-terminal domain 19 56 3.5E-10 T 14-10-2018 IPR011112 Rho termination factor, N-terminal GO:0006353 Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 TIGRFAM TIGR00767 rho: transcription termination factor Rho 14 423 1.8E-192 T 14-10-2018 IPR004665 Transcription termination factor Rho GO:0003723|GO:0005524|GO:0006353|GO:0008186 Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 SUPERFAMILY SSF50249 62 134 1.56E-22 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 SMART SM00357 63 127 2.0E-14 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 Amico_1476 f717ac7f6f13ecea9a3118345c84d160 425 Gene3D G3DSA:1.10.720.10 8 56 4.8E-11 T 14-10-2018 Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 Pfam PF09371 Tex-like protein N-terminal domain 12 194 2.0E-60 T 14-10-2018 IPR018974 Tex-like protein, N-terminal Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 SUPERFAMILY SSF47781 461 549 6.23E-29 T 14-10-2018 IPR010994 RuvA domain 2-like Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 SMART SM00316 640 711 9.4E-24 T 14-10-2018 IPR022967 RNA-binding domain, S1 Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 SUPERFAMILY SSF47781 552 621 9.34E-19 T 14-10-2018 IPR010994 RuvA domain 2-like Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 Pfam PF00575 S1 RNA binding domain 640 711 2.8E-20 T 14-10-2018 IPR003029 S1 domain GO:0003676 Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 SUPERFAMILY SSF158832 6 314 2.75E-101 T 14-10-2018 Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 Gene3D G3DSA:3.30.420.140 318 442 1.5E-144 T 14-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 Pfam PF16921 Tex protein YqgF-like domain 319 441 8.0E-46 T 14-10-2018 IPR032639 Tex protein, YqgF-like domain Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 SMART SM00732 319 415 4.2E-23 T 14-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 SUPERFAMILY SSF50249 628 717 3.13E-24 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 Gene3D G3DSA:2.40.50.140 624 715 3.6E-26 T 14-10-2018 Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 SUPERFAMILY SSF53098 315 460 1.29E-42 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 Gene3D G3DSA:1.10.3500.10 115 489 1.5E-144 T 14-10-2018 IPR023323 Tex-like domain superfamily Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 Gene3D G3DSA:1.10.150.310 490 621 6.9E-49 T 14-10-2018 Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 Pfam PF12836 Helix-hairpin-helix motif 482 546 1.5E-27 T 14-10-2018 Amico_0535 eea0bd82624e2cacb710ab3713d1363d 718 Gene3D G3DSA:1.10.10.650 1 112 6.6E-35 T 14-10-2018 IPR023319 Tex-like protein, HTH domain superfamily Amico_1753 f30314a69684fbe0857dc6ccdc1a5773 320 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 110 288 4.9E-48 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Amico_1753 f30314a69684fbe0857dc6ccdc1a5773 320 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 15 320 9.5E-27 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Amico_1753 f30314a69684fbe0857dc6ccdc1a5773 320 SUPERFAMILY SSF51735 103 289 2.56E-47 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1753 f30314a69684fbe0857dc6ccdc1a5773 320 Gene3D G3DSA:3.40.50.720 22 313 3.6E-95 T 14-10-2018 Amico_1753 f30314a69684fbe0857dc6ccdc1a5773 320 ProSitePatterns PS00670 D-isomer specific 2-hydroxyacid dehydrogenases signature 2. 197 219 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Amico_1753 f30314a69684fbe0857dc6ccdc1a5773 320 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 226 242 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Amico_1753 f30314a69684fbe0857dc6ccdc1a5773 320 Gene3D G3DSA:3.40.50.720 101 289 3.6E-95 T 14-10-2018 Amico_1753 f30314a69684fbe0857dc6ccdc1a5773 320 SUPERFAMILY SSF52283 23 120 3.78E-25 T 14-10-2018 Amico_1899 9d20a962d4e37a2faa4525a68b36e008 229 Pfam PF00072 Response regulator receiver domain 5 117 5.7E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1899 9d20a962d4e37a2faa4525a68b36e008 229 Gene3D G3DSA:3.40.50.12740 3 214 3.2E-63 T 14-10-2018 Amico_1899 9d20a962d4e37a2faa4525a68b36e008 229 Pfam PF00196 Bacterial regulatory proteins, luxR family 153 208 3.8E-20 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1899 9d20a962d4e37a2faa4525a68b36e008 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 154 168 3.5E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1899 9d20a962d4e37a2faa4525a68b36e008 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 168 184 3.5E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1899 9d20a962d4e37a2faa4525a68b36e008 229 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 184 196 3.5E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1899 9d20a962d4e37a2faa4525a68b36e008 229 SUPERFAMILY SSF46894 148 214 8.16E-21 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Amico_1899 9d20a962d4e37a2faa4525a68b36e008 229 ProSitePatterns PS00622 LuxR-type HTH domain signature. 168 195 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1899 9d20a962d4e37a2faa4525a68b36e008 229 SMART SM00421 151 208 6.1E-22 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1899 9d20a962d4e37a2faa4525a68b36e008 229 SUPERFAMILY SSF52172 3 131 2.85E-33 T 14-10-2018 IPR011006 CheY-like superfamily Amico_1899 9d20a962d4e37a2faa4525a68b36e008 229 SMART SM00448 3 116 6.5E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1565 b92b3720bfa11debb2b7f49ad0cce2b9 229 Pfam PF13353 4Fe-4S single cluster domain 16 120 2.8E-11 T 14-10-2018 Amico_1565 b92b3720bfa11debb2b7f49ad0cce2b9 229 Pfam PF04055 Radical SAM superfamily 21 174 1.3E-20 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_1565 b92b3720bfa11debb2b7f49ad0cce2b9 229 SUPERFAMILY SSF102114 19 217 1.31E-32 T 14-10-2018 Amico_1565 b92b3720bfa11debb2b7f49ad0cce2b9 229 Gene3D G3DSA:3.20.20.70 2 225 3.8E-41 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_1565 b92b3720bfa11debb2b7f49ad0cce2b9 229 TIGRFAM TIGR02495 NrdG2: anaerobic ribonucleoside-triphosphate reductase activating protein 3 190 2.5E-64 T 14-10-2018 IPR012840 Anaerobic ribonucleoside-triphosphate reductase activating protein Amico_0386 bf239940561441e875d0526f8d16c4a1 442 SUPERFAMILY SSF53335 147 437 6.56E-51 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0386 bf239940561441e875d0526f8d16c4a1 442 Gene3D G3DSA:1.10.940.10 4 139 1.9E-14 T 14-10-2018 IPR035926 NusB-like superfamily Amico_0386 bf239940561441e875d0526f8d16c4a1 442 SUPERFAMILY SSF48013 6 125 2.78E-14 T 14-10-2018 IPR035926 NusB-like superfamily Amico_0386 bf239940561441e875d0526f8d16c4a1 442 Pfam PF01029 NusB family 6 122 4.8E-10 T 14-10-2018 IPR006027 NusB/RsmB/TIM44 GO:0003723|GO:0006355 Amico_0386 bf239940561441e875d0526f8d16c4a1 442 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 319 331 2.0E-20 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Amico_0386 bf239940561441e875d0526f8d16c4a1 442 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 369 385 2.0E-20 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Amico_0386 bf239940561441e875d0526f8d16c4a1 442 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 224 238 2.0E-20 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Amico_0386 bf239940561441e875d0526f8d16c4a1 442 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 420 437 2.0E-20 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Amico_0386 bf239940561441e875d0526f8d16c4a1 442 PRINTS PR02008 RNA (C5-cytosine) methyltransferase signature 254 264 2.0E-20 T 14-10-2018 IPR023267 RNA (C5-cytosine) methyltransferase Amico_0386 bf239940561441e875d0526f8d16c4a1 442 Pfam PF01189 16S rRNA methyltransferase RsmB/F 250 432 5.1E-34 T 14-10-2018 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type GO:0008168 Amico_0386 bf239940561441e875d0526f8d16c4a1 442 Gene3D G3DSA:3.40.50.150 148 438 6.8E-54 T 14-10-2018 Amico_1770 feae77eeeabba7ce94b84e61bc0310a0 649 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 31 639 1.4E-178 T 14-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ Amico_1770 feae77eeeabba7ce94b84e61bc0310a0 649 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 133 568 3.9E-82 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1588 b8dcb496d66ce24cc607f1c665ecca21 357 Gene3D G3DSA:3.40.190.170 25 356 2.2E-108 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1588 b8dcb496d66ce24cc607f1c665ecca21 357 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 35 338 7.4E-64 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_1588 b8dcb496d66ce24cc607f1c665ecca21 357 PIRSF PIRSF006470 1 355 1.7E-70 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_1588 b8dcb496d66ce24cc607f1c665ecca21 357 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 33 278 2.2E-55 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 Gene3D G3DSA:2.40.30.10 211 340 6.4E-56 T 14-10-2018 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 Pfam PF03144 Elongation factor Tu domain 2 230 299 4.8E-18 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 145 5.0E-14 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 SUPERFAMILY SSF52540 9 231 1.64E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 SUPERFAMILY SSF50465 304 399 2.39E-35 T 14-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 Pfam PF03143 Elongation factor Tu C-terminal domain 304 398 3.9E-33 T 14-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 Gene3D G3DSA:2.40.30.10 344 399 1.2E-26 T 14-10-2018 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 400 59.856 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 SUPERFAMILY SSF50447 210 307 3.34E-32 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 Pfam PF00009 Elongation factor Tu GTP binding domain 10 206 1.6E-58 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 PRINTS PR00315 GTP-binding elongation factor signature 94 105 9.8E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 PRINTS PR00315 GTP-binding elongation factor signature 131 140 9.8E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 PRINTS PR00315 GTP-binding elongation factor signature 14 27 9.8E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 PRINTS PR00315 GTP-binding elongation factor signature 78 88 9.8E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 PRINTS PR00315 GTP-binding elongation factor signature 58 66 9.8E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 Gene3D G3DSA:3.40.50.300 1 208 8.4E-69 T 14-10-2018 Amico_0311 50e39a959b5b2690fb0a0b92b9be9abc 400 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 399 1.7E-219 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Amico_1493 d14d6fdbaafa2c1eb155244a7ef59296 335 Pfam PF01380 SIS domain 52 181 1.9E-28 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Amico_1493 d14d6fdbaafa2c1eb155244a7ef59296 335 Gene3D G3DSA:3.40.50.10490 13 206 2.9E-59 T 14-10-2018 Amico_1493 d14d6fdbaafa2c1eb155244a7ef59296 335 PIRSF PIRSF004692 8 335 1.0E-121 T 14-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 Amico_1493 d14d6fdbaafa2c1eb155244a7ef59296 335 SMART SM00116 221 269 0.002 T 14-10-2018 IPR000644 CBS domain Amico_1493 d14d6fdbaafa2c1eb155244a7ef59296 335 SMART SM00116 287 334 1.8 T 14-10-2018 IPR000644 CBS domain Amico_1493 d14d6fdbaafa2c1eb155244a7ef59296 335 SUPERFAMILY SSF53697 23 335 1.33E-59 T 14-10-2018 Amico_1493 d14d6fdbaafa2c1eb155244a7ef59296 335 Gene3D G3DSA:3.10.580.10 207 332 4.5E-44 T 14-10-2018 Amico_1493 d14d6fdbaafa2c1eb155244a7ef59296 335 TIGRFAM TIGR00393 kpsF: sugar isomerase, KpsF/GutQ family 56 325 3.3E-93 T 14-10-2018 IPR004800 Phosphosugar isomerase, KdsD/KpsF-type GO:0005975|GO:0016853 Amico_1493 d14d6fdbaafa2c1eb155244a7ef59296 335 Pfam PF00571 CBS domain 280 332 3.0E-7 T 14-10-2018 IPR000644 CBS domain Amico_1493 d14d6fdbaafa2c1eb155244a7ef59296 335 Pfam PF00571 CBS domain 212 268 3.0E-8 T 14-10-2018 IPR000644 CBS domain Amico_1559 35320c2131a3e0e7c47eae8031dab861 229 SMART SM00382 29 214 3.0E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1559 35320c2131a3e0e7c47eae8031dab861 229 Gene3D G3DSA:3.40.50.300 4 225 3.3E-52 T 14-10-2018 Amico_1559 35320c2131a3e0e7c47eae8031dab861 229 Pfam PF00005 ABC transporter 24 165 4.0E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1559 35320c2131a3e0e7c47eae8031dab861 229 SUPERFAMILY SSF52540 6 219 1.54E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0044 146908a1c0430c36d5b3fe183eaab0d7 293 Gene3D G3DSA:3.40.190.10 120 254 8.9E-59 T 14-10-2018 Amico_0044 146908a1c0430c36d5b3fe183eaab0d7 293 Pfam PF12849 PBP superfamily domain 28 279 2.2E-32 T 14-10-2018 IPR024370 PBP domain Amico_0044 146908a1c0430c36d5b3fe183eaab0d7 293 SUPERFAMILY SSF53850 26 292 5.62E-61 T 14-10-2018 Amico_0044 146908a1c0430c36d5b3fe183eaab0d7 293 Gene3D G3DSA:3.40.190.10 35 284 8.9E-59 T 14-10-2018 Amico_0804 d2011fdf547f3627c5292650e8c54bb7 193 SUPERFAMILY SSF160527 80 191 1.44E-15 T 14-10-2018 Amico_0804 d2011fdf547f3627c5292650e8c54bb7 193 Gene3D G3DSA:3.30.2320.30 80 191 1.7E-14 T 14-10-2018 IPR038495 V-type ATPase subunit E, C-terminal domain superfamily Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0804 d2011fdf547f3627c5292650e8c54bb7 193 Pfam PF01991 ATP synthase (E/31 kDa) subunit 9 191 6.8E-10 T 14-10-2018 IPR002842 V-type ATPase subunit E GO:0015991|GO:0033178|GO:0046961 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_1452 cff1db63f07864825f4230de3a4faf6b 540 Pfam PF02554 Carbon starvation protein CstA 4 342 9.9E-114 T 14-10-2018 IPR003706 CstA, N-terminal domain GO:0009267|GO:0016020 Amico_1452 cff1db63f07864825f4230de3a4faf6b 540 Pfam PF13722 5TM C-terminal transporter carbon starvation CstA 374 493 1.2E-28 T 14-10-2018 IPR025299 CstA, C-terminal domain Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 ProSitePatterns PS01056 NAD-dependent DNA ligase signature 2. 330 345 - T 14-10-2018 IPR033136 NAD-dependent DNA ligase, conserved site Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Gene3D G3DSA:1.10.150.20 504 584 4.6E-25 T 14-10-2018 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Gene3D G3DSA:3.40.50.10190 589 669 1.4E-26 T 14-10-2018 IPR036420 BRCT domain superfamily Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 SMART SM00292 592 669 4.2E-12 T 14-10-2018 IPR001357 BRCT domain Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 ProSitePatterns PS01055 NAD-dependent DNA ligase signature 1. 116 145 - T 14-10-2018 IPR018239 NAD-dependent DNA ligase, active site Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Hamap MF_01588 DNA ligase [ligA]. 4 666 52.24 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 SMART SM00278 479 498 0.091 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 SMART SM00278 543 562 5.3 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 SMART SM00278 445 464 180.0 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Pfam PF12826 Helix-hairpin-helix motif 510 572 3.3E-23 T 14-10-2018 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Pfam PF14520 Helix-hairpin-helix domain 445 499 3.9E-5 T 14-10-2018 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 SUPERFAMILY SSF52113 593 667 1.64E-18 T 14-10-2018 IPR036420 BRCT domain superfamily Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Gene3D G3DSA:2.40.50.140 318 390 4.0E-31 T 14-10-2018 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 SUPERFAMILY SSF47781 403 582 5.56E-59 T 14-10-2018 IPR010994 RuvA domain 2-like Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Pfam PF03120 NAD-dependent DNA ligase OB-fold domain 321 397 4.9E-34 T 14-10-2018 IPR004150 NAD-dependent DNA ligase, OB-fold GO:0003911|GO:0006260|GO:0006281 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Gene3D G3DSA:1.10.287.610 1 72 1.2E-29 T 14-10-2018 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Gene3D G3DSA:1.10.150.20 431 503 2.8E-29 T 14-10-2018 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 TIGRFAM TIGR00575 dnlj: DNA ligase, NAD-dependent 13 662 2.8E-256 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Gene3D G3DSA:3.30.470.90 73 317 3.5E-94 T 14-10-2018 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 SUPERFAMILY SSF56091 3 315 8.46E-116 T 14-10-2018 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Pfam PF03119 NAD-dependent DNA ligase C4 zinc finger domain 406 433 3.3E-10 T 14-10-2018 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type GO:0003911|GO:0006260|GO:0006281 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 SUPERFAMILY SSF50249 317 399 2.06E-26 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Pfam PF01653 NAD-dependent DNA ligase adenylation domain 5 317 1.3E-120 T 14-10-2018 IPR013839 NAD-dependent DNA ligase, adenylation GO:0003911 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Gene3D G3DSA:2.20.70.80 391 427 3.6E-11 T 14-10-2018 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 Pfam PF00533 BRCA1 C Terminus (BRCT) domain 592 666 3.5E-14 T 14-10-2018 IPR001357 BRCT domain Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 SMART SM00532 5 447 4.4E-260 T 14-10-2018 IPR013840 NAD-dependent DNA ligase, N-terminal GO:0003911 Amico_1375 e9cf4359e880a75b3eee4d2a7a2742cd 684 PIRSF PIRSF001604 1 670 6.1E-257 T 14-10-2018 IPR001679 NAD-dependent DNA ligase GO:0003911|GO:0006260|GO:0006281 Amico_0194 cc4b38e1fef081af52acfca7b2fca406 608 TIGRFAM TIGR00181 pepF: oligoendopeptidase F 18 606 4.9E-188 T 14-10-2018 IPR004438 Peptidase M3B, oligoendopeptidase F GO:0004222|GO:0006508 Amico_0194 cc4b38e1fef081af52acfca7b2fca406 608 Pfam PF01432 Peptidase family M3 215 595 1.2E-66 T 14-10-2018 IPR001567 Peptidase M3A/M3B catalytic domain GO:0004222|GO:0006508 Amico_0194 cc4b38e1fef081af52acfca7b2fca406 608 SUPERFAMILY SSF55486 15 591 7.13E-112 T 14-10-2018 Amico_0194 cc4b38e1fef081af52acfca7b2fca406 608 Gene3D G3DSA:1.10.287.830 192 238 2.1E-16 T 14-10-2018 Amico_0194 cc4b38e1fef081af52acfca7b2fca406 608 Pfam PF08439 Oligopeptidase F 125 194 6.3E-21 T 14-10-2018 IPR013647 Oligopeptidase F, N-terminal domain Amico_0194 cc4b38e1fef081af52acfca7b2fca406 608 Gene3D G3DSA:1.10.1370.20 239 608 7.7E-134 T 14-10-2018 Amico_0194 cc4b38e1fef081af52acfca7b2fca406 608 Gene3D G3DSA:1.20.140.70 36 190 2.4E-45 T 14-10-2018 Amico_0077 d355d9def36f82457b83aa539eee0a0b 228 Gene3D G3DSA:3.30.1330.90 10 135 1.7E-19 T 14-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 Amico_0077 d355d9def36f82457b83aa539eee0a0b 228 Gene3D G3DSA:3.30.70.260 139 218 6.9E-10 T 14-10-2018 Amico_0077 d355d9def36f82457b83aa539eee0a0b 228 Pfam PF03315 Serine dehydratase beta chain 10 82 3.6E-12 T 14-10-2018 IPR005131 Serine dehydratase beta chain GO:0003941|GO:0006094|GO:0051539 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Amico_0077 d355d9def36f82457b83aa539eee0a0b 228 SUPERFAMILY SSF55021 136 210 3.4E-11 T 14-10-2018 Amico_0077 d355d9def36f82457b83aa539eee0a0b 228 TIGRFAM TIGR00719 sda_beta: L-serine dehydratase, iron-sulfur-dependent, beta subunit 4 195 1.6E-56 T 14-10-2018 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Amico_0077 d355d9def36f82457b83aa539eee0a0b 228 Pfam PF01842 ACT domain 148 197 2.0E-6 T 14-10-2018 IPR002912 ACT domain Amico_0077 d355d9def36f82457b83aa539eee0a0b 228 PIRSF PIRSF036692 1 220 6.8E-71 T 14-10-2018 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Amico_0077 d355d9def36f82457b83aa539eee0a0b 228 SUPERFAMILY SSF143548 16 134 1.44E-28 T 14-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 Amico_0559 a2e58ab0664e5dcc40b3bfad31ce497b 262 Pfam PF01927 Mut7-C RNAse domain 97 239 1.2E-40 T 14-10-2018 IPR002782 Mut7-C RNAse domain Amico_0559 a2e58ab0664e5dcc40b3bfad31ce497b 262 Pfam PF14451 Mut7-C ubiquitin 3 77 5.7E-17 T 14-10-2018 IPR027798 Ubiquitin Mut7-C domain Amico_1534 356585332f088d55dde0aed622d66e3c 329 Gene3D G3DSA:1.10.357.20 157 329 2.7E-41 T 14-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain Amico_1534 356585332f088d55dde0aed622d66e3c 329 SUPERFAMILY SSF161093 160 328 8.76E-34 T 14-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 Amico_1534 356585332f088d55dde0aed622d66e3c 329 Gene3D G3DSA:3.10.580.10 15 138 1.0E-13 T 14-10-2018 Amico_1534 356585332f088d55dde0aed622d66e3c 329 SUPERFAMILY SSF54631 21 149 2.02E-19 T 14-10-2018 Amico_1534 356585332f088d55dde0aed622d66e3c 329 Pfam PF01769 Divalent cation transporter 204 321 8.2E-19 T 14-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Amico_1830 abc44c2188426d72eeee2080da666449 428 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 423 1.0E-121 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1830 abc44c2188426d72eeee2080da666449 428 PIRSF PIRSF006066 1 428 7.7E-136 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1830 abc44c2188426d72eeee2080da666449 428 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 419 7.7E-109 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1558 2e1dafa171823c9a36deae275527d428 156 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 14 155 1.9E-50 T 14-10-2018 Amico_1558 2e1dafa171823c9a36deae275527d428 156 Gene3D G3DSA:3.40.30.10 73 155 3.4E-28 T 14-10-2018 Amico_1558 2e1dafa171823c9a36deae275527d428 156 SUPERFAMILY SSF52833 9 155 3.24E-49 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Amico_1558 2e1dafa171823c9a36deae275527d428 156 Gene3D G3DSA:1.10.10.1590 5 72 6.4E-19 T 14-10-2018 Amico_1558 2e1dafa171823c9a36deae275527d428 156 ProSitePatterns PS01099 Respiratory-chain NADH dehydrogenase 24 Kd subunit signature. 113 131 - T 14-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1558 2e1dafa171823c9a36deae275527d428 156 PIRSF PIRSF000216 1 156 2.4E-55 T 14-10-2018 IPR002023 NADH-quinone oxidoreductase subunit E-like GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 PIRSF PIRSF001529 1 423 4.8E-187 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 Hamap MF_00176 Serine--tRNA ligase [serS]. 1 421 42.798 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 Gene3D G3DSA:1.10.287.40 1 104 4.0E-24 T 14-10-2018 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 SUPERFAMILY SSF46589 1 112 3.77E-29 T 14-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 TIGRFAM TIGR00414 serS: serine--tRNA ligase 1 416 1.7E-175 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 Gene3D G3DSA:3.30.930.10 105 423 1.2E-127 T 14-10-2018 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 SUPERFAMILY SSF55681 116 417 4.98E-102 T 14-10-2018 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 Pfam PF02403 Seryl-tRNA synthetase N-terminal domain 1 107 2.0E-27 T 14-10-2018 IPR015866 Serine-tRNA synthetase, type1, N-terminal KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281|Reactome: R-HSA-2408557|Reactome: R-HSA-379716 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 PRINTS PR00981 Seryl-tRNA synthetase signature 263 275 2.9E-33 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 PRINTS PR00981 Seryl-tRNA synthetase signature 315 328 2.9E-33 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 PRINTS PR00981 Seryl-tRNA synthetase signature 275 288 2.9E-33 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 PRINTS PR00981 Seryl-tRNA synthetase signature 332 348 2.9E-33 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 PRINTS PR00981 Seryl-tRNA synthetase signature 350 366 2.9E-33 T 14-10-2018 IPR002317 Serine-tRNA ligase, type1 GO:0000166|GO:0004828|GO:0005524|GO:0005737|GO:0006434 KEGG: 00970+6.1.1.11|MetaCyc: PWY-6281 Amico_0996 9504e0c052496785daf05bd0100fe3fe 423 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 221 399 1.4E-38 T 14-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_1492 b1e75de57391b042e295529b2f19b51b 401 SUPERFAMILY SSF53756 43 385 1.35E-14 T 14-10-2018 Amico_1492 b1e75de57391b042e295529b2f19b51b 401 Gene3D G3DSA:3.40.50.2000 209 385 7.6E-55 T 14-10-2018 Amico_1492 b1e75de57391b042e295529b2f19b51b 401 Pfam PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) 30 195 1.5E-53 T 14-10-2018 IPR007507 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 Amico_1492 b1e75de57391b042e295529b2f19b51b 401 Gene3D G3DSA:3.40.50.11720 15 194 2.7E-40 T 14-10-2018 IPR038107 3-deoxy-D-manno-octulosonic-acid transferase, N-terminal domain superfamily KEGG: 00540+2.4.99.12|MetaCyc: PWY-7675 Amico_0986 5914ff5243aafe14a8e5346f1fa5a6aa 588 Gene3D G3DSA:3.40.50.300 76 435 1.8E-165 T 14-10-2018 Amico_0986 5914ff5243aafe14a8e5346f1fa5a6aa 588 SUPERFAMILY SSF47917 451 528 1.86E-14 T 14-10-2018 Amico_0986 5914ff5243aafe14a8e5346f1fa5a6aa 588 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 212 434 1.1E-89 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0986 5914ff5243aafe14a8e5346f1fa5a6aa 588 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 9 71 1.9E-10 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0986 5914ff5243aafe14a8e5346f1fa5a6aa 588 Gene3D G3DSA:2.40.30.20 2 74 9.6E-25 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0986 5914ff5243aafe14a8e5346f1fa5a6aa 588 Gene3D G3DSA:1.10.1140.10 436 584 1.5E-30 T 14-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0986 5914ff5243aafe14a8e5346f1fa5a6aa 588 Pfam PF16886 ATPsynthase alpha/beta subunit N-term extension 87 203 5.6E-32 T 14-10-2018 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0986 5914ff5243aafe14a8e5346f1fa5a6aa 588 Hamap MF_00309 V-type ATP synthase alpha chain [atpA]. 4 583 45.912 T 14-10-2018 IPR022878 V-type ATP synthase catalytic alpha chain GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0986 5914ff5243aafe14a8e5346f1fa5a6aa 588 SUPERFAMILY SSF52540 180 440 1.48E-76 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0986 5914ff5243aafe14a8e5346f1fa5a6aa 588 SUPERFAMILY SSF50615 3 74 2.88E-10 T 14-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0986 5914ff5243aafe14a8e5346f1fa5a6aa 588 Gene3D G3DSA:2.40.50.100 117 185 1.8E-165 T 14-10-2018 Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 SUPERFAMILY SSF53067 16 160 1.01E-32 T 14-10-2018 Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 SUPERFAMILY SSF53067 161 346 5.8E-46 T 14-10-2018 Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 144 163 1.2E-44 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 199 219 1.2E-44 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 80 103 1.2E-44 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 60 78 1.2E-44 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 312 338 1.2E-44 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 Gene3D G3DSA:3.30.420.40 166 329 6.5E-117 T 14-10-2018 Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 16 348 7.0E-125 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 Pfam PF06723 MreB/Mbl protein 18 348 3.0E-125 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 SMART SM00268 17 359 0.0089 T 14-10-2018 IPR004000 Actin family Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 Gene3D G3DSA:3.30.420.40 20 340 6.5E-117 T 14-10-2018 Amico_0601 ed18e3c5027dc949f82224cc22d0ec87 359 Gene3D G3DSA:3.90.640.10 198 271 6.5E-117 T 14-10-2018 Amico_1656 eae028cd69a13f61638ae343be299bbf 509 Gene3D G3DSA:3.40.190.10 37 274 2.3E-128 T 14-10-2018 Amico_1656 eae028cd69a13f61638ae343be299bbf 509 Gene3D G3DSA:3.10.105.10 275 485 2.3E-128 T 14-10-2018 Amico_1656 eae028cd69a13f61638ae343be299bbf 509 Gene3D G3DSA:3.90.76.10 62 176 2.3E-128 T 14-10-2018 Amico_1656 eae028cd69a13f61638ae343be299bbf 509 PIRSF PIRSF002741 15 508 8.5E-110 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Amico_1656 eae028cd69a13f61638ae343be299bbf 509 ProSitePatterns PS01040 Bacterial extracellular solute-binding proteins, family 5 signature. 78 99 - T 14-10-2018 IPR023765 Solute-binding protein family 5, conserved site Amico_1656 eae028cd69a13f61638ae343be299bbf 509 SUPERFAMILY SSF53850 30 501 3.86E-130 T 14-10-2018 Amico_1656 eae028cd69a13f61638ae343be299bbf 509 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 421 1.0E-90 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain Amico_0944 95330110856352646475fe9a22eba7d0 133 Pfam PF05973 Phage derived protein Gp49-like (DUF891) 45 117 8.7E-13 T 14-10-2018 IPR009241 Toxin HigB-like Amico_1420 72c661e66b19c8ad51ea4165ebf953a1 87 TIGRFAM TIGR00165 S18: ribosomal protein bS18 19 85 6.6E-34 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1420 72c661e66b19c8ad51ea4165ebf953a1 87 Pfam PF01084 Ribosomal protein S18 31 82 5.3E-30 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1420 72c661e66b19c8ad51ea4165ebf953a1 87 ProSitePatterns PS00057 Ribosomal protein S18 signature. 35 58 - T 14-10-2018 IPR018275 Ribosomal protein S18, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1420 72c661e66b19c8ad51ea4165ebf953a1 87 ProDom PD002239 RIBOSOMAL S18 RIBONUCLEOPROTEIN 30S RRNA-BINDING RNA-BINDING CHLOROPLAST PLASTID MITOCHONDRIAL ACETYLATION 42 87 2.0E-16 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1420 72c661e66b19c8ad51ea4165ebf953a1 87 PRINTS PR00974 Ribosomal protein S18 family signature 42 52 8.3E-20 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1420 72c661e66b19c8ad51ea4165ebf953a1 87 PRINTS PR00974 Ribosomal protein S18 family signature 52 59 8.3E-20 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1420 72c661e66b19c8ad51ea4165ebf953a1 87 PRINTS PR00974 Ribosomal protein S18 family signature 60 74 8.3E-20 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1420 72c661e66b19c8ad51ea4165ebf953a1 87 PRINTS PR00974 Ribosomal protein S18 family signature 74 84 8.3E-20 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1420 72c661e66b19c8ad51ea4165ebf953a1 87 Hamap MF_00270 30S ribosomal protein S18 [rpsR]. 15 87 22.762 T 14-10-2018 IPR001648 Ribosomal protein S18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1420 72c661e66b19c8ad51ea4165ebf953a1 87 Gene3D G3DSA:4.10.640.10 6 87 1.4E-33 T 14-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1420 72c661e66b19c8ad51ea4165ebf953a1 87 SUPERFAMILY SSF46911 14 86 3.66E-32 T 14-10-2018 IPR036870 Ribosomal protein S18 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0170 926666f3d11c9c480e160dd8abb3de03 736 Pfam PF06832 Penicillin-Binding Protein C-terminus Family 636 717 2.8E-17 T 14-10-2018 IPR009647 Penicillin-binding, C-terminal KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0170 926666f3d11c9c480e160dd8abb3de03 736 Pfam PF00905 Penicillin binding protein transpeptidase domain 304 536 4.4E-16 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Amico_0170 926666f3d11c9c480e160dd8abb3de03 736 SUPERFAMILY SSF56601 211 625 1.52E-86 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Amico_0170 926666f3d11c9c480e160dd8abb3de03 736 Gene3D G3DSA:3.40.710.10 252 610 2.4E-76 T 14-10-2018 Amico_0170 926666f3d11c9c480e160dd8abb3de03 736 Gene3D G3DSA:1.10.3810.10 58 244 2.6E-56 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0170 926666f3d11c9c480e160dd8abb3de03 736 Pfam PF00912 Transglycosylase 66 227 3.7E-50 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0170 926666f3d11c9c480e160dd8abb3de03 736 SUPERFAMILY SSF53955 63 260 1.57E-57 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Amico_0170 926666f3d11c9c480e160dd8abb3de03 736 TIGRFAM TIGR02073 PBP_1c: penicillin-binding protein 1C 41 719 9.8E-179 T 14-10-2018 IPR011815 Penicillin-binding protein 1C GO:0008955|GO:0009252 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_1779 cc7ed7c26c23c4cb038e93e61f3cf5d5 394 Gene3D G3DSA:1.10.3720.10 175 385 8.2E-22 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1779 cc7ed7c26c23c4cb038e93e61f3cf5d5 394 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 204 382 7.7E-25 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_1779 cc7ed7c26c23c4cb038e93e61f3cf5d5 394 SUPERFAMILY SSF161098 182 360 1.05E-24 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1804 601a7bcf255eaa46a68d619f9925c4f7 624 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 102 538 1.9E-99 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1804 601a7bcf255eaa46a68d619f9925c4f7 624 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 7 612 1.3E-210 T 14-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ Amico_0455 2856b00f6f51a26577d550f229aac005 206 Gene3D G3DSA:1.10.10.10 1 64 1.8E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0455 2856b00f6f51a26577d550f229aac005 206 Pfam PF07729 FCD domain 73 193 6.6E-23 T 14-10-2018 IPR011711 GntR, C-terminal Amico_0455 2856b00f6f51a26577d550f229aac005 206 Gene3D G3DSA:1.20.120.530 68 205 1.6E-29 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_0455 2856b00f6f51a26577d550f229aac005 206 Pfam PF00392 Bacterial regulatory proteins, gntR family 3 63 1.5E-14 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0455 2856b00f6f51a26577d550f229aac005 206 SUPERFAMILY SSF48008 68 202 1.44E-25 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_0455 2856b00f6f51a26577d550f229aac005 206 SMART SM00345 5 63 2.9E-12 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0455 2856b00f6f51a26577d550f229aac005 206 SUPERFAMILY SSF46785 3 87 1.82E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0455 2856b00f6f51a26577d550f229aac005 206 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 53 4.1E-5 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0455 2856b00f6f51a26577d550f229aac005 206 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 23 37 4.1E-5 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0455 2856b00f6f51a26577d550f229aac005 206 SMART SM00895 73 194 9.4E-13 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1288 20ceb58625693374c6ffa42ad9077f41 483 TIGRFAM TIGR00933 2a38: potassium uptake protein, TrkH family 87 466 7.0E-102 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 Amico_1288 20ceb58625693374c6ffa42ad9077f41 483 PIRSF PIRSF006247 1 483 2.7E-178 T 14-10-2018 IPR004772 TrkH potassium transport family GO:0015379|GO:0016021|GO:0071805 Amico_1288 20ceb58625693374c6ffa42ad9077f41 483 Pfam PF02386 Cation transport protein 55 477 1.5E-59 T 14-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Amico_0537 0c9efc765bfb1c9fedb032d8e2107b54 86 Gene3D G3DSA:3.30.110.20 1 86 5.4E-37 T 14-10-2018 IPR036882 Alba-like domain superfamily GO:0003676 Amico_0537 0c9efc765bfb1c9fedb032d8e2107b54 86 Pfam PF04232 Stage V sporulation protein S (SpoVS) 2 83 4.4E-40 T 14-10-2018 IPR007347 Sporulation stage V, protein S Amico_0537 0c9efc765bfb1c9fedb032d8e2107b54 86 ProDom PD061837 SPORULATION V STAGE S SPOVS-RELATED SPOVS CELL SEPTATION SPOVS3 RELATED 3 86 6.0E-25 T 14-10-2018 IPR007347 Sporulation stage V, protein S Amico_0221 e008d967e48c9022defa35c7d359d657 345 Gene3D G3DSA:3.40.1190.10 13 222 1.0E-11 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Amico_0221 e008d967e48c9022defa35c7d359d657 345 SUPERFAMILY SSF53623 18 185 1.42E-13 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Amico_0221 e008d967e48c9022defa35c7d359d657 345 Pfam PF08245 Mur ligase middle domain 21 198 4.6E-7 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Amico_0167 bbd298eb22a30cc34b93d6d37816aadf 606 Gene3D G3DSA:1.10.569.10 237 422 3.6E-133 T 14-10-2018 IPR013984 Aldehyde ferredoxin oxidoreductase, domain 2 Amico_0167 bbd298eb22a30cc34b93d6d37816aadf 606 SMART SM00790 1 204 1.9E-92 T 14-10-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Amico_0167 bbd298eb22a30cc34b93d6d37816aadf 606 Pfam PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 230 601 1.2E-125 T 14-10-2018 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Amico_0167 bbd298eb22a30cc34b93d6d37816aadf 606 Pfam PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain 4 204 1.0E-70 T 14-10-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Amico_0167 bbd298eb22a30cc34b93d6d37816aadf 606 SUPERFAMILY SSF48310 211 604 1.7E-113 T 14-10-2018 IPR036021 Aldehyde ferredoxin oxidoreductase-like, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Amico_0167 bbd298eb22a30cc34b93d6d37816aadf 606 Gene3D G3DSA:3.60.9.10 1 206 5.3E-73 T 14-10-2018 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily Amico_0167 bbd298eb22a30cc34b93d6d37816aadf 606 SUPERFAMILY SSF56228 4 205 1.05E-63 T 14-10-2018 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily Amico_0167 bbd298eb22a30cc34b93d6d37816aadf 606 Gene3D G3DSA:1.10.599.10 235 601 3.6E-133 T 14-10-2018 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 Amico_0736 bed5cc639b7217c56e41bcd0755766b1 358 SUPERFAMILY SSF51419 12 229 3.27E-19 T 14-10-2018 IPR029066 PLP-binding barrel Amico_0736 bed5cc639b7217c56e41bcd0755766b1 358 Gene3D G3DSA:3.20.20.10 12 226 2.5E-18 T 14-10-2018 IPR029066 PLP-binding barrel Amico_0736 bed5cc639b7217c56e41bcd0755766b1 358 Pfam PF01168 Alanine racemase, N-terminal domain 12 227 8.5E-16 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0469 f6da36ac876697e5b4366b09ec952e00 232 SUPERFAMILY SSF53335 17 222 1.79E-41 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0469 f6da36ac876697e5b4366b09ec952e00 232 Pfam PF08241 Methyltransferase domain 52 147 4.1E-20 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Amico_0469 f6da36ac876697e5b4366b09ec952e00 232 Gene3D G3DSA:3.40.50.150 3 221 1.6E-38 T 14-10-2018 Amico_1567 aeaafd9f81d2640940592f48a634a9dd 512 SMART SM00382 28 217 4.2E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1567 aeaafd9f81d2640940592f48a634a9dd 512 Pfam PF00005 ABC transporter 20 169 6.2E-25 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1567 aeaafd9f81d2640940592f48a634a9dd 512 SUPERFAMILY SSF52540 4 228 2.5E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1567 aeaafd9f81d2640940592f48a634a9dd 512 SUPERFAMILY SSF52540 256 492 4.05E-45 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1567 aeaafd9f81d2640940592f48a634a9dd 512 ProSitePatterns PS00211 ABC transporters family signature. 404 418 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1567 aeaafd9f81d2640940592f48a634a9dd 512 Pfam PF00005 ABC transporter 274 431 3.7E-15 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1567 aeaafd9f81d2640940592f48a634a9dd 512 Gene3D G3DSA:3.40.50.300 252 497 2.3E-40 T 14-10-2018 Amico_1567 aeaafd9f81d2640940592f48a634a9dd 512 Gene3D G3DSA:3.40.50.300 2 238 3.2E-49 T 14-10-2018 Amico_1722 c1f4160d3aecac16847b8d03360d5f1f 293 SUPERFAMILY SSF51161 99 282 2.99E-42 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Amico_1722 c1f4160d3aecac16847b8d03360d5f1f 293 Pfam PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD 31 82 2.4E-6 T 14-10-2018 IPR020573 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region GO:0009245|GO:0016747 Amico_1722 c1f4160d3aecac16847b8d03360d5f1f 293 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 195 230 4.7E-5 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_1722 c1f4160d3aecac16847b8d03360d5f1f 293 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 116 150 8.4E-6 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_1722 c1f4160d3aecac16847b8d03360d5f1f 293 Gene3D G3DSA:2.160.10.10 85 282 2.3E-43 T 14-10-2018 Amico_1486 fd2b093481fdaa7f583e38f4f498c1f2 333 Gene3D G3DSA:3.40.50.2000 154 333 4.7E-43 T 14-10-2018 Amico_1486 fd2b093481fdaa7f583e38f4f498c1f2 333 Gene3D G3DSA:3.40.50.2000 3 148 1.1E-17 T 14-10-2018 Amico_1486 fd2b093481fdaa7f583e38f4f498c1f2 333 Pfam PF01075 Glycosyltransferase family 9 (heptosyltransferase) 139 304 3.0E-33 T 14-10-2018 IPR002201 Glycosyl transferase, family 9 GO:0016757 Amico_1486 fd2b093481fdaa7f583e38f4f498c1f2 333 SUPERFAMILY SSF53756 10 333 2.6E-72 T 14-10-2018 Amico_0671 67f2607839c717e5c172fb32a62f9fb1 165 SUPERFAMILY SSF103165 10 164 9.68E-66 T 14-10-2018 IPR036902 Ta1353-like superfamily Amico_0671 67f2607839c717e5c172fb32a62f9fb1 165 Gene3D G3DSA:3.40.1520.10 3 165 1.4E-71 T 14-10-2018 IPR036902 Ta1353-like superfamily Amico_0671 67f2607839c717e5c172fb32a62f9fb1 165 Pfam PF04008 Adenosine specific kinase 11 164 4.2E-73 T 14-10-2018 IPR007153 Adenosine specific kinase Amico_1296 40efc964166da10de5088de818b878ec 435 SUPERFAMILY SSF55298 153 295 2.51E-19 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Amico_1296 40efc964166da10de5088de818b878ec 435 SUPERFAMILY SSF55298 301 433 2.04E-13 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Amico_1296 40efc964166da10de5088de818b878ec 435 Pfam PF01042 Endoribonuclease L-PSP 23 144 3.0E-10 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Amico_1296 40efc964166da10de5088de818b878ec 435 Pfam PF01042 Endoribonuclease L-PSP 160 292 3.5E-13 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Amico_1296 40efc964166da10de5088de818b878ec 435 Pfam PF01042 Endoribonuclease L-PSP 317 415 6.5E-8 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Amico_1296 40efc964166da10de5088de818b878ec 435 Gene3D G3DSA:3.30.1330.40 153 293 7.9E-27 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Amico_1296 40efc964166da10de5088de818b878ec 435 SUPERFAMILY SSF55298 19 145 1.21E-15 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Amico_1296 40efc964166da10de5088de818b878ec 435 Gene3D G3DSA:3.30.1330.40 16 152 8.9E-21 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Amico_1296 40efc964166da10de5088de818b878ec 435 Gene3D G3DSA:3.30.1330.40 312 435 4.3E-16 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Amico_0587 32e1793753eb831f010265547b0a84bd 581 SUPERFAMILY SSF56731 107 392 3.92E-86 T 14-10-2018 Amico_0587 32e1793753eb831f010265547b0a84bd 581 Pfam PF01807 CHC2 zinc finger 4 95 1.4E-37 T 14-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Amico_0587 32e1793753eb831f010265547b0a84bd 581 Gene3D G3DSA:3.90.980.10 102 231 7.4E-36 T 14-10-2018 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily Amico_0587 32e1793753eb831f010265547b0a84bd 581 Hamap MF_00974 DNA primase [dnaG]. 1 578 25.568 T 14-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 Amico_0587 32e1793753eb831f010265547b0a84bd 581 SUPERFAMILY SSF57783 3 95 2.64E-36 T 14-10-2018 Amico_0587 32e1793753eb831f010265547b0a84bd 581 SMART SM00493 250 321 1.3E-13 T 14-10-2018 IPR006171 TOPRIM domain Amico_0587 32e1793753eb831f010265547b0a84bd 581 TIGRFAM TIGR01391 dnaG: DNA primase 3 390 1.8E-124 T 14-10-2018 IPR006295 DNA primase, DnaG GO:0003896|GO:0006269 Amico_0587 32e1793753eb831f010265547b0a84bd 581 Gene3D G3DSA:3.40.1360.10 232 356 3.8E-40 T 14-10-2018 Amico_0587 32e1793753eb831f010265547b0a84bd 581 Pfam PF13662 Toprim domain 251 326 6.3E-18 T 14-10-2018 IPR006171 TOPRIM domain Amico_0587 32e1793753eb831f010265547b0a84bd 581 Gene3D G3DSA:3.90.580.10 1 97 5.8E-41 T 14-10-2018 IPR036977 DNA Primase, CHC2-type zinc finger GO:0003677|GO:0006260|GO:0008270 Amico_0587 32e1793753eb831f010265547b0a84bd 581 SMART SM00400 32 86 3.3E-34 T 14-10-2018 IPR002694 Zinc finger, CHC2-type GO:0003677|GO:0003896|GO:0006260|GO:0008270 Amico_0587 32e1793753eb831f010265547b0a84bd 581 PIRSF PIRSF002811 1 581 1.6E-149 T 14-10-2018 IPR030846 DNA primase DnaG, bacteria GO:0003896|GO:0006269|GO:0008270 Amico_0587 32e1793753eb831f010265547b0a84bd 581 Pfam PF08275 DNA primase catalytic core, N-terminal domain 118 242 1.7E-35 T 14-10-2018 IPR013264 DNA primase, catalytic core, N-terminal Amico_1085 467f268eee8cdb3722d8b9554baf391a 87 Hamap MF_01503 UPF0296 protein . 3 85 28.721 T 14-10-2018 IPR007169 Extracellular matrix regulatory protein A Amico_1085 467f268eee8cdb3722d8b9554baf391a 87 ProDom PD063023 UPF0296 YLZA BA4010/GBAA4010/BAS3723 BLI01788/BL02292 BT9727_3613 BC3870 TM1690 CBDBA43 SYC0519_C BCE33L3631 5 76 3.0E-26 T 14-10-2018 IPR007169 Extracellular matrix regulatory protein A Amico_1085 467f268eee8cdb3722d8b9554baf391a 87 Pfam PF04025 Domain of unknown function (DUF370) 5 77 6.9E-37 T 14-10-2018 IPR007169 Extracellular matrix regulatory protein A Amico_0438 78931f9254804057e48192b7307c0ad1 177 ProDom PD007457 TRANSFERASE ADENOSYLTRANSFERASE COBALAMIN ATP:COBIALAMIN ADENOSYLTRANSFERASE PDUO TYPE RELATED ACIDURIA YVQK 12 156 2.0E-23 T 14-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Amico_0438 78931f9254804057e48192b7307c0ad1 177 Gene3D G3DSA:1.20.1200.10 16 177 8.2E-39 T 14-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Amico_0438 78931f9254804057e48192b7307c0ad1 177 SUPERFAMILY SSF89028 6 170 5.1E-41 T 14-10-2018 IPR036451 Cobalamin adenosyltransferase-like superfamily KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Amico_0438 78931f9254804057e48192b7307c0ad1 177 TIGRFAM TIGR00636 PduO_Nterm: ATP:cob(I)alamin adenosyltransferase 7 170 6.6E-39 T 14-10-2018 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Amico_0438 78931f9254804057e48192b7307c0ad1 177 Pfam PF01923 Cobalamin adenosyltransferase 6 161 1.6E-41 T 14-10-2018 IPR016030 Cobalamin adenosyltransferase-like KEGG: 00860+2.5.1.17|Reactome: R-HSA-196741|Reactome: R-HSA-3359471 Amico_1484 847efb265433a72a52eaee1413eb232b 463 SUPERFAMILY SSF56935 126 463 2.22E-7 T 14-10-2018 Amico_1484 847efb265433a72a52eaee1413eb232b 463 Pfam PF07396 Phosphate-selective porin O and P 394 463 9.4E-5 T 14-10-2018 IPR010870 Phosphate-selective porin O/P Amico_1484 847efb265433a72a52eaee1413eb232b 463 Pfam PF00395 S-layer homology domain 25 68 1.3E-12 T 14-10-2018 IPR001119 S-layer homology domain Amico_1539 2249067fdb27be0129042d7cd75e9459 306 SUPERFAMILY SSF55116 5 181 1.15E-59 T 14-10-2018 IPR022384 Formiminotransferase catalytic domain superfamily GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Amico_1539 2249067fdb27be0129042d7cd75e9459 306 Gene3D G3DSA:3.30.70.670 185 303 1.3E-21 T 14-10-2018 IPR037070 Formiminotransferase, C-terminal subdomain superfamily GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1539 2249067fdb27be0129042d7cd75e9459 306 Pfam PF07837 Formiminotransferase domain, N-terminal subdomain 7 180 7.8E-64 T 14-10-2018 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Amico_1539 2249067fdb27be0129042d7cd75e9459 306 SUPERFAMILY SSF55116 185 302 2.88E-32 T 14-10-2018 IPR022384 Formiminotransferase catalytic domain superfamily GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Amico_1539 2249067fdb27be0129042d7cd75e9459 306 SMART SM01222 5 182 6.6E-88 T 14-10-2018 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Amico_1539 2249067fdb27be0129042d7cd75e9459 306 SMART SM01221 184 298 4.8E-41 T 14-10-2018 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1539 2249067fdb27be0129042d7cd75e9459 306 TIGRFAM TIGR02024 FtcD: glutamate formiminotransferase 5 299 4.3E-97 T 14-10-2018 IPR004227 Formiminotransferase catalytic domain GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1539 2249067fdb27be0129042d7cd75e9459 306 Gene3D G3DSA:3.30.990.10 3 182 2.0E-59 T 14-10-2018 IPR037064 Formiminotransferase, N-terminal subdomain superfamily GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Amico_1539 2249067fdb27be0129042d7cd75e9459 306 Pfam PF02971 Formiminotransferase domain 185 285 1.1E-13 T 14-10-2018 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1564 592ff9ad7c1ca8284ef852c1f4713588 678 Gene3D G3DSA:3.20.70.20 134 676 7.8E-116 T 14-10-2018 Amico_1564 592ff9ad7c1ca8284ef852c1f4713588 678 Pfam PF13597 Anaerobic ribonucleoside-triphosphate reductase 123 672 2.1E-179 T 14-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Amico_1564 592ff9ad7c1ca8284ef852c1f4713588 678 Pfam PF03477 ATP cone domain 4 94 7.2E-21 T 14-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Amico_1564 592ff9ad7c1ca8284ef852c1f4713588 678 SUPERFAMILY SSF51998 124 673 7.02E-155 T 14-10-2018 Amico_1564 592ff9ad7c1ca8284ef852c1f4713588 678 TIGRFAM TIGR02487 NrdD: anaerobic ribonucleoside-triphosphate reductase 122 668 7.3E-155 T 14-10-2018 IPR012833 Ribonucleoside-triphosphate reductase, anaerobic GO:0006260|GO:0008998|GO:0016491|GO:0055114 KEGG: 00230+1.1.98.6|KEGG: 00240+1.1.98.6|MetaCyc: PWY-7187|MetaCyc: PWY-7220|MetaCyc: PWY-7222 Amico_1014 02f565104522d10d40394443274a9640 294 SUPERFAMILY SSF56349 110 284 2.38E-48 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Amico_1014 02f565104522d10d40394443274a9640 294 Gene3D G3DSA:1.10.150.130 6 100 1.3E-19 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal Amico_1014 02f565104522d10d40394443274a9640 294 Gene3D G3DSA:1.10.443.10 112 288 3.9E-55 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Amico_1014 02f565104522d10d40394443274a9640 294 Pfam PF00589 Phage integrase family 114 279 1.2E-41 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Amico_1014 02f565104522d10d40394443274a9640 294 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 10 91 2.6E-15 T 14-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Amico_1014 02f565104522d10d40394443274a9640 294 SUPERFAMILY SSF47823 7 97 1.47E-17 T 14-10-2018 Amico_0369 651e044339344ac291e19f57c19f55e8 403 PIRSF PIRSF006392 14 399 2.0E-110 T 14-10-2018 IPR004456 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GO:0003824|GO:0046537 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0369 651e044339344ac291e19f57c19f55e8 403 Gene3D G3DSA:3.30.70.2130 92 233 4.0E-89 T 14-10-2018 Amico_0369 651e044339344ac291e19f57c19f55e8 403 SUPERFAMILY SSF53649 17 362 2.43E-28 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Amico_0369 651e044339344ac291e19f57c19f55e8 403 Gene3D G3DSA:3.40.720.10 20 388 4.0E-89 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Amico_0369 651e044339344ac291e19f57c19f55e8 403 Pfam PF01676 Metalloenzyme superfamily 17 392 1.7E-28 T 14-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 Amico_0369 651e044339344ac291e19f57c19f55e8 403 TIGRFAM TIGR00306 apgM: phosphoglycerate mutase (2,3-diphosphoglycerate-independent), archaeal form 20 392 1.3E-81 T 14-10-2018 IPR004456 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GO:0003824|GO:0046537 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0369 651e044339344ac291e19f57c19f55e8 403 Pfam PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 51 223 4.3E-47 T 14-10-2018 IPR004456 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GO:0003824|GO:0046537 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0010 040d59cd1cb7901a833d5a3cecf20630 326 SMART SM00859 2 118 7.2E-36 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Amico_0010 040d59cd1cb7901a833d5a3cecf20630 326 Gene3D G3DSA:3.30.360.10 125 301 1.7E-112 T 14-10-2018 Amico_0010 040d59cd1cb7901a833d5a3cecf20630 326 Pfam PF02774 Semialdehyde dehydrogenase, dimerisation domain 139 303 9.7E-38 T 14-10-2018 IPR012280 Semialdehyde dehydrogenase, dimerisation domain GO:0005737|GO:0008652|GO:0016620|GO:0046983 KEGG: 00220+1.2.1.38|MetaCyc: PWY-5154|MetaCyc: PWY-7400 Amico_0010 040d59cd1cb7901a833d5a3cecf20630 326 SUPERFAMILY SSF51735 1 154 4.45E-45 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0010 040d59cd1cb7901a833d5a3cecf20630 326 Gene3D G3DSA:3.40.50.720 3 315 1.7E-112 T 14-10-2018 Amico_0010 040d59cd1cb7901a833d5a3cecf20630 326 Pfam PF01118 Semialdehyde dehydrogenase, NAD binding domain 2 115 4.3E-26 T 14-10-2018 IPR000534 Semialdehyde dehydrogenase, NAD-binding GO:0016620|GO:0051287|GO:0055114 Amico_0010 040d59cd1cb7901a833d5a3cecf20630 326 PIRSF PIRSF000148 1 322 9.0E-105 T 14-10-2018 Amico_0010 040d59cd1cb7901a833d5a3cecf20630 326 TIGRFAM TIGR01296 asd_B: aspartate-semialdehyde dehydrogenase 2 315 8.0E-101 T 14-10-2018 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type GO:0004073|GO:0009086|GO:0009088|GO:0009089|GO:0009097|GO:0050661|GO:0055114 KEGG: 00260+1.2.1.11|KEGG: 00261+1.2.1.11|KEGG: 00270+1.2.1.11|KEGG: 00300+1.2.1.11|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|MetaCyc: PWY-6160|MetaCyc: PWY-6559|MetaCyc: PWY-6562|MetaCyc: PWY-7153|MetaCyc: PWY-7977 Amico_0010 040d59cd1cb7901a833d5a3cecf20630 326 SUPERFAMILY SSF55347 126 305 9.52E-57 T 14-10-2018 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 ProSitePatterns PS00074 Glu / Leu / Phe / Val dehydrogenases active site. 105 118 - T 14-10-2018 IPR033524 Leu/Phe/Val dehydrogenases active site Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 PIRSF PIRSF000185 7 426 4.7E-150 T 14-10-2018 IPR014362 Glutamate dehydrogenase GO:0016639|GO:0055114 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 SUPERFAMILY SSF53223 13 188 5.12E-57 T 14-10-2018 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 Pfam PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase 187 423 1.1E-68 T 14-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 177 199 4.8E-31 T 14-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 351 362 4.8E-31 T 14-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 219 239 4.8E-31 T 14-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 PRINTS PR00082 Glutamate/leucine/phenylalanine/valine dehydrogenase signature 97 111 4.8E-31 T 14-10-2018 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 Gene3D G3DSA:3.40.50.10860 42 185 4.9E-57 T 14-10-2018 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 Pfam PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain 41 167 3.5E-49 T 14-10-2018 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 Gene3D G3DSA:3.40.50.720 186 425 4.7E-82 T 14-10-2018 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 SMART SM00839 188 423 5.6E-92 T 14-10-2018 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal GO:0006520|GO:0016491|GO:0055114 Reactome: R-HSA-2151201|Reactome: R-HSA-70614 Amico_0374 73bbbea7aba422f1c21eff55182aadb8 426 SUPERFAMILY SSF51735 187 425 9.29E-74 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1229 d299e575456b4d1fa0a921c1554a0b20 178 Gene3D G3DSA:2.20.28.10 134 178 1.7E-18 T 14-10-2018 Amico_1229 d299e575456b4d1fa0a921c1554a0b20 178 Gene3D G3DSA:1.20.1260.10 1 133 2.6E-50 T 14-10-2018 IPR012347 Ferritin-like Amico_1229 d299e575456b4d1fa0a921c1554a0b20 178 SUPERFAMILY SSF57802 137 177 3.3E-11 T 14-10-2018 Amico_1229 d299e575456b4d1fa0a921c1554a0b20 178 SUPERFAMILY SSF47240 3 133 1.89E-39 T 14-10-2018 IPR009078 Ferritin-like superfamily Amico_1229 d299e575456b4d1fa0a921c1554a0b20 178 Pfam PF02915 Rubrerythrin 11 126 3.5E-23 T 14-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Amico_1468 173c64687b36fbfbbf39d265e55d1a42 163 ProSitePatterns PS00829 Prokaryotic transcription elongation factors signature 1. 23 54 - T 14-10-2018 IPR018151 Transcription elongation factor, GreA/GreB, conserved site GO:0003677|GO:0032784 Amico_1468 173c64687b36fbfbbf39d265e55d1a42 163 Gene3D G3DSA:3.10.50.30 82 162 2.2E-25 T 14-10-2018 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily GO:0003677|GO:0032784 Amico_1468 173c64687b36fbfbbf39d265e55d1a42 163 PIRSF PIRSF006092 7 162 5.6E-50 T 14-10-2018 IPR023459 Transcription elongation factor GreA/GreB family GO:0070063 Amico_1468 173c64687b36fbfbbf39d265e55d1a42 163 TIGRFAM TIGR01462 greA: transcription elongation factor GreA 11 160 3.1E-52 T 14-10-2018 IPR006359 Transcription elongation factor GreA GO:0003677|GO:0032784 Amico_1468 173c64687b36fbfbbf39d265e55d1a42 163 SUPERFAMILY SSF46557 11 84 2.88E-23 T 14-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Amico_1468 173c64687b36fbfbbf39d265e55d1a42 163 SUPERFAMILY SSF54534 86 160 3.53E-20 T 14-10-2018 Amico_1468 173c64687b36fbfbbf39d265e55d1a42 163 Hamap MF_00105 Transcription elongation factor GreA [greA]. 8 161 27.493 T 14-10-2018 IPR028624 Transcription elongation factor GreA/GreB GO:0003677|GO:0032784|GO:0070063 Amico_1468 173c64687b36fbfbbf39d265e55d1a42 163 Gene3D G3DSA:1.10.287.180 9 81 7.8E-26 T 14-10-2018 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily GO:0003677|GO:0032784 Amico_1468 173c64687b36fbfbbf39d265e55d1a42 163 Pfam PF03449 Transcription elongation factor, N-terminal 11 80 8.4E-27 T 14-10-2018 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal GO:0003677|GO:0032784 Amico_1468 173c64687b36fbfbbf39d265e55d1a42 163 Pfam PF01272 Transcription elongation factor, GreA/GreB, C-term 89 161 5.9E-25 T 14-10-2018 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal GO:0003677|GO:0032784 Amico_0267 eb5ee676e85ba1ef75bd96eaf89e1da0 519 Pfam PF01039 Carboxyl transferase domain 32 516 2.1E-187 T 14-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Amico_0267 eb5ee676e85ba1ef75bd96eaf89e1da0 519 Gene3D G3DSA:3.90.226.10 263 519 2.4E-91 T 14-10-2018 Amico_0267 eb5ee676e85ba1ef75bd96eaf89e1da0 519 SUPERFAMILY SSF52096 222 499 6.91E-89 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Amico_0267 eb5ee676e85ba1ef75bd96eaf89e1da0 519 Gene3D G3DSA:3.90.226.10 5 260 1.5E-88 T 14-10-2018 Amico_0267 eb5ee676e85ba1ef75bd96eaf89e1da0 519 SUPERFAMILY SSF52096 6 259 9.64E-75 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Amico_0886 eb5ee676e85ba1ef75bd96eaf89e1da0 519 Pfam PF01039 Carboxyl transferase domain 32 516 2.1E-187 T 14-10-2018 IPR034733 Acetyl-CoA carboxylase MetaCyc: PWY-4381|MetaCyc: PWY-5743|MetaCyc: PWY-5744|MetaCyc: PWY-5789|MetaCyc: PWY-6722|Reactome: R-HSA-196780 Amico_0886 eb5ee676e85ba1ef75bd96eaf89e1da0 519 Gene3D G3DSA:3.90.226.10 263 519 2.4E-91 T 14-10-2018 Amico_0886 eb5ee676e85ba1ef75bd96eaf89e1da0 519 SUPERFAMILY SSF52096 222 499 6.91E-89 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Amico_0886 eb5ee676e85ba1ef75bd96eaf89e1da0 519 Gene3D G3DSA:3.90.226.10 5 260 1.5E-88 T 14-10-2018 Amico_0886 eb5ee676e85ba1ef75bd96eaf89e1da0 519 SUPERFAMILY SSF52096 6 259 9.64E-75 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Amico_0658 d9ecd44c7e96c4158fbc653896523ca5 277 Pfam PF00005 ABC transporter 24 171 3.8E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0658 d9ecd44c7e96c4158fbc653896523ca5 277 ProSitePatterns PS00211 ABC transporters family signature. 143 157 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0658 d9ecd44c7e96c4158fbc653896523ca5 277 Gene3D G3DSA:3.40.50.300 6 275 5.9E-69 T 14-10-2018 Amico_0658 d9ecd44c7e96c4158fbc653896523ca5 277 SMART SM00382 33 226 2.2E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0658 d9ecd44c7e96c4158fbc653896523ca5 277 SUPERFAMILY SSF52540 8 233 2.61E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0658 d9ecd44c7e96c4158fbc653896523ca5 277 TIGRFAM TIGR04520 ECF_ATPase_1: energy-coupling factor transporter ATPase 9 274 2.5E-97 T 14-10-2018 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 Amico_1173 1453427d3ff3ef02b7d070aac28d49c8 256 Gene3D G3DSA:3.40.190.10 36 251 1.4E-66 T 14-10-2018 Amico_1173 1453427d3ff3ef02b7d070aac28d49c8 256 SUPERFAMILY SSF53850 1 253 3.44E-64 T 14-10-2018 Amico_1173 1453427d3ff3ef02b7d070aac28d49c8 256 Gene3D G3DSA:3.40.190.10 119 212 1.4E-66 T 14-10-2018 Amico_1173 1453427d3ff3ef02b7d070aac28d49c8 256 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 252 4.5E-59 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_1173 1453427d3ff3ef02b7d070aac28d49c8 256 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 56 69 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site Amico_1173 1453427d3ff3ef02b7d070aac28d49c8 256 SMART SM00062 33 255 2.5E-60 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_1252 abc69809570539154196f109c5047a4d 330 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 5 319 4.9E-57 T 14-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Amico_1252 abc69809570539154196f109c5047a4d 330 SUPERFAMILY SSF51735 3 328 7.49E-67 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1252 abc69809570539154196f109c5047a4d 330 Gene3D G3DSA:3.30.1780.10 6 323 4.7E-83 T 14-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 Amico_1252 abc69809570539154196f109c5047a4d 330 Gene3D G3DSA:3.40.50.720 131 301 4.7E-83 T 14-10-2018 Amico_1252 abc69809570539154196f109c5047a4d 330 PIRSF PIRSF001439 1 329 5.6E-62 T 14-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Amico_0816 73289c7f843aca104eda1cfc59e0e617 315 ProSitePatterns PS01347 MraY family signature 1. 46 58 - T 14-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0816 73289c7f843aca104eda1cfc59e0e617 315 TIGRFAM TIGR00445 mraY: phospho-N-acetylmuramoyl-pentapeptide-transferase 21 303 2.3E-57 T 14-10-2018 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase GO:0008963|GO:0016020 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0816 73289c7f843aca104eda1cfc59e0e617 315 Pfam PF00953 Glycosyl transferase family 4 81 238 2.1E-29 T 14-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Amico_0816 73289c7f843aca104eda1cfc59e0e617 315 Pfam PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 46 58 5.5E-5 T 14-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0816 73289c7f843aca104eda1cfc59e0e617 315 ProSitePatterns PS01348 MraY family signature 2. 161 172 - T 14-10-2018 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0649 9996182bdb27459bdbb897d9fc22fffe 258 Pfam PF00557 Metallopeptidase family M24 12 246 7.3E-50 T 14-10-2018 IPR000994 Peptidase M24 Amico_0649 9996182bdb27459bdbb897d9fc22fffe 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 166 178 1.4E-20 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Amico_0649 9996182bdb27459bdbb897d9fc22fffe 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 73 86 1.4E-20 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Amico_0649 9996182bdb27459bdbb897d9fc22fffe 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 96 112 1.4E-20 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Amico_0649 9996182bdb27459bdbb897d9fc22fffe 258 PRINTS PR00599 Methionine aminopeptidase-1 signature 197 209 1.4E-20 T 14-10-2018 IPR001714 Peptidase M24, methionine aminopeptidase MetaCyc: PWY-7799|MetaCyc: PWY-7800 Amico_0649 9996182bdb27459bdbb897d9fc22fffe 258 Gene3D G3DSA:3.90.230.10 1 257 2.5E-94 T 14-10-2018 Amico_0649 9996182bdb27459bdbb897d9fc22fffe 258 TIGRFAM TIGR00500 met_pdase_I: methionine aminopeptidase, type I 2 253 3.0E-87 T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Amico_0649 9996182bdb27459bdbb897d9fc22fffe 258 ProSitePatterns PS00680 Methionine aminopeptidase subfamily 1 signature. 172 190 - T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Amico_0649 9996182bdb27459bdbb897d9fc22fffe 258 SUPERFAMILY SSF55920 1 254 2.88E-81 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like Amico_0649 9996182bdb27459bdbb897d9fc22fffe 258 Hamap MF_01974 Methionine aminopeptidase [map]. 2 255 38.732 T 14-10-2018 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 GO:0004177|GO:0006508|GO:0008235 MetaCyc: PWY-7799|MetaCyc: PWY-7800 Amico_1674 8dbec53f53364f1b4e707f8208550555 424 PIRSF PIRSF006066 1 424 9.4E-151 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1674 8dbec53f53364f1b4e707f8208550555 424 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 18 421 9.0E-134 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1674 8dbec53f53364f1b4e707f8208550555 424 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 416 1.1E-117 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_0815 c2d6f71c144bbcde81d89ccc2b2fb693 468 TIGRFAM TIGR01143 murF: UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase 33 461 5.0E-92 T 14-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_0815 c2d6f71c144bbcde81d89ccc2b2fb693 468 SUPERFAMILY SSF63418 5 104 1.57E-17 T 14-10-2018 IPR035911 MurE/MurF, N-terminal Amico_0815 c2d6f71c144bbcde81d89ccc2b2fb693 468 Gene3D G3DSA:3.40.1190.10 90 323 4.1E-38 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Amico_0815 c2d6f71c144bbcde81d89ccc2b2fb693 468 Pfam PF08245 Mur ligase middle domain 115 261 4.8E-24 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Amico_0815 c2d6f71c144bbcde81d89ccc2b2fb693 468 Gene3D G3DSA:3.90.190.20 327 468 5.2E-34 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Amico_0815 c2d6f71c144bbcde81d89ccc2b2fb693 468 SUPERFAMILY SSF53623 112 323 4.97E-33 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Amico_0815 c2d6f71c144bbcde81d89ccc2b2fb693 468 SUPERFAMILY SSF53244 327 460 8.47E-28 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Amico_0815 c2d6f71c144bbcde81d89ccc2b2fb693 468 Pfam PF02875 Mur ligase family, glutamate ligase domain 327 405 1.8E-12 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Amico_0815 c2d6f71c144bbcde81d89ccc2b2fb693 468 Gene3D G3DSA:3.40.1390.10 25 78 6.0E-17 T 14-10-2018 Amico_0815 c2d6f71c144bbcde81d89ccc2b2fb693 468 Pfam PF01225 Mur ligase family, catalytic domain 29 74 5.2E-9 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Amico_0815 c2d6f71c144bbcde81d89ccc2b2fb693 468 Hamap MF_02019 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase [murF]. 6 463 27.886 T 14-10-2018 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase GO:0005524|GO:0005737|GO:0047480|GO:0071555 KEGG: 00300+6.3.2.10|KEGG: 00550+6.3.2.10|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_1422 6af19cdf1776acb1b18366cd26c720c6 94 SUPERFAMILY SSF54995 2 93 1.57E-27 T 14-10-2018 IPR035980 Ribosomal protein S6 superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1422 6af19cdf1776acb1b18366cd26c720c6 94 Hamap MF_00360 30S ribosomal protein S6 [rpsF]. 1 93 18.85 T 14-10-2018 IPR020814 Ribosomal protein S6, plastid/chloroplast GO:0003735|GO:0005840|GO:0006412|GO:0019843 Amico_1422 6af19cdf1776acb1b18366cd26c720c6 94 TIGRFAM TIGR00166 S6: ribosomal protein bS6 1 92 2.5E-23 T 14-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1422 6af19cdf1776acb1b18366cd26c720c6 94 Gene3D G3DSA:3.30.70.60 1 94 2.8E-29 T 14-10-2018 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 Amico_1422 6af19cdf1776acb1b18366cd26c720c6 94 Pfam PF01250 Ribosomal protein S6 4 90 1.9E-24 T 14-10-2018 IPR000529 Ribosomal protein S6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0332 b21d768238a78dd784301176a02e8a9f 121 Pfam PF04126 Cyclophilin-like 1 119 3.9E-44 T 14-10-2018 IPR025658 Cyclophilin TM1367-like domain Amico_0332 b21d768238a78dd784301176a02e8a9f 121 PIRSF PIRSF006456 1 121 1.0E-37 T 14-10-2018 IPR007256 Protein of unknown function DUF369 Amico_0332 b21d768238a78dd784301176a02e8a9f 121 SUPERFAMILY SSF50891 1 120 1.71E-31 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily Amico_0332 b21d768238a78dd784301176a02e8a9f 121 Gene3D G3DSA:2.40.100.20 1 121 6.2E-44 T 14-10-2018 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 PRINTS PR00477 Phosphoglycerate kinase family signature 312 337 2.0E-79 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 PRINTS PR00477 Phosphoglycerate kinase family signature 167 189 2.0E-79 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 PRINTS PR00477 Phosphoglycerate kinase family signature 31 53 2.0E-79 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 PRINTS PR00477 Phosphoglycerate kinase family signature 190 209 2.0E-79 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 PRINTS PR00477 Phosphoglycerate kinase family signature 371 388 2.0E-79 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 PRINTS PR00477 Phosphoglycerate kinase family signature 10 26 2.0E-79 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 PRINTS PR00477 Phosphoglycerate kinase family signature 109 124 2.0E-79 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 PRINTS PR00477 Phosphoglycerate kinase family signature 348 359 2.0E-79 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 PRINTS PR00477 Phosphoglycerate kinase family signature 137 159 2.0E-79 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 Hamap MF_00145 Phosphoglycerate kinase [pgk]. 5 395 38.565 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 PIRSF PIRSF000724 1 397 1.6E-140 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 ProSitePatterns PS00111 Phosphoglycerate kinase signature. 15 25 - T 14-10-2018 IPR015911 Phosphoglycerate kinase, conserved site GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 Gene3D G3DSA:3.40.50.1260 169 385 3.3E-149 T 14-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 Pfam PF00162 Phosphoglycerate kinase 10 385 1.3E-147 T 14-10-2018 IPR001576 Phosphoglycerate kinase GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 SUPERFAMILY SSF53748 6 393 4.71E-144 T 14-10-2018 IPR036043 Phosphoglycerate kinase superfamily GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0835 9700ec6e26738e1bfef99c9fdff60333 397 Gene3D G3DSA:3.40.50.1260 10 392 3.3E-149 T 14-10-2018 IPR015824 Phosphoglycerate kinase, N-terminal GO:0004618|GO:0006096 KEGG: 00010+2.7.2.3|KEGG: 00710+2.7.2.3|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0856 3c169313e590c84af9a2d91f53090d0e 460 PIRSF PIRSF004919 1 454 1.7E-122 T 14-10-2018 IPR025502 TldD Amico_0856 3c169313e590c84af9a2d91f53090d0e 460 SUPERFAMILY SSF111283 7 452 2.09E-107 T 14-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 Amico_0856 3c169313e590c84af9a2d91f53090d0e 460 Pfam PF01523 Putative modulator of DNA gyrase 20 307 1.8E-58 T 14-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Amico_0436 a3efcad9cda394b87a676908883497fe 424 SUPERFAMILY SSF48019 247 417 7.37E-63 T 14-10-2018 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal GO:0003677|GO:0006260 Reactome: R-HSA-110312|Reactome: R-HSA-110314|Reactome: R-HSA-110320|Reactome: R-HSA-174411|Reactome: R-HSA-5651801|Reactome: R-HSA-5655862|Reactome: R-HSA-5656121|Reactome: R-HSA-5656169|Reactome: R-HSA-5685942|Reactome: R-HSA-5696397|Reactome: R-HSA-5696400|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-69091 Amico_0436 a3efcad9cda394b87a676908883497fe 424 Gene3D G3DSA:3.40.50.300 2 160 6.5E-39 T 14-10-2018 Amico_0436 a3efcad9cda394b87a676908883497fe 424 Pfam PF16193 AAA C-terminal domain 185 261 2.8E-21 T 14-10-2018 IPR032423 AAA C-terminal domain Amico_0436 a3efcad9cda394b87a676908883497fe 424 SMART SM00382 44 161 6.2E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0436 a3efcad9cda394b87a676908883497fe 424 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 49 156 1.7E-12 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_0436 a3efcad9cda394b87a676908883497fe 424 Pfam PF12002 MgsA AAA+ ATPase C terminal 262 414 4.9E-57 T 14-10-2018 IPR021886 MgsA AAA+ ATPase C-terminal Amico_0436 a3efcad9cda394b87a676908883497fe 424 Gene3D G3DSA:1.10.3710.10 342 423 5.1E-12 T 14-10-2018 Amico_0436 a3efcad9cda394b87a676908883497fe 424 Gene3D G3DSA:1.10.8.60 161 231 6.8E-16 T 14-10-2018 Amico_0436 a3efcad9cda394b87a676908883497fe 424 Gene3D G3DSA:1.20.272.10 236 339 1.5E-43 T 14-10-2018 Amico_0436 a3efcad9cda394b87a676908883497fe 424 SUPERFAMILY SSF52540 6 230 6.65E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1890 148efdf4111c8890d0df4eecf9500c4a 322 ProSitePatterns PS00211 ABC transporters family signature. 133 147 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1890 148efdf4111c8890d0df4eecf9500c4a 322 Gene3D G3DSA:3.40.50.300 1 237 7.7E-74 T 14-10-2018 Amico_1890 148efdf4111c8890d0df4eecf9500c4a 322 SMART SM00382 27 210 3.8E-18 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1890 148efdf4111c8890d0df4eecf9500c4a 322 Pfam PF08402 TOBE domain 248 320 2.5E-5 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Amico_1890 148efdf4111c8890d0df4eecf9500c4a 322 Pfam PF00005 ABC transporter 19 160 1.6E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1890 148efdf4111c8890d0df4eecf9500c4a 322 SUPERFAMILY SSF52540 3 240 1.69E-82 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1890 148efdf4111c8890d0df4eecf9500c4a 322 SUPERFAMILY SSF50331 241 321 9.64E-9 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Amico_1726 7f44d663fab9e6ec2ff48e00ae8753c8 440 SUPERFAMILY SSF48179 211 308 2.89E-32 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Amico_1726 7f44d663fab9e6ec2ff48e00ae8753c8 440 Pfam PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain 330 424 2.7E-20 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Amico_1726 7f44d663fab9e6ec2ff48e00ae8753c8 440 SMART SM00984 329 425 1.4E-26 T 14-10-2018 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Amico_1726 7f44d663fab9e6ec2ff48e00ae8753c8 440 Pfam PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain 211 302 6.9E-31 T 14-10-2018 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Amico_1726 7f44d663fab9e6ec2ff48e00ae8753c8 440 SUPERFAMILY SSF51735 15 203 2.16E-47 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1726 7f44d663fab9e6ec2ff48e00ae8753c8 440 PIRSF PIRSF500136 3 437 3.4E-161 T 14-10-2018 IPR028359 UDP-N-acetyl-D-mannosamine/glucosamine dehydrogenase GO:0000271|GO:0016628|GO:0055114 Amico_1726 7f44d663fab9e6ec2ff48e00ae8753c8 440 Gene3D G3DSA:3.40.50.720 211 431 2.4E-65 T 14-10-2018 Amico_1726 7f44d663fab9e6ec2ff48e00ae8753c8 440 Gene3D G3DSA:3.40.50.720 1 208 2.5E-67 T 14-10-2018 Amico_1726 7f44d663fab9e6ec2ff48e00ae8753c8 440 Pfam PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain 14 191 6.2E-45 T 14-10-2018 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-173599 Amico_1726 7f44d663fab9e6ec2ff48e00ae8753c8 440 TIGRFAM TIGR03026 NDP-sugDHase: nucleotide sugar dehydrogenase 15 421 7.8E-135 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Amico_1726 7f44d663fab9e6ec2ff48e00ae8753c8 440 SUPERFAMILY SSF52413 315 424 3.92E-26 T 14-10-2018 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily Reactome: R-HSA-173599 Amico_1726 7f44d663fab9e6ec2ff48e00ae8753c8 440 PIRSF PIRSF000124 13 436 4.6E-69 T 14-10-2018 IPR017476 UDP-glucose/GDP-mannose dehydrogenase GO:0016616|GO:0055114 Reactome: R-HSA-173599 Amico_0766 f6854506af54cbdf63b3bbadfb46028d 532 Pfam PF00437 Type II/IV secretion system protein 175 438 1.1E-72 T 14-10-2018 IPR001482 Type II/IV secretion system protein Amico_0766 f6854506af54cbdf63b3bbadfb46028d 532 Gene3D G3DSA:3.40.50.300 275 526 8.7E-96 T 14-10-2018 Amico_0766 f6854506af54cbdf63b3bbadfb46028d 532 ProSitePatterns PS00662 Bacterial type II secretion system protein E signature. 367 381 - T 14-10-2018 IPR001482 Type II/IV secretion system protein Amico_0766 f6854506af54cbdf63b3bbadfb46028d 532 SMART SM00382 300 423 1.3E-5 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0766 f6854506af54cbdf63b3bbadfb46028d 532 SUPERFAMILY SSF52540 157 523 8.58E-93 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0766 f6854506af54cbdf63b3bbadfb46028d 532 Gene3D G3DSA:3.30.450.90 147 272 1.3E-40 T 14-10-2018 Amico_1391 05263369ba9fceefd9cfe62ae6350c84 383 Gene3D G3DSA:3.40.718.10 110 236 1.9E-11 T 14-10-2018 Amico_1391 05263369ba9fceefd9cfe62ae6350c84 383 Pfam PF02504 Fatty acid synthesis protein 28 363 1.7E-34 T 14-10-2018 IPR003664 Fatty acid synthesis PlsX protein GO:0003824|GO:0006633|GO:0016747 Amico_1391 05263369ba9fceefd9cfe62ae6350c84 383 SUPERFAMILY SSF53659 27 235 2.73E-19 T 14-10-2018 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 Gene3D G3DSA:3.40.50.740 281 488 2.6E-12 T 14-10-2018 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 SUPERFAMILY SSF54292 4 76 1.14E-17 T 14-10-2018 IPR036010 2Fe-2S ferredoxin-like superfamily GO:0009055|GO:0051536 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 SUPERFAMILY SSF53706 223 648 7.59E-58 T 14-10-2018 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 SMART SM00929 85 125 1.8E-12 T 14-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 SUPERFAMILY SSF54862 77 215 1.97E-32 T 14-10-2018 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 SMART SM00926 222 277 1.0E-5 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 Gene3D G3DSA:3.10.20.740 3 125 7.6E-40 T 14-10-2018 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 Pfam PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region 86 124 4.1E-12 T 14-10-2018 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 Gene3D G3DSA:3.40.50.740 541 672 9.0E-13 T 14-10-2018 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 ProSitePatterns PS00641 Respiratory-chain NADH dehydrogenase 75 Kd subunit signature 1. 33 50 - T 14-10-2018 IPR000283 NADH:ubiquinone oxidoreductase, 75kDa subunit, conserved site GO:0008137|GO:0016020|GO:0042773|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 Pfam PF13510 2Fe-2S iron-sulfur cluster binding domain 3 78 1.8E-20 T 14-10-2018 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 192 203 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 Gene3D G3DSA:2.20.25.90 223 271 2.7E-10 T 14-10-2018 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 Gene3D G3DSA:3.30.70.20 130 210 1.2E-18 T 14-10-2018 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 Pfam PF00384 Molybdopterin oxidoreductase 560 638 6.3E-8 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 Pfam PF00384 Molybdopterin oxidoreductase 279 498 9.2E-15 T 14-10-2018 IPR006656 Molybdopterin oxidoreductase GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 Pfam PF13187 4Fe-4S dicluster domain 147 207 7.4E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_1555 7b290d1f09c94e92c6a8b549f64b16a5 674 Pfam PF04879 Molybdopterin oxidoreductase Fe4S4 domain 223 268 5.1E-9 T 14-10-2018 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain GO:0016491|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1238 9caf67d1701605116705cefee80cbd2b 476 Pfam PF02127 Aminopeptidase I zinc metalloprotease (M18) 43 472 5.2E-79 T 14-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Amico_1238 9caf67d1701605116705cefee80cbd2b 476 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 440 455 8.4E-29 T 14-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Amico_1238 9caf67d1701605116705cefee80cbd2b 476 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 301 319 8.4E-29 T 14-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Amico_1238 9caf67d1701605116705cefee80cbd2b 476 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 141 161 8.4E-29 T 14-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Amico_1238 9caf67d1701605116705cefee80cbd2b 476 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 177 194 8.4E-29 T 14-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Amico_1238 9caf67d1701605116705cefee80cbd2b 476 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 346 362 8.4E-29 T 14-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Amico_1238 9caf67d1701605116705cefee80cbd2b 476 PRINTS PR00932 Aminopeptidase I zinc metalloprotease (M18) signature 108 124 8.4E-29 T 14-10-2018 IPR001948 Peptidase M18 GO:0004177|GO:0006508|GO:0008270 Amico_1238 9caf67d1701605116705cefee80cbd2b 476 SUPERFAMILY SSF53187 20 474 2.17E-96 T 14-10-2018 Amico_1238 9caf67d1701605116705cefee80cbd2b 476 SUPERFAMILY SSF101821 120 251 9.15E-33 T 14-10-2018 Amico_1238 9caf67d1701605116705cefee80cbd2b 476 Gene3D G3DSA:2.30.250.10 119 256 6.1E-147 T 14-10-2018 IPR023358 Peptidase M18, domain 2 GO:0004177 Amico_1238 9caf67d1701605116705cefee80cbd2b 476 Gene3D G3DSA:3.40.630.10 54 464 6.1E-147 T 14-10-2018 Amico_1419 532855afa480ce2fef3af3ef6997e538 317 Pfam PF09991 Predicted membrane protein (DUF2232) 16 306 2.4E-53 T 14-10-2018 IPR018710 Protein of unknown function DUF2232 Amico_1886 34326638737bc521d060b9ab54949c42 677 Pfam PF17391 Urocanase N-terminal domain 90 215 1.8E-51 T 14-10-2018 IPR035400 Urocanase, N-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1886 34326638737bc521d060b9ab54949c42 677 Gene3D G3DSA:3.40.50.10730 219 441 2.9E-212 T 14-10-2018 IPR038364 Urocanase, central domain superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1886 34326638737bc521d060b9ab54949c42 677 Pfam PF01175 Urocanase Rossmann-like domain 218 441 1.4E-82 T 14-10-2018 IPR035085 Urocanase, Rossmann-like domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1886 34326638737bc521d060b9ab54949c42 677 Gene3D G3DSA:3.40.1770.10 98 638 2.9E-212 T 14-10-2018 Amico_1886 34326638737bc521d060b9ab54949c42 677 Pfam PF17392 Urocanase C-terminal domain 446 642 5.3E-82 T 14-10-2018 IPR035401 Urocanase, C-terminal domain KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1886 34326638737bc521d060b9ab54949c42 677 TIGRFAM TIGR01228 hutU: urocanate hydratase 102 645 1.9E-130 T 14-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1886 34326638737bc521d060b9ab54949c42 677 Hamap MF_00577 Urocanate hydratase [hutU]. 60 659 42.792 T 14-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1886 34326638737bc521d060b9ab54949c42 677 PIRSF PIRSF001423 74 655 5.9E-181 T 14-10-2018 IPR023637 Urocanase GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1886 34326638737bc521d060b9ab54949c42 677 ProSitePatterns PS01233 Urocanase signature. 539 554 - T 14-10-2018 IPR023636 Urocanase conserved site GO:0016153 KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1886 34326638737bc521d060b9ab54949c42 677 SUPERFAMILY SSF111326 89 648 1.7E-221 T 14-10-2018 IPR036190 Urocanase superfamily KEGG: 00340+4.2.1.49|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 TIGRFAM TIGR00400 mgtE: magnesium transporter 10 457 8.6E-109 T 14-10-2018 IPR006669 Magnesium transporter MgtE GO:0015095|GO:0015693|GO:0016020 Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 SMART SM00116 138 191 2.6 T 14-10-2018 IPR000644 CBS domain Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 SMART SM00116 202 250 4.8E-4 T 14-10-2018 IPR000644 CBS domain Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 SUPERFAMILY SSF158791 6 128 6.41E-26 T 14-10-2018 Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 Pfam PF03448 MgtE intracellular N domain 29 128 2.5E-23 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 SMART SM00924 28 131 2.3E-25 T 14-10-2018 IPR006668 Magnesium transporter, MgtE intracellular domain Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 Pfam PF01769 Divalent cation transporter 319 449 7.3E-25 T 14-10-2018 IPR006667 SLC41 divalent cation transporters, integral membrane domain GO:0006812|GO:0008324 Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 SUPERFAMILY SSF54631 130 263 6.95E-32 T 14-10-2018 Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 Pfam PF00571 CBS domain 195 248 4.7E-8 T 14-10-2018 IPR000644 CBS domain Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 Pfam PF00571 CBS domain 132 187 1.0E-6 T 14-10-2018 IPR000644 CBS domain Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 Gene3D G3DSA:3.10.580.10 127 255 1.5E-42 T 14-10-2018 Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 Gene3D G3DSA:1.10.357.20 270 456 1.1E-52 T 14-10-2018 IPR038048 Magnesium transporter MgtE, transmembrane domain Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 Gene3D G3DSA:1.25.60.10 1 126 6.3E-22 T 14-10-2018 IPR038076 MgtE, N-terminal domain superfamily Amico_1194 e428bac73a4140aa192e6a8e593ee7c3 458 SUPERFAMILY SSF161093 277 456 5.89E-43 T 14-10-2018 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily GO:0006812|GO:0008324 Amico_1795 a200362c01988f5bc2968d09a682f039 399 Gene3D G3DSA:3.30.70.360 188 302 7.3E-139 T 14-10-2018 Amico_1795 a200362c01988f5bc2968d09a682f039 399 Pfam PF01546 Peptidase family M20/M25/M40 78 390 3.3E-38 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1795 a200362c01988f5bc2968d09a682f039 399 SUPERFAMILY SSF55031 190 303 7.46E-32 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1795 a200362c01988f5bc2968d09a682f039 399 PIRSF PIRSF005962 1 397 3.9E-131 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_1795 a200362c01988f5bc2968d09a682f039 399 SUPERFAMILY SSF53187 4 394 9.71E-84 T 14-10-2018 Amico_1795 a200362c01988f5bc2968d09a682f039 399 Pfam PF07687 Peptidase dimerisation domain 193 284 5.0E-11 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1795 a200362c01988f5bc2968d09a682f039 399 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 18 380 3.6E-116 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_1795 a200362c01988f5bc2968d09a682f039 399 Gene3D G3DSA:3.40.630.10 17 379 7.3E-139 T 14-10-2018 Amico_1652 b4f3072e78d56adb708cc96fe410ce88 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 52 68 4.2E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1652 b4f3072e78d56adb708cc96fe410ce88 229 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 38 52 4.2E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1652 b4f3072e78d56adb708cc96fe410ce88 229 Gene3D G3DSA:1.20.120.530 85 221 1.9E-10 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1652 b4f3072e78d56adb708cc96fe410ce88 229 Pfam PF00392 Bacterial regulatory proteins, gntR family 19 78 5.4E-13 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1652 b4f3072e78d56adb708cc96fe410ce88 229 SUPERFAMILY SSF48008 84 217 2.41E-10 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1652 b4f3072e78d56adb708cc96fe410ce88 229 SMART SM00345 19 78 5.1E-13 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1652 b4f3072e78d56adb708cc96fe410ce88 229 Pfam PF07729 FCD domain 89 215 1.7E-7 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1652 b4f3072e78d56adb708cc96fe410ce88 229 Gene3D G3DSA:1.10.10.10 4 84 4.6E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1652 b4f3072e78d56adb708cc96fe410ce88 229 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 49 68 8.9E-6 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Amico_1652 b4f3072e78d56adb708cc96fe410ce88 229 PRINTS PR00033 AsnC bacterial regulatory protein HTH signature 38 49 8.9E-6 T 14-10-2018 IPR000485 AsnC-type HTH domain GO:0043565 Amico_1652 b4f3072e78d56adb708cc96fe410ce88 229 SUPERFAMILY SSF46785 12 82 7.16E-16 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1332 6204ae4930300f032c06b4decba80e22 389 Pfam PF00753 Metallo-beta-lactamase superfamily 34 167 7.4E-10 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_1332 6204ae4930300f032c06b4decba80e22 389 SMART SM00849 34 220 2.5E-33 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_1332 6204ae4930300f032c06b4decba80e22 389 PIRSF PIRSF005243 1 389 5.6E-129 T 14-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 Amico_1332 6204ae4930300f032c06b4decba80e22 389 Gene3D G3DSA:3.60.15.10 1 239 7.4E-86 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_1332 6204ae4930300f032c06b4decba80e22 389 Gene3D G3DSA:3.40.50.360 240 388 3.2E-29 T 14-10-2018 IPR029039 Flavoprotein-like superfamily Amico_1332 6204ae4930300f032c06b4decba80e22 389 SUPERFAMILY SSF52218 244 387 1.3E-29 T 14-10-2018 IPR029039 Flavoprotein-like superfamily Amico_1332 6204ae4930300f032c06b4decba80e22 389 SUPERFAMILY SSF56281 3 273 1.83E-50 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_1147 110d62e2d798ef966e5cac051872d58a 563 Gene3D G3DSA:3.40.50.300 155 315 8.7E-11 T 14-10-2018 Amico_1147 110d62e2d798ef966e5cac051872d58a 563 Gene3D G3DSA:3.40.50.300 2 45 7.3E-6 T 14-10-2018 Amico_1147 110d62e2d798ef966e5cac051872d58a 563 SUPERFAMILY SSF52540 1 308 2.85E-15 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1147 110d62e2d798ef966e5cac051872d58a 563 Pfam PF13304 AAA domain, putative AbiEii toxin, Type IV TA system 211 293 3.2E-12 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_0737 3c85057143c6074092bf63932de04f78 269 Pfam PF02457 DisA bacterial checkpoint controller nucleotide-binding 111 228 4.4E-40 T 14-10-2018 IPR003390 DNA integrity scanning protein, DisA, N-terminal Amico_0737 3c85057143c6074092bf63932de04f78 269 TIGRFAM TIGR00159 TIGR00159: TIGR00159 family protein 7 242 2.5E-69 T 14-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 Amico_0737 3c85057143c6074092bf63932de04f78 269 SUPERFAMILY SSF143597 35 233 1.83E-60 T 14-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily Amico_0737 3c85057143c6074092bf63932de04f78 269 Hamap MF_01499 Diadenylate cyclase [dacA]. 4 247 31.76 T 14-10-2018 IPR034701 Diadenylate cyclase CdaA GO:0004016|GO:0006171 Amico_0737 3c85057143c6074092bf63932de04f78 269 Gene3D G3DSA:3.40.1700.10 95 246 6.4E-55 T 14-10-2018 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily Amico_0737 3c85057143c6074092bf63932de04f78 269 PIRSF PIRSF004793 1 261 1.5E-81 T 14-10-2018 IPR014046 Diadenylate cyclase GO:0004016|GO:0006171 Amico_1749 12edee2852e3d8c020fccbf32eb0c8c8 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 18 419 9.6E-132 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1749 12edee2852e3d8c020fccbf32eb0c8c8 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 417 9.9E-114 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1749 12edee2852e3d8c020fccbf32eb0c8c8 427 PIRSF PIRSF006066 1 427 2.7E-150 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1553 be17c193bebbdb23497d92b46086d8aa 477 Pfam PF00374 Nickel-dependent hydrogenase 44 120 6.5E-20 T 14-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Amico_1553 be17c193bebbdb23497d92b46086d8aa 477 Pfam PF00374 Nickel-dependent hydrogenase 270 452 3.5E-11 T 14-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Amico_1553 be17c193bebbdb23497d92b46086d8aa 477 SUPERFAMILY SSF56762 7 452 8.24E-124 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1553 be17c193bebbdb23497d92b46086d8aa 477 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 44 69 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Amico_1553 be17c193bebbdb23497d92b46086d8aa 477 Gene3D G3DSA:1.10.645.10 5 452 3.9E-107 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1553 be17c193bebbdb23497d92b46086d8aa 477 ProSitePatterns PS00508 Nickel-dependent hydrogenases large subunit signature 2. 443 452 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Amico_0197 4b0ecb27d54a538a61f8259139ea1134 418 Gene3D G3DSA:3.40.640.10 38 288 3.0E-182 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0197 4b0ecb27d54a538a61f8259139ea1134 418 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 8 416 51.962 T 14-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Amico_0197 4b0ecb27d54a538a61f8259139ea1134 418 Gene3D G3DSA:3.90.1150.10 11 395 3.0E-182 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0197 4b0ecb27d54a538a61f8259139ea1134 418 ProSitePatterns PS00096 Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 223 239 - T 14-10-2018 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site GO:0030170 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Amico_0197 4b0ecb27d54a538a61f8259139ea1134 418 PIRSF PIRSF000412 1 418 7.0E-166 T 14-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Amico_0197 4b0ecb27d54a538a61f8259139ea1134 418 Pfam PF00464 Serine hydroxymethyltransferase 9 385 2.4E-169 T 14-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Amico_0197 4b0ecb27d54a538a61f8259139ea1134 418 SUPERFAMILY SSF53383 6 415 2.34E-176 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0898 5abb4b3c7a5f984208622a3877be9bc3 193 Hamap MF_00444 ATP-dependent Clp protease proteolytic subunit [clpP]. 2 192 44.651 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Amico_0898 5abb4b3c7a5f984208622a3877be9bc3 193 PRINTS PR00127 Clp protease catalytic subunit P signature 58 78 6.2E-53 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Amico_0898 5abb4b3c7a5f984208622a3877be9bc3 193 PRINTS PR00127 Clp protease catalytic subunit P signature 18 33 6.2E-53 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Amico_0898 5abb4b3c7a5f984208622a3877be9bc3 193 PRINTS PR00127 Clp protease catalytic subunit P signature 110 129 6.2E-53 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Amico_0898 5abb4b3c7a5f984208622a3877be9bc3 193 PRINTS PR00127 Clp protease catalytic subunit P signature 89 106 6.2E-53 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Amico_0898 5abb4b3c7a5f984208622a3877be9bc3 193 PRINTS PR00127 Clp protease catalytic subunit P signature 167 186 6.2E-53 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Amico_0898 5abb4b3c7a5f984208622a3877be9bc3 193 TIGRFAM TIGR00493 clpP: ATP-dependent Clp endopeptidase, proteolytic subunit ClpP 2 190 1.8E-100 T 14-10-2018 IPR001907 ATP-dependent Clp protease proteolytic subunit GO:0004252|GO:0006508 Amico_0898 5abb4b3c7a5f984208622a3877be9bc3 193 ProSitePatterns PS00382 Endopeptidase Clp histidine active site. 111 124 - T 14-10-2018 IPR033135 ClpP, histidine active site Amico_0898 5abb4b3c7a5f984208622a3877be9bc3 193 Pfam PF00574 Clp protease 12 191 1.5E-87 T 14-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Amico_0898 5abb4b3c7a5f984208622a3877be9bc3 193 SUPERFAMILY SSF52096 10 191 2.08E-72 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Amico_0898 5abb4b3c7a5f984208622a3877be9bc3 193 ProSitePatterns PS00381 Endopeptidase Clp serine active site. 89 100 - T 14-10-2018 IPR018215 ClpP, Ser active site Amico_0898 5abb4b3c7a5f984208622a3877be9bc3 193 Gene3D G3DSA:3.90.226.10 1 193 2.4E-84 T 14-10-2018 Amico_0828 21febd5c5f991dd6cf32a9ceda955af0 325 Pfam PF06463 Molybdenum Cofactor Synthesis C 186 310 1.6E-27 T 14-10-2018 IPR010505 Molybdenum cofactor synthesis C-terminal GO:0006777|GO:0019008|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0828 21febd5c5f991dd6cf32a9ceda955af0 325 SMART SM00729 13 216 1.7E-4 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Amico_0828 21febd5c5f991dd6cf32a9ceda955af0 325 Pfam PF13353 4Fe-4S single cluster domain 20 109 2.4E-7 T 14-10-2018 Amico_0828 21febd5c5f991dd6cf32a9ceda955af0 325 TIGRFAM TIGR02666 moaA: molybdenum cofactor biosynthesis protein A 4 325 5.0E-93 T 14-10-2018 IPR013483 Molybdenum cofactor biosynthesis protein A GO:0006777|GO:0046872 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0828 21febd5c5f991dd6cf32a9ceda955af0 325 Pfam PF04055 Radical SAM superfamily 17 178 1.5E-22 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_0828 21febd5c5f991dd6cf32a9ceda955af0 325 Gene3D G3DSA:3.20.20.70 1 325 9.5E-79 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0828 21febd5c5f991dd6cf32a9ceda955af0 325 SUPERFAMILY SSF102114 5 297 1.7E-62 T 14-10-2018 Amico_0828 21febd5c5f991dd6cf32a9ceda955af0 325 ProSitePatterns PS01305 moaA / nifB / pqqE family signature. 19 30 - T 14-10-2018 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site GO:0003824|GO:0046872|GO:0051539 KEGG: 00790+4.1.99.22|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 Hamap MF_01152 Chaperone protein DnaJ [dnaJ]. 6 377 38.637 T 14-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 SUPERFAMILY SSF49493 266 354 3.27E-20 T 14-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 SUPERFAMILY SSF57938 138 218 2.22E-18 T 14-10-2018 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 SUPERFAMILY SSF46565 8 109 9.54E-35 T 14-10-2018 IPR036869 Chaperone J-domain superfamily Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 SUPERFAMILY SSF49493 117 265 1.7E-17 T 14-10-2018 IPR008971 HSP40/DnaJ peptide-binding GO:0006457|GO:0051082 Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 Pfam PF00226 DnaJ domain 9 71 1.5E-28 T 14-10-2018 IPR001623 DnaJ domain Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 Pfam PF00684 DnaJ central domain 151 215 1.4E-14 T 14-10-2018 IPR001305 Heat shock protein DnaJ, cysteine-rich domain GO:0031072|GO:0051082 Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 Gene3D G3DSA:1.10.287.110 6 114 5.2E-36 T 14-10-2018 IPR036869 Chaperone J-domain superfamily Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 Gene3D G3DSA:2.60.260.20 121 257 2.3E-35 T 14-10-2018 Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 SMART SM00271 8 66 1.2E-32 T 14-10-2018 IPR001623 DnaJ domain Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 ProSitePatterns PS00636 Nt-dnaJ domain signature. 51 70 - T 14-10-2018 IPR018253 DnaJ domain, conserved site Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 PRINTS PR00625 DnaJ domain signature 66 85 4.5E-28 T 14-10-2018 IPR001623 DnaJ domain Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 PRINTS PR00625 DnaJ domain signature 46 66 4.5E-28 T 14-10-2018 IPR001623 DnaJ domain Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 PRINTS PR00625 DnaJ domain signature 29 44 4.5E-28 T 14-10-2018 IPR001623 DnaJ domain Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 PRINTS PR00625 DnaJ domain signature 11 29 4.5E-28 T 14-10-2018 IPR001623 DnaJ domain Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 Gene3D G3DSA:2.10.230.10 151 215 2.3E-35 T 14-10-2018 Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 TIGRFAM TIGR02349 DnaJ_bact: chaperone protein DnaJ 9 360 4.0E-128 T 14-10-2018 IPR012724 Chaperone DnaJ GO:0005524|GO:0006457|GO:0009408|GO:0051082 Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 Pfam PF01556 DnaJ C terminal domain 124 343 1.2E-39 T 14-10-2018 IPR002939 Chaperone DnaJ, C-terminal Amico_1440 b7e3ff3c8d3ab927b9be1a10797b3866 380 Gene3D G3DSA:2.60.260.20 263 370 4.0E-28 T 14-10-2018 Amico_0880 d5fd620d964cf1f03063265ed4076888 376 TIGRFAM TIGR00236 wecB: UDP-N-acetylglucosamine 2-epimerase 5 366 1.5E-135 T 14-10-2018 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like GO:0008761 Amico_0880 d5fd620d964cf1f03063265ed4076888 376 Pfam PF02350 UDP-N-acetylglucosamine 2-epimerase 25 365 2.1E-105 T 14-10-2018 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain Reactome: R-HSA-4085001|Reactome: R-HSA-4085011 Amico_0880 d5fd620d964cf1f03063265ed4076888 376 Gene3D G3DSA:3.40.50.2000 189 353 1.9E-134 T 14-10-2018 Amico_0880 d5fd620d964cf1f03063265ed4076888 376 SUPERFAMILY SSF53756 2 373 2.04E-118 T 14-10-2018 Amico_0880 d5fd620d964cf1f03063265ed4076888 376 Gene3D G3DSA:3.40.50.2000 5 362 1.9E-134 T 14-10-2018 Amico_0641 8baa21325a2682639b9972fd0079bfa3 134 Hamap MF_01302_B 30S ribosomal protein S8 [rpsH]. 2 134 31.836 T 14-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0641 8baa21325a2682639b9972fd0079bfa3 134 Pfam PF00410 Ribosomal protein S8 5 134 6.1E-50 T 14-10-2018 IPR000630 Ribosomal protein S8 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0641 8baa21325a2682639b9972fd0079bfa3 134 Gene3D G3DSA:3.30.1370.30 4 76 8.5E-30 T 14-10-2018 Amico_0641 8baa21325a2682639b9972fd0079bfa3 134 Gene3D G3DSA:3.30.1490.10 77 134 6.6E-25 T 14-10-2018 Amico_0641 8baa21325a2682639b9972fd0079bfa3 134 SUPERFAMILY SSF56047 3 134 1.57E-45 T 14-10-2018 IPR035987 Ribosomal protein S8 superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0341 8ec49208696d9a95af95595ba1a099cc 283 ProSitePatterns PS01330 Polyamine biosynthesis (PABS) domain signature. 87 100 - T 14-10-2018 IPR030373 Polyamine biosynthesis domain, conserved site KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Amico_0341 8ec49208696d9a95af95595ba1a099cc 283 Gene3D G3DSA:2.30.140.10 9 59 2.6E-18 T 14-10-2018 IPR037163 Spermidine synthase, tetramerisation domain superfamily KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Amico_0341 8ec49208696d9a95af95595ba1a099cc 283 Pfam PF17284 Spermidine synthase tetramerisation domain 11 63 1.2E-16 T 14-10-2018 IPR035246 Spermidine synthase, tetramerisation domain KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Amico_0341 8ec49208696d9a95af95595ba1a099cc 283 Gene3D G3DSA:3.40.50.150 61 282 8.3E-65 T 14-10-2018 Amico_0341 8ec49208696d9a95af95595ba1a099cc 283 TIGRFAM TIGR00417 speE: spermidine synthase 12 275 8.5E-95 T 14-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Amico_0341 8ec49208696d9a95af95595ba1a099cc 283 Hamap MF_00198 Polyamine aminopropyltransferase [speE]. 11 281 38.01 T 14-10-2018 IPR001045 Spermidine/spermine synthases GO:0003824 KEGG: 00270+2.5.1.16|KEGG: 00330+2.5.1.16|KEGG: 00410+2.5.1.16|KEGG: 00480+2.5.1.16|Reactome: R-HSA-351202 Amico_0341 8ec49208696d9a95af95595ba1a099cc 283 Pfam PF01564 Spermine/spermidine synthase domain 66 247 2.6E-57 T 14-10-2018 Amico_0341 8ec49208696d9a95af95595ba1a099cc 283 SUPERFAMILY SSF53335 10 281 1.02E-80 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0458 e1c8a2b05cbd68ee01c338a06fc168d1 181 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 30 159 1.1E-23 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1719 49be8e6b0d525c8c16870bcb1d9c8d34 415 Gene3D G3DSA:3.40.50.2000 232 404 7.4E-19 T 14-10-2018 Amico_1719 49be8e6b0d525c8c16870bcb1d9c8d34 415 SUPERFAMILY SSF53756 69 408 1.66E-36 T 14-10-2018 Amico_1719 49be8e6b0d525c8c16870bcb1d9c8d34 415 Pfam PF13439 Glycosyltransferase Family 4 23 211 4.8E-8 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Amico_1719 49be8e6b0d525c8c16870bcb1d9c8d34 415 Pfam PF13692 Glycosyl transferases group 1 234 363 3.6E-7 T 14-10-2018 Amico_1719 49be8e6b0d525c8c16870bcb1d9c8d34 415 Gene3D G3DSA:3.40.50.2000 19 228 8.9E-13 T 14-10-2018 Amico_0622 1dc0310ddef35458073c884d26ada564 123 ProSitePatterns PS00055 Ribosomal protein S12 signature. 43 50 - T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0622 1dc0310ddef35458073c884d26ada564 123 Pfam PF00164 Ribosomal protein S12/S23 12 123 3.1E-42 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0622 1dc0310ddef35458073c884d26ada564 123 TIGRFAM TIGR00981 rpsL_bact: ribosomal protein uS12 2 123 1.4E-67 T 14-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0622 1dc0310ddef35458073c884d26ada564 123 Hamap MF_00403_B 30S ribosomal protein S12 [rpsL]. 1 123 39.68 T 14-10-2018 IPR005679 Ribosomal protein S12, bacterial-type GO:0003735|GO:0006412|GO:0015935 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0622 1dc0310ddef35458073c884d26ada564 123 PIRSF PIRSF002133 1 123 4.0E-53 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0622 1dc0310ddef35458073c884d26ada564 123 PRINTS PR01034 Ribosomal protein S12 signature 58 77 8.2E-59 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0622 1dc0310ddef35458073c884d26ada564 123 PRINTS PR01034 Ribosomal protein S12 signature 42 57 8.2E-59 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0622 1dc0310ddef35458073c884d26ada564 123 PRINTS PR01034 Ribosomal protein S12 signature 27 42 8.2E-59 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0622 1dc0310ddef35458073c884d26ada564 123 PRINTS PR01034 Ribosomal protein S12 signature 77 94 8.2E-59 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0622 1dc0310ddef35458073c884d26ada564 123 PRINTS PR01034 Ribosomal protein S12 signature 94 110 8.2E-59 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0622 1dc0310ddef35458073c884d26ada564 123 PRINTS PR01034 Ribosomal protein S12 signature 110 122 8.2E-59 T 14-10-2018 IPR006032 Ribosomal protein S12/S23 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0622 1dc0310ddef35458073c884d26ada564 123 Gene3D G3DSA:2.40.50.140 1 123 4.7E-63 T 14-10-2018 Amico_0622 1dc0310ddef35458073c884d26ada564 123 SUPERFAMILY SSF50249 2 123 6.94E-52 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0059 74309915238eb5e410a6cdfa3b314195 708 Pfam PF00702 haloacid dehalogenase-like hydrolase 403 613 8.3E-37 T 14-10-2018 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 TIGRFAM TIGR01494 ATPase_P-type: HAD ATPase, P-type, family IC 177 676 2.7E-70 T 14-10-2018 IPR001757 P-type ATPase GO:0016021 Reactome: R-HSA-936837 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 543 553 6.5E-24 T 14-10-2018 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 599 618 6.5E-24 T 14-10-2018 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 520 531 6.5E-24 T 14-10-2018 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 623 635 6.5E-24 T 14-10-2018 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 255 269 6.5E-24 T 14-10-2018 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 PRINTS PR00119 P-type cation-transporting ATPase superfamily signature 406 420 6.5E-24 T 14-10-2018 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 Gene3D G3DSA:3.30.70.100 3 82 3.4E-8 T 14-10-2018 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 Gene3D G3DSA:2.70.150.20 199 309 8.8E-33 T 14-10-2018 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 SUPERFAMILY SSF55008 4 66 7.2E-9 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 ProSitePatterns PS00154 E1-E2 ATPases phosphorylation site. 408 414 - T 14-10-2018 IPR018303 P-type ATPase, phosphorylation site Reactome: R-HSA-936837 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 TIGRFAM TIGR01512 ATPase-IB2_Cd: cadmium-translocating P-type ATPase 157 704 1.5E-159 T 14-10-2018 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 SUPERFAMILY SSF81665 157 492 8.11E-11 T 14-10-2018 IPR023298 P-type ATPase, transmembrane domain superfamily Reactome: R-HSA-936837 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 TIGRFAM TIGR01525 ATPase-IB_hvy: heavy metal translocating P-type ATPase 158 701 1.2E-173 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 Pfam PF00122 E1-E2 ATPase 207 386 2.8E-49 T 14-10-2018 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 Gene3D G3DSA:3.40.50.1000 387 652 2.7E-80 T 14-10-2018 IPR023214 HAD superfamily Amico_0059 74309915238eb5e410a6cdfa3b314195 708 SUPERFAMILY SSF56784 404 700 3.4E-58 T 14-10-2018 IPR036412 HAD-like superfamily Amico_0059 74309915238eb5e410a6cdfa3b314195 708 Pfam PF00403 Heavy-metal-associated domain 4 57 3.3E-8 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 PRINTS PR00941 Cadmium-transporting ATPase signature 15 36 2.4E-8 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 PRINTS PR00941 Cadmium-transporting ATPase signature 4 13 2.4E-8 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 PRINTS PR00941 Cadmium-transporting ATPase signature 271 287 2.4E-8 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 PRINTS PR00941 Cadmium-transporting ATPase signature 290 304 2.4E-8 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 PRINTS PR00941 Cadmium-transporting ATPase signature 190 210 2.4E-8 T 14-10-2018 IPR027256 P-type ATPase, subfamily IB GO:0006812|GO:0016021|GO:0019829 Reactome: R-HSA-936837 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 Gene3D G3DSA:3.40.1110.10 417 527 2.7E-80 T 14-10-2018 IPR023299 P-type ATPase, cytoplasmic domain N GO:0000166 Reactome: R-HSA-936837 Amico_0059 74309915238eb5e410a6cdfa3b314195 708 SUPERFAMILY SSF81653 208 305 1.96E-24 T 14-10-2018 IPR008250 P-type ATPase, A domain superfamily Reactome: R-HSA-936837 Amico_1462 5aba316f2a9ac4743556a81fdb99c633 339 Pfam PF04230 Polysaccharide pyruvyl transferase 17 281 3.0E-33 T 14-10-2018 IPR007345 Polysaccharide pyruvyl transferase Amico_1462 5aba316f2a9ac4743556a81fdb99c633 339 TIGRFAM TIGR03609 S_layer_CsaB: polysaccharide pyruvyl transferase CsaB 7 302 3.0E-71 T 14-10-2018 IPR019896 Polysaccharide pyruvyl transferase, CsaB Amico_1790 b852b61de48e8eac0722588589d7051b 394 PIRSF PIRSF000106 22 394 2.2E-85 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Amico_1790 b852b61de48e8eac0722588589d7051b 394 SMART SM00919 163 387 1.6E-128 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Amico_1790 b852b61de48e8eac0722588589d7051b 394 SUPERFAMILY SSF51735 163 393 1.66E-80 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1790 b852b61de48e8eac0722588589d7051b 394 SMART SM01274 18 151 1.8E-79 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Amico_1790 b852b61de48e8eac0722588589d7051b 394 Gene3D G3DSA:3.40.50.720 161 394 4.4E-87 T 14-10-2018 Amico_1790 b852b61de48e8eac0722588589d7051b 394 Gene3D G3DSA:3.40.50.10380 1 160 5.2E-73 T 14-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 Amico_1790 b852b61de48e8eac0722588589d7051b 394 Pfam PF03949 Malic enzyme, NAD binding domain 165 386 9.4E-28 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Amico_1790 b852b61de48e8eac0722588589d7051b 394 ProSitePatterns PS00331 Malic enzymes signature. 159 175 - T 14-10-2018 IPR015884 Malic enzyme, conserved site GO:0004471|GO:0055114 Amico_1790 b852b61de48e8eac0722588589d7051b 394 SUPERFAMILY SSF53223 10 161 3.38E-55 T 14-10-2018 Amico_1790 b852b61de48e8eac0722588589d7051b 394 Pfam PF00390 Malic enzyme, N-terminal domain 25 151 5.8E-27 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Amico_1860 8800293b0a7614d3914adf537e81e295 395 Gene3D G3DSA:3.40.630.10 15 380 2.6E-133 T 14-10-2018 Amico_1860 8800293b0a7614d3914adf537e81e295 395 Pfam PF01546 Peptidase family M20/M25/M40 76 392 4.1E-32 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1860 8800293b0a7614d3914adf537e81e295 395 Gene3D G3DSA:3.30.70.360 188 302 2.6E-133 T 14-10-2018 Amico_1860 8800293b0a7614d3914adf537e81e295 395 SUPERFAMILY SSF55031 191 298 3.27E-31 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1860 8800293b0a7614d3914adf537e81e295 395 SUPERFAMILY SSF53187 3 394 2.03E-78 T 14-10-2018 Amico_1860 8800293b0a7614d3914adf537e81e295 395 Pfam PF07687 Peptidase dimerisation domain 193 282 6.2E-14 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1860 8800293b0a7614d3914adf537e81e295 395 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 15 383 4.0E-102 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_1860 8800293b0a7614d3914adf537e81e295 395 PIRSF PIRSF005962 1 395 7.2E-123 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_0447 699ee594e686110fb6b6376cd028b05a 521 Gene3D G3DSA:3.40.1080.10 254 521 7.9E-104 T 14-10-2018 Amico_0447 699ee594e686110fb6b6376cd028b05a 521 PIRSF PIRSF009451 3 521 2.1E-175 T 14-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 Amico_0447 699ee594e686110fb6b6376cd028b05a 521 Pfam PF04223 Citrate lyase, alpha subunit (CitF) 53 517 1.6E-156 T 14-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 Amico_0447 699ee594e686110fb6b6376cd028b05a 521 Gene3D G3DSA:3.40.1080.10 3 253 2.1E-76 T 14-10-2018 Amico_0447 699ee594e686110fb6b6376cd028b05a 521 SUPERFAMILY SSF100950 253 518 1.6E-51 T 14-10-2018 IPR037171 NagB/RpiA transferase-like Amico_0447 699ee594e686110fb6b6376cd028b05a 521 TIGRFAM TIGR01584 citF: citrate lyase, alpha subunit 51 520 1.0E-167 T 14-10-2018 IPR006472 Citrate lyase, alpha subunit GO:0005737|GO:0006084|GO:0008814|GO:0009346 MetaCyc: PWY-6038 Amico_0447 699ee594e686110fb6b6376cd028b05a 521 SUPERFAMILY SSF100950 6 248 8.37E-53 T 14-10-2018 IPR037171 NagB/RpiA transferase-like Amico_0525 9d22c9731525d2b26d63ee93b9f2a01e 298 SUPERFAMILY SSF53850 94 295 4.64E-41 T 14-10-2018 Amico_0525 9d22c9731525d2b26d63ee93b9f2a01e 298 SUPERFAMILY SSF46785 4 113 6.81E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0525 9d22c9731525d2b26d63ee93b9f2a01e 298 Pfam PF00126 Bacterial regulatory helix-turn-helix protein, lysR family 6 65 6.7E-16 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Amico_0525 9d22c9731525d2b26d63ee93b9f2a01e 298 Gene3D G3DSA:3.40.190.10 94 280 5.4E-41 T 14-10-2018 Amico_0525 9d22c9731525d2b26d63ee93b9f2a01e 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 42 53 6.2E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Amico_0525 9d22c9731525d2b26d63ee93b9f2a01e 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 32 42 6.2E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Amico_0525 9d22c9731525d2b26d63ee93b9f2a01e 298 PRINTS PR00039 LysR bacterial regulatory protein HTH signature 21 32 6.2E-6 T 14-10-2018 IPR000847 Transcription regulator HTH, LysR GO:0003700|GO:0006355 Amico_0525 9d22c9731525d2b26d63ee93b9f2a01e 298 Gene3D G3DSA:1.10.10.10 3 93 4.3E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0525 9d22c9731525d2b26d63ee93b9f2a01e 298 Gene3D G3DSA:3.40.190.10 167 269 5.4E-41 T 14-10-2018 Amico_0525 9d22c9731525d2b26d63ee93b9f2a01e 298 Pfam PF03466 LysR substrate binding domain 92 291 2.9E-44 T 14-10-2018 IPR005119 LysR, substrate-binding Amico_0810 d956289e095a825aacc615905a22c4e9 141 Hamap MF_01008 Transcriptional regulator MraZ [mraZ]. 1 141 45.09 T 14-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Amico_0810 d956289e095a825aacc615905a22c4e9 141 TIGRFAM TIGR00242 TIGR00242: division/cell wall cluster transcriptional repressor MraZ 1 140 6.7E-41 T 14-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Amico_0810 d956289e095a825aacc615905a22c4e9 141 ProDom PD006745 MRAZ YABB DIVISION CELL 3D-STRUCTURE UNCHARACTERIZED BCR SIMILAR PROTEIN 1 138 4.0E-37 T 14-10-2018 IPR003444 Transcriptional regulator MraZ GO:0003700|GO:0006355 Amico_0810 d956289e095a825aacc615905a22c4e9 141 SUPERFAMILY SSF89447 1 136 8.22E-45 T 14-10-2018 IPR037914 SpoVT-AbrB domain superfamily Amico_0810 d956289e095a825aacc615905a22c4e9 141 Pfam PF02381 MraZ protein, putative antitoxin-like 1 70 1.4E-18 T 14-10-2018 IPR020603 MraZ domain Amico_0810 d956289e095a825aacc615905a22c4e9 141 Pfam PF02381 MraZ protein, putative antitoxin-like 72 129 2.3E-16 T 14-10-2018 IPR020603 MraZ domain Amico_0810 d956289e095a825aacc615905a22c4e9 141 Gene3D G3DSA:2.40.330.20 1 140 6.5E-47 T 14-10-2018 IPR038619 MraZ superfamily Amico_0097 0991109b05c4b7f8627d8b249ae8e8ef 221 PIRSF PIRSF000441 9 221 8.7E-73 T 14-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 Amico_0097 0991109b05c4b7f8627d8b249ae8e8ef 221 Gene3D G3DSA:1.10.3130.10 1 81 2.8E-22 T 14-10-2018 Amico_0097 0991109b05c4b7f8627d8b249ae8e8ef 221 TIGRFAM TIGR01172 cysE: serine O-acetyltransferase 15 180 1.2E-69 T 14-10-2018 IPR005881 Serine O-acetyltransferase GO:0005737|GO:0006535|GO:0009001 KEGG: 00270+2.3.1.30|KEGG: 00920+2.3.1.30|KEGG: 00999+2.3.1.30|MetaCyc: PWY-6936|MetaCyc: PWY-7274|MetaCyc: PWY-7870 Amico_0097 0991109b05c4b7f8627d8b249ae8e8ef 221 Gene3D G3DSA:2.160.10.10 82 204 5.3E-37 T 14-10-2018 Amico_0097 0991109b05c4b7f8627d8b249ae8e8ef 221 SUPERFAMILY SSF51161 10 182 9.15E-48 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Amico_0097 0991109b05c4b7f8627d8b249ae8e8ef 221 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 132 165 1.1E-9 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_0097 0991109b05c4b7f8627d8b249ae8e8ef 221 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 141 169 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Amico_1366 e6ea4b6a900c3d2e84dc58ae81dd8dcc 465 ProSitePatterns PS00174 Phosphoglucose isomerase signature 2. 410 427 - T 14-10-2018 IPR018189 Phosphoglucose isomerase, conserved site GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_1366 e6ea4b6a900c3d2e84dc58ae81dd8dcc 465 Gene3D G3DSA:3.40.50.10490 59 222 1.2E-134 T 14-10-2018 Amico_1366 e6ea4b6a900c3d2e84dc58ae81dd8dcc 465 Gene3D G3DSA:3.40.50.10490 35 439 1.2E-134 T 14-10-2018 Amico_1366 e6ea4b6a900c3d2e84dc58ae81dd8dcc 465 SUPERFAMILY SSF53697 26 440 2.45E-108 T 14-10-2018 Amico_1366 e6ea4b6a900c3d2e84dc58ae81dd8dcc 465 Hamap MF_00473 Glucose-6-phosphate isomerase [pgi]. 2 437 23.567 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_1366 e6ea4b6a900c3d2e84dc58ae81dd8dcc 465 Pfam PF00342 Phosphoglucose isomerase 74 430 4.9E-37 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_1366 e6ea4b6a900c3d2e84dc58ae81dd8dcc 465 PRINTS PR00662 Glucose-6-phosphate isomerase signature 78 97 3.2E-26 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_1366 e6ea4b6a900c3d2e84dc58ae81dd8dcc 465 PRINTS PR00662 Glucose-6-phosphate isomerase signature 396 410 3.2E-26 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_1366 e6ea4b6a900c3d2e84dc58ae81dd8dcc 465 PRINTS PR00662 Glucose-6-phosphate isomerase signature 198 216 3.2E-26 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_1366 e6ea4b6a900c3d2e84dc58ae81dd8dcc 465 PRINTS PR00662 Glucose-6-phosphate isomerase signature 274 295 3.2E-26 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_1366 e6ea4b6a900c3d2e84dc58ae81dd8dcc 465 PRINTS PR00662 Glucose-6-phosphate isomerase signature 378 396 3.2E-26 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_1366 e6ea4b6a900c3d2e84dc58ae81dd8dcc 465 PRINTS PR00662 Glucose-6-phosphate isomerase signature 410 423 3.2E-26 T 14-10-2018 IPR001672 Phosphoglucose isomerase (PGI) GO:0004347|GO:0006094|GO:0006096 KEGG: 00010+5.3.1.9|KEGG: 00030+5.3.1.9|KEGG: 00500+5.3.1.9|KEGG: 00520+5.3.1.9|MetaCyc: PWY-3801|MetaCyc: PWY-5054|MetaCyc: PWY-5384|MetaCyc: PWY-5514|MetaCyc: PWY-5659|MetaCyc: PWY-6142|MetaCyc: PWY-621|MetaCyc: PWY-622|MetaCyc: PWY-6981|MetaCyc: PWY-6992|MetaCyc: PWY-7238|MetaCyc: PWY-7347|MetaCyc: PWY-7385|Reactome: R-HSA-5628897|Reactome: R-HSA-6798695|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0519 5fae987182b3f08ec1af692b09b22c6e 343 PIRSF PIRSF036497 1 341 1.0E-93 T 14-10-2018 IPR022697 Homoserine dehydrogenase lacking ACT domain GO:0004412 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Amico_0519 5fae987182b3f08ec1af692b09b22c6e 343 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 7 144 4.3E-7 T 14-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Amico_0519 5fae987182b3f08ec1af692b09b22c6e 343 SUPERFAMILY SSF55347 156 320 2.55E-43 T 14-10-2018 Amico_0519 5fae987182b3f08ec1af692b09b22c6e 343 Gene3D G3DSA:3.30.360.10 156 318 3.1E-105 T 14-10-2018 Amico_0519 5fae987182b3f08ec1af692b09b22c6e 343 Gene3D G3DSA:3.40.50.720 3 326 3.1E-105 T 14-10-2018 Amico_0519 5fae987182b3f08ec1af692b09b22c6e 343 SUPERFAMILY SSF51735 1 177 1.83E-19 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0519 5fae987182b3f08ec1af692b09b22c6e 343 Pfam PF00742 Homoserine dehydrogenase 156 334 3.4E-51 T 14-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Amico_0519 5fae987182b3f08ec1af692b09b22c6e 343 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 202 224 - T 14-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Amico_1121 faffa128fac0b9c6df400fa4398654f4 494 TIGRFAM TIGR01539 portal_lambda: phage portal protein, lambda family 71 484 3.0E-100 T 14-10-2018 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 Amico_1121 faffa128fac0b9c6df400fa4398654f4 494 Pfam PF05136 Phage portal protein, lambda family 50 382 1.3E-111 T 14-10-2018 IPR006429 Phage portal protein, lambda family GO:0005198|GO:0019068 Amico_1059 52853997a944b9408d3af662b5fcca92 181 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 5 178 35.348 T 14-10-2018 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Amico_1059 52853997a944b9408d3af662b5fcca92 181 SUPERFAMILY SSF53271 7 172 2.31E-44 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Amico_1059 52853997a944b9408d3af662b5fcca92 181 Pfam PF00156 Phosphoribosyl transferase domain 14 150 6.0E-21 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Amico_1059 52853997a944b9408d3af662b5fcca92 181 Gene3D G3DSA:3.40.50.2020 1 181 3.1E-58 T 14-10-2018 Amico_0402 15a351e99f9528f4602591d31eb34334 402 SMART SM00849 33 228 2.7E-23 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0402 15a351e99f9528f4602591d31eb34334 402 PIRSF PIRSF005243 1 401 6.5E-140 T 14-10-2018 IPR016440 Rubredoxin-oxygen oxidoreductase GO:0009055|GO:0010181|GO:0016491|GO:0046872 Amico_0402 15a351e99f9528f4602591d31eb34334 402 Pfam PF00753 Metallo-beta-lactamase superfamily 34 179 3.3E-7 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0402 15a351e99f9528f4602591d31eb34334 402 Gene3D G3DSA:3.40.50.360 251 401 1.7E-38 T 14-10-2018 IPR029039 Flavoprotein-like superfamily Amico_0402 15a351e99f9528f4602591d31eb34334 402 Gene3D G3DSA:3.60.15.10 2 248 2.6E-90 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_0402 15a351e99f9528f4602591d31eb34334 402 Pfam PF00258 Flavodoxin 257 387 2.8E-10 T 14-10-2018 IPR008254 Flavodoxin/nitric oxide synthase GO:0010181 Amico_0402 15a351e99f9528f4602591d31eb34334 402 SUPERFAMILY SSF52218 252 398 3.84E-37 T 14-10-2018 IPR029039 Flavoprotein-like superfamily Amico_0402 15a351e99f9528f4602591d31eb34334 402 SUPERFAMILY SSF56281 10 289 1.15E-45 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_1823 1413caf34c2eab4bd3cc6269137c0276 171 Pfam PF08534 Redoxin 23 163 5.2E-20 T 14-10-2018 IPR013740 Redoxin GO:0016491 Reactome: R-HSA-3299685|Reactome: R-HSA-5628897 Amico_1823 1413caf34c2eab4bd3cc6269137c0276 171 ProSitePatterns PS01265 Tpx family signature. 87 98 - T 14-10-2018 IPR018219 Thiol peroxidase conserved site GO:0016684|GO:0055114 KEGG: 00480+1.11.1.15 Amico_1823 1413caf34c2eab4bd3cc6269137c0276 171 SUPERFAMILY SSF52833 6 164 1.62E-38 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Amico_1823 1413caf34c2eab4bd3cc6269137c0276 171 Gene3D G3DSA:3.40.30.10 2 168 8.1E-45 T 14-10-2018 Amico_1519 42b864b727349085a76cfd44f93d160b 297 Hamap MF_01808 Tyrosine recombinase XerC [xerC]. 9 293 49.545 T 14-10-2018 IPR023009 Tyrosine recombinase XerC/XerD Amico_1519 42b864b727349085a76cfd44f93d160b 297 Pfam PF02899 Phage integrase, N-terminal SAM-like domain 11 93 3.3E-14 T 14-10-2018 IPR004107 Integrase, SAM-like, N-terminal GO:0003677|GO:0015074 Amico_1519 42b864b727349085a76cfd44f93d160b 297 Pfam PF00589 Phage integrase family 117 279 2.8E-45 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Amico_1519 42b864b727349085a76cfd44f93d160b 297 SUPERFAMILY SSF56349 9 284 9.12E-61 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Amico_1519 42b864b727349085a76cfd44f93d160b 297 Gene3D G3DSA:1.10.150.130 5 110 2.2E-24 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal Amico_1519 42b864b727349085a76cfd44f93d160b 297 Gene3D G3DSA:1.10.443.10 111 292 4.4E-59 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Amico_0011 e749720b24d658dc0fe001f9079f56ee 294 Pfam PF00701 Dihydrodipicolinate synthetase family 2 290 1.0E-88 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_0011 e749720b24d658dc0fe001f9079f56ee 294 SUPERFAMILY SSF51569 1 292 1.15E-96 T 14-10-2018 Amico_0011 e749720b24d658dc0fe001f9079f56ee 294 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 133 163 - T 14-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 Amico_0011 e749720b24d658dc0fe001f9079f56ee 294 TIGRFAM TIGR00674 dapA: 4-hydroxy-tetrahydrodipicolinate synthase 7 290 1.5E-99 T 14-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0011 e749720b24d658dc0fe001f9079f56ee 294 SMART SM01130 1 292 6.4E-132 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_0011 e749720b24d658dc0fe001f9079f56ee 294 PIRSF PIRSF001365 1 294 7.8E-91 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_0011 e749720b24d658dc0fe001f9079f56ee 294 Hamap MF_00418 4-hydroxy-tetrahydrodipicolinate synthase [dapA]. 1 290 61.763 T 14-10-2018 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA GO:0008840|GO:0009089 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0011 e749720b24d658dc0fe001f9079f56ee 294 Gene3D G3DSA:3.20.20.70 1 294 7.4E-107 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0011 e749720b24d658dc0fe001f9079f56ee 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 70 88 5.0E-31 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_0011 e749720b24d658dc0fe001f9079f56ee 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 102 118 5.0E-31 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_0011 e749720b24d658dc0fe001f9079f56ee 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 34 55 5.0E-31 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_0011 e749720b24d658dc0fe001f9079f56ee 294 PRINTS PR00146 Dihydrodipicolinate synthase signature 128 145 5.0E-31 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_1030 bfb4d85272fa353d9ed736b28518e056 427 Gene3D G3DSA:3.20.20.140 59 349 4.2E-124 T 14-10-2018 Amico_1030 bfb4d85272fa353d9ed736b28518e056 427 Gene3D G3DSA:2.30.40.10 23 402 4.2E-124 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1030 bfb4d85272fa353d9ed736b28518e056 427 SUPERFAMILY SSF51338 1 72 4.63E-11 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1030 bfb4d85272fa353d9ed736b28518e056 427 Pfam PF01979 Amidohydrolase family 56 400 6.1E-69 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Amico_1030 bfb4d85272fa353d9ed736b28518e056 427 Hamap MF_01281 5'-deoxyadenosine deaminase [dadD]. 3 426 40.221 T 14-10-2018 IPR023512 Deaminase MtaD/DadD GO:0019239 Amico_1030 bfb4d85272fa353d9ed736b28518e056 427 SUPERFAMILY SSF51338 309 426 3.24E-21 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1030 bfb4d85272fa353d9ed736b28518e056 427 SUPERFAMILY SSF51556 58 347 9.08E-91 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_1381 0d1159a0c99d26f38a9f764c6c4702e4 440 TIGRFAM TIGR01574 miaB-methiolase: tRNA-i(6)A37 thiotransferase enzyme MiaB 4 436 2.6E-136 T 14-10-2018 Amico_1381 0d1159a0c99d26f38a9f764c6c4702e4 440 Pfam PF00919 Uncharacterized protein family UPF0004 3 100 1.8E-22 T 14-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Amico_1381 0d1159a0c99d26f38a9f764c6c4702e4 440 Gene3D G3DSA:3.80.30.20 144 376 1.2E-88 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Amico_1381 0d1159a0c99d26f38a9f764c6c4702e4 440 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 433 5.4E-136 T 14-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Amico_1381 0d1159a0c99d26f38a9f764c6c4702e4 440 Pfam PF04055 Radical SAM superfamily 149 318 7.4E-26 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_1381 0d1159a0c99d26f38a9f764c6c4702e4 440 SUPERFAMILY SSF102114 143 368 1.7E-58 T 14-10-2018 Amico_1381 0d1159a0c99d26f38a9f764c6c4702e4 440 Pfam PF01938 TRAM domain 376 436 8.8E-9 T 14-10-2018 IPR002792 TRAM domain Amico_1381 0d1159a0c99d26f38a9f764c6c4702e4 440 Gene3D G3DSA:3.40.50.12160 2 131 8.9E-24 T 14-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Amico_1381 0d1159a0c99d26f38a9f764c6c4702e4 440 SMART SM00729 145 363 2.2E-56 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Amico_1381 0d1159a0c99d26f38a9f764c6c4702e4 440 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 149 169 - T 14-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Amico_1672 6dc5e753e0c9ee32474f7d0642276b49 220 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 11 211 3.4E-47 T 14-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Amico_1672 6dc5e753e0c9ee32474f7d0642276b49 220 Pfam PF01081 KDPG and KHG aldolase 11 190 1.3E-36 T 14-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Amico_1672 6dc5e753e0c9ee32474f7d0642276b49 220 SUPERFAMILY SSF51569 5 207 7.69E-55 T 14-10-2018 Amico_1672 6dc5e753e0c9ee32474f7d0642276b49 220 Gene3D G3DSA:3.20.20.70 2 217 3.7E-62 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0530 75c38845e1df3a862466b7c90522c705 365 Pfam PF05958 tRNA (Uracil-5-)-methyltransferase 292 361 1.8E-6 T 14-10-2018 IPR010280 (Uracil-5)-methyltransferase family GO:0006396|GO:0008173 Amico_0530 75c38845e1df3a862466b7c90522c705 365 ProSitePatterns PS01230 RNA methyltransferase trmA family signature 1. 294 326 - T 14-10-2018 IPR030390 RNA methyltransferase TrmA, active site Amico_0530 75c38845e1df3a862466b7c90522c705 365 SUPERFAMILY SSF53335 10 362 6.98E-28 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0530 75c38845e1df3a862466b7c90522c705 365 Gene3D G3DSA:3.40.50.150 15 358 4.8E-46 T 14-10-2018 Amico_0530 75c38845e1df3a862466b7c90522c705 365 Gene3D G3DSA:3.40.1350.30 59 196 4.8E-46 T 14-10-2018 Amico_1248 ece8b3c5fe57323377222a7c03f72b29 677 SUPERFAMILY SSF52540 4 169 1.41E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1248 ece8b3c5fe57323377222a7c03f72b29 677 Pfam PF02421 Ferrous iron transport protein B 5 158 3.4E-65 T 14-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 Amico_1248 ece8b3c5fe57323377222a7c03f72b29 677 Pfam PF07670 Nucleoside recognition 362 455 1.8E-14 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Amico_1248 ece8b3c5fe57323377222a7c03f72b29 677 Pfam PF07670 Nucleoside recognition 522 645 1.2E-28 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Amico_1248 ece8b3c5fe57323377222a7c03f72b29 677 TIGRFAM TIGR00437 feoB: ferrous iron transport protein B 10 641 3.6E-199 T 14-10-2018 IPR003373 Ferrous iron transport protein B GO:0005525|GO:0015093|GO:0015684|GO:0016021 Amico_1248 ece8b3c5fe57323377222a7c03f72b29 677 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 2 159 6.9E-12 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_1248 ece8b3c5fe57323377222a7c03f72b29 677 Pfam PF07664 Ferrous iron transport protein B C terminus 465 517 2.4E-22 T 14-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 Amico_1248 ece8b3c5fe57323377222a7c03f72b29 677 Gene3D G3DSA:3.40.50.300 5 172 2.6E-47 T 14-10-2018 Amico_0109 6af2091ddcbd1402e458be5ebef4c818 192 PIRSF PIRSF006102 1 192 6.8E-51 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Amico_0109 6af2091ddcbd1402e458be5ebef4c818 192 Pfam PF02508 Rnf-Nqr subunit, membrane protein 4 190 2.2E-57 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Amico_0109 6af2091ddcbd1402e458be5ebef4c818 192 TIGRFAM TIGR01943 rnfA: electron transport complex, RnfABCDGE type, A subunit 1 190 8.8E-75 T 14-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 Amico_0109 6af2091ddcbd1402e458be5ebef4c818 192 Hamap MF_00459 Ion-translocating oxidoreductase complex subunit A [rsxA]. 1 191 24.821 T 14-10-2018 IPR011293 Ion-translocating oxidoreductase complex, subunit RnfA/RsxA GO:0022900 Amico_1605 5e3d76adf12c550bd379e4991ca1d67b 256 Gene3D G3DSA:3.30.450.40 82 256 1.8E-52 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_1605 5e3d76adf12c550bd379e4991ca1d67b 256 SUPERFAMILY SSF46785 11 84 1.05E-14 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1605 5e3d76adf12c550bd379e4991ca1d67b 256 SMART SM00346 10 100 6.5E-20 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_1605 5e3d76adf12c550bd379e4991ca1d67b 256 Pfam PF01614 Bacterial transcriptional regulator 131 251 2.9E-29 T 14-10-2018 IPR014757 Transcription regulator IclR, C-terminal Amico_1605 5e3d76adf12c550bd379e4991ca1d67b 256 SUPERFAMILY SSF55781 75 254 3.6E-45 T 14-10-2018 Amico_1605 5e3d76adf12c550bd379e4991ca1d67b 256 Gene3D G3DSA:1.10.10.10 9 81 6.1E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1605 5e3d76adf12c550bd379e4991ca1d67b 256 Pfam PF09339 IclR helix-turn-helix domain 12 61 1.0E-12 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_0163 c64a7a6f0d0470ce6712e69865ae9870 400 Gene3D G3DSA:3.90.1150.10 4 374 3.2E-153 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0163 c64a7a6f0d0470ce6712e69865ae9870 400 Gene3D G3DSA:3.40.640.10 15 256 3.2E-153 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0163 c64a7a6f0d0470ce6712e69865ae9870 400 TIGRFAM TIGR03402 FeS_nifS: cysteine desulfurase NifS 4 384 3.9E-177 T 14-10-2018 IPR017772 Cysteine desulfurase NifS, bacterial/archaeal GO:0006520|GO:0030170|GO:0031071 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 Amico_0163 c64a7a6f0d0470ce6712e69865ae9870 400 ProSitePatterns PS00595 Aminotransferases class-V pyridoxal-phosphate attachment site. 193 212 - T 14-10-2018 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site Amico_0163 c64a7a6f0d0470ce6712e69865ae9870 400 Hamap MF_00331 Cysteine desulfurase IscS [iscS]. 1 393 50.809 T 14-10-2018 IPR010240 Cysteine desulfurase IscS GO:0030170|GO:0031071|GO:0044571 KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250|Reactome: R-HSA-1362409|Reactome: R-HSA-947581 Amico_0163 c64a7a6f0d0470ce6712e69865ae9870 400 SUPERFAMILY SSF53383 4 376 3.16E-109 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0163 c64a7a6f0d0470ce6712e69865ae9870 400 Pfam PF00266 Aminotransferase class-V 4 366 5.5E-84 T 14-10-2018 IPR000192 Aminotransferase class V domain Amico_0163 c64a7a6f0d0470ce6712e69865ae9870 400 PIRSF PIRSF005572 1 382 2.1E-133 T 14-10-2018 IPR016454 Cysteine desulfurase KEGG: 00730+2.8.1.7|MetaCyc: PWY-7250 Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 PIRSF PIRSF002158 3 275 3.5E-100 T 14-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 Hamap MF_01320_B 50S ribosomal protein L2 [rplB]. 1 273 47.13 T 14-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 Gene3D G3DSA:4.10.950.10 197 274 1.3E-33 T 14-10-2018 IPR014726 Ribosomal protein L2, domain 3 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 TIGRFAM TIGR01171 rplB_bact: ribosomal protein uL2 3 273 5.4E-130 T 14-10-2018 IPR005880 Ribosomal protein L2, bacterial/organellar-type GO:0003723|GO:0003735|GO:0006412|GO:0015934|GO:0016740 Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 SMART SM01382 124 252 9.9E-88 T 14-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 Pfam PF00181 Ribosomal Proteins L2, RNA binding domain 42 117 1.1E-32 T 14-10-2018 IPR022666 Ribosomal Proteins L2, RNA binding domain GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 SMART SM01383 42 118 3.5E-44 T 14-10-2018 IPR002171 Ribosomal protein L2 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 Gene3D G3DSA:2.30.30.30 118 196 1.0E-33 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 Gene3D G3DSA:2.40.50.140 1 114 9.3E-47 T 14-10-2018 Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 ProSitePatterns PS00467 Ribosomal protein L2 signature. 218 229 - T 14-10-2018 IPR022671 Ribosomal protein L2, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 SUPERFAMILY SSF50104 126 272 1.5E-59 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 SUPERFAMILY SSF50249 3 125 1.85E-49 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0630 a2ac5f66b761dfbeaa9132a1df494210 275 Pfam PF03947 Ribosomal Proteins L2, C-terminal domain 125 250 4.7E-56 T 14-10-2018 IPR022669 Ribosomal protein L2, C-terminal GO:0003735|GO:0005840|GO:0006412 Amico_0761 c9221585886ae0d932380fabec3ad7fb 267 Hamap MF_00921 Putative pyruvate, phosphate dikinase regulatory protein. 4 267 54.323 T 14-10-2018 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein Amico_0761 c9221585886ae0d932380fabec3ad7fb 267 Pfam PF03618 Kinase/pyrophosphorylase 6 262 9.5E-93 T 14-10-2018 IPR005177 Bifunctional kinase-pyrophosphorylase GO:0005524|GO:0016772 Amico_0975 87296374863aab970c7433edd74e6868 362 Gene3D G3DSA:3.30.1480.10 3 131 5.9E-39 T 14-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 Amico_0975 87296374863aab970c7433edd74e6868 362 Hamap MF_00945_B Transcription termination/antitermination protein NusA [nusA]. 4 361 28.563 T 14-10-2018 IPR030842 Transcription termination/antitermination protein NusA, bacterial GO:0006353|GO:0031564 Amico_0975 87296374863aab970c7433edd74e6868 362 Pfam PF13184 NusA-like KH domain 233 300 1.8E-26 T 14-10-2018 IPR025249 KH domain, NusA-like GO:0003723 Amico_0975 87296374863aab970c7433edd74e6868 362 SUPERFAMILY SSF54814 203 280 3.99E-29 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Amico_0975 87296374863aab970c7433edd74e6868 362 SUPERFAMILY SSF50249 135 202 3.51E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0975 87296374863aab970c7433edd74e6868 362 SUPERFAMILY SSF54814 282 344 2.35E-13 T 14-10-2018 IPR009019 K homology domain superfamily, prokaryotic type GO:0003723 Amico_0975 87296374863aab970c7433edd74e6868 362 SMART SM00316 136 203 3.0E-8 T 14-10-2018 IPR022967 RNA-binding domain, S1 Amico_0975 87296374863aab970c7433edd74e6868 362 Gene3D G3DSA:2.40.50.140 132 201 5.6E-20 T 14-10-2018 Amico_0975 87296374863aab970c7433edd74e6868 362 Gene3D G3DSA:3.30.300.20 282 358 2.9E-24 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Amico_0975 87296374863aab970c7433edd74e6868 362 Pfam PF08529 NusA N-terminal domain 6 127 8.5E-35 T 14-10-2018 IPR013735 Transcription factor NusA, N-terminal GO:0003700|GO:0031554 Amico_0975 87296374863aab970c7433edd74e6868 362 TIGRFAM TIGR01953 NusA: transcription termination factor NusA 7 345 8.6E-119 T 14-10-2018 IPR010213 Transcription termination factor NusA GO:0003723 Amico_0975 87296374863aab970c7433edd74e6868 362 SMART SM00322 238 304 0.013 T 14-10-2018 IPR004087 K Homology domain GO:0003676 Amico_0975 87296374863aab970c7433edd74e6868 362 SMART SM00322 305 362 4.0 T 14-10-2018 IPR004087 K Homology domain GO:0003676 Amico_0975 87296374863aab970c7433edd74e6868 362 SUPERFAMILY SSF69705 5 129 1.1E-34 T 14-10-2018 IPR036555 NusA, N-terminal domain superfamily GO:0003700|GO:0031554 Amico_0975 87296374863aab970c7433edd74e6868 362 Gene3D G3DSA:3.30.300.20 202 280 1.6E-33 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Amico_0973 2f4b50cd1f6255f552b8d0fc1b9f6dfc 110 SUPERFAMILY SSF55315 4 88 7.66E-10 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like Amico_0973 2f4b50cd1f6255f552b8d0fc1b9f6dfc 110 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 6 64 7.5E-6 T 14-10-2018 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 Amico_0973 2f4b50cd1f6255f552b8d0fc1b9f6dfc 110 Gene3D G3DSA:3.30.1330.30 2 104 1.1E-16 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like Amico_1105 cdadbfff6913e1fb496d8094f1e139d2 106 Gene3D G3DSA:3.10.450.40 5 106 1.2E-9 T 14-10-2018 Amico_1105 cdadbfff6913e1fb496d8094f1e139d2 106 SUPERFAMILY SSF160719 17 105 1.44E-16 T 14-10-2018 Amico_1105 cdadbfff6913e1fb496d8094f1e139d2 106 Pfam PF04965 Gene 25-like lysozyme 21 104 2.4E-7 T 14-10-2018 IPR007048 GpW/Gp25/anti-adapter protein IraD Amico_0700 5e9640f2f9b9bf84a5cba23599f33ce3 88 TIGRFAM TIGR00952 S15_bact: ribosomal protein uS15 4 87 9.3E-40 T 14-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0700 5e9640f2f9b9bf84a5cba23599f33ce3 88 Pfam PF00312 Ribosomal protein S15 7 87 8.7E-39 T 14-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0700 5e9640f2f9b9bf84a5cba23599f33ce3 88 SMART SM01387 7 87 2.3E-52 T 14-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0700 5e9640f2f9b9bf84a5cba23599f33ce3 88 Hamap MF_01343_B 30S ribosomal protein S15 [rpsO]. 2 88 23.303 T 14-10-2018 IPR005290 Ribosomal protein S15, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0700 5e9640f2f9b9bf84a5cba23599f33ce3 88 ProDom PD157043 RIBOSOMAL S15 RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 30S CHLOROPLAST S15 MITOCHONDRIAL TYPE 10 87 2.0E-21 T 14-10-2018 Amico_0700 5e9640f2f9b9bf84a5cba23599f33ce3 88 SUPERFAMILY SSF47060 2 87 1.03E-36 T 14-10-2018 IPR009068 S15/NS1, RNA-binding Amico_0700 5e9640f2f9b9bf84a5cba23599f33ce3 88 ProSitePatterns PS00362 Ribosomal protein S15 signature. 38 68 - T 14-10-2018 IPR000589 Ribosomal protein S15 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0700 5e9640f2f9b9bf84a5cba23599f33ce3 88 Gene3D G3DSA:1.10.287.10 1 88 1.4E-37 T 14-10-2018 Amico_1616 2de262644c515a03676d030e9ec2b476 394 Pfam PF01546 Peptidase family M20/M25/M40 74 387 2.0E-36 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1616 2de262644c515a03676d030e9ec2b476 394 Pfam PF07687 Peptidase dimerisation domain 189 281 6.5E-10 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1616 2de262644c515a03676d030e9ec2b476 394 PIRSF PIRSF005962 1 394 1.7E-124 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_1616 2de262644c515a03676d030e9ec2b476 394 Gene3D G3DSA:3.40.630.10 17 376 8.0E-134 T 14-10-2018 Amico_1616 2de262644c515a03676d030e9ec2b476 394 SUPERFAMILY SSF55031 184 301 1.57E-27 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1616 2de262644c515a03676d030e9ec2b476 394 SUPERFAMILY SSF53187 6 392 3.02E-81 T 14-10-2018 Amico_1616 2de262644c515a03676d030e9ec2b476 394 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 17 379 1.9E-106 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_1616 2de262644c515a03676d030e9ec2b476 394 Gene3D G3DSA:3.30.70.360 184 298 8.0E-134 T 14-10-2018 Amico_0876 7bd79efa600fe12523a3810e87aa127f 212 TIGRFAM TIGR00758 UDG_fam4: uracil-DNA glycosylase, family 4 32 192 5.5E-63 T 14-10-2018 IPR005273 Uracil-DNA glycosylase family 4 Amico_0876 7bd79efa600fe12523a3810e87aa127f 212 Gene3D G3DSA:3.40.470.10 20 212 2.1E-74 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Amico_0876 7bd79efa600fe12523a3810e87aa127f 212 Pfam PF03167 Uracil DNA glycosylase superfamily 46 196 2.5E-46 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Amico_0876 7bd79efa600fe12523a3810e87aa127f 212 SMART SM00987 46 197 1.6E-39 T 14-10-2018 Amico_0876 7bd79efa600fe12523a3810e87aa127f 212 SMART SM00986 46 197 1.6E-39 T 14-10-2018 IPR005122 Uracil-DNA glycosylase-like Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Amico_0876 7bd79efa600fe12523a3810e87aa127f 212 SUPERFAMILY SSF52141 22 206 1.11E-64 T 14-10-2018 IPR036895 Uracil-DNA glycosylase-like domain superfamily Reactome: R-HSA-110328|Reactome: R-HSA-110329|Reactome: R-HSA-110357 Amico_0168 fc2c3098637c68d5a31796b8e259d388 315 SUPERFAMILY SSF161111 8 214 2.35E-51 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Amico_0168 fc2c3098637c68d5a31796b8e259d388 315 Pfam PF16916 Dimerisation domain of Zinc Transporter 217 294 3.1E-22 T 14-10-2018 IPR027470 Cation efflux protein, cytoplasmic domain Amico_0168 fc2c3098637c68d5a31796b8e259d388 315 SUPERFAMILY SSF160240 216 295 2.09E-19 T 14-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 Amico_0168 fc2c3098637c68d5a31796b8e259d388 315 Pfam PF01545 Cation efflux family 15 213 5.2E-48 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Amico_0168 fc2c3098637c68d5a31796b8e259d388 315 TIGRFAM TIGR01297 CDF: cation diffusion facilitator family transporter 14 295 1.0E-65 T 14-10-2018 IPR002524 Cation efflux protein GO:0006812|GO:0008324|GO:0016021|GO:0055085 Amico_0168 fc2c3098637c68d5a31796b8e259d388 315 Gene3D G3DSA:3.30.70.1350 214 296 9.3E-20 T 14-10-2018 IPR036837 Cation efflux protein, cytoplasmic domain superfamily Reactome: R-HSA-435368 Amico_0168 fc2c3098637c68d5a31796b8e259d388 315 Gene3D G3DSA:1.20.1510.10 10 213 1.8E-58 T 14-10-2018 IPR027469 Cation efflux transmembrane domain superfamily Amico_0137 1b47b30ca5703736cced49b853fd676a 442 Gene3D G3DSA:3.40.50.720 169 442 3.4E-92 T 14-10-2018 Amico_0137 1b47b30ca5703736cced49b853fd676a 442 PIRSF PIRSF000106 3 434 2.1E-85 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Amico_0137 1b47b30ca5703736cced49b853fd676a 442 Pfam PF03949 Malic enzyme, NAD binding domain 172 400 7.6E-21 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Amico_0137 1b47b30ca5703736cced49b853fd676a 442 SMART SM01274 26 159 2.3E-77 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Amico_0137 1b47b30ca5703736cced49b853fd676a 442 SUPERFAMILY SSF53223 18 169 1.08E-54 T 14-10-2018 Amico_0137 1b47b30ca5703736cced49b853fd676a 442 Gene3D G3DSA:3.40.50.10380 1 168 6.9E-72 T 14-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 Amico_0137 1b47b30ca5703736cced49b853fd676a 442 SUPERFAMILY SSF51735 171 432 5.39E-68 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0137 1b47b30ca5703736cced49b853fd676a 442 Pfam PF00390 Malic enzyme, N-terminal domain 30 159 2.4E-28 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Amico_0137 1b47b30ca5703736cced49b853fd676a 442 SMART SM00919 171 401 1.8E-101 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Amico_0706 b511b4c375b0d2faab480e29c72b7f17 119 ProSitePatterns PS00937 Ribosomal protein L20 signature. 54 70 - T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0706 b511b4c375b0d2faab480e29c72b7f17 119 Pfam PF00453 Ribosomal protein L20 3 109 2.6E-44 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0706 b511b4c375b0d2faab480e29c72b7f17 119 Gene3D G3DSA:1.10.720.90 2 55 4.6E-19 T 14-10-2018 Amico_0706 b511b4c375b0d2faab480e29c72b7f17 119 PRINTS PR00062 Ribosomal protein L20 signature 42 71 4.7E-35 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0706 b511b4c375b0d2faab480e29c72b7f17 119 PRINTS PR00062 Ribosomal protein L20 signature 75 101 4.7E-35 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0706 b511b4c375b0d2faab480e29c72b7f17 119 PRINTS PR00062 Ribosomal protein L20 signature 12 41 4.7E-35 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0706 b511b4c375b0d2faab480e29c72b7f17 119 SUPERFAMILY SSF74731 2 117 3.14E-44 T 14-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0706 b511b4c375b0d2faab480e29c72b7f17 119 Hamap MF_00382 50S ribosomal protein L20 [rplT]. 2 115 27.429 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0706 b511b4c375b0d2faab480e29c72b7f17 119 Gene3D G3DSA:1.10.1900.20 56 118 3.7E-29 T 14-10-2018 IPR035566 Ribosomal protein L20, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0706 b511b4c375b0d2faab480e29c72b7f17 119 TIGRFAM TIGR01032 rplT_bact: ribosomal protein bL20 1 114 8.3E-45 T 14-10-2018 IPR005813 Ribosomal protein L20 GO:0003735|GO:0005622|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0706 b511b4c375b0d2faab480e29c72b7f17 119 ProDom PD002389 RIBOSOMAL RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN L20 50S L20 CHLOROPLAST BACTERIAL ORGANELLE 20 71 2.0E-5 T 14-10-2018 Amico_0657 ba78d70b814457234de064cb585c6614 117 Pfam PF01196 Ribosomal protein L17 20 116 7.0E-32 T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0657 ba78d70b814457234de064cb585c6614 117 TIGRFAM TIGR00059 L17: ribosomal protein bL17 8 117 7.1E-39 T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0657 ba78d70b814457234de064cb585c6614 117 SUPERFAMILY SSF64263 1 116 1.7E-44 T 14-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0657 ba78d70b814457234de064cb585c6614 117 Gene3D G3DSA:3.90.1030.10 1 117 1.5E-44 T 14-10-2018 IPR036373 Ribosomal protein L17 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0657 ba78d70b814457234de064cb585c6614 117 Hamap MF_01368 50S ribosomal protein L17 [rplQ]. 5 116 25.76 T 14-10-2018 IPR000456 Ribosomal protein L17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0794 eb1c5ccf4c56de19a1d1fa6167ff2e70 69 SUPERFAMILY SSF54862 6 65 3.25E-15 T 14-10-2018 Amico_0794 eb1c5ccf4c56de19a1d1fa6167ff2e70 69 Pfam PF13237 4Fe-4S dicluster domain 7 56 2.1E-9 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_0794 eb1c5ccf4c56de19a1d1fa6167ff2e70 69 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 45 56 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_0794 eb1c5ccf4c56de19a1d1fa6167ff2e70 69 Gene3D G3DSA:3.30.70.3270 37 69 8.8E-6 T 14-10-2018 Amico_0794 eb1c5ccf4c56de19a1d1fa6167ff2e70 69 Gene3D G3DSA:3.30.70.20 2 36 7.1E-6 T 14-10-2018 Amico_0794 eb1c5ccf4c56de19a1d1fa6167ff2e70 69 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 14 25 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1021 6be6b5cbb8108b5d70f3bd704740d764 310 Gene3D G3DSA:3.10.25.10 208 310 4.9E-22 T 14-10-2018 IPR037022 Formyl transferase, C-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Amico_1021 6be6b5cbb8108b5d70f3bd704740d764 310 SUPERFAMILY SSF53328 1 208 5.49E-50 T 14-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Amico_1021 6be6b5cbb8108b5d70f3bd704740d764 310 Pfam PF00551 Formyl transferase 1 179 6.1E-33 T 14-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Amico_1021 6be6b5cbb8108b5d70f3bd704740d764 310 TIGRFAM TIGR00460 fmt: methionyl-tRNA formyltransferase 1 303 2.3E-68 T 14-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Amico_1021 6be6b5cbb8108b5d70f3bd704740d764 310 Hamap MF_00182 Methionyl-tRNA formyltransferase [fmt]. 1 303 26.907 T 14-10-2018 IPR005794 Methionyl-tRNA formyltransferase GO:0004479|GO:0071951 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9|Reactome: R-HSA-5368286 Amico_1021 6be6b5cbb8108b5d70f3bd704740d764 310 Pfam PF02911 Formyl transferase, C-terminal domain 205 300 4.3E-22 T 14-10-2018 IPR005793 Formyl transferase, C-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Amico_1021 6be6b5cbb8108b5d70f3bd704740d764 310 Gene3D G3DSA:3.40.50.170 1 207 5.2E-57 T 14-10-2018 Amico_1021 6be6b5cbb8108b5d70f3bd704740d764 310 SUPERFAMILY SSF50486 206 308 2.67E-25 T 14-10-2018 IPR011034 Formyl transferase-like, C-terminal domain superfamily GO:0003824 Amico_1614 93e234332ecafa3e9c8889f0273419ef 254 SMART SM01001 122 254 3.2E-31 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Amico_1614 93e234332ecafa3e9c8889f0273419ef 254 Pfam PF00731 AIR carboxylase 125 249 3.7E-16 T 14-10-2018 IPR000031 PurE domain GO:0006189 Reactome: R-HSA-73817 Amico_1614 93e234332ecafa3e9c8889f0273419ef 254 SUPERFAMILY SSF52255 125 249 4.45E-28 T 14-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 Amico_1614 93e234332ecafa3e9c8889f0273419ef 254 Gene3D G3DSA:3.40.50.7700 124 254 2.7E-33 T 14-10-2018 IPR035893 PurE domain superfamily Reactome: R-HSA-73817 Amico_0760 b00c117bb6ca0993f8a7d54336ec04d0 687 Pfam PF02092 Glycyl-tRNA synthetase beta subunit 6 545 1.9E-196 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0760 b00c117bb6ca0993f8a7d54336ec04d0 687 Pfam PF05746 DALR anticodon binding domain 580 678 4.0E-11 T 14-10-2018 IPR008909 DALR anticodon binding GO:0004814|GO:0005524|GO:0006420 Amico_0760 b00c117bb6ca0993f8a7d54336ec04d0 687 SUPERFAMILY SSF47323 580 678 7.19E-7 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0760 b00c117bb6ca0993f8a7d54336ec04d0 687 Gene3D G3DSA:1.10.730.10 575 682 2.4E-6 T 14-10-2018 Amico_0760 b00c117bb6ca0993f8a7d54336ec04d0 687 SUPERFAMILY SSF109604 344 490 2.2E-12 T 14-10-2018 Amico_0760 b00c117bb6ca0993f8a7d54336ec04d0 687 Hamap MF_00255 Glycine--tRNA ligase beta subunit [glyS]. 3 685 24.31 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0760 b00c117bb6ca0993f8a7d54336ec04d0 687 TIGRFAM TIGR00211 glyS: glycine--tRNA ligase, beta subunit 1 685 2.3E-201 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0760 b00c117bb6ca0993f8a7d54336ec04d0 687 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 7 20 1.5E-33 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0760 b00c117bb6ca0993f8a7d54336ec04d0 687 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 317 333 1.5E-33 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0760 b00c117bb6ca0993f8a7d54336ec04d0 687 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 50 62 1.5E-33 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0760 b00c117bb6ca0993f8a7d54336ec04d0 687 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 245 260 1.5E-33 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0760 b00c117bb6ca0993f8a7d54336ec04d0 687 PRINTS PR01045 Glycyl-tRNA synthetase beta subunit signature 395 414 1.5E-33 T 14-10-2018 IPR015944 Glycine-tRNA ligase, beta subunit GO:0000166|GO:0004820|GO:0005524|GO:0005737|GO:0006426 KEGG: 00970+6.1.1.14 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 Gene3D G3DSA:3.50.50.60 7 300 9.6E-110 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 1.7E-33 T 14-10-2018 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 228 244 1.7E-33 T 14-10-2018 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 144 162 1.7E-33 T 14-10-2018 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 254 276 1.7E-33 T 14-10-2018 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 102 120 1.7E-33 T 14-10-2018 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 SUPERFAMILY SSF51905 2 300 4.84E-47 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 58 68 1.1E-66 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 230 251 1.1E-66 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 264 282 1.1E-66 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 125 137 1.1E-66 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 5 27 1.1E-66 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 38 53 1.1E-66 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 192 208 1.1E-66 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 103 111 1.1E-66 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 PRINTS PR00469 Pyridine nucleotide disulphide reductase class-II signature 140 164 1.1E-66 T 14-10-2018 IPR000103 Pyridine nucleotide-disulphide oxidoreductase, class-II GO:0016491|GO:0055114 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 TIGRFAM TIGR01292 TRX_reduct: thioredoxin-disulfide reductase 5 301 2.5E-110 T 14-10-2018 IPR005982 Thioredoxin reductase GO:0004791|GO:0005737|GO:0019430|GO:0055114 KEGG: 00450+1.8.1.9 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 Gene3D G3DSA:3.50.50.60 119 241 9.6E-110 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 290 2.1E-50 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Amico_0727 abc2fe9e3791a3eda8c20117f1a8a260 395 ProSitePatterns PS00573 Pyridine nucleotide-disulphide oxidoreductases class-II active site. 132 152 - T 14-10-2018 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site GO:0016491|GO:0055114 Amico_1218 4452bcbe7d69183de77ce1026543e0b7 433 Pfam PF02321 Outer membrane efflux protein 33 218 2.3E-29 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Amico_1218 4452bcbe7d69183de77ce1026543e0b7 433 Pfam PF02321 Outer membrane efflux protein 241 422 3.5E-34 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Amico_1218 4452bcbe7d69183de77ce1026543e0b7 433 SUPERFAMILY SSF56954 5 429 1.18E-87 T 14-10-2018 Amico_1218 4452bcbe7d69183de77ce1026543e0b7 433 Gene3D G3DSA:1.20.1600.10 20 430 1.7E-87 T 14-10-2018 Amico_1047 98d89dc96e9ce7e1dd889c726a018127 335 Pfam PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded 6 313 6.9E-141 T 14-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 Amico_1047 98d89dc96e9ce7e1dd889c726a018127 335 PIRSF PIRSF004532 4 323 1.1E-139 T 14-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 Amico_1047 98d89dc96e9ce7e1dd889c726a018127 335 Gene3D G3DSA:3.40.190.90 126 287 6.9E-130 T 14-10-2018 Amico_1047 98d89dc96e9ce7e1dd889c726a018127 335 TIGRFAM TIGR00330 glpX: fructose-1,6-bisphosphatase, class II 5 317 1.0E-121 T 14-10-2018 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase GO:0006071|GO:0006094|GO:0042132 KEGG: 00010+3.1.3.11|KEGG: 00030+3.1.3.11|KEGG: 00051+3.1.3.11|KEGG: 00680+3.1.3.11|KEGG: 00710+3.1.3.11|MetaCyc: PWY-5484 Amico_1047 98d89dc96e9ce7e1dd889c726a018127 335 SUPERFAMILY SSF56655 4 315 6.68E-109 T 14-10-2018 Amico_1047 98d89dc96e9ce7e1dd889c726a018127 335 Gene3D G3DSA:3.30.540.10 10 313 6.9E-130 T 14-10-2018 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 TIGRFAM TIGR02707 butyr_kinase: butyrate kinase 4 352 1.1E-145 T 14-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 Hamap MF_00542 Probable butyrate kinase [buk]. 1 364 145.757 T 14-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 Gene3D G3DSA:3.30.420.40 137 331 8.9E-139 T 14-10-2018 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 5 16 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 SUPERFAMILY SSF53067 118 346 7.69E-48 T 14-10-2018 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 Pfam PF00871 Acetokinase family 5 341 5.5E-58 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 PIRSF PIRSF036458 1 355 1.5E-146 T 14-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 Gene3D G3DSA:3.30.420.40 5 354 8.9E-139 T 14-10-2018 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 SUPERFAMILY SSF53067 3 172 3.72E-62 T 14-10-2018 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 PRINTS PR00471 Acetate kinase family signature 5 16 9.1E-15 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 PRINTS PR00471 Acetate kinase family signature 179 200 9.1E-15 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 PRINTS PR00471 Acetate kinase family signature 273 286 9.1E-15 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 PRINTS PR00471 Acetate kinase family signature 296 312 9.1E-15 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1842 e8fbef057cf3366a850447aac50b389a 364 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 179 196 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1100 b911dc26bf643d222f36ebc9b4ff437f 125 Pfam PF08291 Peptidase M15 4 111 2.5E-22 T 14-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 Amico_1100 b911dc26bf643d222f36ebc9b4ff437f 125 SUPERFAMILY SSF55166 5 123 1.14E-26 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Amico_1100 b911dc26bf643d222f36ebc9b4ff437f 125 Gene3D G3DSA:3.30.1380.10 7 124 1.0E-21 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Amico_1708 3c60adcfe5e6281a9f9210c360e70fd0 466 SUPERFAMILY SSF103378 12 447 7.85E-103 T 14-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Amico_1708 3c60adcfe5e6281a9f9210c360e70fd0 466 Gene3D G3DSA:3.30.1330.120 277 409 3.6E-98 T 14-10-2018 Amico_1708 3c60adcfe5e6281a9f9210c360e70fd0 466 Gene3D G3DSA:1.10.4100.10 31 425 3.6E-98 T 14-10-2018 Amico_1708 3c60adcfe5e6281a9f9210c360e70fd0 466 Pfam PF03972 MmgE/PrpD family 15 433 2.4E-104 T 14-10-2018 IPR005656 MmgE/PrpD GO:0016829 Amico_1042 7ccb194480b1e2472532a82a40a5bbee 813 SUPERFAMILY SSF54211 570 761 2.16E-33 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_1042 7ccb194480b1e2472532a82a40a5bbee 813 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 64 83 7.3E-6 T 14-10-2018 Amico_1042 7ccb194480b1e2472532a82a40a5bbee 813 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 681 700 7.3E-6 T 14-10-2018 Amico_1042 7ccb194480b1e2472532a82a40a5bbee 813 PRINTS PR00830 Endopeptidase La (Lon) serine protease (S16) signature 651 670 7.3E-6 T 14-10-2018 Amico_1042 7ccb194480b1e2472532a82a40a5bbee 813 Pfam PF13654 AAA domain 28 544 6.7E-195 T 14-10-2018 Amico_1042 7ccb194480b1e2472532a82a40a5bbee 813 Gene3D G3DSA:3.30.230.10 545 779 8.9E-98 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Amico_1042 7ccb194480b1e2472532a82a40a5bbee 813 Gene3D G3DSA:3.40.50.300 259 454 1.0E-60 T 14-10-2018 Amico_1042 7ccb194480b1e2472532a82a40a5bbee 813 Gene3D G3DSA:3.40.50.300 7 165 2.6E-28 T 14-10-2018 Amico_1042 7ccb194480b1e2472532a82a40a5bbee 813 Gene3D G3DSA:1.10.8.60 455 542 7.2E-16 T 14-10-2018 Amico_1042 7ccb194480b1e2472532a82a40a5bbee 813 Pfam PF05362 Lon protease (S16) C-terminal proteolytic domain 654 754 2.4E-7 T 14-10-2018 IPR008269 Peptidase S16, Lon proteolytic domain GO:0004176|GO:0004252|GO:0006508 Amico_1042 7ccb194480b1e2472532a82a40a5bbee 813 SUPERFAMILY SSF52540 34 557 1.43E-11 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0160 853edced6c2f033d0edae4a9f3e01f4f 373 Pfam PF00155 Aminotransferase class I and II 50 352 2.4E-42 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_0160 853edced6c2f033d0edae4a9f3e01f4f 373 Gene3D G3DSA:3.40.640.10 54 271 1.4E-111 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0160 853edced6c2f033d0edae4a9f3e01f4f 373 SUPERFAMILY SSF53383 38 368 3.42E-69 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0160 853edced6c2f033d0edae4a9f3e01f4f 373 Gene3D G3DSA:3.90.1150.10 15 361 1.4E-111 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0160 853edced6c2f033d0edae4a9f3e01f4f 373 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 218 231 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Amico_1759 582c4d4fe1adeb4c3a87decbb6511736 436 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 427 9.5E-95 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1759 582c4d4fe1adeb4c3a87decbb6511736 436 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 428 7.5E-91 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1759 582c4d4fe1adeb4c3a87decbb6511736 436 PIRSF PIRSF006066 5 436 1.3E-75 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0461 60bb468702ac47a52a641c006fa3c995 392 ProSitePatterns PS00868 Cys/Met metabolism enzymes pyridoxal-phosphate attachment site. 198 212 - T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Amico_0461 60bb468702ac47a52a641c006fa3c995 392 SUPERFAMILY SSF53383 19 389 6.52E-125 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0461 60bb468702ac47a52a641c006fa3c995 392 Gene3D G3DSA:3.40.640.10 3 257 2.3E-100 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0461 60bb468702ac47a52a641c006fa3c995 392 Gene3D G3DSA:3.90.1150.10 258 392 1.5E-53 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0461 60bb468702ac47a52a641c006fa3c995 392 Pfam PF01053 Cys/Met metabolism PLP-dependent enzyme 6 389 2.0E-148 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Amico_0461 60bb468702ac47a52a641c006fa3c995 392 PIRSF PIRSF001434 1 392 7.8E-151 T 14-10-2018 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme GO:0030170 Reactome: R-HSA-1614558|Reactome: R-HSA-1614603|Reactome: R-HSA-2408508 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 2 316 1.8E-52 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 Gene3D G3DSA:3.50.50.60 131 260 7.5E-76 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 4 23 6.4E-29 T 14-10-2018 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 281 303 6.4E-29 T 14-10-2018 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 166 184 6.4E-29 T 14-10-2018 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 119 137 6.4E-29 T 14-10-2018 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 SUPERFAMILY SSF51905 1 325 6.82E-49 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 Gene3D G3DSA:3.30.390.30 329 448 1.6E-41 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 Gene3D G3DSA:3.50.50.60 2 318 7.5E-76 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 ProSitePatterns PS00076 Pyridine nucleotide-disulphide oxidoreductases class-I active site. 36 46 - T 14-10-2018 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site GO:0016668|GO:0055114 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PIRSF PIRSF000350 1 55 1.0E-8 T 14-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PIRSF PIRSF000350 57 451 5.3E-52 T 14-10-2018 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I GO:0009055|GO:0016491 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 SUPERFAMILY SSF55424 331 446 1.1E-38 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 396 411 1.8E-56 T 14-10-2018 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 35 50 1.8E-56 T 14-10-2018 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 418 438 1.8E-56 T 14-10-2018 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 331 352 1.8E-56 T 14-10-2018 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 3 25 1.8E-56 T 14-10-2018 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 166 191 1.8E-56 T 14-10-2018 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 296 303 1.8E-56 T 14-10-2018 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 254 268 1.8E-56 T 14-10-2018 Amico_1583 08e0c1a6e77390850ea8e83f7c716bc5 451 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 335 443 1.8E-34 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Amico_0847 60761bc7f720805869e94d9471e0eb34 550 SUPERFAMILY SSF52540 2 520 4.13E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0847 60761bc7f720805869e94d9471e0eb34 550 PIRSF PIRSF003128 1 550 4.1E-104 T 14-10-2018 IPR004604 DNA recombination/repair protein RecN GO:0005524|GO:0006281|GO:0006310 Amico_0847 60761bc7f720805869e94d9471e0eb34 550 Pfam PF02463 RecF/RecN/SMC N terminal domain 3 512 1.4E-14 T 14-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Amico_0847 60761bc7f720805869e94d9471e0eb34 550 Gene3D G3DSA:3.40.50.300 1 228 1.6E-30 T 14-10-2018 Amico_0847 60761bc7f720805869e94d9471e0eb34 550 Gene3D G3DSA:3.40.50.300 250 550 1.0E-41 T 14-10-2018 Amico_0847 60761bc7f720805869e94d9471e0eb34 550 SMART SM00382 21 510 8.3E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1518 048e4ad3a768e4212027a2fbb82ed95a 180 SUPERFAMILY SSF56235 5 178 1.4E-53 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Amico_1518 048e4ad3a768e4212027a2fbb82ed95a 180 Gene3D G3DSA:3.60.20.10 4 179 5.7E-62 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Amico_1518 048e4ad3a768e4212027a2fbb82ed95a 180 Pfam PF00227 Proteasome subunit 6 178 1.2E-23 T 14-10-2018 IPR001353 Proteasome, subunit alpha/beta GO:0004298|GO:0005839|GO:0051603 Reactome: R-HSA-1169091|Reactome: R-HSA-1234176|Reactome: R-HSA-1236974|Reactome: R-HSA-1236978|Reactome: R-HSA-174084|Reactome: R-HSA-174113|Reactome: R-HSA-174154|Reactome: R-HSA-174178|Reactome: R-HSA-174184|Reactome: R-HSA-180534|Reactome: R-HSA-180585|Reactome: R-HSA-187577|Reactome: R-HSA-195253|Reactome: R-HSA-202424|Reactome: R-HSA-211733|Reactome: R-HSA-2467813|Reactome: R-HSA-2871837|Reactome: R-HSA-349425|Reactome: R-HSA-350562|Reactome: R-HSA-382556|Reactome: R-HSA-450408|Reactome: R-HSA-4608870|Reactome: R-HSA-4641257|Reactome: R-HSA-4641258|Reactome: R-HSA-5358346|Reactome: R-HSA-5362768|Reactome: R-HSA-5607761|Reactome: R-HSA-5607764|Reactome: R-HSA-5610780|Reactome: R-HSA-5610783|Reactome: R-HSA-5610785|Reactome: R-HSA-5632684|Reactome: R-HSA-5658442|Reactome: R-HSA-5668541|Reactome: R-HSA-5676590|Reactome: R-HSA-5678895|Reactome: R-HSA-5687128|Reactome: R-HSA-5689603|Reactome: R-HSA-5689880|Reactome: R-HSA-68827|Reactome: R-HSA-68949|Reactome: R-HSA-69017|Reactome: R-HSA-69229|Reactome: R-HSA-69481|Reactome: R-HSA-69601|Reactome: R-HSA-8852276|Reactome: R-HSA-8854050|Reactome: R-HSA-8939236|Reactome: R-HSA-8939902|Reactome: R-HSA-8941858|Reactome: R-HSA-8948751|Reactome: R-HSA-8951664|Reactome: R-HSA-9010553|Reactome: R-HSA-9020702|Reactome: R-HSA-9604323|Reactome: R-HSA-983168 Amico_1518 048e4ad3a768e4212027a2fbb82ed95a 180 PIRSF PIRSF039093 1 180 1.7E-80 T 14-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Amico_1518 048e4ad3a768e4212027a2fbb82ed95a 180 Hamap MF_00248 ATP-dependent protease subunit HslV [hslV]. 7 178 38.517 T 14-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Amico_1518 048e4ad3a768e4212027a2fbb82ed95a 180 TIGRFAM TIGR03692 ATP_dep_HslV: ATP-dependent protease HslVU, peptidase subunit 8 177 2.0E-78 T 14-10-2018 IPR022281 ATP-dependent protease, HslV subunit GO:0004298|GO:0006508|GO:0009376 Amico_1384 42b75dd5ccd84624311c5ed37eb8b6c4 53 PRINTS PR00163 Rubredoxin signature 3 19 3.4E-13 T 14-10-2018 IPR024935 Rubredoxin domain GO:0005506 Amico_1384 42b75dd5ccd84624311c5ed37eb8b6c4 53 PRINTS PR00163 Rubredoxin signature 33 49 3.4E-13 T 14-10-2018 IPR024935 Rubredoxin domain GO:0005506 Amico_1384 42b75dd5ccd84624311c5ed37eb8b6c4 53 PIRSF PIRSF000071 1 53 2.0E-30 T 14-10-2018 IPR024922 Rubredoxin GO:0005506|GO:0009055 Amico_1384 42b75dd5ccd84624311c5ed37eb8b6c4 53 Gene3D G3DSA:2.20.28.10 1 52 8.4E-31 T 14-10-2018 Amico_1384 42b75dd5ccd84624311c5ed37eb8b6c4 53 ProSitePatterns PS00202 Rubredoxin signature. 33 43 - T 14-10-2018 IPR018527 Rubredoxin, iron-binding site GO:0046872 Amico_1384 42b75dd5ccd84624311c5ed37eb8b6c4 53 SUPERFAMILY SSF57802 1 52 7.07E-25 T 14-10-2018 Amico_1384 42b75dd5ccd84624311c5ed37eb8b6c4 53 Pfam PF00301 Rubredoxin 3 49 3.5E-27 T 14-10-2018 IPR024935 Rubredoxin domain GO:0005506 Amico_0933 c15397a58c8a2cd0d5f12eb23ff173ee 208 Pfam PF14022 Protein of unknown function (DUF4238) 4 176 5.9E-11 T 14-10-2018 IPR025332 Protein of unknown function DUF4238 Amico_0655 556764917c76ec33a6ee5fd699a7ae52 209 SMART SM01390 3 98 8.3E-44 T 14-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Amico_0655 556764917c76ec33a6ee5fd699a7ae52 209 Gene3D G3DSA:3.10.290.10 98 194 4.1E-81 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Amico_0655 556764917c76ec33a6ee5fd699a7ae52 209 SUPERFAMILY SSF55174 3 209 1.11E-66 T 14-10-2018 Amico_0655 556764917c76ec33a6ee5fd699a7ae52 209 Gene3D G3DSA:1.10.1050.10 6 209 4.1E-81 T 14-10-2018 Amico_0655 556764917c76ec33a6ee5fd699a7ae52 209 Pfam PF00163 Ribosomal protein S4/S9 N-terminal domain 3 98 4.8E-27 T 14-10-2018 IPR001912 Ribosomal protein S4/S9, N-terminal GO:0005622|GO:0019843 Reactome: R-HSA-6790901|Reactome: R-HSA-6791226 Amico_0655 556764917c76ec33a6ee5fd699a7ae52 209 ProSitePatterns PS00632 Ribosomal protein S4 signature. 97 121 - T 14-10-2018 IPR018079 Ribosomal protein S4, conserved site GO:0005622|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6790901|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0655 556764917c76ec33a6ee5fd699a7ae52 209 Hamap MF_01306_B 30S ribosomal protein S4 [rpsD]. 1 209 34.145 T 14-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Amico_0655 556764917c76ec33a6ee5fd699a7ae52 209 Pfam PF01479 S4 domain 99 146 3.9E-18 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0655 556764917c76ec33a6ee5fd699a7ae52 209 TIGRFAM TIGR01017 rpsD_bact: ribosomal protein uS4 3 209 2.0E-71 T 14-10-2018 IPR005709 Ribosomal protein S4, bacterial-type GO:0003735|GO:0006412|GO:0015935 Amico_0655 556764917c76ec33a6ee5fd699a7ae52 209 SMART SM00363 99 163 2.6E-18 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0172 d590776decb36ca0d675df85e14040da 874 Gene3D G3DSA:3.40.50.300 154 347 4.9E-74 T 14-10-2018 Amico_0172 d590776decb36ca0d675df85e14040da 874 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 299 311 - T 14-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Amico_0172 d590776decb36ca0d675df85e14040da 874 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 776 856 1.0E-25 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Amico_0172 d590776decb36ca0d675df85e14040da 874 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 17 68 1.7E-15 T 14-10-2018 IPR004176 Clp, N-terminal Amico_0172 d590776decb36ca0d675df85e14040da 874 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 97 150 4.1E-6 T 14-10-2018 IPR004176 Clp, N-terminal Amico_0172 d590776decb36ca0d675df85e14040da 874 Pfam PF07724 AAA domain (Cdc48 subfamily) 604 769 4.4E-55 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_0172 d590776decb36ca0d675df85e14040da 874 ProSitePatterns PS00871 Chaperonins clpA/B signature 2. 639 657 - T 14-10-2018 IPR028299 ClpA/B, conserved site 2 Amico_0172 d590776decb36ca0d675df85e14040da 874 SMART SM01086 776 865 5.9E-34 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Amico_0172 d590776decb36ca0d675df85e14040da 874 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 654 672 2.4E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Amico_0172 d590776decb36ca0d675df85e14040da 874 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 609 627 2.4E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Amico_0172 d590776decb36ca0d675df85e14040da 874 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 716 730 2.4E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Amico_0172 d590776decb36ca0d675df85e14040da 874 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 683 701 2.4E-42 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Amico_0172 d590776decb36ca0d675df85e14040da 874 Gene3D G3DSA:3.40.50.300 558 774 2.2E-86 T 14-10-2018 Amico_0172 d590776decb36ca0d675df85e14040da 874 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 208 338 1.9E-13 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_0172 d590776decb36ca0d675df85e14040da 874 SUPERFAMILY SSF52540 162 553 1.0E-97 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0172 d590776decb36ca0d675df85e14040da 874 SUPERFAMILY SSF52540 554 865 1.78E-83 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0172 d590776decb36ca0d675df85e14040da 874 Gene3D G3DSA:3.40.50.300 348 552 1.0E-70 T 14-10-2018 Amico_0172 d590776decb36ca0d675df85e14040da 874 Gene3D G3DSA:1.10.1780.10 1 153 5.5E-36 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Amico_0172 d590776decb36ca0d675df85e14040da 874 SMART SM00382 605 749 2.1E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0172 d590776decb36ca0d675df85e14040da 874 SMART SM00382 203 347 1.0E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0172 d590776decb36ca0d675df85e14040da 874 SUPERFAMILY SSF81923 5 161 2.65E-39 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Amico_0172 d590776decb36ca0d675df85e14040da 874 Gene3D G3DSA:1.10.8.60 776 869 6.3E-28 T 14-10-2018 Amico_0172 d590776decb36ca0d675df85e14040da 874 TIGRFAM TIGR03346 chaperone_ClpB: ATP-dependent chaperone protein ClpB 6 865 0.0 T 14-10-2018 IPR017730 Chaperonin ClpB GO:0005737|GO:0009408|GO:0042026 Amico_0027 5a63cc1585bee452246af08fe1933a08 354 SUPERFAMILY SSF51569 62 348 4.03E-62 T 14-10-2018 Amico_0027 5a63cc1585bee452246af08fe1933a08 354 SMART SM01133 72 330 3.3E-38 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 Amico_0027 5a63cc1585bee452246af08fe1933a08 354 Gene3D G3DSA:3.20.20.70 45 354 8.9E-65 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0027 5a63cc1585bee452246af08fe1933a08 354 Pfam PF01791 DeoC/LacD family aldolase 73 330 3.5E-61 T 14-10-2018 IPR002915 DeoC/FbaB/ lacD aldolase GO:0016829 Reactome: R-HSA-6798695|Reactome: R-HSA-71336 Amico_1655 cab2dd25cf2b7a0416c7f30dea0963a1 364 SUPERFAMILY SSF53092 4 106 1.2E-10 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Amico_1655 cab2dd25cf2b7a0416c7f30dea0963a1 364 Gene3D G3DSA:3.90.230.10 138 363 2.9E-75 T 14-10-2018 Amico_1655 cab2dd25cf2b7a0416c7f30dea0963a1 364 SUPERFAMILY SSF55920 139 363 3.27E-72 T 14-10-2018 IPR036005 Creatinase/aminopeptidase-like Amico_1655 cab2dd25cf2b7a0416c7f30dea0963a1 364 Pfam PF01321 Creatinase/Prolidase N-terminal domain 6 106 3.1E-8 T 14-10-2018 IPR000587 Creatinase, N-terminal GO:0016787 Amico_1655 cab2dd25cf2b7a0416c7f30dea0963a1 364 Pfam PF00557 Metallopeptidase family M24 146 348 7.2E-59 T 14-10-2018 IPR000994 Peptidase M24 Amico_1655 cab2dd25cf2b7a0416c7f30dea0963a1 364 Gene3D G3DSA:3.40.350.10 2 123 3.2E-15 T 14-10-2018 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal Amico_1289 58bf4731cf983c2eba04556bd24fa746 494 Gene3D G3DSA:3.30.70.1450 404 486 6.1E-17 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Amico_1289 58bf4731cf983c2eba04556bd24fa746 494 Pfam PF02080 TrkA-C domain 417 483 8.8E-17 T 14-10-2018 IPR006037 Regulator of K+ conductance, C-terminal GO:0006813|GO:0008324 Amico_1289 58bf4731cf983c2eba04556bd24fa746 494 Pfam PF00999 Sodium/hydrogen exchanger family 13 386 4.7E-52 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Amico_1289 58bf4731cf983c2eba04556bd24fa746 494 SUPERFAMILY SSF116726 406 483 1.44E-15 T 14-10-2018 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily GO:0006813 Amico_1289 58bf4731cf983c2eba04556bd24fa746 494 Gene3D G3DSA:1.20.1530.20 7 393 8.1E-25 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily Amico_0741 a724e1835841bc8bd393b6ab30de24d0 610 Gene3D G3DSA:3.60.20.10 2 241 4.5E-77 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Amico_0741 a724e1835841bc8bd393b6ab30de24d0 610 Hamap MF_00164 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] [glmS]. 1 610 38.679 T 14-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Amico_0741 a724e1835841bc8bd393b6ab30de24d0 610 SUPERFAMILY SSF56235 2 225 1.29E-70 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Amico_0741 a724e1835841bc8bd393b6ab30de24d0 610 TIGRFAM TIGR01135 glmS: glutamine-fructose-6-phosphate transaminase (isomerizing) 2 610 2.1E-238 T 14-10-2018 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising GO:0004360|GO:1901137 KEGG: 00250+2.6.1.16|KEGG: 00520+2.6.1.16|MetaCyc: PWY-6749|Reactome: R-HSA-446210 Amico_0741 a724e1835841bc8bd393b6ab30de24d0 610 Gene3D G3DSA:3.40.50.10490 248 609 8.8E-138 T 14-10-2018 Amico_0741 a724e1835841bc8bd393b6ab30de24d0 610 Gene3D G3DSA:3.40.50.10490 448 595 8.8E-138 T 14-10-2018 Amico_0741 a724e1835841bc8bd393b6ab30de24d0 610 SUPERFAMILY SSF53697 246 610 7.42E-104 T 14-10-2018 Amico_0741 a724e1835841bc8bd393b6ab30de24d0 610 Pfam PF01380 SIS domain 291 416 2.6E-24 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Amico_0741 a724e1835841bc8bd393b6ab30de24d0 610 Pfam PF01380 SIS domain 463 589 4.6E-24 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Amico_0741 a724e1835841bc8bd393b6ab30de24d0 610 Pfam PF13522 Glutamine amidotransferase domain 61 193 8.5E-22 T 14-10-2018 Amico_0672 220806e9cb11ec6554180145ed6888ad 121 Pfam PF07085 DRTGG domain 5 103 4.0E-8 T 14-10-2018 IPR010766 DRTGG KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Amico_0672 220806e9cb11ec6554180145ed6888ad 121 SUPERFAMILY SSF75138 1 108 4.58E-24 T 14-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Amico_0738 784d6d5adf7431240cadca65e596435c 408 Gene3D G3DSA:2.170.120.40 130 219 9.9E-8 T 14-10-2018 Amico_0738 784d6d5adf7431240cadca65e596435c 408 Gene3D G3DSA:2.170.120.40 225 311 2.1E-11 T 14-10-2018 Amico_0738 784d6d5adf7431240cadca65e596435c 408 Gene3D G3DSA:2.170.120.30 44 129 1.5E-13 T 14-10-2018 Amico_0738 784d6d5adf7431240cadca65e596435c 408 Pfam PF07949 YbbR-like protein 134 214 1.7E-8 T 14-10-2018 IPR012505 YbbR-like Amico_0738 784d6d5adf7431240cadca65e596435c 408 Pfam PF07949 YbbR-like protein 228 309 3.1E-9 T 14-10-2018 IPR012505 YbbR-like Amico_0738 784d6d5adf7431240cadca65e596435c 408 Gene3D G3DSA:2.170.120.30 314 406 2.4E-9 T 14-10-2018 Amico_0213 608d9859b1cdedd6e9c7a9699aa2272a 420 Gene3D G3DSA:1.20.1250.20 217 420 3.0E-12 T 14-10-2018 Amico_0213 608d9859b1cdedd6e9c7a9699aa2272a 420 Pfam PF07690 Major Facilitator Superfamily 20 367 3.0E-27 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Amico_0213 608d9859b1cdedd6e9c7a9699aa2272a 420 Gene3D G3DSA:1.20.1250.20 7 198 3.1E-23 T 14-10-2018 Amico_0213 608d9859b1cdedd6e9c7a9699aa2272a 420 SUPERFAMILY SSF103473 8 419 1.31E-48 T 14-10-2018 IPR036259 MFS transporter superfamily Amico_1451 844beb35a117cdf4b75e83c5aee2b414 58 Gene3D G3DSA:2.20.28.30 1 45 5.0E-8 T 14-10-2018 Amico_1451 844beb35a117cdf4b75e83c5aee2b414 58 SUPERFAMILY SSF63393 3 37 8.89E-7 T 14-10-2018 IPR029040 RNA polymerase subunit RPABC4/transcription elongation factor Spt4 Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-674695|Reactome: R-HSA-6796648|Reactome: R-HSA-6807505|Reactome: R-HSA-75955 Amico_0148 7e9145851942344e09071148cd00ca08 349 SUPERFAMILY SSF50998 25 162 4.84E-35 T 14-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Amico_0148 7e9145851942344e09071148cd00ca08 349 Pfam PF13360 PQQ-like domain 27 114 2.6E-15 T 14-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat Amico_0148 7e9145851942344e09071148cd00ca08 349 Pfam PF13360 PQQ-like domain 124 196 8.7E-13 T 14-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat Amico_0148 7e9145851942344e09071148cd00ca08 349 Pfam PF13360 PQQ-like domain 235 347 7.5E-16 T 14-10-2018 IPR002372 Pyrrolo-quinoline quinone repeat Amico_0148 7e9145851942344e09071148cd00ca08 349 Gene3D G3DSA:2.40.10.480 128 196 3.4E-17 T 14-10-2018 Amico_0148 7e9145851942344e09071148cd00ca08 349 Gene3D G3DSA:2.130.10.10 23 127 2.2E-25 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Amico_0148 7e9145851942344e09071148cd00ca08 349 Gene3D G3DSA:2.130.10.10 201 349 1.2E-33 T 14-10-2018 IPR015943 WD40/YVTN repeat-like-containing domain superfamily GO:0005515 Amico_0148 7e9145851942344e09071148cd00ca08 349 SMART SM00564 166 198 0.34 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Amico_0148 7e9145851942344e09071148cd00ca08 349 SMART SM00564 206 238 200.0 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Amico_0148 7e9145851942344e09071148cd00ca08 349 SMART SM00564 126 158 9.8E-6 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Amico_0148 7e9145851942344e09071148cd00ca08 349 SMART SM00564 246 278 4.4E-7 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Amico_0148 7e9145851942344e09071148cd00ca08 349 SMART SM00564 41 73 6.7E-8 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Amico_0148 7e9145851942344e09071148cd00ca08 349 SMART SM00564 287 318 1.4E-4 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Amico_0148 7e9145851942344e09071148cd00ca08 349 SMART SM00564 80 113 6.4 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Amico_0148 7e9145851942344e09071148cd00ca08 349 SMART SM00564 326 349 120.0 T 14-10-2018 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat Amico_0148 7e9145851942344e09071148cd00ca08 349 SUPERFAMILY SSF50998 121 348 5.96E-44 T 14-10-2018 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily Amico_0592 38a55fcc2fe5b8a41603857a8e902b9a 464 SUPERFAMILY SSF82866 258 452 3.79E-41 T 14-10-2018 Amico_0592 38a55fcc2fe5b8a41603857a8e902b9a 464 Gene3D G3DSA:3.30.1360.200 130 277 4.0E-40 T 14-10-2018 Amico_0592 38a55fcc2fe5b8a41603857a8e902b9a 464 Pfam PF02355 Protein export membrane protein 284 449 1.4E-15 T 14-10-2018 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial Amico_0592 38a55fcc2fe5b8a41603857a8e902b9a 464 Gene3D G3DSA:1.20.1640.10 296 455 4.1E-10 T 14-10-2018 Amico_0592 38a55fcc2fe5b8a41603857a8e902b9a 464 PRINTS PR00702 Acriflavin resistance protein family signature 350 374 1.3E-7 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0592 38a55fcc2fe5b8a41603857a8e902b9a 464 PRINTS PR00702 Acriflavin resistance protein family signature 425 448 1.3E-7 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0592 38a55fcc2fe5b8a41603857a8e902b9a 464 PRINTS PR00702 Acriflavin resistance protein family signature 297 320 1.3E-7 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0592 38a55fcc2fe5b8a41603857a8e902b9a 464 Pfam PF07549 SecD/SecF GG Motif 30 49 2.2E-5 T 14-10-2018 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site Amico_0592 38a55fcc2fe5b8a41603857a8e902b9a 464 Hamap MF_01463_B Protein translocase subunit SecD [secD]. 2 463 41.326 T 14-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Amico_0592 38a55fcc2fe5b8a41603857a8e902b9a 464 TIGRFAM TIGR00916 2A0604s01: protein-export membrane protein, SecD/SecF family 211 441 5.2E-76 T 14-10-2018 IPR022645 Protein-export membrane protein SecD/SecF, bacterial Amico_0592 38a55fcc2fe5b8a41603857a8e902b9a 464 Gene3D G3DSA:3.30.70.3400 32 119 1.4E-28 T 14-10-2018 Amico_0592 38a55fcc2fe5b8a41603857a8e902b9a 464 TIGRFAM TIGR01129 secD: protein-export membrane protein SecD 32 448 3.2E-135 T 14-10-2018 IPR005791 Protein translocase subunit SecD GO:0006886|GO:0015450 Amico_0488 c960c68869f12fe3c33668d49e4718bb 231 Gene3D G3DSA:3.40.50.300 2 229 1.4E-66 T 14-10-2018 Amico_0488 c960c68869f12fe3c33668d49e4718bb 231 SMART SM00382 32 220 5.5E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0488 c960c68869f12fe3c33668d49e4718bb 231 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0488 c960c68869f12fe3c33668d49e4718bb 231 Pfam PF00005 ABC transporter 23 171 4.9E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0488 c960c68869f12fe3c33668d49e4718bb 231 SUPERFAMILY SSF52540 3 227 3.31E-75 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 22 201 2.6E-9 T 14-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 PIRSF PIRSF006439 2 622 8.1E-212 T 14-10-2018 IPR017721 Indolepyruvate ferredoxin oxidoreductase, alpha subunit GO:0043805|GO:0055114 Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 TIGRFAM TIGR03336 IOR_alpha: indolepyruvate ferredoxin oxidoreductase, alpha subunit 10 616 6.9E-204 T 14-10-2018 IPR017721 Indolepyruvate ferredoxin oxidoreductase, alpha subunit GO:0043805|GO:0055114 Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 SUPERFAMILY SSF52518 367 554 8.65E-23 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 SUPERFAMILY SSF52922 244 307 8.32E-7 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 Gene3D G3DSA:3.40.50.970 1 191 2.5E-48 T 14-10-2018 Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 Gene3D G3DSA:3.40.50.970 389 553 3.2E-15 T 14-10-2018 Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 Gene3D G3DSA:3.30.70.20 556 619 3.1E-11 T 14-10-2018 Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 397 545 3.0E-19 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 Pfam PF00037 4Fe-4S binding domain 595 616 4.5E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 SUPERFAMILY SSF52518 10 225 3.31E-49 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 601 612 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1531 a581af53eacab9213b86d4c51a1c61d4 622 SUPERFAMILY SSF54862 550 618 2.56E-14 T 14-10-2018 Amico_1193 1c30f1e00b93ddb9848e342de671b853 411 Gene3D G3DSA:3.40.630.10 4 402 6.0E-165 T 14-10-2018 Amico_1193 1c30f1e00b93ddb9848e342de671b853 411 Pfam PF01546 Peptidase family M20/M25/M40 141 404 1.9E-11 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1193 1c30f1e00b93ddb9848e342de671b853 411 TIGRFAM TIGR01882 peptidase-T: peptidase T 3 404 1.7E-155 T 14-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 Amico_1193 1c30f1e00b93ddb9848e342de671b853 411 SUPERFAMILY SSF55031 211 322 1.52E-36 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1193 1c30f1e00b93ddb9848e342de671b853 411 Gene3D G3DSA:3.30.70.360 211 321 6.0E-165 T 14-10-2018 Amico_1193 1c30f1e00b93ddb9848e342de671b853 411 PIRSF PIRSF037215 1 409 1.4E-171 T 14-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 Amico_1193 1c30f1e00b93ddb9848e342de671b853 411 Pfam PF07687 Peptidase dimerisation domain 209 302 2.5E-8 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1193 1c30f1e00b93ddb9848e342de671b853 411 SUPERFAMILY SSF53187 2 407 2.35E-71 T 14-10-2018 Amico_1193 1c30f1e00b93ddb9848e342de671b853 411 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 74 83 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Amico_1193 1c30f1e00b93ddb9848e342de671b853 411 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 140 179 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Amico_1193 1c30f1e00b93ddb9848e342de671b853 411 Hamap MF_00550 Peptidase T [pepT]. 1 406 52.44 T 14-10-2018 IPR010161 Peptidase M20B, tripeptide aminopeptidase GO:0005737|GO:0006518|GO:0008270|GO:0045148 Amico_1244 b04fbde7027ac3549b803eaa7f0a416c 531 Gene3D G3DSA:3.40.50.1000 287 498 9.4E-50 T 14-10-2018 IPR023214 HAD superfamily Amico_1244 b04fbde7027ac3549b803eaa7f0a416c 531 Gene3D G3DSA:1.10.150.240 27 123 1.2E-54 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Amico_1244 b04fbde7027ac3549b803eaa7f0a416c 531 SUPERFAMILY SSF56784 15 250 4.4E-35 T 14-10-2018 IPR036412 HAD-like superfamily Amico_1244 b04fbde7027ac3549b803eaa7f0a416c 531 TIGRFAM TIGR00685 T6PP: trehalose-phosphatase 287 523 1.0E-50 T 14-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 Amico_1244 b04fbde7027ac3549b803eaa7f0a416c 531 TIGRFAM TIGR02009 PGMB-YQAB-SF: beta-phosphoglucomutase family hydrolase 16 223 6.3E-49 T 14-10-2018 IPR010976 Beta-phosphoglucomutase hydrolase Amico_1244 b04fbde7027ac3549b803eaa7f0a416c 531 Pfam PF13419 Haloacid dehalogenase-like hydrolase 18 219 2.0E-16 T 14-10-2018 Amico_1244 b04fbde7027ac3549b803eaa7f0a416c 531 Gene3D G3DSA:3.30.70.1020 367 443 9.4E-50 T 14-10-2018 Amico_1244 b04fbde7027ac3549b803eaa7f0a416c 531 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 118 223 1.6E-12 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Amico_1244 b04fbde7027ac3549b803eaa7f0a416c 531 Gene3D G3DSA:3.40.50.1000 19 250 1.2E-54 T 14-10-2018 IPR023214 HAD superfamily Amico_1244 b04fbde7027ac3549b803eaa7f0a416c 531 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 287 485 6.0E-23 T 14-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 Amico_1244 b04fbde7027ac3549b803eaa7f0a416c 531 SUPERFAMILY SSF56784 287 523 1.89E-40 T 14-10-2018 IPR036412 HAD-like superfamily Amico_1244 b04fbde7027ac3549b803eaa7f0a416c 531 Pfam PF02358 Trehalose-phosphatase 289 509 6.7E-56 T 14-10-2018 IPR003337 Trehalose-phosphatase GO:0003824|GO:0005992 Amico_0644 f3fc02c56b76fb0f7bf95ebc3bfdec88 170 Pfam PF00333 Ribosomal protein S5, N-terminal domain 13 75 1.3E-25 T 14-10-2018 IPR013810 Ribosomal protein S5, N-terminal GO:0003723|GO:0003735|GO:0005840|GO:0006412 Amico_0644 f3fc02c56b76fb0f7bf95ebc3bfdec88 170 Hamap MF_01307_B 30S ribosomal protein S5 [rpsE]. 3 166 30.682 T 14-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Amico_0644 f3fc02c56b76fb0f7bf95ebc3bfdec88 170 SUPERFAMILY SSF54211 82 161 2.78E-24 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0644 f3fc02c56b76fb0f7bf95ebc3bfdec88 170 Gene3D G3DSA:3.30.160.20 3 75 1.4E-27 T 14-10-2018 Amico_0644 f3fc02c56b76fb0f7bf95ebc3bfdec88 170 SUPERFAMILY SSF54768 11 76 5.96E-20 T 14-10-2018 Amico_0644 f3fc02c56b76fb0f7bf95ebc3bfdec88 170 Pfam PF03719 Ribosomal protein S5, C-terminal domain 89 160 4.1E-29 T 14-10-2018 IPR005324 Ribosomal protein S5, C-terminal GO:0003735|GO:0005840|GO:0006412 Amico_0644 f3fc02c56b76fb0f7bf95ebc3bfdec88 170 Gene3D G3DSA:3.30.230.10 76 169 5.4E-33 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Amico_0644 f3fc02c56b76fb0f7bf95ebc3bfdec88 170 TIGRFAM TIGR01021 rpsE_bact: ribosomal protein uS5 12 163 1.0E-58 T 14-10-2018 IPR005712 Ribosomal protein S5, bacterial-type GO:0003735|GO:0006412|GO:0015935 Amico_1010 66c321ca9da363f628bdbf7c49175147 164 Gene3D G3DSA:3.90.79.10 8 163 1.7E-31 T 14-10-2018 Amico_1010 66c321ca9da363f628bdbf7c49175147 164 Pfam PF00293 NUDIX domain 12 120 5.8E-18 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Amico_1010 66c321ca9da363f628bdbf7c49175147 164 PRINTS PR00502 NUDIX hydrolase family signature 51 66 8.9E-5 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Amico_1010 66c321ca9da363f628bdbf7c49175147 164 PRINTS PR00502 NUDIX hydrolase family signature 37 51 8.9E-5 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Amico_1010 66c321ca9da363f628bdbf7c49175147 164 ProSitePatterns PS00893 Nudix box signature. 42 63 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Amico_1010 66c321ca9da363f628bdbf7c49175147 164 SUPERFAMILY SSF55811 5 132 2.03E-27 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Amico_0225 be3c05d3e10812cc2af4128c25bd8fe2 422 Gene3D G3DSA:3.40.50.11440 31 267 4.6E-81 T 14-10-2018 Amico_0225 be3c05d3e10812cc2af4128c25bd8fe2 422 Pfam PF09861 Domain of unknown function (DUF2088) 38 197 5.8E-33 T 14-10-2018 IPR018657 LarA-like, N-terminal GO:0050043 KEGG: 00620+5.1.2.1 Amico_0225 be3c05d3e10812cc2af4128c25bd8fe2 422 Gene3D G3DSA:3.90.226.30 12 380 4.6E-81 T 14-10-2018 Amico_0021 092c3b5ebeb1c0eec390d45b9dde723b 144 Pfam PF00072 Response regulator receiver domain 12 130 3.4E-6 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_0021 092c3b5ebeb1c0eec390d45b9dde723b 144 SUPERFAMILY SSF52172 11 133 1.99E-14 T 14-10-2018 IPR011006 CheY-like superfamily Amico_0021 092c3b5ebeb1c0eec390d45b9dde723b 144 Gene3D G3DSA:3.40.50.2300 2 140 1.2E-13 T 14-10-2018 Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 SUPERFAMILY SSF52540 434 673 1.98E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 Gene3D G3DSA:3.40.50.11180 27 204 1.1E-28 T 14-10-2018 Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 SMART SM00982 890 991 8.0E-13 T 14-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 SUPERFAMILY SSF52540 7 227 9.03E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 SUPERFAMILY SSF52540 672 878 1.02E-41 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 SMART SM00487 490 680 2.5E-33 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 Gene3D G3DSA:3.40.50.300 432 671 4.9E-212 T 14-10-2018 Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 Gene3D G3DSA:2.30.30.840 373 431 4.9E-212 T 14-10-2018 Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 Gene3D G3DSA:3.40.50.300 369 879 4.9E-212 T 14-10-2018 Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 Pfam PF00271 Helicase conserved C-terminal domain 694 799 3.9E-16 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 Pfam PF03461 TRCF domain 894 977 4.5E-17 T 14-10-2018 IPR005118 Transcription-repair-coupling factor, C-terminal domain GO:0006281 Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 SMART SM00490 716 800 8.8E-16 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 Pfam PF00270 DEAD/DEAH box helicase 496 654 2.7E-18 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 Gene3D G3DSA:3.90.1150.50 886 999 2.2E-19 T 14-10-2018 IPR037235 TRCF-like, C-terminal domain Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 SMART SM01058 369 466 1.1E-18 T 14-10-2018 IPR003711 CarD-like/TRCF domain Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 SUPERFAMILY SSF143517 882 982 4.05E-21 T 14-10-2018 IPR037235 TRCF-like, C-terminal domain Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 SUPERFAMILY SSF141259 369 423 1.31E-9 T 14-10-2018 IPR036101 CarD-like/TRCF domain superfamily Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 Pfam PF02559 CarD-like/TRCF domain 370 465 2.7E-16 T 14-10-2018 IPR003711 CarD-like/TRCF domain Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 Gene3D G3DSA:3.30.2060.10 108 197 1.1E-28 T 14-10-2018 Amico_0749 2d3a2bf782763392b52a1e24e79da40c 1025 Hamap MF_00969 Transcription-repair-coupling factor [mfd]. 21 976 24.119 T 14-10-2018 IPR004576 Transcription-repair coupling factor GO:0003684|GO:0005524|GO:0006281 Amico_0558 772c6d255973e0ee210ead87c631eeda 433 SUPERFAMILY SSF53649 1 373 1.64E-28 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Amico_0558 772c6d255973e0ee210ead87c631eeda 433 Gene3D G3DSA:3.40.720.10 4 399 3.9E-91 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Amico_0558 772c6d255973e0ee210ead87c631eeda 433 Pfam PF01676 Metalloenzyme superfamily 1 404 3.5E-33 T 14-10-2018 IPR006124 Metalloenzyme GO:0003824|GO:0046872 Amico_0558 772c6d255973e0ee210ead87c631eeda 433 Pfam PF10143 2,3-bisphosphoglycerate-independent phosphoglycerate mutase 37 212 1.1E-30 T 14-10-2018 IPR004456 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GO:0003824|GO:0046537 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0558 772c6d255973e0ee210ead87c631eeda 433 Gene3D G3DSA:3.30.70.2130 77 234 3.9E-91 T 14-10-2018 Amico_0558 772c6d255973e0ee210ead87c631eeda 433 TIGRFAM TIGR00306 apgM: phosphoglycerate mutase (2,3-diphosphoglycerate-independent), archaeal form 4 403 1.6E-97 T 14-10-2018 IPR004456 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GO:0003824|GO:0046537 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0558 772c6d255973e0ee210ead87c631eeda 433 PIRSF PIRSF006392 1 410 2.5E-104 T 14-10-2018 IPR004456 2,3-bisphosphoglycerate-independent phosphoglycerate mutase GO:0003824|GO:0046537 KEGG: 00010+5.4.2.12|KEGG: 00260+5.4.2.12|KEGG: 00680+5.4.2.12|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7124|MetaCyc: PWY-7218 Amico_0096 ad1d8a1070e522eea49026ce3368e05d 308 TIGRFAM TIGR01136 cysKM: cysteine synthase 12 306 1.7E-112 T 14-10-2018 IPR005856 Cysteine synthase GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Amico_0096 ad1d8a1070e522eea49026ce3368e05d 308 Gene3D G3DSA:3.40.50.1100 14 301 7.6E-108 T 14-10-2018 Amico_0096 ad1d8a1070e522eea49026ce3368e05d 308 TIGRFAM TIGR01139 cysK: cysteine synthase A 12 306 1.1E-112 T 14-10-2018 IPR005859 Cysteine synthase CysK GO:0004124|GO:0006535 KEGG: 00270+2.5.1.47|KEGG: 00920+2.5.1.47|MetaCyc: PWY-6936 Amico_0096 ad1d8a1070e522eea49026ce3368e05d 308 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 13 295 5.1E-62 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Amico_0096 ad1d8a1070e522eea49026ce3368e05d 308 SUPERFAMILY SSF53686 12 306 1.31E-93 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Amico_0096 ad1d8a1070e522eea49026ce3368e05d 308 Gene3D G3DSA:3.40.50.1100 46 147 7.6E-108 T 14-10-2018 Amico_1360 8e1b5290e0747da5dd0ca252ea985862 244 Pfam PF00483 Nucleotidyl transferase 6 235 2.7E-21 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Amico_1360 8e1b5290e0747da5dd0ca252ea985862 244 Gene3D G3DSA:3.90.550.10 5 237 4.3E-54 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_1360 8e1b5290e0747da5dd0ca252ea985862 244 SUPERFAMILY SSF53448 5 235 8.45E-53 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_0976 5dc595cb59d3e4f6dd3d2c914b99fbba 159 Pfam PF02576 RimP N-terminal domain 15 87 6.0E-20 T 14-10-2018 IPR028989 Ribosome maturation factor RimP, N-terminal Amico_0976 5dc595cb59d3e4f6dd3d2c914b99fbba 159 SUPERFAMILY SSF75420 9 87 5.23E-17 T 14-10-2018 IPR035956 RimP, N-terminal domain superfamily Amico_0976 5dc595cb59d3e4f6dd3d2c914b99fbba 159 Hamap MF_01077 Ribosome maturation factor RimP [rimP]. 9 159 21.165 T 14-10-2018 IPR003728 Ribosome maturation factor RimP GO:0042274 Amico_0976 5dc595cb59d3e4f6dd3d2c914b99fbba 159 SUPERFAMILY SSF74942 88 158 2.22E-16 T 14-10-2018 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily Amico_0976 5dc595cb59d3e4f6dd3d2c914b99fbba 159 Gene3D G3DSA:3.30.300.70 7 84 1.3E-17 T 14-10-2018 IPR035956 RimP, N-terminal domain superfamily Amico_0976 5dc595cb59d3e4f6dd3d2c914b99fbba 159 Pfam PF17384 RimP C-terminal SH3 domain 90 156 4.9E-16 T 14-10-2018 IPR028998 Ribosome maturation factor RimP, C-terminal Amico_0976 5dc595cb59d3e4f6dd3d2c914b99fbba 159 Gene3D G3DSA:2.30.30.180 93 156 2.5E-6 T 14-10-2018 Amico_0433 99ad3cd21ba636eb0f835adba5403010 185 SUPERFAMILY SSF55874 4 143 3.8E-25 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_0433 99ad3cd21ba636eb0f835adba5403010 185 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 5 103 9.2E-15 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_0433 99ad3cd21ba636eb0f835adba5403010 185 Gene3D G3DSA:3.30.565.10 2 109 8.8E-19 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_0433 99ad3cd21ba636eb0f835adba5403010 185 PRINTS PR00344 Bacterial sensor protein C-terminal signature 55 65 1.8E-6 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Amico_0433 99ad3cd21ba636eb0f835adba5403010 185 PRINTS PR00344 Bacterial sensor protein C-terminal signature 37 51 1.8E-6 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Amico_0433 99ad3cd21ba636eb0f835adba5403010 185 PRINTS PR00344 Bacterial sensor protein C-terminal signature 91 104 1.8E-6 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Amico_0433 99ad3cd21ba636eb0f835adba5403010 185 PRINTS PR00344 Bacterial sensor protein C-terminal signature 67 85 1.8E-6 T 14-10-2018 IPR004358 Signal transduction histidine kinase-related protein, C-terminal GO:0016310|GO:0016772 Reactome: R-HSA-70895 Amico_0433 99ad3cd21ba636eb0f835adba5403010 185 SMART SM00387 1 107 1.0E-8 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_1168 70edf9d12daff819a2dcad1127a40fc4 201 Gene3D G3DSA:3.40.50.170 2 201 6.0E-62 T 14-10-2018 Amico_1168 70edf9d12daff819a2dcad1127a40fc4 201 Hamap MF_01930 Phosphoribosylglycinamide formyltransferase [purN]. 3 187 26.567 T 14-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Amico_1168 70edf9d12daff819a2dcad1127a40fc4 201 TIGRFAM TIGR00639 PurN: phosphoribosylglycinamide formyltransferase 3 188 4.8E-54 T 14-10-2018 IPR004607 Phosphoribosylglycinamide formyltransferase GO:0004644|GO:0006189 KEGG: 00230+2.1.2.2|KEGG: 00670+2.1.2.2|MetaCyc: PWY-6121|MetaCyc: PWY-6613|Reactome: R-HSA-73817 Amico_1168 70edf9d12daff819a2dcad1127a40fc4 201 SUPERFAMILY SSF53328 3 195 3.27E-50 T 14-10-2018 IPR036477 Formyl transferase, N-terminal domain superfamily GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Amico_1168 70edf9d12daff819a2dcad1127a40fc4 201 Pfam PF00551 Formyl transferase 3 180 1.6E-43 T 14-10-2018 IPR002376 Formyl transferase, N-terminal GO:0009058|GO:0016742 KEGG: 00670+2.1.2.9|KEGG: 00970+2.1.2.9 Amico_0393 580ba6b42babd13fc56286c44ec82df4 190 SUPERFAMILY SSF55144 5 190 1.74E-36 T 14-10-2018 IPR009097 Cyclic phosphodiesterase Amico_0393 580ba6b42babd13fc56286c44ec82df4 190 Hamap MF_01940 RNA 2',3'-cyclic phosphodiesterase [thpR]. 5 190 23.793 T 14-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 Amico_0393 580ba6b42babd13fc56286c44ec82df4 190 Pfam PF13563 2'-5' RNA ligase superfamily 36 174 9.8E-13 T 14-10-2018 Amico_0393 580ba6b42babd13fc56286c44ec82df4 190 TIGRFAM TIGR02258 2_5_ligase: 2'-5' RNA ligase 5 190 7.4E-40 T 14-10-2018 IPR004175 RNA 2',3'-cyclic phosphodiesterase GO:0004113|GO:0008664 Amico_0393 580ba6b42babd13fc56286c44ec82df4 190 Gene3D G3DSA:3.90.1140.10 5 190 9.9E-47 T 14-10-2018 Amico_0605 943f62c5e4ae02f224c126940074c68d 225 SUPERFAMILY SSF63848 119 223 1.83E-25 T 14-10-2018 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily GO:0000902 Amico_0605 943f62c5e4ae02f224c126940074c68d 225 Gene3D G3DSA:2.160.20.70 115 225 4.2E-30 T 14-10-2018 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal GO:0000902 Amico_0605 943f62c5e4ae02f224c126940074c68d 225 Hamap MF_00267 Probable septum site-determining protein MinC [minC]. 10 224 18.507 T 14-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 Amico_0605 943f62c5e4ae02f224c126940074c68d 225 Pfam PF03775 Septum formation inhibitor MinC, C-terminal domain 122 220 3.7E-28 T 14-10-2018 IPR005526 Septum formation inhibitor MinC, C-terminal GO:0000902 Amico_0605 943f62c5e4ae02f224c126940074c68d 225 TIGRFAM TIGR01222 minC: septum site-determining protein MinC 93 222 2.6E-29 T 14-10-2018 IPR013033 Septum formation inhibitor MinC GO:0051726|GO:1901891 Amico_0335 82820a86f2a3186b82cfa7cef018fb67 334 SUPERFAMILY SSF81345 2 326 6.15E-69 T 14-10-2018 IPR037294 ABC transporter, BtuC-like Amico_0335 82820a86f2a3186b82cfa7cef018fb67 334 Pfam PF01032 FecCD transport family 17 326 1.2E-77 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 Amico_0335 82820a86f2a3186b82cfa7cef018fb67 334 Gene3D G3DSA:1.10.3470.10 2 331 4.6E-86 T 14-10-2018 IPR037294 ABC transporter, BtuC-like Amico_0162 94c9f54e65d96adad1beece206d854d6 138 Pfam PF02082 Transcriptional regulator 1 83 1.7E-27 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type Amico_0162 94c9f54e65d96adad1beece206d854d6 138 Gene3D G3DSA:1.10.10.10 1 138 8.2E-50 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0162 94c9f54e65d96adad1beece206d854d6 138 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 1 131 3.0E-41 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type Amico_0162 94c9f54e65d96adad1beece206d854d6 138 SUPERFAMILY SSF46785 2 134 2.45E-35 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0162 94c9f54e65d96adad1beece206d854d6 138 ProSitePatterns PS01332 Rrf2-type HTH domain signature. 50 68 - T 14-10-2018 IPR030489 Transcription regulator Rrf2-type, conserved site Amico_0243 0e57f9608efe5b1dd4802480808b2bb7 534 SMART SM00382 51 238 4.9E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0243 0e57f9608efe5b1dd4802480808b2bb7 534 SUPERFAMILY SSF52540 25 240 1.82E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0243 0e57f9608efe5b1dd4802480808b2bb7 534 Pfam PF00005 ABC transporter 43 190 1.3E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0243 0e57f9608efe5b1dd4802480808b2bb7 534 Gene3D G3DSA:3.40.50.300 275 514 1.4E-31 T 14-10-2018 Amico_0243 0e57f9608efe5b1dd4802480808b2bb7 534 Pfam PF00005 ABC transporter 295 446 5.2E-13 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0243 0e57f9608efe5b1dd4802480808b2bb7 534 ProSitePatterns PS00211 ABC transporters family signature. 423 437 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0243 0e57f9608efe5b1dd4802480808b2bb7 534 Gene3D G3DSA:3.40.50.300 10 265 1.3E-58 T 14-10-2018 Amico_0243 0e57f9608efe5b1dd4802480808b2bb7 534 SUPERFAMILY SSF52540 281 508 2.27E-34 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 Gene3D G3DSA:2.70.20.10 189 465 2.7E-147 T 14-10-2018 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 SUPERFAMILY SSF57783 584 626 1.39E-12 T 14-10-2018 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 Pfam PF01131 DNA topoisomerase 134 561 4.0E-117 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 Gene3D G3DSA:3.40.50.140 3 139 4.3E-48 T 14-10-2018 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 Gene3D G3DSA:1.10.460.10 140 564 2.7E-147 T 14-10-2018 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 SUPERFAMILY SSF56712 8 602 6.67E-176 T 14-10-2018 IPR023405 DNA topoisomerase, type IA, core domain Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 Pfam PF01751 Toprim domain 9 117 4.4E-24 T 14-10-2018 IPR006171 TOPRIM domain Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 SMART SM00437 256 519 3.4E-102 T 14-10-2018 IPR003602 DNA topoisomerase, type IA, DNA-binding domain GO:0003677|GO:0003916|GO:0006265 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 630 672 6.5E-12 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 674 690 1.5 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 Pfam PF01396 Topoisomerase DNA binding C4 zinc finger 590 627 4.7E-17 T 14-10-2018 IPR013498 DNA topoisomerase, type IA, zn finger GO:0003677|GO:0003916|GO:0005694|GO:0006265 Reactome: R-HSA-5685938|Reactome: R-HSA-5685942|Reactome: R-HSA-5693554|Reactome: R-HSA-5693568|Reactome: R-HSA-5693579|Reactome: R-HSA-5693607|Reactome: R-HSA-5693616|Reactome: R-HSA-6804756|Reactome: R-HSA-69473|Reactome: R-HSA-912446 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 384 400 2.3E-36 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 307 316 2.3E-36 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 481 495 2.3E-36 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 82 95 2.3E-36 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 PRINTS PR00417 Prokaryotic DNA topoisomerase I signature 167 185 2.3E-36 T 14-10-2018 IPR013497 DNA topoisomerase, type IA, central GO:0003677|GO:0003916|GO:0006265 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 Hamap MF_00952 DNA topoisomerase 1 [topA]. 8 659 51.402 T 14-10-2018 IPR028612 DNA topoisomerase I, type IA GO:0003677|GO:0003916|GO:0006265 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 Gene3D G3DSA:1.10.290.10 264 399 2.7E-147 T 14-10-2018 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 SMART SM00436 109 197 2.7E-50 T 14-10-2018 IPR003601 DNA topoisomerase, type IA, domain 2 GO:0003677|GO:0003916|GO:0006265 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 Gene3D G3DSA:3.30.65.10 574 632 4.4E-11 T 14-10-2018 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 TIGRFAM TIGR01051 topA_bact: DNA topoisomerase I 10 625 1.7E-220 T 14-10-2018 IPR005733 DNA topoisomerase I, bacterial-type GO:0003677|GO:0003917|GO:0006265 Amico_1521 376ae091d37f00d6d81287b142a6b4db 711 SMART SM00493 8 108 3.1E-27 T 14-10-2018 IPR006171 TOPRIM domain Amico_1093 337346b7a5aa3705d331252b1e8a32ea 331 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 144 165 3.7E-27 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Amico_1093 337346b7a5aa3705d331252b1e8a32ea 331 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 15 31 3.7E-27 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Amico_1093 337346b7a5aa3705d331252b1e8a32ea 331 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 66 85 3.7E-27 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Amico_1093 337346b7a5aa3705d331252b1e8a32ea 331 PRINTS PR01039 Tryptophanyl-tRNA synthetase signature 194 204 3.7E-27 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Amico_1093 337346b7a5aa3705d331252b1e8a32ea 331 Gene3D G3DSA:3.40.50.620 5 322 1.1E-120 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1093 337346b7a5aa3705d331252b1e8a32ea 331 Hamap MF_00140_B Tryptophan--tRNA ligase [trpS]. 2 328 34.877 T 14-10-2018 IPR024109 Tryptophan-tRNA ligase, bacterial-type GO:0004830 KEGG: 00970+6.1.1.2|Reactome: R-HSA-379726 Amico_1093 337346b7a5aa3705d331252b1e8a32ea 331 TIGRFAM TIGR00233 trpS: tryptophan--tRNA ligase 2 327 2.8E-91 T 14-10-2018 IPR002306 Tryptophan-tRNA ligase GO:0000166|GO:0004830|GO:0005524|GO:0005737|GO:0006436 KEGG: 00970+6.1.1.2 Amico_1093 337346b7a5aa3705d331252b1e8a32ea 331 SUPERFAMILY SSF52374 3 327 9.3E-89 T 14-10-2018 Amico_1093 337346b7a5aa3705d331252b1e8a32ea 331 Pfam PF00579 tRNA synthetases class I (W and Y) 4 281 1.3E-68 T 14-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_1093 337346b7a5aa3705d331252b1e8a32ea 331 Gene3D G3DSA:1.10.240.10 189 295 1.1E-120 T 14-10-2018 Amico_1093 337346b7a5aa3705d331252b1e8a32ea 331 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 20 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0055 326943747ae72c9ddb199f96a2674bfb 251 Gene3D G3DSA:3.40.50.300 1 240 7.2E-65 T 14-10-2018 Amico_0055 326943747ae72c9ddb199f96a2674bfb 251 SUPERFAMILY SSF52540 2 224 5.43E-60 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0055 326943747ae72c9ddb199f96a2674bfb 251 Pfam PF00005 ABC transporter 18 163 7.7E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0055 326943747ae72c9ddb199f96a2674bfb 251 SMART SM00382 27 213 1.5E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0055 326943747ae72c9ddb199f96a2674bfb 251 ProSitePatterns PS00211 ABC transporters family signature. 136 150 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0956 4d6ba49b10696d79823771df1cc5a77c 362 SMART SM00922 141 239 2.9E-24 T 14-10-2018 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal Amico_0956 4d6ba49b10696d79823771df1cc5a77c 362 ProSitePatterns PS00908 Mandelate racemase / muconate lactonizing enzyme family signature 1. 99 124 - T 14-10-2018 IPR018110 Mandelate racemase/muconate lactonizing enzyme, conserved site GO:0009063 Amico_0956 4d6ba49b10696d79823771df1cc5a77c 362 Gene3D G3DSA:3.20.20.120 116 352 1.8E-112 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Amico_0956 4d6ba49b10696d79823771df1cc5a77c 362 Pfam PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain 12 124 2.7E-22 T 14-10-2018 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain Amico_0956 4d6ba49b10696d79823771df1cc5a77c 362 SUPERFAMILY SSF54826 1 125 1.84E-33 T 14-10-2018 Amico_0956 4d6ba49b10696d79823771df1cc5a77c 362 Pfam PF13378 Enolase C-terminal domain-like 147 354 3.3E-45 T 14-10-2018 IPR029065 Enolase C-terminal domain-like Amico_0956 4d6ba49b10696d79823771df1cc5a77c 362 Gene3D G3DSA:3.30.390.10 1 354 1.8E-112 T 14-10-2018 IPR029017 Enolase-like, N-terminal Amico_0956 4d6ba49b10696d79823771df1cc5a77c 362 SUPERFAMILY SSF51604 112 354 4.06E-64 T 14-10-2018 IPR036849 Enolase-like, C-terminal domain superfamily Amico_0265 cf6767d62ac4d4746c1072f5e3ca6071 152 Pfam PF00582 Universal stress protein family 3 146 9.3E-29 T 14-10-2018 IPR006016 UspA Amico_0265 cf6767d62ac4d4746c1072f5e3ca6071 152 SUPERFAMILY SSF52402 3 148 3.52E-34 T 14-10-2018 Amico_0265 cf6767d62ac4d4746c1072f5e3ca6071 152 Gene3D G3DSA:3.40.50.620 1 146 1.4E-34 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0265 cf6767d62ac4d4746c1072f5e3ca6071 152 PRINTS PR01438 Universal stress protein signature 124 146 2.2E-13 T 14-10-2018 IPR006015 Universal stress protein A Amico_0265 cf6767d62ac4d4746c1072f5e3ca6071 152 PRINTS PR01438 Universal stress protein signature 2 20 2.2E-13 T 14-10-2018 IPR006015 Universal stress protein A Amico_0265 cf6767d62ac4d4746c1072f5e3ca6071 152 PRINTS PR01438 Universal stress protein signature 106 118 2.2E-13 T 14-10-2018 IPR006015 Universal stress protein A Amico_0854 f912551b59fab8dce9cd3537ee7c9eeb 245 SUPERFAMILY SSF63862 175 237 6.02E-6 T 14-10-2018 IPR036371 Thiamin pyrophosphokinase, thiamin-binding domain superfamily GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Amico_0854 f912551b59fab8dce9cd3537ee7c9eeb 245 Pfam PF04263 Thiamin pyrophosphokinase, catalytic domain 51 143 2.3E-17 T 14-10-2018 IPR007371 Thiamin pyrophosphokinase, catalytic domain GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Amico_0854 f912551b59fab8dce9cd3537ee7c9eeb 245 SUPERFAMILY SSF63999 15 152 1.44E-25 T 14-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Amico_0854 f912551b59fab8dce9cd3537ee7c9eeb 245 TIGRFAM TIGR01378 thi_PPkinase: thiamine pyrophosphokinase 28 239 3.5E-38 T 14-10-2018 IPR006282 Thiamin pyrophosphokinase GO:0004788|GO:0006772 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Amico_0854 f912551b59fab8dce9cd3537ee7c9eeb 245 Pfam PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain 180 236 6.6E-10 T 14-10-2018 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Amico_0854 f912551b59fab8dce9cd3537ee7c9eeb 245 SMART SM00983 166 238 6.0E-9 T 14-10-2018 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain GO:0009229|GO:0030975 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Amico_0854 f912551b59fab8dce9cd3537ee7c9eeb 245 Gene3D G3DSA:3.40.50.10240 25 242 2.8E-49 T 14-10-2018 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily GO:0004788|GO:0005524|GO:0009229 KEGG: 00730+2.7.6.2|MetaCyc: PWY-6898|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|Reactome: R-HSA-196819 Amico_1340 87515f79d53665de90aebf835972974a 429 PIRSF PIRSF006066 1 429 5.9E-137 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1340 87515f79d53665de90aebf835972974a 429 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 418 1.2E-108 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1340 87515f79d53665de90aebf835972974a 429 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 16 424 1.3E-120 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0454 78b88fe4a73e50cb61456121bebf266b 263 ProSitePatterns PS01227 Uncharacterized protein family UPF0012 signature. 142 162 - T 14-10-2018 IPR001110 Uncharacterised protein family UPF0012, conserved site Amico_0454 78b88fe4a73e50cb61456121bebf266b 263 Gene3D G3DSA:3.60.110.10 1 261 1.1E-83 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Amico_0454 78b88fe4a73e50cb61456121bebf266b 263 SUPERFAMILY SSF56317 1 255 6.67E-73 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Amico_0454 78b88fe4a73e50cb61456121bebf266b 263 Pfam PF00795 Carbon-nitrogen hydrolase 2 246 3.5E-50 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Amico_0746 67295e2d57efd05cfb100f8f0e8a9d00 322 SUPERFAMILY SSF53271 74 313 5.31E-63 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Amico_0746 67295e2d57efd05cfb100f8f0e8a9d00 322 TIGRFAM TIGR01251 ribP_PPkin: ribose-phosphate diphosphokinase 9 322 3.1E-121 T 14-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Amico_0746 67295e2d57efd05cfb100f8f0e8a9d00 322 Gene3D G3DSA:3.40.50.2020 151 298 1.0E-121 T 14-10-2018 Amico_0746 67295e2d57efd05cfb100f8f0e8a9d00 322 Pfam PF13793 N-terminal domain of ribose phosphate pyrophosphokinase 8 124 2.8E-47 T 14-10-2018 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Amico_0746 67295e2d57efd05cfb100f8f0e8a9d00 322 Pfam PF14572 Phosphoribosyl synthetase-associated domain 214 321 8.7E-31 T 14-10-2018 IPR005946 Ribose-phosphate pyrophosphokinase GO:0000287|GO:0004749|GO:0009165 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1 Amico_0746 67295e2d57efd05cfb100f8f0e8a9d00 322 SMART SM01400 8 124 1.9E-76 T 14-10-2018 Amico_0746 67295e2d57efd05cfb100f8f0e8a9d00 322 Gene3D G3DSA:3.40.50.2020 11 310 1.0E-121 T 14-10-2018 Amico_0746 67295e2d57efd05cfb100f8f0e8a9d00 322 Hamap MF_00583_B Putative ribose-phosphate pyrophosphokinase [prs]. 8 322 49.651 T 14-10-2018 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type GO:0004749 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 Amico_0746 67295e2d57efd05cfb100f8f0e8a9d00 322 ProSitePatterns PS00114 Phosphoribosyl pyrophosphate synthase signature. 132 147 - T 14-10-2018 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site GO:0000287|GO:0004749|GO:0009156|GO:0044249 KEGG: 00030+2.7.6.1|KEGG: 00230+2.7.6.1|Reactome: R-HSA-73843 Amico_1327 efd2195cf33eb84a06ba1bee303b5283 424 Pfam PF02687 FtsX-like permease family 313 413 1.9E-9 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Amico_1245 2b4e5cd17747f86925c519fd3bd81350 212 SUPERFAMILY SSF50037 135 202 1.33E-18 T 14-10-2018 IPR008988 Transcriptional repressor, C-terminal Amico_1245 2b4e5cd17747f86925c519fd3bd81350 212 Pfam PF02742 Iron dependent repressor, metal binding and dimerisation domain 46 103 3.0E-13 T 14-10-2018 IPR001367 Iron dependent repressor, metal binding and dimerisation domain GO:0046914|GO:0046983 Amico_1245 2b4e5cd17747f86925c519fd3bd81350 212 SUPERFAMILY SSF47979 46 105 1.01E-13 T 14-10-2018 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily GO:0046914|GO:0046983 Amico_1245 2b4e5cd17747f86925c519fd3bd81350 212 SUPERFAMILY SSF46785 3 56 1.02E-8 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1245 2b4e5cd17747f86925c519fd3bd81350 212 SMART SM00529 7 107 1.6E-26 T 14-10-2018 IPR022689 Iron dependent repressor GO:0003700|GO:0006355|GO:0046914 Amico_1245 2b4e5cd17747f86925c519fd3bd81350 212 Gene3D G3DSA:2.30.30.90 129 211 6.2E-25 T 14-10-2018 IPR038157 Ferrous iron transporter, core domain Amico_1245 2b4e5cd17747f86925c519fd3bd81350 212 Pfam PF04023 FeoA domain 130 202 1.8E-18 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Amico_1245 2b4e5cd17747f86925c519fd3bd81350 212 Gene3D G3DSA:1.10.10.10 1 109 8.7E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1245 2b4e5cd17747f86925c519fd3bd81350 212 SMART SM00899 130 202 3.4E-24 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Amico_0473 ac1949aa9756390716f2d9d8805b630a 268 Pfam PF00106 short chain dehydrogenase 8 200 9.4E-46 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_0473 ac1949aa9756390716f2d9d8805b630a 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 158 177 7.9E-25 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_0473 ac1949aa9756390716f2d9d8805b630a 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 179 196 7.9E-25 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_0473 ac1949aa9756390716f2d9d8805b630a 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 7.9E-25 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_0473 ac1949aa9756390716f2d9d8805b630a 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 132 148 7.9E-25 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_0473 ac1949aa9756390716f2d9d8805b630a 268 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 85 96 7.9E-25 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_0473 ac1949aa9756390716f2d9d8805b630a 268 ProSitePatterns PS00061 Short-chain dehydrogenases/reductases family signature. 145 173 - T 14-10-2018 IPR020904 Short-chain dehydrogenase/reductase, conserved site GO:0016491 Amico_0473 ac1949aa9756390716f2d9d8805b630a 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 85 96 9.9E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_0473 ac1949aa9756390716f2d9d8805b630a 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 138 146 9.9E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_0473 ac1949aa9756390716f2d9d8805b630a 268 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 158 177 9.9E-10 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_0473 ac1949aa9756390716f2d9d8805b630a 268 Gene3D G3DSA:3.40.50.720 3 261 3.9E-58 T 14-10-2018 Amico_0473 ac1949aa9756390716f2d9d8805b630a 268 SUPERFAMILY SSF51735 5 251 1.37E-58 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 SUPERFAMILY SSF52374 6 271 4.83E-100 T 14-10-2018 Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 SUPERFAMILY SSF48163 272 432 1.7E-32 T 14-10-2018 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding GO:0000049 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 PRINTS PR00987 Glutamyl-tRNA synthetase signature 8 20 9.1E-16 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 PRINTS PR00987 Glutamyl-tRNA synthetase signature 22 33 9.1E-16 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 PRINTS PR00987 Glutamyl-tRNA synthetase signature 37 50 9.1E-16 T 14-10-2018 IPR000924 Glutamyl/glutaminyl-tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0005737|GO:0043039 Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 11 22 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 6 107 2.8E-41 T 14-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 Pfam PF00749 tRNA synthetases class I (E and Q), catalytic domain 114 277 2.5E-49 T 14-10-2018 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain GO:0004812|GO:0005524|GO:0043039 Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 TIGRFAM TIGR00464 gltX_bact: glutamate--tRNA ligase 110 432 1.2E-98 T 14-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 Gene3D G3DSA:1.10.10.350 339 434 1.4E-19 T 14-10-2018 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 Gene3D G3DSA:3.40.50.620 109 287 1.2E-70 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 Gene3D G3DSA:3.40.50.620 1 108 5.6E-52 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1261 48f351c439760c0878b17b9a89adcfbb 439 Hamap MF_00022 Glutamate--tRNA ligase [gltX]. 4 435 30.239 T 14-10-2018 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial GO:0000166|GO:0004818|GO:0005524|GO:0005737|GO:0006424 KEGG: 00860+6.1.1.17|KEGG: 00970+6.1.1.17|MetaCyc: PWY-5188|Reactome: R-HSA-379726 Amico_1662 c6bb7e80e09d6c49232d08a045c7664d 404 SUPERFAMILY SSF81891 124 398 4.84E-33 T 14-10-2018 Amico_1662 c6bb7e80e09d6c49232d08a045c7664d 404 Gene3D G3DSA:1.10.3090.10 126 393 1.8E-21 T 14-10-2018 Amico_1662 c6bb7e80e09d6c49232d08a045c7664d 404 Pfam PF01743 Poly A polymerase head domain 20 126 1.7E-19 T 14-10-2018 IPR002646 Poly A polymerase, head domain GO:0003723|GO:0006396|GO:0016779 Reactome: R-HSA-6784531|Reactome: R-HSA-6785470 Amico_1662 c6bb7e80e09d6c49232d08a045c7664d 404 SUPERFAMILY SSF81301 6 122 1.07E-26 T 14-10-2018 Amico_1662 c6bb7e80e09d6c49232d08a045c7664d 404 Gene3D G3DSA:3.30.460.10 2 125 1.8E-29 T 14-10-2018 Amico_0298 1a18beb064d075081f989e28ab15a0e2 143 SUPERFAMILY SSF52161 5 140 1.31E-53 T 14-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 Amico_0298 1a18beb064d075081f989e28ab15a0e2 143 TIGRFAM TIGR01066 rplM_bact: ribosomal protein uL13 8 143 6.0E-58 T 14-10-2018 IPR005823 Ribosomal protein L13, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0298 1a18beb064d075081f989e28ab15a0e2 143 PIRSF PIRSF002181 1 142 3.2E-45 T 14-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Amico_0298 1a18beb064d075081f989e28ab15a0e2 143 Hamap MF_01366 50S ribosomal protein L13 [rplM]. 18 142 25.587 T 14-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Amico_0298 1a18beb064d075081f989e28ab15a0e2 143 Pfam PF00572 Ribosomal protein L13 17 138 3.4E-52 T 14-10-2018 IPR005822 Ribosomal protein L13 GO:0003735|GO:0005840|GO:0006412 Amico_0298 1a18beb064d075081f989e28ab15a0e2 143 Gene3D G3DSA:3.90.1180.10 4 143 9.7E-57 T 14-10-2018 IPR036899 Ribosomal protein L13 superfamily GO:0003735|GO:0005840|GO:0006412 Amico_1401 b3192d37b88105f73bc37c30df5be74a 80 SUPERFAMILY SSF159127 1 74 1.44E-17 T 14-10-2018 IPR037254 HupF/HypC superfamily Amico_1401 b3192d37b88105f73bc37c30df5be74a 80 Gene3D G3DSA:2.40.50.970 1 75 3.8E-18 T 14-10-2018 IPR037254 HupF/HypC superfamily Amico_1401 b3192d37b88105f73bc37c30df5be74a 80 TIGRFAM TIGR00074 hypC_hupF: hydrogenase assembly chaperone HypC/HupF 1 75 5.6E-15 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Amico_1401 b3192d37b88105f73bc37c30df5be74a 80 Pfam PF01455 HupF/HypC family 1 65 5.3E-18 T 14-10-2018 IPR001109 Hydrogenase expression/formation protein, HupF/HypC Amico_0507 e1bf96f9f1a54057b30dc4fd424e8b4d 326 Gene3D G3DSA:3.40.190.10 118 257 1.2E-78 T 14-10-2018 Amico_0507 e1bf96f9f1a54057b30dc4fd424e8b4d 326 Gene3D G3DSA:3.40.190.10 35 323 1.2E-78 T 14-10-2018 Amico_0507 e1bf96f9f1a54057b30dc4fd424e8b4d 326 SUPERFAMILY SSF53850 32 325 3.84E-62 T 14-10-2018 Amico_0507 e1bf96f9f1a54057b30dc4fd424e8b4d 326 Pfam PF16868 NMT1-like family 35 323 4.1E-72 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_0507 e1bf96f9f1a54057b30dc4fd424e8b4d 326 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 9 323 2.3E-75 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_1889 d5af155b0baafe00b45f0bb85c8297bb 565 Gene3D G3DSA:1.10.3720.10 20 276 5.0E-57 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1889 d5af155b0baafe00b45f0bb85c8297bb 565 SUPERFAMILY SSF161098 20 270 7.46E-50 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1889 d5af155b0baafe00b45f0bb85c8297bb 565 SUPERFAMILY SSF161098 305 536 6.93E-29 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1889 d5af155b0baafe00b45f0bb85c8297bb 565 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 83 268 5.3E-15 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_1889 d5af155b0baafe00b45f0bb85c8297bb 565 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 366 540 2.7E-8 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_1889 d5af155b0baafe00b45f0bb85c8297bb 565 Gene3D G3DSA:1.10.3720.10 293 551 9.5E-33 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0392 b36bca1d6319501eae5ae30a0efd180e 409 SUPERFAMILY SSF53218 3 200 5.5E-32 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Amico_0392 b36bca1d6319501eae5ae30a0efd180e 409 Pfam PF00994 Probable molybdopterin binding domain 7 171 2.2E-27 T 14-10-2018 IPR001453 MoaB/Mog domain Amico_0392 b36bca1d6319501eae5ae30a0efd180e 409 Gene3D G3DSA:3.40.980.10 1 173 3.2E-44 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Amico_0392 b36bca1d6319501eae5ae30a0efd180e 409 Hamap MF_00226_B Putative competence-damage inducible protein [cinA]. 1 409 102.714 T 14-10-2018 IPR008135 Competence-induced protein CinA Amico_0392 b36bca1d6319501eae5ae30a0efd180e 409 Gene3D G3DSA:3.90.950.20 238 400 1.0E-54 T 14-10-2018 IPR036653 CinA-like, C-terminal Amico_0392 b36bca1d6319501eae5ae30a0efd180e 409 PIRSF PIRSF006728 1 405 2.1E-102 T 14-10-2018 IPR008135 Competence-induced protein CinA Amico_0392 b36bca1d6319501eae5ae30a0efd180e 409 Pfam PF02464 Competence-damaged protein 248 398 2.8E-54 T 14-10-2018 IPR008136 CinA, C-terminal Amico_0392 b36bca1d6319501eae5ae30a0efd180e 409 TIGRFAM TIGR00199 PncC_domain: amidohydrolase, PncC family 257 398 2.4E-45 T 14-10-2018 IPR008136 CinA, C-terminal Amico_0392 b36bca1d6319501eae5ae30a0efd180e 409 SMART SM00852 5 172 6.3E-24 T 14-10-2018 IPR001453 MoaB/Mog domain Amico_0392 b36bca1d6319501eae5ae30a0efd180e 409 SUPERFAMILY SSF142433 243 399 2.48E-51 T 14-10-2018 IPR036653 CinA-like, C-terminal Amico_0451 50693e7664c7432ed5f3ef10dbcdec8f 1064 Pfam PF04851 Type III restriction enzyme, res subunit 268 473 7.5E-16 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Amico_0451 50693e7664c7432ed5f3ef10dbcdec8f 1064 Pfam PF11867 Domain of unknown function (DUF3387) 729 1057 3.2E-120 T 14-10-2018 IPR021810 Protein of unknown function DUF3387 Amico_0451 50693e7664c7432ed5f3ef10dbcdec8f 1064 SUPERFAMILY SSF52540 423 713 1.01E-8 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0451 50693e7664c7432ed5f3ef10dbcdec8f 1064 Pfam PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) 8 210 2.0E-43 T 14-10-2018 IPR007409 Restriction endonuclease, type I, HsdR, N-terminal GO:0003677|GO:0004519|GO:0006304 Amico_0451 50693e7664c7432ed5f3ef10dbcdec8f 1064 SMART SM00487 262 507 1.1E-12 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Amico_0451 50693e7664c7432ed5f3ef10dbcdec8f 1064 Gene3D G3DSA:3.40.50.300 493 743 3.5E-47 T 14-10-2018 Amico_0451 50693e7664c7432ed5f3ef10dbcdec8f 1064 Gene3D G3DSA:3.40.50.300 266 492 3.7E-47 T 14-10-2018 Amico_0451 50693e7664c7432ed5f3ef10dbcdec8f 1064 TIGRFAM TIGR00348 hsdR: type I site-specific deoxyribonuclease, HsdR family 8 731 1.3E-183 T 14-10-2018 IPR004473 Restriction endonuclease, type I, HsdR GO:0003677|GO:0005524|GO:0009035|GO:0009307 Amico_0451 50693e7664c7432ed5f3ef10dbcdec8f 1064 SUPERFAMILY SSF52540 224 523 4.35E-23 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0451 50693e7664c7432ed5f3ef10dbcdec8f 1064 Gene3D G3DSA:3.90.1570.50 97 260 5.3E-35 T 14-10-2018 Amico_1188 a994826aa8b3a11d78ca2026e243ad79 198 ProSitePatterns PS01127 Elongation factor Ts signature 2. 77 87 - T 14-10-2018 IPR018101 Translation elongation factor Ts, conserved site GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Amico_1188 a994826aa8b3a11d78ca2026e243ad79 198 SUPERFAMILY SSF46934 4 55 6.2E-20 T 14-10-2018 IPR009060 UBA-like superfamily GO:0005515 Amico_1188 a994826aa8b3a11d78ca2026e243ad79 198 SUPERFAMILY SSF54713 57 198 5.23E-49 T 14-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Amico_1188 a994826aa8b3a11d78ca2026e243ad79 198 Gene3D G3DSA:1.10.286.20 112 156 9.0E-54 T 14-10-2018 Amico_1188 a994826aa8b3a11d78ca2026e243ad79 198 TIGRFAM TIGR00116 tsf: translation elongation factor Ts 1 97 4.3E-40 T 14-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Amico_1188 a994826aa8b3a11d78ca2026e243ad79 198 Gene3D G3DSA:3.30.479.20 60 197 9.0E-54 T 14-10-2018 IPR036402 Elongation factor Ts, dimerisation domain superfamily Reactome: R-HSA-5389840 Amico_1188 a994826aa8b3a11d78ca2026e243ad79 198 Gene3D G3DSA:1.10.8.10 1 55 7.0E-28 T 14-10-2018 Amico_1188 a994826aa8b3a11d78ca2026e243ad79 198 Pfam PF00889 Elongation factor TS 27 198 1.2E-36 T 14-10-2018 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation GO:0003746|GO:0006414 Reactome: R-HSA-5389840 Amico_1188 a994826aa8b3a11d78ca2026e243ad79 198 Hamap MF_00050 Elongation factor Ts [tsf]. 1 198 45.507 T 14-10-2018 IPR001816 Translation elongation factor EFTs/EF1B GO:0003746|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Amico_0560 6e14637ef24dbdb0a2c2a595cbf8a6b4 684 SUPERFAMILY SSF52210 287 438 1.57E-25 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Amico_0560 6e14637ef24dbdb0a2c2a595cbf8a6b4 684 Gene3D G3DSA:3.30.1490.20 490 567 1.5E-67 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Amico_0560 6e14637ef24dbdb0a2c2a595cbf8a6b4 684 SUPERFAMILY SSF51735 3 125 7.48E-5 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0560 6e14637ef24dbdb0a2c2a595cbf8a6b4 684 Gene3D G3DSA:3.40.50.261 120 282 6.8E-32 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Amico_0560 6e14637ef24dbdb0a2c2a595cbf8a6b4 684 Gene3D G3DSA:3.30.470.20 472 680 1.5E-67 T 14-10-2018 Amico_0560 6e14637ef24dbdb0a2c2a595cbf8a6b4 684 Gene3D G3DSA:3.40.50.261 286 441 1.3E-32 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Amico_0560 6e14637ef24dbdb0a2c2a595cbf8a6b4 684 Pfam PF13549 ATP-grasp domain 471 681 7.0E-60 T 14-10-2018 Amico_0560 6e14637ef24dbdb0a2c2a595cbf8a6b4 684 SUPERFAMILY SSF52210 120 279 5.36E-25 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Amico_0560 6e14637ef24dbdb0a2c2a595cbf8a6b4 684 Gene3D G3DSA:3.40.50.720 4 118 1.4E-5 T 14-10-2018 Amico_0560 6e14637ef24dbdb0a2c2a595cbf8a6b4 684 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 145 279 1.1E-30 T 14-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Amico_0560 6e14637ef24dbdb0a2c2a595cbf8a6b4 684 SUPERFAMILY SSF56059 473 680 1.25E-35 T 14-10-2018 Amico_0429 95a68290ff02e5a8626bee3af5903688 363 SUPERFAMILY SSF81271 278 363 3.71E-29 T 14-10-2018 IPR012676 TGS-like KEGG: 00970+6.1.1.3 Amico_0429 95a68290ff02e5a8626bee3af5903688 363 Gene3D G3DSA:3.10.20.30 47 361 1.7E-131 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Amico_0429 95a68290ff02e5a8626bee3af5903688 363 Pfam PF06071 Protein of unknown function (DUF933) 278 362 1.1E-33 T 14-10-2018 IPR013029 YchF, C-terminal domain Reactome: R-HSA-114608 Amico_0429 95a68290ff02e5a8626bee3af5903688 363 SUPERFAMILY SSF52540 2 300 1.19E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0429 95a68290ff02e5a8626bee3af5903688 363 Gene3D G3DSA:3.40.50.300 2 277 1.7E-131 T 14-10-2018 Amico_0429 95a68290ff02e5a8626bee3af5903688 363 PIRSF PIRSF006641 1 363 2.7E-112 T 14-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Amico_0429 95a68290ff02e5a8626bee3af5903688 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 69 84 7.3E-18 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0429 95a68290ff02e5a8626bee3af5903688 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 4 24 7.3E-18 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0429 95a68290ff02e5a8626bee3af5903688 363 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 86 104 7.3E-18 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0429 95a68290ff02e5a8626bee3af5903688 363 Pfam PF01926 50S ribosome-binding GTPase 4 114 1.0E-12 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0429 95a68290ff02e5a8626bee3af5903688 363 TIGRFAM TIGR00092 TIGR00092: GTP-binding protein YchF 1 363 5.5E-105 T 14-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Amico_0429 95a68290ff02e5a8626bee3af5903688 363 Hamap MF_00944 Ribosome-binding ATPase YchF [ychF]. 1 363 39.858 T 14-10-2018 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 GO:0005525 Reactome: R-HSA-114608 Amico_0429 95a68290ff02e5a8626bee3af5903688 363 Gene3D G3DSA:1.10.150.300 112 198 1.7E-131 T 14-10-2018 IPR023192 TGS-like domain superfamily Reactome: R-HSA-114608 Amico_0187 0152466572b4e926e6075a4779be98f7 350 Gene3D G3DSA:3.30.1490.20 137 205 1.2E-41 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Amico_0187 0152466572b4e926e6075a4779be98f7 350 Gene3D G3DSA:3.30.470.20 116 338 1.2E-41 T 14-10-2018 Amico_0187 0152466572b4e926e6075a4779be98f7 350 Pfam PF07478 D-ala D-ala ligase C-terminus 152 335 2.8E-21 T 14-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_0187 0152466572b4e926e6075a4779be98f7 350 SUPERFAMILY SSF56059 122 343 1.25E-30 T 14-10-2018 Amico_1467 2423f1e78ce65cc848bc89ddefcdeabb 575 PIRSF PIRSF004803 11 569 4.4E-217 T 14-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 Amico_1467 2423f1e78ce65cc848bc89ddefcdeabb 575 SMART SM00849 32 227 1.6E-25 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_1467 2423f1e78ce65cc848bc89ddefcdeabb 575 Gene3D G3DSA:3.40.50.10710 219 378 6.0E-179 T 14-10-2018 Amico_1467 2423f1e78ce65cc848bc89ddefcdeabb 575 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 375 422 1.6E-10 T 14-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain Amico_1467 2423f1e78ce65cc848bc89ddefcdeabb 575 TIGRFAM TIGR00649 MG423: beta-CASP ribonuclease, RNase J family 20 566 2.2E-173 T 14-10-2018 IPR004613 Ribonuclease J GO:0003723|GO:0046872 Amico_1467 2423f1e78ce65cc848bc89ddefcdeabb 575 ProSitePatterns PS01292 Uncharacterized protein family UPF0036 signature. 377 405 - T 14-10-2018 IPR001587 Ribonuclease J, conserved site Amico_1467 2423f1e78ce65cc848bc89ddefcdeabb 575 Gene3D G3DSA:3.10.20.580 462 569 1.2E-14 T 14-10-2018 Amico_1467 2423f1e78ce65cc848bc89ddefcdeabb 575 Hamap MF_01491 Ribonuclease J [rnj]. 15 569 40.932 T 14-10-2018 IPR030854 Ribonuclease J, bacteria GO:0004521|GO:0004534|GO:0006396|GO:0008270|GO:0090501 Amico_1467 2423f1e78ce65cc848bc89ddefcdeabb 575 SUPERFAMILY SSF56281 20 436 3.67E-94 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_1467 2423f1e78ce65cc848bc89ddefcdeabb 575 Gene3D G3DSA:3.60.15.10 21 449 6.0E-179 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_1467 2423f1e78ce65cc848bc89ddefcdeabb 575 Pfam PF00753 Metallo-beta-lactamase superfamily 30 187 9.6E-15 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0104 a87a1d80561a73fcb9523aef9d693517 241 Gene3D G3DSA:1.10.530.10 117 239 1.5E-20 T 14-10-2018 Amico_0104 a87a1d80561a73fcb9523aef9d693517 241 SUPERFAMILY SSF53955 101 228 5.35E-20 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Amico_0104 a87a1d80561a73fcb9523aef9d693517 241 Pfam PF01464 Transglycosylase SLT domain 123 220 2.9E-13 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 Amico_1603 6b0fbfde85f25824ad944c18d9f3a59d 403 Gene3D G3DSA:3.90.1150.10 14 384 8.0E-138 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1603 6b0fbfde85f25824ad944c18d9f3a59d 403 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 232 245 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Amico_1603 6b0fbfde85f25824ad944c18d9f3a59d 403 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 160 184 1.0E-10 T 14-10-2018 Amico_1603 6b0fbfde85f25824ad944c18d9f3a59d 403 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 112 133 1.0E-10 T 14-10-2018 Amico_1603 6b0fbfde85f25824ad944c18d9f3a59d 403 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 90 110 1.0E-10 T 14-10-2018 Amico_1603 6b0fbfde85f25824ad944c18d9f3a59d 403 PRINTS PR00753 1-aminocyclopropane-1-carboxylate synthase signature 196 219 1.0E-10 T 14-10-2018 Amico_1603 6b0fbfde85f25824ad944c18d9f3a59d 403 Pfam PF00155 Aminotransferase class I and II 56 384 3.1E-53 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_1603 6b0fbfde85f25824ad944c18d9f3a59d 403 SUPERFAMILY SSF53383 1 391 4.29E-100 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1603 6b0fbfde85f25824ad944c18d9f3a59d 403 Gene3D G3DSA:3.40.640.10 44 281 8.0E-138 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0674 9623d6359b9d9456498055ae845dddd1 432 SUPERFAMILY SSF54862 4 62 2.54E-12 T 14-10-2018 Amico_0674 9623d6359b9d9456498055ae845dddd1 432 Pfam PF04060 Putative Fe-S cluster 374 406 3.8E-12 T 14-10-2018 IPR007202 4Fe-4S domain GO:0051536 Amico_0674 9623d6359b9d9456498055ae845dddd1 432 SUPERFAMILY SSF53920 41 335 5.49E-28 T 14-10-2018 IPR009016 Iron hydrogenase Amico_0674 9623d6359b9d9456498055ae845dddd1 432 Gene3D G3DSA:3.20.20.20 364 428 5.3E-10 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Amico_0674 9623d6359b9d9456498055ae845dddd1 432 Pfam PF02906 Iron only hydrogenase large subunit, C-terminal domain 92 299 4.3E-15 T 14-10-2018 IPR004108 Iron hydrogenase, large subunit, C-terminal Amico_0674 9623d6359b9d9456498055ae845dddd1 432 Gene3D G3DSA:3.40.950.20 61 317 1.6E-14 T 14-10-2018 Amico_0674 9623d6359b9d9456498055ae845dddd1 432 Gene3D G3DSA:3.30.70.20 5 60 7.7E-9 T 14-10-2018 Amico_0203 42fea1b18c251199bbd412c3d0d2f97c 393 SUPERFAMILY SSF55031 173 275 1.15E-12 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_0203 42fea1b18c251199bbd412c3d0d2f97c 393 Gene3D G3DSA:3.40.630.10 12 380 8.9E-79 T 14-10-2018 Amico_0203 42fea1b18c251199bbd412c3d0d2f97c 393 Pfam PF07687 Peptidase dimerisation domain 171 276 6.1E-17 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_0203 42fea1b18c251199bbd412c3d0d2f97c 393 Gene3D G3DSA:3.30.70.360 174 308 8.9E-79 T 14-10-2018 Amico_0203 42fea1b18c251199bbd412c3d0d2f97c 393 SUPERFAMILY SSF53187 6 391 1.09E-53 T 14-10-2018 Amico_0203 42fea1b18c251199bbd412c3d0d2f97c 393 Pfam PF01546 Peptidase family M20/M25/M40 67 388 5.7E-28 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_0714 c24313a82646bab9f456d95312f8b346 783 SMART SM00534 326 511 1.6E-67 T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Amico_0714 c24313a82646bab9f456d95312f8b346 783 SUPERFAMILY SSF160443 709 781 2.35E-8 T 14-10-2018 IPR036063 Smr domain superfamily Amico_0714 c24313a82646bab9f456d95312f8b346 783 PIRSF PIRSF005814 1 782 8.3E-210 T 14-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 Amico_0714 c24313a82646bab9f456d95312f8b346 783 SUPERFAMILY SSF52540 290 513 4.5E-38 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0714 c24313a82646bab9f456d95312f8b346 783 Pfam PF01713 Smr domain 709 782 1.6E-18 T 14-10-2018 IPR002625 Smr domain Amico_0714 c24313a82646bab9f456d95312f8b346 783 Pfam PF00488 MutS domain V 330 512 1.6E-33 T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Amico_0714 c24313a82646bab9f456d95312f8b346 783 Gene3D G3DSA:3.40.50.300 295 596 4.6E-73 T 14-10-2018 Amico_0714 c24313a82646bab9f456d95312f8b346 783 SUPERFAMILY SSF48334 84 283 4.05E-15 T 14-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily Amico_0714 c24313a82646bab9f456d95312f8b346 783 Hamap MF_00092 Endonuclease MutS2 [mutS2]. 4 781 18.288 T 14-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 Amico_0714 c24313a82646bab9f456d95312f8b346 783 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 408 424 - T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Amico_0714 c24313a82646bab9f456d95312f8b346 783 SMART SM00533 11 314 0.0013 T 14-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Amico_0714 c24313a82646bab9f456d95312f8b346 783 Gene3D G3DSA:3.30.1370.110 695 783 3.0E-20 T 14-10-2018 Amico_0714 c24313a82646bab9f456d95312f8b346 783 SMART SM00463 704 782 8.9E-14 T 14-10-2018 IPR002625 Smr domain Amico_0714 c24313a82646bab9f456d95312f8b346 783 TIGRFAM TIGR01069 mutS2: MutS2 family protein 4 781 2.2E-171 T 14-10-2018 IPR005747 Endonuclease MutS2 GO:0004519|GO:0016887|GO:0030983|GO:0045910 Amico_0375 3b178a04a7e134c3b18a6cd849017403 434 Gene3D G3DSA:2.40.50.140 6 103 1.8E-24 T 14-10-2018 Amico_0375 3b178a04a7e134c3b18a6cd849017403 434 PRINTS PR01042 Aspartyl-tRNA synthetase signature 349 365 5.3E-12 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0375 3b178a04a7e134c3b18a6cd849017403 434 PRINTS PR01042 Aspartyl-tRNA synthetase signature 185 197 5.3E-12 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0375 3b178a04a7e134c3b18a6cd849017403 434 PRINTS PR01042 Aspartyl-tRNA synthetase signature 201 214 5.3E-12 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0375 3b178a04a7e134c3b18a6cd849017403 434 PRINTS PR01042 Aspartyl-tRNA synthetase signature 389 403 5.3E-12 T 14-10-2018 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0375 3b178a04a7e134c3b18a6cd849017403 434 TIGRFAM TIGR00457 asnS: asparagine--tRNA ligase 10 433 8.4E-145 T 14-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 Amico_0375 3b178a04a7e134c3b18a6cd849017403 434 SUPERFAMILY SSF50249 4 99 3.05E-23 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0375 3b178a04a7e134c3b18a6cd849017403 434 SUPERFAMILY SSF55681 101 433 7.47E-89 T 14-10-2018 Amico_0375 3b178a04a7e134c3b18a6cd849017403 434 Hamap MF_00534 Asparagine--tRNA ligase [asnS]. 4 434 40.443 T 14-10-2018 IPR004522 Asparagine-tRNA ligase GO:0000166|GO:0004816|GO:0005524|GO:0005737|GO:0006421 KEGG: 00970+6.1.1.22 Amico_0375 3b178a04a7e134c3b18a6cd849017403 434 Pfam PF01336 OB-fold nucleic acid binding domain 19 98 2.2E-15 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Amico_0375 3b178a04a7e134c3b18a6cd849017403 434 Gene3D G3DSA:3.30.930.10 105 434 6.7E-108 T 14-10-2018 Amico_0375 3b178a04a7e134c3b18a6cd849017403 434 Pfam PF00152 tRNA synthetases class II (D, K and N) 115 428 3.8E-78 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_1535 eb0ab6eb435be2cfaeec0c144fb3c0d1 340 Pfam PF02423 Ornithine cyclodeaminase/mu-crystallin family 21 330 9.5E-72 T 14-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Amico_1535 eb0ab6eb435be2cfaeec0c144fb3c0d1 340 PIRSF PIRSF001439 1 339 8.9E-79 T 14-10-2018 IPR003462 Ornithine cyclodeaminase/mu-crystallin Reactome: R-HSA-71064 Amico_1535 eb0ab6eb435be2cfaeec0c144fb3c0d1 340 Gene3D G3DSA:3.40.50.720 140 312 7.7E-105 T 14-10-2018 Amico_1535 eb0ab6eb435be2cfaeec0c144fb3c0d1 340 SUPERFAMILY SSF51735 6 339 2.23E-75 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1535 eb0ab6eb435be2cfaeec0c144fb3c0d1 340 Gene3D G3DSA:3.30.1780.10 10 334 7.7E-105 T 14-10-2018 IPR023401 Ornithine cyclodeaminase, N-terminal Reactome: R-HSA-71064 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 Pfam PF14698 Argininosuccinate lyase C-terminal 363 429 5.5E-19 T 14-10-2018 IPR029419 Argininosuccinate lyase, C-terminal KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 Hamap MF_00006 Argininosuccinate lyase [argH]. 1 451 38.292 T 14-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 Gene3D G3DSA:1.10.40.30 358 430 1.1E-167 T 14-10-2018 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 ProSitePatterns PS00163 Fumarate lyases signature. 273 282 - T 14-10-2018 IPR020557 Fumarate lyase, conserved site GO:0003824 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 TIGRFAM TIGR00838 argH: argininosuccinate lyase 1 448 3.7E-160 T 14-10-2018 IPR009049 Argininosuccinate lyase GO:0004056|GO:0042450 KEGG: 00220+4.3.2.1|KEGG: 00250+4.3.2.1|MetaCyc: PWY-4983|MetaCyc: PWY-4984|MetaCyc: PWY-5|MetaCyc: PWY-5154|MetaCyc: PWY-7400|Reactome: R-HSA-70635 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 Pfam PF00206 Lyase 4 298 1.2E-63 T 14-10-2018 IPR022761 Fumarate lyase, N-terminal Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 SUPERFAMILY SSF48557 1 452 1.57E-129 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 Gene3D G3DSA:1.20.200.10 117 446 1.1E-167 T 14-10-2018 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 Gene3D G3DSA:1.10.275.10 24 227 1.1E-167 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 PRINTS PR00145 Argininosuccinate lyase family signature 273 289 4.8E-55 T 14-10-2018 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 PRINTS PR00145 Argininosuccinate lyase family signature 229 253 4.8E-55 T 14-10-2018 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 PRINTS PR00145 Argininosuccinate lyase family signature 308 327 4.8E-55 T 14-10-2018 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 PRINTS PR00145 Argininosuccinate lyase family signature 140 160 4.8E-55 T 14-10-2018 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 PRINTS PR00145 Argininosuccinate lyase family signature 99 121 4.8E-55 T 14-10-2018 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 PRINTS PR00145 Argininosuccinate lyase family signature 191 207 4.8E-55 T 14-10-2018 Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 PRINTS PR00149 Fumarate lyase superfamily signature 273 289 8.6E-25 T 14-10-2018 IPR000362 Fumarate lyase family Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 PRINTS PR00149 Fumarate lyase superfamily signature 100 118 8.6E-25 T 14-10-2018 IPR000362 Fumarate lyase family Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 PRINTS PR00149 Fumarate lyase superfamily signature 229 256 8.6E-25 T 14-10-2018 IPR000362 Fumarate lyase family Amico_1512 0ffb5c9021ede22634e05ac0f7bb84a6 466 PRINTS PR00149 Fumarate lyase superfamily signature 145 163 8.6E-25 T 14-10-2018 IPR000362 Fumarate lyase family Amico_0422 8b1802bdfb6dee141a8a4a94069c20d2 246 SMART SM00345 18 77 8.1E-18 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0422 8b1802bdfb6dee141a8a4a94069c20d2 246 Pfam PF00392 Bacterial regulatory proteins, gntR family 15 77 8.3E-18 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0422 8b1802bdfb6dee141a8a4a94069c20d2 246 SUPERFAMILY SSF46785 9 81 5.06E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0422 8b1802bdfb6dee141a8a4a94069c20d2 246 SMART SM00895 98 220 4.2E-18 T 14-10-2018 IPR011711 GntR, C-terminal Amico_0422 8b1802bdfb6dee141a8a4a94069c20d2 246 Pfam PF07729 FCD domain 98 219 9.7E-22 T 14-10-2018 IPR011711 GntR, C-terminal Amico_0422 8b1802bdfb6dee141a8a4a94069c20d2 246 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 6.9E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0422 8b1802bdfb6dee141a8a4a94069c20d2 246 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 6.9E-8 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0422 8b1802bdfb6dee141a8a4a94069c20d2 246 Gene3D G3DSA:1.20.120.530 87 227 8.9E-26 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_0422 8b1802bdfb6dee141a8a4a94069c20d2 246 Gene3D G3DSA:1.10.10.10 4 86 1.2E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0422 8b1802bdfb6dee141a8a4a94069c20d2 246 SUPERFAMILY SSF48008 95 227 4.97E-25 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_0621 5288a24e284e7ead4ddf3a555f6cf635 116 Gene3D G3DSA:3.30.1330.30 33 104 1.0E-11 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like Amico_0621 5288a24e284e7ead4ddf3a555f6cf635 116 Pfam PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 36 108 6.1E-7 T 14-10-2018 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 Amico_0621 5288a24e284e7ead4ddf3a555f6cf635 116 SUPERFAMILY SSF55315 33 110 1.94E-13 T 14-10-2018 IPR029064 50S ribosomal protein L30e-like Amico_0487 105329987ef4e093a5a8686527fc665c 401 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 44 290 6.9E-23 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Amico_0487 105329987ef4e093a5a8686527fc665c 401 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 31 312 3.5E-45 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Amico_0487 105329987ef4e093a5a8686527fc665c 401 Gene3D G3DSA:2.40.30.170 44 297 9.0E-80 T 14-10-2018 Amico_0487 105329987ef4e093a5a8686527fc665c 401 Gene3D G3DSA:2.40.50.100 55 218 9.0E-80 T 14-10-2018 Amico_0487 105329987ef4e093a5a8686527fc665c 401 SUPERFAMILY SSF111369 44 294 2.09E-26 T 14-10-2018 Amico_0487 105329987ef4e093a5a8686527fc665c 401 Gene3D G3DSA:2.40.420.20 39 378 9.0E-80 T 14-10-2018 Amico_0487 105329987ef4e093a5a8686527fc665c 401 Gene3D G3DSA:1.10.287.470 89 180 9.0E-80 T 14-10-2018 Amico_0556 8cb4cd335d2d6c4722cd5bd1b9e087d8 115 SUPERFAMILY SSF50104 1 114 7.42E-49 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily Amico_0556 8cb4cd335d2d6c4722cd5bd1b9e087d8 115 ProSitePatterns PS01015 Ribosomal protein L19 signature. 85 100 - T 14-10-2018 IPR018257 Ribosomal protein L19, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0556 8cb4cd335d2d6c4722cd5bd1b9e087d8 115 Hamap MF_00402 50S ribosomal protein L19 [rplS]. 1 113 31.734 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0556 8cb4cd335d2d6c4722cd5bd1b9e087d8 115 PIRSF PIRSF002191 1 115 1.9E-51 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0556 8cb4cd335d2d6c4722cd5bd1b9e087d8 115 Pfam PF01245 Ribosomal protein L19 3 112 4.6E-52 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0556 8cb4cd335d2d6c4722cd5bd1b9e087d8 115 TIGRFAM TIGR01024 rplS_bact: ribosomal protein bL19 2 112 5.0E-50 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0556 8cb4cd335d2d6c4722cd5bd1b9e087d8 115 Gene3D G3DSA:2.30.30.790 3 113 5.2E-14 T 14-10-2018 IPR038657 Ribosomal protein L19 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0556 8cb4cd335d2d6c4722cd5bd1b9e087d8 115 PRINTS PR00061 Ribosomal protein L19 signature 33 62 7.6E-42 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0556 8cb4cd335d2d6c4722cd5bd1b9e087d8 115 PRINTS PR00061 Ribosomal protein L19 signature 3 32 7.6E-42 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0556 8cb4cd335d2d6c4722cd5bd1b9e087d8 115 PRINTS PR00061 Ribosomal protein L19 signature 87 112 7.6E-42 T 14-10-2018 IPR001857 Ribosomal protein L19 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1883 97c57b20750d0646b60548cf358dc5b8 249 Pfam PF01614 Bacterial transcriptional regulator 128 247 4.5E-22 T 14-10-2018 IPR014757 Transcription regulator IclR, C-terminal Amico_1883 97c57b20750d0646b60548cf358dc5b8 249 SMART SM00346 7 97 1.9E-10 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_1883 97c57b20750d0646b60548cf358dc5b8 249 SUPERFAMILY SSF55781 81 249 4.25E-37 T 14-10-2018 Amico_1883 97c57b20750d0646b60548cf358dc5b8 249 Pfam PF09339 IclR helix-turn-helix domain 10 60 5.2E-13 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_1883 97c57b20750d0646b60548cf358dc5b8 249 Gene3D G3DSA:3.30.450.40 81 249 2.4E-41 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_1883 97c57b20750d0646b60548cf358dc5b8 249 SUPERFAMILY SSF46785 10 72 3.76E-11 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1883 97c57b20750d0646b60548cf358dc5b8 249 Gene3D G3DSA:1.10.10.10 4 73 7.9E-15 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1787 e6556179f8c40c43467530fcd8f44441 323 Pfam PF01370 NAD dependent epimerase/dehydratase family 6 241 1.2E-26 T 14-10-2018 IPR001509 NAD-dependent epimerase/dehydratase GO:0003824|GO:0050662 Amico_1787 e6556179f8c40c43467530fcd8f44441 323 Gene3D G3DSA:3.40.50.720 2 321 6.8E-104 T 14-10-2018 Amico_1787 e6556179f8c40c43467530fcd8f44441 323 SUPERFAMILY SSF51735 3 315 4.44E-55 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0003 2f267fc13355ea1a37d995f3834c417c 339 Pfam PF02463 RecF/RecN/SMC N terminal domain 6 321 1.6E-19 T 14-10-2018 IPR003395 RecF/RecN/SMC, N-terminal Amico_0003 2f267fc13355ea1a37d995f3834c417c 339 Gene3D G3DSA:3.40.50.300 5 317 1.2E-60 T 14-10-2018 Amico_0003 2f267fc13355ea1a37d995f3834c417c 339 TIGRFAM TIGR00611 recf: DNA replication and repair protein RecF 5 318 2.3E-53 T 14-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 Amico_0003 2f267fc13355ea1a37d995f3834c417c 339 Hamap MF_00365 DNA replication and repair protein RecF [recF]. 1 339 50.911 T 14-10-2018 IPR001238 DNA-binding, RecF GO:0003697|GO:0005524|GO:0006281 Amico_0003 2f267fc13355ea1a37d995f3834c417c 339 SUPERFAMILY SSF52540 6 317 2.25E-27 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0003 2f267fc13355ea1a37d995f3834c417c 339 Gene3D G3DSA:1.20.1050.90 105 282 1.2E-60 T 14-10-2018 Amico_0003 2f267fc13355ea1a37d995f3834c417c 339 ProSitePatterns PS00617 RecF protein signature 1. 102 122 - T 14-10-2018 IPR018078 DNA-binding, RecF, conserved site GO:0003697|GO:0005524|GO:0006281 Amico_1474 609599812db4faf65b7638a33339fccf 533 Hamap MF_01227 CTP synthase [pyrG]. 2 531 51.247 T 14-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Amico_1474 609599812db4faf65b7638a33339fccf 533 Pfam PF00117 Glutamine amidotransferase class-I 302 525 3.3E-55 T 14-10-2018 IPR017926 Glutamine amidotransferase Amico_1474 609599812db4faf65b7638a33339fccf 533 Pfam PF06418 CTP synthase N-terminus 3 264 1.8E-126 T 14-10-2018 IPR017456 CTP synthase, N-terminal GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Amico_1474 609599812db4faf65b7638a33339fccf 533 SUPERFAMILY SSF52540 2 265 9.25E-121 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1474 609599812db4faf65b7638a33339fccf 533 SUPERFAMILY SSF52317 289 531 2.53E-77 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Amico_1474 609599812db4faf65b7638a33339fccf 533 Gene3D G3DSA:3.40.50.880 285 533 6.9E-107 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Amico_1474 609599812db4faf65b7638a33339fccf 533 TIGRFAM TIGR00337 PyrG: CTP synthase 1 526 1.4E-249 T 14-10-2018 IPR004468 CTP synthase GO:0003883|GO:0006221 KEGG: 00240+6.3.4.2|MetaCyc: PWY-7176|MetaCyc: PWY-7177|MetaCyc: PWY-7185|Reactome: R-HSA-499943 Amico_1474 609599812db4faf65b7638a33339fccf 533 Gene3D G3DSA:3.40.50.300 1 284 7.9E-131 T 14-10-2018 Amico_0019 b5fc830d551f0f81b32fc5173b449cc2 96 Pfam PF17253 Family of unknown function (DUF5320) 1 92 2.9E-23 T 14-10-2018 IPR035205 Protein of unknown function DUF5320 Amico_1131 fd1f5f54e8b53715741284a93c24f863 310 Pfam PF01695 IstB-like ATP binding protein 108 279 5.5E-20 T 14-10-2018 IPR002611 IstB-like ATP-binding protein GO:0005524 Amico_1131 fd1f5f54e8b53715741284a93c24f863 310 SUPERFAMILY SSF52540 140 282 3.88E-18 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1131 fd1f5f54e8b53715741284a93c24f863 310 Gene3D G3DSA:3.40.50.300 105 286 1.1E-42 T 14-10-2018 Amico_1131 fd1f5f54e8b53715741284a93c24f863 310 SMART SM00382 152 285 3.2E-4 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0175 c76abe7cbe4c68e47a06802a6716dc1d 226 PIRSF PIRSF006171 2 226 6.8E-74 T 14-10-2018 IPR024187 Signal transduction response regulator, citrate/malate metabolism GO:0000160|GO:0003700 Amico_0175 c76abe7cbe4c68e47a06802a6716dc1d 226 SUPERFAMILY SSF52172 2 135 1.22E-34 T 14-10-2018 IPR011006 CheY-like superfamily Amico_0175 c76abe7cbe4c68e47a06802a6716dc1d 226 Pfam PF00072 Response regulator receiver domain 6 117 4.0E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_0175 c76abe7cbe4c68e47a06802a6716dc1d 226 SMART SM00448 4 117 4.8E-31 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_0175 c76abe7cbe4c68e47a06802a6716dc1d 226 Gene3D G3DSA:3.40.50.2300 1 139 4.4E-33 T 14-10-2018 Amico_0942 49546615da83e926b58289f3592191cc 385 SUPERFAMILY SSF56300 156 382 1.3E-36 T 14-10-2018 Amico_0942 49546615da83e926b58289f3592191cc 385 Gene3D G3DSA:3.60.21.10 154 338 3.6E-19 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Amico_0942 49546615da83e926b58289f3592191cc 385 Pfam PF00149 Calcineurin-like phosphoesterase 156 320 1.7E-13 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 Gene3D G3DSA:1.10.240.10 227 332 2.9E-39 T 14-10-2018 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 SMART SM00363 360 422 0.0069 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 Gene3D G3DSA:3.40.50.620 2 226 1.6E-86 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 Pfam PF00579 tRNA synthetases class I (W and Y) 30 327 2.5E-78 T 14-10-2018 IPR002305 Aminoacyl-tRNA synthetase, class Ic GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 220 232 9.0E-26 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 45 67 9.0E-26 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 187 209 9.0E-26 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 PRINTS PR01040 Tyrosyl-tRNA synthetase signature 166 181 9.0E-26 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 41 51 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 Hamap MF_02006 Tyrosine--tRNA ligase [tyrS]. 2 425 43.043 T 14-10-2018 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 GO:0004831 KEGG: 00970+6.1.1.1 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 TIGRFAM TIGR00234 tyrS: tyrosine--tRNA ligase 1 426 1.3E-123 T 14-10-2018 IPR002307 Tyrosine-tRNA ligase GO:0000166|GO:0004831|GO:0005524|GO:0005737|GO:0006437 KEGG: 00970+6.1.1.1 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 SUPERFAMILY SSF52374 2 327 3.25E-101 T 14-10-2018 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 Gene3D G3DSA:3.10.290.10 333 427 1.2E-23 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 Pfam PF01479 S4 domain 361 397 3.3E-8 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0412 77f0e9aa58efd82bbb1bd5227c8c214e 427 SUPERFAMILY SSF55174 326 425 7.07E-18 T 14-10-2018 Amico_1538 2006b61c8c9651d3cd9393d57ecd6944 207 Pfam PF04961 Formiminotransferase-cyclodeaminase 7 186 6.5E-69 T 14-10-2018 IPR007044 Cyclodeaminase/cyclohydrolase GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 Amico_1538 2006b61c8c9651d3cd9393d57ecd6944 207 Gene3D G3DSA:1.20.120.680 6 207 1.2E-71 T 14-10-2018 IPR036178 Formimidoyltransferase-cyclodeaminase-like superfamily GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 Amico_1538 2006b61c8c9651d3cd9393d57ecd6944 207 SUPERFAMILY SSF101262 1 206 2.75E-61 T 14-10-2018 IPR036178 Formimidoyltransferase-cyclodeaminase-like superfamily GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 Amico_0807 684160ddb73ddd316f08e11573652fe4 598 SMART SM00382 230 418 0.0012 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0807 684160ddb73ddd316f08e11573652fe4 598 Gene3D G3DSA:3.40.50.300 77 441 1.3E-178 T 14-10-2018 Amico_0807 684160ddb73ddd316f08e11573652fe4 598 SUPERFAMILY SSF50615 8 76 2.2E-11 T 14-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0807 684160ddb73ddd316f08e11573652fe4 598 Pfam PF16886 ATPsynthase alpha/beta subunit N-term extension 89 209 5.1E-45 T 14-10-2018 IPR031686 ATPsynthase alpha/beta subunit, N-terminal extension KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0807 684160ddb73ddd316f08e11573652fe4 598 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 12 73 4.3E-13 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0807 684160ddb73ddd316f08e11573652fe4 598 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 218 441 1.1E-95 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0807 684160ddb73ddd316f08e11573652fe4 598 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 432 441 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0807 684160ddb73ddd316f08e11573652fe4 598 Gene3D G3DSA:1.10.1140.10 442 597 3.4E-50 T 14-10-2018 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0807 684160ddb73ddd316f08e11573652fe4 598 Hamap MF_00309 V-type ATP synthase alpha chain [atpA]. 6 592 51.433 T 14-10-2018 IPR022878 V-type ATP synthase catalytic alpha chain GO:0046034 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980|Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0807 684160ddb73ddd316f08e11573652fe4 598 Gene3D G3DSA:2.40.30.20 6 76 4.3E-29 T 14-10-2018 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0807 684160ddb73ddd316f08e11573652fe4 598 SUPERFAMILY SSF47917 455 558 6.54E-21 T 14-10-2018 Amico_0807 684160ddb73ddd316f08e11573652fe4 598 Gene3D G3DSA:2.40.50.100 121 191 1.3E-178 T 14-10-2018 Amico_0807 684160ddb73ddd316f08e11573652fe4 598 SUPERFAMILY SSF52540 174 446 1.47E-84 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1257 8a0a218082da53cea0609a9af8760472 129 SUPERFAMILY SSF55811 6 127 1.76E-33 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Amico_1257 8a0a218082da53cea0609a9af8760472 129 Pfam PF00293 NUDIX domain 7 122 2.1E-20 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Amico_1257 8a0a218082da53cea0609a9af8760472 129 PRINTS PR00502 NUDIX hydrolase family signature 47 62 2.1E-6 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Amico_1257 8a0a218082da53cea0609a9af8760472 129 PRINTS PR00502 NUDIX hydrolase family signature 33 47 2.1E-6 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Amico_1257 8a0a218082da53cea0609a9af8760472 129 Gene3D G3DSA:3.90.79.10 3 128 6.6E-38 T 14-10-2018 Amico_1257 8a0a218082da53cea0609a9af8760472 129 ProSitePatterns PS00893 Nudix box signature. 38 59 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Amico_0540 a08aae22b9ce8e2739593b89ad5d59b4 230 SMART SM00849 8 193 1.3E-10 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0540 a08aae22b9ce8e2739593b89ad5d59b4 230 SUPERFAMILY SSF56281 1 205 1.31E-32 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_0540 a08aae22b9ce8e2739593b89ad5d59b4 230 Gene3D G3DSA:3.60.15.10 2 228 1.6E-75 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_0540 a08aae22b9ce8e2739593b89ad5d59b4 230 Hamap MF_00457 UPF0173 metal-dependent hydrolase . 2 228 35.822 T 14-10-2018 IPR022877 Protein of unknown funcion UPF0173 Amico_0540 a08aae22b9ce8e2739593b89ad5d59b4 230 Pfam PF13483 Beta-lactamase superfamily domain 3 193 4.5E-27 T 14-10-2018 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 SMART SM00863 165 214 6.8E-26 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 SUPERFAMILY SSF55186 61 235 1.57E-64 T 14-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 Gene3D G3DSA:3.30.54.20 127 182 1.0E-64 T 14-10-2018 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 Gene3D G3DSA:3.30.980.10 66 217 1.0E-64 T 14-10-2018 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 Hamap MF_00184 Threonine--tRNA ligase [thrS]. 63 629 35.294 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 PRINTS PR01047 Threonyl-tRNA synthetase signature 357 380 4.8E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 PRINTS PR01047 Threonyl-tRNA synthetase signature 459 487 4.8E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 PRINTS PR01047 Threonyl-tRNA synthetase signature 502 515 4.8E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 PRINTS PR01047 Threonyl-tRNA synthetase signature 529 541 4.8E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 PRINTS PR01047 Threonyl-tRNA synthetase signature 324 352 4.8E-54 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 Gene3D G3DSA:3.30.930.10 218 526 3.1E-128 T 14-10-2018 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 SUPERFAMILY SSF55681 238 521 1.9E-97 T 14-10-2018 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 TIGRFAM TIGR00418 thrS: threonine--tRNA ligase 69 625 1.2E-225 T 14-10-2018 IPR002320 Threonine-tRNA ligase, class IIa GO:0004829|GO:0005524|GO:0005737|GO:0006435 KEGG: 00970+6.1.1.3 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 Pfam PF03129 Anticodon binding domain 536 625 4.1E-21 T 14-10-2018 IPR004154 Anticodon-binding Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 Gene3D G3DSA:3.40.50.800 527 632 1.2E-32 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 Pfam PF07973 Threonyl and Alanyl tRNA synthetase second additional domain 165 214 2.5E-15 T 14-10-2018 IPR012947 Threonyl/alanyl tRNA synthetase, SAD GO:0004812|GO:0005524|GO:0043039 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 SUPERFAMILY SSF52954 525 628 7.4E-31 T 14-10-2018 Amico_0703 9fb94789b404f4e411118ae1265e6ed9 633 Pfam PF00587 tRNA synthetase class II core domain (G, H, P, S and T) 320 523 8.4E-39 T 14-10-2018 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_1898 a958a814a8235342b2d8dffee38d7443 425 Gene3D G3DSA:3.30.565.10 274 413 8.6E-24 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1898 a958a814a8235342b2d8dffee38d7443 425 SMART SM00387 314 410 2.8E-4 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_1898 a958a814a8235342b2d8dffee38d7443 425 SUPERFAMILY SSF55874 315 409 7.07E-17 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1898 a958a814a8235342b2d8dffee38d7443 425 Pfam PF10114 Sensory domain found in PocR 10 171 3.4E-41 T 14-10-2018 IPR018771 PocR domain Amico_1898 a958a814a8235342b2d8dffee38d7443 425 Pfam PF07730 Histidine kinase 212 275 1.4E-5 T 14-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Amico_1898 a958a814a8235342b2d8dffee38d7443 425 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 317 409 3.1E-7 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_1442 af148f48a757aebd718364ec5ccf583f 203 PRINTS PR00773 GrpE protein signature 171 190 8.7E-21 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Amico_1442 af148f48a757aebd718364ec5ccf583f 203 PRINTS PR00773 GrpE protein signature 90 105 8.7E-21 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Amico_1442 af148f48a757aebd718364ec5ccf583f 203 PRINTS PR00773 GrpE protein signature 62 78 8.7E-21 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Amico_1442 af148f48a757aebd718364ec5ccf583f 203 PRINTS PR00773 GrpE protein signature 143 158 8.7E-21 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Amico_1442 af148f48a757aebd718364ec5ccf583f 203 Pfam PF01025 GrpE 39 192 1.4E-40 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Amico_1442 af148f48a757aebd718364ec5ccf583f 203 SUPERFAMILY SSF51064 137 192 1.83E-11 T 14-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Amico_1442 af148f48a757aebd718364ec5ccf583f 203 Gene3D G3DSA:3.90.20.20 9 134 4.8E-23 T 14-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 Amico_1442 af148f48a757aebd718364ec5ccf583f 203 SUPERFAMILY SSF58014 41 135 6.02E-20 T 14-10-2018 IPR013805 GrpE nucleotide exchange factor, coiled-coil Reactome: R-HSA-1268020 Amico_1442 af148f48a757aebd718364ec5ccf583f 203 ProSitePatterns PS01071 grpE protein signature. 146 190 - T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Amico_1442 af148f48a757aebd718364ec5ccf583f 203 Hamap MF_01151 Protein GrpE [grpE]. 11 192 17.847 T 14-10-2018 IPR000740 GrpE nucleotide exchange factor GO:0000774|GO:0006457|GO:0042803|GO:0051087 Reactome: R-HSA-1268020 Amico_1442 af148f48a757aebd718364ec5ccf583f 203 Gene3D G3DSA:2.30.22.10 135 200 2.4E-18 T 14-10-2018 IPR009012 GrpE nucleotide exchange factor, head GO:0006457 Reactome: R-HSA-1268020 Amico_0779 9fa3a0540fd873b1c182b3de423a1f22 639 Pfam PF06480 FtsH Extracellular 9 96 7.5E-10 T 14-10-2018 IPR011546 Peptidase M41, FtsH extracellular GO:0004222|GO:0005524|GO:0008270|GO:0016021 Reactome: R-HSA-8949664 Amico_0779 9fa3a0540fd873b1c182b3de423a1f22 639 SUPERFAMILY SSF52540 148 395 2.98E-72 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0779 9fa3a0540fd873b1c182b3de423a1f22 639 TIGRFAM TIGR01241 FtsH_fam: ATP-dependent metallopeptidase HflB 104 596 1.0E-236 T 14-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Amico_0779 9fa3a0540fd873b1c182b3de423a1f22 639 Gene3D G3DSA:1.20.58.760 406 614 8.5E-81 T 14-10-2018 Amico_0779 9fa3a0540fd873b1c182b3de423a1f22 639 SUPERFAMILY SSF140990 407 596 2.75E-75 T 14-10-2018 IPR037219 Peptidase M41-like GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Amico_0779 9fa3a0540fd873b1c182b3de423a1f22 639 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 192 324 5.1E-43 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_0779 9fa3a0540fd873b1c182b3de423a1f22 639 Gene3D G3DSA:3.40.50.300 140 326 4.4E-69 T 14-10-2018 Amico_0779 9fa3a0540fd873b1c182b3de423a1f22 639 Gene3D G3DSA:1.10.8.60 327 403 4.4E-31 T 14-10-2018 Amico_0779 9fa3a0540fd873b1c182b3de423a1f22 639 SMART SM00382 188 327 3.5E-26 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0779 9fa3a0540fd873b1c182b3de423a1f22 639 Hamap MF_01458 ATP-dependent zinc metalloprotease FtsH [ftsH]. 3 610 38.121 T 14-10-2018 IPR005936 Peptidase, FtsH GO:0004222|GO:0016020 Reactome: R-HSA-8949664 Amico_0779 9fa3a0540fd873b1c182b3de423a1f22 639 ProSitePatterns PS00674 AAA-protein family signature. 295 313 - T 14-10-2018 IPR003960 ATPase, AAA-type, conserved site GO:0005524 Amico_0779 9fa3a0540fd873b1c182b3de423a1f22 639 Pfam PF01434 Peptidase family M41 385 595 2.9E-85 T 14-10-2018 IPR000642 Peptidase M41 GO:0004222|GO:0005524|GO:0006508 Reactome: R-HSA-8949664 Amico_1642 408db65748870cafe8a42b4a5af1b778 363 Gene3D G3DSA:3.40.50.720 13 336 3.2E-102 T 14-10-2018 Amico_1642 408db65748870cafe8a42b4a5af1b778 363 SUPERFAMILY SSF51735 6 188 1.66E-18 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1642 408db65748870cafe8a42b4a5af1b778 363 PIRSF PIRSF036497 6 352 1.7E-73 T 14-10-2018 IPR022697 Homoserine dehydrogenase lacking ACT domain GO:0004412 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Amico_1642 408db65748870cafe8a42b4a5af1b778 363 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 212 234 - T 14-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Amico_1642 408db65748870cafe8a42b4a5af1b778 363 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 15 159 1.8E-6 T 14-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Amico_1642 408db65748870cafe8a42b4a5af1b778 363 SUPERFAMILY SSF55347 167 325 5.69E-32 T 14-10-2018 Amico_1642 408db65748870cafe8a42b4a5af1b778 363 Gene3D G3DSA:3.30.360.10 167 328 3.2E-102 T 14-10-2018 Amico_1642 408db65748870cafe8a42b4a5af1b778 363 Pfam PF00742 Homoserine dehydrogenase 167 344 9.4E-46 T 14-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Amico_1768 2c19abb4bdb1f0e719c42ee7153222d3 305 PIRSF PIRSF001365 1 302 1.8E-57 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_1768 2c19abb4bdb1f0e719c42ee7153222d3 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 2.0E-10 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_1768 2c19abb4bdb1f0e719c42ee7153222d3 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 2.0E-10 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_1768 2c19abb4bdb1f0e719c42ee7153222d3 305 PRINTS PR00146 Dihydrodipicolinate synthase signature 130 147 2.0E-10 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_1768 2c19abb4bdb1f0e719c42ee7153222d3 305 SUPERFAMILY SSF51569 1 296 1.15E-65 T 14-10-2018 Amico_1768 2c19abb4bdb1f0e719c42ee7153222d3 305 Gene3D G3DSA:3.20.20.70 4 298 1.9E-64 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_1768 2c19abb4bdb1f0e719c42ee7153222d3 305 Pfam PF00701 Dihydrodipicolinate synthetase family 4 290 2.1E-46 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_1768 2c19abb4bdb1f0e719c42ee7153222d3 305 SMART SM01130 3 296 6.9E-55 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_0191 3e9858228c5323b142a72f8c3eac92b7 132 SUPERFAMILY SSF47240 15 101 1.62E-20 T 14-10-2018 IPR009078 Ferritin-like superfamily Amico_0191 3e9858228c5323b142a72f8c3eac92b7 132 TIGRFAM TIGR04537 encap_target: encapsulation C-terminal sorting signal 122 132 0.0072 T 14-10-2018 Amico_0191 3e9858228c5323b142a72f8c3eac92b7 132 TIGRFAM TIGR04535 ferrit_encaps: ferritin-like protein 17 131 1.6E-42 T 14-10-2018 IPR030907 Ferritin-like protein Amico_1378 65dfc82c04aa929a291df664a677afff 255 SUPERFAMILY SSF53067 124 253 8.42E-36 T 14-10-2018 Amico_1378 65dfc82c04aa929a291df664a677afff 255 Pfam PF03309 Type III pantothenate kinase 2 205 1.0E-58 T 14-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Amico_1378 65dfc82c04aa929a291df664a677afff 255 Hamap MF_01274 Type III pantothenate kinase [coaX]. 1 254 31.865 T 14-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Amico_1378 65dfc82c04aa929a291df664a677afff 255 Gene3D G3DSA:3.30.420.40 90 255 1.2E-55 T 14-10-2018 Amico_1378 65dfc82c04aa929a291df664a677afff 255 SUPERFAMILY SSF53067 1 122 6.35E-26 T 14-10-2018 Amico_1378 65dfc82c04aa929a291df664a677afff 255 Gene3D G3DSA:3.30.420.40 1 86 7.4E-24 T 14-10-2018 Amico_1378 65dfc82c04aa929a291df664a677afff 255 TIGRFAM TIGR00671 baf: pantothenate kinase, type III 2 250 3.9E-60 T 14-10-2018 IPR004619 Type III pantothenate kinase GO:0004594 KEGG: 00770+2.7.1.33|MetaCyc: PWY-3961 Amico_0611 9603252c0472524d84b879334bf1bf68 499 Pfam PF10150 Ribonuclease E/G family 107 377 5.2E-102 T 14-10-2018 IPR019307 RNA-binding protein AU-1/Ribonuclease E/G GO:0003723 Amico_0611 9603252c0472524d84b879334bf1bf68 499 SMART SM00316 39 105 4.4E-5 T 14-10-2018 IPR022967 RNA-binding domain, S1 Amico_0611 9603252c0472524d84b879334bf1bf68 499 Gene3D G3DSA:2.40.50.140 33 111 1.6E-19 T 14-10-2018 Amico_0611 9603252c0472524d84b879334bf1bf68 499 SUPERFAMILY SSF50249 41 111 2.43E-11 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0611 9603252c0472524d84b879334bf1bf68 499 TIGRFAM TIGR00757 RNaseEG: ribonuclease, Rne/Rng family 15 411 6.3E-134 T 14-10-2018 IPR004659 Ribonuclease E/G GO:0003723|GO:0004540|GO:0006396 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 Gene3D G3DSA:2.40.30.10 211 340 6.4E-56 T 14-10-2018 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 Pfam PF03144 Elongation factor Tu domain 2 230 299 4.8E-18 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 TIGRFAM TIGR00485 EF-Tu: translation elongation factor Tu 1 399 1.3E-219 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 14 145 5.0E-14 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 Hamap MF_00118_B Elongation factor Tu [tuf]. 1 400 59.885 T 14-10-2018 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 ProSitePatterns PS00301 Translational (tr)-type guanine nucleotide-binding (G) domain signature. 51 66 - T 14-10-2018 IPR031157 Tr-type G domain, conserved site Amico_0625 53f5c9b0427848780ab1f4439d307175 400 SUPERFAMILY SSF52540 9 231 1.64E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0625 53f5c9b0427848780ab1f4439d307175 400 Pfam PF03143 Elongation factor Tu C-terminal domain 304 398 3.9E-33 T 14-10-2018 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal Amico_0625 53f5c9b0427848780ab1f4439d307175 400 Gene3D G3DSA:2.40.30.10 344 399 1.2E-26 T 14-10-2018 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 SUPERFAMILY SSF50465 304 399 2.82E-35 T 14-10-2018 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal Amico_0625 53f5c9b0427848780ab1f4439d307175 400 SUPERFAMILY SSF50447 210 307 3.34E-32 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Amico_0625 53f5c9b0427848780ab1f4439d307175 400 Pfam PF00009 Elongation factor Tu GTP binding domain 10 206 1.6E-58 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 PRINTS PR00315 GTP-binding elongation factor signature 94 105 9.8E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 PRINTS PR00315 GTP-binding elongation factor signature 131 140 9.8E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 PRINTS PR00315 GTP-binding elongation factor signature 14 27 9.8E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 PRINTS PR00315 GTP-binding elongation factor signature 78 88 9.8E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 PRINTS PR00315 GTP-binding elongation factor signature 58 66 9.8E-25 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_0625 53f5c9b0427848780ab1f4439d307175 400 Gene3D G3DSA:3.40.50.300 1 208 8.4E-69 T 14-10-2018 Amico_1754 72320a42220c7f544a7fb8fa72bacdff 544 SUPERFAMILY SSF51338 3 537 3.12E-14 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1754 72320a42220c7f544a7fb8fa72bacdff 544 SUPERFAMILY SSF51556 64 490 9.83E-27 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_1754 72320a42220c7f544a7fb8fa72bacdff 544 Pfam PF07969 Amidohydrolase family 57 531 2.1E-80 T 14-10-2018 IPR013108 Amidohydrolase 3 Amico_1754 72320a42220c7f544a7fb8fa72bacdff 544 Gene3D G3DSA:3.20.20.140 65 490 1.7E-119 T 14-10-2018 Amico_1754 72320a42220c7f544a7fb8fa72bacdff 544 Gene3D G3DSA:2.30.40.10 8 508 1.7E-119 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1754 72320a42220c7f544a7fb8fa72bacdff 544 Gene3D G3DSA:3.10.310.70 83 203 1.7E-119 T 14-10-2018 Amico_0523 0af009c27926663ad307982b70ee0500 132 SUPERFAMILY SSF55298 3 128 3.77E-36 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Amico_0523 0af009c27926663ad307982b70ee0500 132 TIGRFAM TIGR00004 TIGR00004: reactive intermediate/imine deaminase 7 126 2.0E-32 T 14-10-2018 IPR006056 RidA family Reactome: R-HSA-8849175 Amico_0523 0af009c27926663ad307982b70ee0500 132 Pfam PF01042 Endoribonuclease L-PSP 10 126 8.2E-31 T 14-10-2018 IPR006175 YjgF/YER057c/UK114 family Reactome: R-HSA-8849175 Amico_0523 0af009c27926663ad307982b70ee0500 132 Gene3D G3DSA:3.30.1330.40 2 127 1.7E-37 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Amico_0358 4b0355d7285baa28b6a17eb9da0eec1d 536 SMART SM00382 302 504 0.69 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0358 4b0355d7285baa28b6a17eb9da0eec1d 536 SMART SM00382 32 236 2.9E-7 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0358 4b0355d7285baa28b6a17eb9da0eec1d 536 SUPERFAMILY SSF52540 5 246 1.16E-48 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0358 4b0355d7285baa28b6a17eb9da0eec1d 536 SUPERFAMILY SSF52540 274 509 2.45E-37 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0358 4b0355d7285baa28b6a17eb9da0eec1d 536 ProSitePatterns PS00211 ABC transporters family signature. 428 442 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0358 4b0355d7285baa28b6a17eb9da0eec1d 536 Pfam PF00005 ABC transporter 23 189 9.0E-24 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0358 4b0355d7285baa28b6a17eb9da0eec1d 536 Pfam PF00005 ABC transporter 294 455 9.1E-15 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0358 4b0355d7285baa28b6a17eb9da0eec1d 536 Gene3D G3DSA:3.40.50.300 275 514 1.3E-39 T 14-10-2018 Amico_0358 4b0355d7285baa28b6a17eb9da0eec1d 536 Gene3D G3DSA:3.40.50.300 3 257 1.4E-51 T 14-10-2018 Amico_0035 f4a632b329a2bdf1dfb51b338c65847f 101 ProDom PD020942 TRANSPOSASE C TN554 TRANSPOSON TRANSPOSITION FOR DNA-BINDING TRANSPOSABLE DNA ELEMENT 19 98 3.0E-4 T 14-10-2018 Amico_0389 9418c9cc52a0dd252a38be47aa672fbf 294 Pfam PF13413 Helix-turn-helix domain 17 66 2.5E-14 T 14-10-2018 Amico_0389 9418c9cc52a0dd252a38be47aa672fbf 294 SUPERFAMILY SSF47413 10 50 5.35E-6 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Amico_0389 9418c9cc52a0dd252a38be47aa672fbf 294 Gene3D G3DSA:1.10.260.40 2 97 1.5E-19 T 14-10-2018 Amico_0389 9418c9cc52a0dd252a38be47aa672fbf 294 Pfam PF13464 Domain of unknown function (DUF4115) 213 282 5.5E-14 T 14-10-2018 IPR025194 Domain of unknown function DUF4115 Amico_0377 2c7e70fb11a45e0ac4fa6bbc5916171b 347 SUPERFAMILY SSF53613 14 317 2.28E-57 T 14-10-2018 IPR029056 Ribokinase-like Amico_0377 2c7e70fb11a45e0ac4fa6bbc5916171b 347 ProSitePatterns PS00584 pfkB family of carbohydrate kinases signature 2. 266 279 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Amico_0377 2c7e70fb11a45e0ac4fa6bbc5916171b 347 ProSitePatterns PS00583 pfkB family of carbohydrate kinases signature 1. 53 77 - T 14-10-2018 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site GO:0016773 Amico_0377 2c7e70fb11a45e0ac4fa6bbc5916171b 347 Gene3D G3DSA:3.40.1190.20 5 318 2.3E-103 T 14-10-2018 IPR029056 Ribokinase-like Amico_0377 2c7e70fb11a45e0ac4fa6bbc5916171b 347 Pfam PF00294 pfkB family carbohydrate kinase 15 310 6.5E-44 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB Amico_0608 eee306b26c15a5492fed77860449bc31 370 TIGRFAM TIGR02210 rodA_shape: rod shape-determining protein RodA 16 363 3.4E-109 T 14-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0608 eee306b26c15a5492fed77860449bc31 370 Pfam PF01098 Cell cycle protein 19 362 8.9E-92 T 14-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0608 eee306b26c15a5492fed77860449bc31 370 Hamap MF_02079 Peptidoglycan glycosyltransferase MrdB [mrdB]. 10 368 24.816 T 14-10-2018 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB GO:0008360|GO:0016021 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0005 e224d67cfb09ac358291669f12b02795 157 Pfam PF05258 Protein of unknown function (DUF721) 12 94 1.3E-12 T 14-10-2018 IPR007922 Protein of unknown function DUF721/UPF0232 Amico_1597 db1344357765557e17f21b1f02551ff8 240 SMART SM00934 8 227 4.0E-58 T 14-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_1597 db1344357765557e17f21b1f02551ff8 240 TIGRFAM TIGR01740 pyrF: orotidine 5'-phosphate decarboxylase 9 227 4.7E-46 T 14-10-2018 IPR014732 Orotidine 5'-phosphate decarboxylase GO:0004590|GO:0044205 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_1597 db1344357765557e17f21b1f02551ff8 240 SUPERFAMILY SSF51366 7 229 1.57E-55 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Amico_1597 db1344357765557e17f21b1f02551ff8 240 ProSitePatterns PS00156 Orotidine 5'-phosphate decarboxylase active site. 60 73 - T 14-10-2018 IPR018089 Orotidine 5'-phosphate decarboxylase, active site GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_1597 db1344357765557e17f21b1f02551ff8 240 Gene3D G3DSA:3.20.20.70 1 232 7.0E-66 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_1597 db1344357765557e17f21b1f02551ff8 240 Pfam PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family 8 226 8.0E-36 T 14-10-2018 IPR001754 Orotidine 5'-phosphate decarboxylase domain GO:0004590|GO:0006207 KEGG: 00240+4.1.1.23|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_0654 c721c121ff19f42ab711a1f7d17e5a55 130 Pfam PF00411 Ribosomal protein S11 20 129 1.1E-47 T 14-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Amico_0654 c721c121ff19f42ab711a1f7d17e5a55 130 Gene3D G3DSA:3.30.420.80 2 130 1.7E-54 T 14-10-2018 IPR036967 Ribosomal protein S11 superfamily GO:0003735|GO:0005840|GO:0006412 Amico_0654 c721c121ff19f42ab711a1f7d17e5a55 130 TIGRFAM TIGR03632 uS11_bact: ribosomal protein uS11 11 127 3.9E-58 T 14-10-2018 IPR019981 Ribosomal protein S11, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0654 c721c121ff19f42ab711a1f7d17e5a55 130 Hamap MF_01310 30S ribosomal protein S11 [rpsK]. 3 130 33.401 T 14-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Amico_0654 c721c121ff19f42ab711a1f7d17e5a55 130 SUPERFAMILY SSF53137 15 130 7.85E-49 T 14-10-2018 Amico_0654 c721c121ff19f42ab711a1f7d17e5a55 130 PIRSF PIRSF002131 1 130 1.4E-53 T 14-10-2018 IPR001971 Ribosomal protein S11 GO:0003735|GO:0005840|GO:0006412 Amico_0654 c721c121ff19f42ab711a1f7d17e5a55 130 ProSitePatterns PS00054 Ribosomal protein S11 signature. 98 120 - T 14-10-2018 IPR018102 Ribosomal S11, conserved site Amico_1904 723cd10415bfdd6918044541e2488e44 219 SUPERFAMILY SSF101262 4 199 5.62E-41 T 14-10-2018 IPR036178 Formimidoyltransferase-cyclodeaminase-like superfamily GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 Amico_1904 723cd10415bfdd6918044541e2488e44 219 Gene3D G3DSA:1.20.120.680 1 210 1.7E-46 T 14-10-2018 IPR036178 Formimidoyltransferase-cyclodeaminase-like superfamily GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 Amico_1904 723cd10415bfdd6918044541e2488e44 219 Pfam PF04961 Formiminotransferase-cyclodeaminase 9 187 4.8E-47 T 14-10-2018 IPR007044 Cyclodeaminase/cyclohydrolase GO:0003824|GO:0044237 KEGG: 00340+2.1.2.5|KEGG: 00670+4.3.1.4+2.1.2.5|MetaCyc: PWY-5030|MetaCyc: PWY-5497|Reactome: R-HSA-70921 Amico_0643 5aa922b585b9d9449762ceb357a16256 122 Hamap MF_01337_B 50S ribosomal protein L18 [rplR]. 5 122 27.982 T 14-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0643 5aa922b585b9d9449762ceb357a16256 122 TIGRFAM TIGR00060 L18_bact: ribosomal protein uL18 6 122 7.5E-41 T 14-10-2018 IPR004389 Ribosomal protein L18, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0643 5aa922b585b9d9449762ceb357a16256 122 SUPERFAMILY SSF53137 6 120 8.94E-51 T 14-10-2018 Amico_0643 5aa922b585b9d9449762ceb357a16256 122 Pfam PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast 5 122 5.1E-46 T 14-10-2018 IPR005484 Ribosomal protein L18 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0643 5aa922b585b9d9449762ceb357a16256 122 Gene3D G3DSA:3.30.420.100 4 122 2.4E-43 T 14-10-2018 Amico_0639 40ae103cbb20a4bae6e54a0e68eb3cc7 181 PIRSF PIRSF002161 1 181 7.6E-66 T 14-10-2018 IPR002132 Ribosomal protein L5 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0639 40ae103cbb20a4bae6e54a0e68eb3cc7 181 Gene3D G3DSA:3.30.1440.10 2 180 1.2E-77 T 14-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0639 40ae103cbb20a4bae6e54a0e68eb3cc7 181 Pfam PF00673 ribosomal L5P family C-terminus 85 178 9.4E-40 T 14-10-2018 IPR031309 Ribosomal protein L5, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0639 40ae103cbb20a4bae6e54a0e68eb3cc7 181 Hamap MF_01333_B 50S ribosomal protein L5 [rplE]. 2 180 43.091 T 14-10-2018 IPR020930 Ribosomal protein L5, bacterial-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0639 40ae103cbb20a4bae6e54a0e68eb3cc7 181 SUPERFAMILY SSF55282 4 178 1.2E-73 T 14-10-2018 IPR022803 Ribosomal protein L5 domain superfamily Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0639 40ae103cbb20a4bae6e54a0e68eb3cc7 181 Pfam PF00281 Ribosomal protein L5 25 81 5.0E-25 T 14-10-2018 IPR031310 Ribosomal protein L5, N-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0442 6ddfcb9e57fe0ee4332b61fe97251e20 298 SUPERFAMILY SSF48179 170 274 7.57E-19 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Amico_0442 6ddfcb9e57fe0ee4332b61fe97251e20 298 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 49 128 9.9E-7 T 14-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Amico_0442 6ddfcb9e57fe0ee4332b61fe97251e20 298 SUPERFAMILY SSF51735 5 165 2.74E-21 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0442 6ddfcb9e57fe0ee4332b61fe97251e20 298 Pfam PF09130 Domain of unknown function (DUF1932) 197 266 3.1E-11 T 14-10-2018 IPR015814 Phosphogluconate dehydrogenase, NAD-binding, putative, C-terminal Amico_0442 6ddfcb9e57fe0ee4332b61fe97251e20 298 Gene3D G3DSA:3.40.50.720 6 176 5.2E-28 T 14-10-2018 Amico_0442 6ddfcb9e57fe0ee4332b61fe97251e20 298 Gene3D G3DSA:1.10.1040.10 178 288 3.6E-27 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Amico_0984 c97cb6f20d629887bc143d3cb2342842 213 Pfam PF01813 ATP synthase subunit D 9 199 1.3E-30 T 14-10-2018 IPR002699 ATPase, V1 complex, subunit D GO:0042626 Reactome: R-HSA-1222556|Reactome: R-HSA-6798695|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0188 b47398347ad1ebc4834b26b24333d2c9 367 SUPERFAMILY SSF52440 45 129 4.03E-6 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Amico_0188 b47398347ad1ebc4834b26b24333d2c9 367 Gene3D G3DSA:3.30.470.20 118 349 3.0E-52 T 14-10-2018 Amico_0188 b47398347ad1ebc4834b26b24333d2c9 367 Pfam PF07478 D-ala D-ala ligase C-terminus 159 343 5.2E-26 T 14-10-2018 IPR011095 D-alanine--D-alanine ligase, C-terminal GO:0008716 KEGG: 00473+6.3.2.4|KEGG: 00550+6.3.2.4|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_0188 b47398347ad1ebc4834b26b24333d2c9 367 Gene3D G3DSA:3.30.1490.20 144 215 3.0E-52 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Amico_0188 b47398347ad1ebc4834b26b24333d2c9 367 SUPERFAMILY SSF56059 129 347 4.98E-34 T 14-10-2018 Amico_1817 e1cfbd07502a4868952e5bd06bdb6ecb 150 Pfam PF12802 MarR family 38 88 2.3E-9 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Amico_1817 e1cfbd07502a4868952e5bd06bdb6ecb 150 SUPERFAMILY SSF46785 5 137 3.19E-30 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1817 e1cfbd07502a4868952e5bd06bdb6ecb 150 ProSitePatterns PS01117 MarR-type HTH domain signature. 64 97 - T 14-10-2018 IPR023187 Transcriptional regulator MarR-type, conserved site Amico_1817 e1cfbd07502a4868952e5bd06bdb6ecb 150 SMART SM00347 24 124 1.5E-16 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Amico_1817 e1cfbd07502a4868952e5bd06bdb6ecb 150 Gene3D G3DSA:1.10.10.10 4 139 7.6E-31 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1817 e1cfbd07502a4868952e5bd06bdb6ecb 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 48 64 1.4E-13 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Amico_1817 e1cfbd07502a4868952e5bd06bdb6ecb 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 84 100 1.4E-13 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Amico_1817 e1cfbd07502a4868952e5bd06bdb6ecb 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 65 80 1.4E-13 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Amico_1817 e1cfbd07502a4868952e5bd06bdb6ecb 150 PRINTS PR00598 Bacterial regulatory protein MarR family signature 114 134 1.4E-13 T 14-10-2018 IPR000835 MarR-type HTH domain GO:0003700|GO:0006355 Amico_1725 b87e9dbd1230258e27a1d2d0ad11309f 257 Gene3D G3DSA:3.40.50.720 1 257 8.8E-68 T 14-10-2018 Amico_1725 b87e9dbd1230258e27a1d2d0ad11309f 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 87 98 4.1E-26 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1725 b87e9dbd1230258e27a1d2d0ad11309f 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 14 31 4.1E-26 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1725 b87e9dbd1230258e27a1d2d0ad11309f 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 161 180 4.1E-26 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1725 b87e9dbd1230258e27a1d2d0ad11309f 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 219 239 4.1E-26 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1725 b87e9dbd1230258e27a1d2d0ad11309f 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 182 199 4.1E-26 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1725 b87e9dbd1230258e27a1d2d0ad11309f 257 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 135 151 4.1E-26 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1725 b87e9dbd1230258e27a1d2d0ad11309f 257 SUPERFAMILY SSF51735 11 256 1.84E-66 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1725 b87e9dbd1230258e27a1d2d0ad11309f 257 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 19 256 3.7E-55 T 14-10-2018 Amico_1667 5ed5c9f5fa4a5fd23edda3e56e7a75e6 337 Gene3D G3DSA:3.30.70.260 247 336 2.0E-19 T 14-10-2018 Amico_1667 5ed5c9f5fa4a5fd23edda3e56e7a75e6 337 Pfam PF09383 NIL domain 266 333 1.5E-16 T 14-10-2018 IPR018449 NIL domain Amico_1667 5ed5c9f5fa4a5fd23edda3e56e7a75e6 337 SMART SM00382 30 214 1.9E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1667 5ed5c9f5fa4a5fd23edda3e56e7a75e6 337 Gene3D G3DSA:3.40.50.300 1 244 7.1E-77 T 14-10-2018 Amico_1667 5ed5c9f5fa4a5fd23edda3e56e7a75e6 337 SMART SM00930 259 334 2.5E-17 T 14-10-2018 IPR018449 NIL domain Amico_1667 5ed5c9f5fa4a5fd23edda3e56e7a75e6 337 SUPERFAMILY SSF55021 252 335 3.32E-17 T 14-10-2018 Amico_1667 5ed5c9f5fa4a5fd23edda3e56e7a75e6 337 Pfam PF00005 ABC transporter 21 169 4.1E-36 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1667 5ed5c9f5fa4a5fd23edda3e56e7a75e6 337 ProSitePatterns PS00211 ABC transporters family signature. 141 155 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1667 5ed5c9f5fa4a5fd23edda3e56e7a75e6 337 SUPERFAMILY SSF52540 1 240 1.65E-83 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 271 382 8.8E-27 T 14-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 Gene3D G3DSA:3.30.310.50 383 458 1.4E-18 T 14-10-2018 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 406 453 1.2E-10 T 14-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 14 142 2.1E-43 T 14-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 171 267 6.9E-8 T 14-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 247 262 1.3E-9 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 105 119 1.3E-9 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 SUPERFAMILY SSF53738 271 378 8.63E-27 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 Gene3D G3DSA:3.40.120.10 270 352 1.3E-46 T 14-10-2018 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 Gene3D G3DSA:3.40.120.10 13 167 1.6E-48 T 14-10-2018 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 SUPERFAMILY SSF55957 372 454 3.27E-15 T 14-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 SUPERFAMILY SSF53738 12 178 5.1E-44 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 106 115 - T 14-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 TIGRFAM TIGR01455 glmM: phosphoglucosamine mutase 15 454 2.2E-138 T 14-10-2018 IPR006352 Phosphoglucosamine mutase, bacterial type GO:0000287|GO:0005975|GO:0008966 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 Gene3D G3DSA:3.40.120.10 189 375 1.3E-46 T 14-10-2018 Amico_0739 dcdbcc03cd3ea99352a38077999fc06f 458 SUPERFAMILY SSF53738 171 269 1.29E-14 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0646 06bb6cd284e8e57112ad2c434e29a456 148 ProSitePatterns PS00475 Ribosomal protein L15 signature. 112 142 - T 14-10-2018 IPR001196 Ribosomal protein L15, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0646 06bb6cd284e8e57112ad2c434e29a456 148 Pfam PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A 28 146 1.0E-36 T 14-10-2018 IPR021131 Ribosomal protein L18e/L15P Amico_0646 06bb6cd284e8e57112ad2c434e29a456 148 Gene3D G3DSA:3.100.10.10 70 148 2.3E-20 T 14-10-2018 Amico_0646 06bb6cd284e8e57112ad2c434e29a456 148 SUPERFAMILY SSF52080 4 147 5.36E-44 T 14-10-2018 IPR036227 Ribosomal L18e/L15P superfamily Amico_0646 06bb6cd284e8e57112ad2c434e29a456 148 Hamap MF_01341 50S ribosomal protein L15 [rplO]. 3 148 21.048 T 14-10-2018 IPR030878 Ribosomal protein L15 GO:0003735|GO:0006412|GO:0015934 Amico_0646 06bb6cd284e8e57112ad2c434e29a456 148 TIGRFAM TIGR01071 rplO_bact: ribosomal protein uL15 2 145 9.9E-50 T 14-10-2018 IPR005749 Ribosomal protein L15, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0013 08bdbee4badd380855bf823595c8c156 232 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 170 198 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Amico_0013 08bdbee4badd380855bf823595c8c156 232 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 117 152 3.1E-8 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_0013 08bdbee4badd380855bf823595c8c156 232 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 161 196 6.7E-9 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_0013 08bdbee4badd380855bf823595c8c156 232 TIGRFAM TIGR03532 DapD_Ac: 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase 4 232 7.4E-102 T 14-10-2018 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 Amico_0013 08bdbee4badd380855bf823595c8c156 232 Gene3D G3DSA:3.30.70.250 1 80 1.2E-20 T 14-10-2018 Amico_0013 08bdbee4badd380855bf823595c8c156 232 SUPERFAMILY SSF51161 86 220 5.77E-47 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Amico_0013 08bdbee4badd380855bf823595c8c156 232 Gene3D G3DSA:2.160.10.10 81 232 1.1E-46 T 14-10-2018 Amico_0013 08bdbee4badd380855bf823595c8c156 232 Hamap MF_01691 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase [dapH]. 1 231 41.397 T 14-10-2018 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH GO:0009089|GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 Amico_0013 08bdbee4badd380855bf823595c8c156 232 Pfam PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal 1 83 2.0E-26 T 14-10-2018 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal GO:0047200 KEGG: 00300+2.3.1.89|MetaCyc: PWY-2941 Amico_0399 5b8140f711b72b937e3687c538e90193 121 TIGRFAM TIGR00320 dfx_rbo: desulfoferrodoxin 1 119 5.4E-57 T 14-10-2018 IPR004793 Desulfoferrodoxin GO:0005506|GO:0019430 Amico_0399 5b8140f711b72b937e3687c538e90193 121 SUPERFAMILY SSF49367 34 119 4.71E-28 T 14-10-2018 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily GO:0005506|GO:0016491|GO:0055114 Amico_0399 5b8140f711b72b937e3687c538e90193 121 Pfam PF06397 Desulfoferrodoxin, N-terminal domain 2 37 3.4E-21 T 14-10-2018 IPR004462 Desulforodoxin domain GO:0005506 Amico_0399 5b8140f711b72b937e3687c538e90193 121 Gene3D G3DSA:2.60.40.730 40 120 7.6E-28 T 14-10-2018 IPR036073 Desulfoferrodoxin, ferrous iron-binding domain superfamily GO:0005506|GO:0016491|GO:0055114 Amico_0399 5b8140f711b72b937e3687c538e90193 121 Gene3D G3DSA:2.20.28.100 1 39 5.3E-20 T 14-10-2018 IPR038094 Desulforodoxin domain superfamily Amico_0399 5b8140f711b72b937e3687c538e90193 121 Pfam PF01880 Desulfoferrodoxin 42 119 4.2E-18 T 14-10-2018 IPR002742 Desulfoferrodoxin, ferrous iron-binding domain GO:0005506|GO:0016491|GO:0055114 Amico_0399 5b8140f711b72b937e3687c538e90193 121 SUPERFAMILY SSF57802 3 37 1.49E-12 T 14-10-2018 Amico_0399 5b8140f711b72b937e3687c538e90193 121 TIGRFAM TIGR00319 desulf_FeS4: desulfoferrodoxin FeS4 iron-binding domain 1 34 8.8E-21 T 14-10-2018 IPR004462 Desulforodoxin domain GO:0005506 Amico_0399 5b8140f711b72b937e3687c538e90193 121 TIGRFAM TIGR00332 neela_ferrous: desulfoferrodoxin ferrous iron-binding domain 40 120 8.6E-23 T 14-10-2018 IPR002742 Desulfoferrodoxin, ferrous iron-binding domain GO:0005506|GO:0016491|GO:0055114 Amico_0094 48599725c935263978efcb8ccbffbdbd 189 Gene3D G3DSA:3.40.109.10 1 182 1.0E-47 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Amico_0094 48599725c935263978efcb8ccbffbdbd 189 Pfam PF00881 Nitroreductase family 8 168 2.3E-32 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Amico_0094 48599725c935263978efcb8ccbffbdbd 189 SUPERFAMILY SSF55469 4 186 1.57E-41 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Amico_0214 a69612cecb28312437065c05cb0bb6f6 579 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 9 161 1.6E-15 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_0214 a69612cecb28312437065c05cb0bb6f6 579 Pfam PF07670 Nucleoside recognition 297 392 3.4E-10 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Amico_0214 a69612cecb28312437065c05cb0bb6f6 579 Pfam PF07670 Nucleoside recognition 456 552 1.7E-13 T 14-10-2018 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain Reactome: R-HSA-83936 Amico_0214 a69612cecb28312437065c05cb0bb6f6 579 Pfam PF07664 Ferrous iron transport protein B C terminus 399 449 2.0E-10 T 14-10-2018 IPR011640 Ferrous iron transport protein B, C-terminal GO:0015093|GO:0015684|GO:0016021 Amico_0214 a69612cecb28312437065c05cb0bb6f6 579 Pfam PF02421 Ferrous iron transport protein B 10 163 2.7E-49 T 14-10-2018 IPR030389 FeoB-type guanine nucleotide-binding (G) domain GO:0005525 Amico_0214 a69612cecb28312437065c05cb0bb6f6 579 Gene3D G3DSA:3.40.50.300 7 195 8.9E-43 T 14-10-2018 Amico_0214 a69612cecb28312437065c05cb0bb6f6 579 SUPERFAMILY SSF52540 12 174 1.2E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 ProSitePatterns PS00756 Protein secY signature 2. 162 179 - T 14-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 Pfam PF00344 SecY translocase 71 403 1.4E-113 T 14-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 PIRSF PIRSF004557 1 426 1.5E-120 T 14-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 SUPERFAMILY SSF103491 2 410 9.55E-120 T 14-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 ProSitePatterns PS00755 Protein secY signature 1. 70 89 - T 14-10-2018 IPR030659 SecY conserved site Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 Gene3D G3DSA:1.10.3370.10 1 415 4.5E-166 T 14-10-2018 IPR023201 SecY domain superfamily Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 18 36 2.4E-96 T 14-10-2018 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 300 322 2.4E-96 T 14-10-2018 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 169 192 2.4E-96 T 14-10-2018 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 110 133 2.4E-96 T 14-10-2018 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 388 406 2.4E-96 T 14-10-2018 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 69 89 2.4E-96 T 14-10-2018 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 143 168 2.4E-96 T 14-10-2018 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 355 373 2.4E-96 T 14-10-2018 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 PRINTS PR00303 Preprotein translocase SecY subunit signature 261 280 2.4E-96 T 14-10-2018 Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 Hamap MF_01465 Protein translocase subunit SecY [secY]. 5 419 30.021 T 14-10-2018 IPR026593 Protein translocase subunit SecY Amico_0647 abc740ca0e8d42c827a02e99963f7579 432 TIGRFAM TIGR00967 3a0501s007: preprotein translocase, SecY subunit 15 414 3.3E-122 T 14-10-2018 IPR002208 SecY/SEC61-alpha family GO:0015031|GO:0016020 Reactome: R-HSA-1236974|Reactome: R-HSA-1799339|Reactome: R-HSA-381038 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 Hamap MF_02120 Diaminopimelate decarboxylase [lysA]. 11 424 37.026 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 TIGRFAM TIGR01048 lysA: diaminopimelate decarboxylase 5 423 1.8E-128 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 290 381 3.4E-15 T 14-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 33 289 2.2E-57 T 14-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 55 73 - T 14-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 PRINTS PR01181 Diaminopimelate decarboxylase signature 308 326 4.7E-26 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 PRINTS PR01181 Diaminopimelate decarboxylase signature 73 90 4.7E-26 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 PRINTS PR01181 Diaminopimelate decarboxylase signature 162 171 4.7E-26 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 PRINTS PR01181 Diaminopimelate decarboxylase signature 391 413 4.7E-26 T 14-10-2018 IPR002986 Diaminopimelate decarboxylase, LysA GO:0008836|GO:0009089 KEGG: 00300+4.1.1.20|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 SUPERFAMILY SSF51419 22 291 6.98E-70 T 14-10-2018 IPR029066 PLP-binding barrel Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 381 394 3.3E-21 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 75 87 3.3E-21 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 190 203 3.3E-21 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 55 73 3.3E-21 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 279 298 3.3E-21 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 SUPERFAMILY SSF50621 264 427 5.44E-50 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 Gene3D G3DSA:2.40.37.10 10 420 8.5E-144 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Amico_0228 82e4ae89987ad27dc652b25cd7a25fb2 430 Gene3D G3DSA:3.20.20.10 30 289 8.5E-144 T 14-10-2018 IPR029066 PLP-binding barrel Amico_1632 79c9979422fd035fa65e54fffad04799 230 Gene3D G3DSA:3.40.630.10 45 230 2.7E-14 T 14-10-2018 Amico_1632 79c9979422fd035fa65e54fffad04799 230 SUPERFAMILY SSF53187 70 218 1.17E-10 T 14-10-2018 Amico_1396 55af495fcbef1655a2e974120a010ded 43 Pfam PF04723 Glycine reductase complex selenoprotein A 4 43 6.3E-17 T 14-10-2018 IPR006812 Glycine reductase complex selenoprotein A GO:0030699|GO:0030700|GO:0050485|GO:0055114 Amico_1480 99a1cd583d8ee2889e0ee19778aa0a6e 293 Gene3D G3DSA:3.90.1640.20 8 280 6.1E-75 T 14-10-2018 Amico_1480 99a1cd583d8ee2889e0ee19778aa0a6e 293 Pfam PF14336 Domain of unknown function (DUF4392) 9 273 9.4E-80 T 14-10-2018 IPR025504 Domain of unknown function DUF4392 KEGG: 00471+4.2.1.48 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 SMART SM01005 243 371 2.4E-59 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 Pfam PF01168 Alanine racemase, N-terminal domain 10 230 1.0E-71 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 SUPERFAMILY SSF51419 10 243 2.99E-69 T 14-10-2018 IPR029066 PLP-binding barrel Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 Gene3D G3DSA:2.40.37.10 8 370 1.1E-131 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 ProSitePatterns PS00395 Alanine racemase pyridoxal-phosphate attachment site. 34 44 - T 14-10-2018 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 Pfam PF00842 Alanine racemase, C-terminal domain 245 370 3.7E-42 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 TIGRFAM TIGR00492 alr: alanine racemase 5 371 2.4E-115 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 PRINTS PR00992 Alanine racemase signature 353 366 1.1E-63 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 PRINTS PR00992 Alanine racemase signature 203 230 1.1E-63 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 PRINTS PR00992 Alanine racemase signature 29 45 1.1E-63 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 PRINTS PR00992 Alanine racemase signature 297 314 1.1E-63 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 PRINTS PR00992 Alanine racemase signature 126 138 1.1E-63 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 PRINTS PR00992 Alanine racemase signature 259 274 1.1E-63 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 PRINTS PR00992 Alanine racemase signature 160 171 1.1E-63 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 PRINTS PR00992 Alanine racemase signature 65 83 1.1E-63 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 PRINTS PR00992 Alanine racemase signature 276 291 1.1E-63 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 Gene3D G3DSA:3.20.20.10 12 226 1.1E-131 T 14-10-2018 IPR029066 PLP-binding barrel Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 Hamap MF_01201 Alanine racemase. 3 371 34.527 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_1389 161a151ee1b74c94d3af3ac9f2791cea 372 SUPERFAMILY SSF50621 237 371 8.02E-46 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Amico_1224 50945d0f33dac84570ae2baa5ebb099b 417 Gene3D G3DSA:1.10.3930.10 67 152 3.4E-109 T 14-10-2018 Amico_1224 50945d0f33dac84570ae2baa5ebb099b 417 Gene3D G3DSA:3.75.10.10 4 412 3.4E-109 T 14-10-2018 Amico_1224 50945d0f33dac84570ae2baa5ebb099b 417 Pfam PF02274 Amidinotransferase 17 414 2.8E-55 T 14-10-2018 Amico_1224 50945d0f33dac84570ae2baa5ebb099b 417 PRINTS PR01466 Bacterial arginine deiminase signature 152 170 4.2E-33 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Amico_1224 50945d0f33dac84570ae2baa5ebb099b 417 PRINTS PR01466 Bacterial arginine deiminase signature 396 414 4.2E-33 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Amico_1224 50945d0f33dac84570ae2baa5ebb099b 417 PRINTS PR01466 Bacterial arginine deiminase signature 180 195 4.2E-33 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Amico_1224 50945d0f33dac84570ae2baa5ebb099b 417 PRINTS PR01466 Bacterial arginine deiminase signature 373 387 4.2E-33 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Amico_1224 50945d0f33dac84570ae2baa5ebb099b 417 PRINTS PR01466 Bacterial arginine deiminase signature 353 370 4.2E-33 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Amico_1224 50945d0f33dac84570ae2baa5ebb099b 417 PRINTS PR01466 Bacterial arginine deiminase signature 1 21 4.2E-33 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Amico_1224 50945d0f33dac84570ae2baa5ebb099b 417 SUPERFAMILY SSF55909 2 417 9.0E-84 T 14-10-2018 Amico_1224 50945d0f33dac84570ae2baa5ebb099b 417 PIRSF PIRSF006356 1 417 5.8E-96 T 14-10-2018 IPR003876 Arginine deiminase GO:0006527|GO:0016990 KEGG: 00220+3.5.3.6|MetaCyc: PWY-4981 Amico_0269 1d4b039cecbded93e8609349a800f65d 134 Pfam PF00364 Biotin-requiring enzyme 67 133 8.5E-22 T 14-10-2018 IPR000089 Biotin/lipoyl attachment Amico_0269 1d4b039cecbded93e8609349a800f65d 134 SUPERFAMILY SSF51230 58 133 1.05E-23 T 14-10-2018 IPR011053 Single hybrid motif Amico_0269 1d4b039cecbded93e8609349a800f65d 134 Gene3D G3DSA:2.40.50.100 60 134 6.7E-27 T 14-10-2018 Amico_0269 1d4b039cecbded93e8609349a800f65d 134 ProSitePatterns PS00188 Biotin-requiring enzymes attachment site. 90 107 - T 14-10-2018 IPR001882 Biotin-binding site Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Amico_0198 d8f361ea24dc980ba87f033591733bdb 489 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 103 332 1.1E-11 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Amico_0198 d8f361ea24dc980ba87f033591733bdb 489 Gene3D G3DSA:3.40.50.1100 208 392 2.0E-24 T 14-10-2018 Amico_0198 d8f361ea24dc980ba87f033591733bdb 489 Gene3D G3DSA:3.40.50.1100 102 207 1.5E-9 T 14-10-2018 Amico_0198 d8f361ea24dc980ba87f033591733bdb 489 SUPERFAMILY SSF53686 74 393 8.64E-42 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Amico_0626 598a4e0d10c6adbe946230bc0e018cd1 101 SMART SM01403 6 100 2.4E-59 T 14-10-2018 IPR027486 Ribosomal protein S10 domain Amico_0626 598a4e0d10c6adbe946230bc0e018cd1 101 Hamap MF_00508 30S ribosomal protein S10 [rpsJ]. 2 101 27.59 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0626 598a4e0d10c6adbe946230bc0e018cd1 101 TIGRFAM TIGR01049 rpsJ_bact: ribosomal protein uS10 3 100 7.5E-46 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0626 598a4e0d10c6adbe946230bc0e018cd1 101 Pfam PF00338 Ribosomal protein S10p/S20e 6 100 2.8E-37 T 14-10-2018 IPR027486 Ribosomal protein S10 domain Amico_0626 598a4e0d10c6adbe946230bc0e018cd1 101 ProSitePatterns PS00361 Ribosomal protein S10 signature. 28 43 - T 14-10-2018 IPR018268 Ribosomal protein S10, conserved site GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0626 598a4e0d10c6adbe946230bc0e018cd1 101 SUPERFAMILY SSF54999 4 101 2.35E-39 T 14-10-2018 IPR036838 Ribosomal protein S10 domain superfamily Amico_0626 598a4e0d10c6adbe946230bc0e018cd1 101 Gene3D G3DSA:3.30.70.600 2 101 6.1E-39 T 14-10-2018 IPR036838 Ribosomal protein S10 domain superfamily Amico_0626 598a4e0d10c6adbe946230bc0e018cd1 101 PRINTS PR00971 Ribosomal protein S10 family signature 39 54 8.0E-21 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0626 598a4e0d10c6adbe946230bc0e018cd1 101 PRINTS PR00971 Ribosomal protein S10 family signature 4 17 8.0E-21 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0626 598a4e0d10c6adbe946230bc0e018cd1 101 PRINTS PR00971 Ribosomal protein S10 family signature 60 74 8.0E-21 T 14-10-2018 IPR001848 Ribosomal protein S10 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0726 7e9ac9f6e2482d20bcbd9f6dbef02f73 286 Gene3D G3DSA:3.40.50.150 92 285 9.9E-48 T 14-10-2018 Amico_0726 7e9ac9f6e2482d20bcbd9f6dbef02f73 286 TIGRFAM TIGR00536 hemK_fam: methyltransferase, HemK family 7 257 2.5E-53 T 14-10-2018 IPR004556 Modification methylase HemK GO:0006479|GO:0008276 Amico_0726 7e9ac9f6e2482d20bcbd9f6dbef02f73 286 Pfam PF05175 Methyltransferase small domain 113 196 5.7E-9 T 14-10-2018 IPR007848 Methyltransferase small domain GO:0008168 Amico_0726 7e9ac9f6e2482d20bcbd9f6dbef02f73 286 TIGRFAM TIGR03534 RF_mod_PrmC: protein-(glutamine-N5) methyltransferase, release factor-specific 31 281 1.1E-67 T 14-10-2018 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific GO:0008168 Amico_0726 7e9ac9f6e2482d20bcbd9f6dbef02f73 286 Gene3D G3DSA:1.10.8.10 4 91 5.9E-16 T 14-10-2018 Amico_0726 7e9ac9f6e2482d20bcbd9f6dbef02f73 286 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 189 195 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Amico_0726 7e9ac9f6e2482d20bcbd9f6dbef02f73 286 SUPERFAMILY SSF53335 14 269 1.91E-47 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0545 6ed534d0587bafdeb19628e8873b1b39 162 Gene3D G3DSA:3.90.960.10 7 162 5.7E-40 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Amico_0545 6ed534d0587bafdeb19628e8873b1b39 162 SUPERFAMILY SSF55826 12 158 1.96E-36 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Amico_0545 6ed534d0587bafdeb19628e8873b1b39 162 Pfam PF04073 Aminoacyl-tRNA editing domain 32 148 3.2E-29 T 14-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Amico_1319 98c28aa57ce11a67500b040cfc29ca09 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 18 422 8.2E-125 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1319 98c28aa57ce11a67500b040cfc29ca09 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 9 417 6.6E-106 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1319 98c28aa57ce11a67500b040cfc29ca09 426 PIRSF PIRSF006066 1 426 7.9E-123 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0127 a401ee82942a2f046f6b56389c82c636 760 Pfam PF00271 Helicase conserved C-terminal domain 505 614 2.8E-10 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_0127 a401ee82942a2f046f6b56389c82c636 760 Gene3D G3DSA:1.10.3210.30 4 225 4.9E-16 T 14-10-2018 IPR038257 CRISPR-associated Cas3-type HD domain superfamily Amico_0127 a401ee82942a2f046f6b56389c82c636 760 SUPERFAMILY SSF52540 299 627 6.99E-29 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0127 a401ee82942a2f046f6b56389c82c636 760 SMART SM00487 283 492 0.0027 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Amico_0127 a401ee82942a2f046f6b56389c82c636 760 SMART SM00490 533 616 4.7E-4 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_0127 a401ee82942a2f046f6b56389c82c636 760 TIGRFAM TIGR01596 cas3_HD: CRISPR-associated endonuclease Cas3-HD 20 231 3.8E-17 T 14-10-2018 IPR006483 CRISPR-associated Cas3-type HD domain Amico_0127 a401ee82942a2f046f6b56389c82c636 760 Gene3D G3DSA:3.40.50.300 287 475 1.9E-8 T 14-10-2018 Amico_0127 a401ee82942a2f046f6b56389c82c636 760 TIGRFAM TIGR01587 cas3_core: CRISPR-associated helicase Cas3 303 624 3.1E-56 T 14-10-2018 IPR006474 Helicase Cas3, CRISPR-associated, core Amico_0127 a401ee82942a2f046f6b56389c82c636 760 Gene3D G3DSA:3.40.50.300 476 666 1.3E-19 T 14-10-2018 Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 SUPERFAMILY SSF53067 108 315 1.53E-37 T 14-10-2018 Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 Gene3D G3DSA:3.30.420.40 8 320 1.9E-116 T 14-10-2018 Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 Pfam PF00814 Glycoprotease family 30 311 1.5E-91 T 14-10-2018 IPR000905 Gcp-like domain Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 ProSitePatterns PS01016 Glycoprotease family signature. 102 122 - T 14-10-2018 IPR017860 Peptidase M22, conserved site Reactome: R-HSA-6782315 Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 TIGRFAM TIGR03723 T6A_TsaD_YgjD: tRNA threonylcarbamoyl adenosine modification protein TsaD 8 318 2.5E-123 T 14-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 SUPERFAMILY SSF53067 7 126 1.1E-26 T 14-10-2018 Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 Gene3D G3DSA:3.30.420.40 135 298 1.9E-116 T 14-10-2018 Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 Hamap MF_01445 tRNA N6-adenosine threonylcarbamoyltransferase [tsaD]. 5 336 60.257 T 14-10-2018 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD GO:0002949|GO:0004222 Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 TIGRFAM TIGR00329 gcp_kae1: metallohydrolase, glycoprotease/Kae1 family 8 311 6.5E-106 T 14-10-2018 IPR017861 Kae1/TsaD family Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 137 149 8.6E-48 T 14-10-2018 IPR017861 Kae1/TsaD family Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 82 102 8.6E-48 T 14-10-2018 IPR017861 Kae1/TsaD family Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 271 280 8.6E-48 T 14-10-2018 IPR017861 Kae1/TsaD family Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 103 122 8.6E-48 T 14-10-2018 IPR017861 Kae1/TsaD family Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 160 181 8.6E-48 T 14-10-2018 IPR017861 Kae1/TsaD family Amico_0580 65ba57bd64c69c82b9282cc77de2c2f4 337 PRINTS PR00789 O-sialoglycoprotein endopeptidase (M22) metallo-protease family signature 8 21 8.6E-48 T 14-10-2018 IPR017861 Kae1/TsaD family Amico_1786 ee99ca823de3b146c3eccfa17eba8bd4 397 ProSitePatterns PS00599 Aminotransferases class-II pyridoxal-phosphate attachment site. 238 247 - T 14-10-2018 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site GO:0016740 Amico_1786 ee99ca823de3b146c3eccfa17eba8bd4 397 Pfam PF00155 Aminotransferase class I and II 44 382 1.2E-64 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_1786 ee99ca823de3b146c3eccfa17eba8bd4 397 SUPERFAMILY SSF53383 5 391 4.08E-119 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1786 ee99ca823de3b146c3eccfa17eba8bd4 397 Gene3D G3DSA:3.90.1150.10 36 384 9.7E-142 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1786 ee99ca823de3b146c3eccfa17eba8bd4 397 TIGRFAM TIGR01825 gly_Cac_T_rel: putative pyridoxal phosphate-dependent acyltransferase 8 393 3.2E-170 T 14-10-2018 IPR010962 Putative 8-amino-7-oxononanoate synthase, Archaea/Firmicutes type Amico_1786 ee99ca823de3b146c3eccfa17eba8bd4 397 Gene3D G3DSA:3.40.640.10 56 291 9.7E-142 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1331 905351541add7fe2b757cdd2b10b49da 795 Gene3D G3DSA:3.40.50.300 278 446 7.5E-16 T 14-10-2018 Amico_1331 905351541add7fe2b757cdd2b10b49da 795 Pfam PF01935 Domain of unknown function DUF87 32 85 1.8E-6 T 14-10-2018 IPR002789 Helicase HerA, central domain Amico_1331 905351541add7fe2b757cdd2b10b49da 795 Gene3D G3DSA:3.40.50.300 9 135 1.5E-10 T 14-10-2018 Amico_1331 905351541add7fe2b757cdd2b10b49da 795 SUPERFAMILY SSF52540 24 443 3.12E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0906 91fa908953d83d80fea7527c37f547c0 648 Pfam PF09972 Predicted membrane protein (DUF2207) 28 578 6.9E-69 T 14-10-2018 IPR018702 Protein of unknown function DUF2207, membrane Amico_0927 5ff297ccf420bba0451a0ef26608cf6d 238 Gene3D G3DSA:2.30.42.10 153 238 2.7E-10 T 14-10-2018 Amico_0927 5ff297ccf420bba0451a0ef26608cf6d 238 SMART SM00228 152 225 1.3E-4 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Amico_0927 5ff297ccf420bba0451a0ef26608cf6d 238 SUPERFAMILY SSF50156 152 234 7.1E-12 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Amico_0927 5ff297ccf420bba0451a0ef26608cf6d 238 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 150 203 5.6E-7 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Amico_0085 1179dfddd736f7caa20b8d7c612f1cd0 259 Pfam PF09339 IclR helix-turn-helix domain 13 62 2.1E-14 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_0085 1179dfddd736f7caa20b8d7c612f1cd0 259 SMART SM00346 11 100 9.4E-24 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_0085 1179dfddd736f7caa20b8d7c612f1cd0 259 SUPERFAMILY SSF46785 11 82 1.37E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0085 1179dfddd736f7caa20b8d7c612f1cd0 259 SUPERFAMILY SSF55781 75 257 4.38E-52 T 14-10-2018 Amico_0085 1179dfddd736f7caa20b8d7c612f1cd0 259 Gene3D G3DSA:3.30.450.40 83 259 1.9E-62 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_0085 1179dfddd736f7caa20b8d7c612f1cd0 259 Gene3D G3DSA:1.10.10.10 10 82 1.2E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0085 1179dfddd736f7caa20b8d7c612f1cd0 259 Pfam PF01614 Bacterial transcriptional regulator 127 253 6.5E-37 T 14-10-2018 IPR014757 Transcription regulator IclR, C-terminal Amico_1083 bd83692c2376054b5925a42ddfd9e364 83 Gene3D G3DSA:3.90.940.10 1 72 7.8E-6 T 14-10-2018 IPR012293 RNA polymerase subunit, RPB6/omega GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Amico_1083 bd83692c2376054b5925a42ddfd9e364 83 SUPERFAMILY SSF63562 14 65 1.33E-5 T 14-10-2018 IPR036161 RPB6/omega subunit-like superfamily GO:0003677|GO:0003899|GO:0006351 KEGG: 00230+2.7.7.6|KEGG: 00240+2.7.7.6|Reactome: R-HSA-112382|Reactome: R-HSA-113418|Reactome: R-HSA-167152|Reactome: R-HSA-167158|Reactome: R-HSA-167160|Reactome: R-HSA-167161|Reactome: R-HSA-167162|Reactome: R-HSA-167172|Reactome: R-HSA-167200|Reactome: R-HSA-167238|Reactome: R-HSA-167242|Reactome: R-HSA-167243|Reactome: R-HSA-167246|Reactome: R-HSA-167287|Reactome: R-HSA-167290|Reactome: R-HSA-168325|Reactome: R-HSA-1834949|Reactome: R-HSA-203927|Reactome: R-HSA-427413|Reactome: R-HSA-452723|Reactome: R-HSA-5250924|Reactome: R-HSA-5578749|Reactome: R-HSA-5601884|Reactome: R-HSA-5617472|Reactome: R-HSA-674695|Reactome: R-HSA-6781823|Reactome: R-HSA-6781827|Reactome: R-HSA-6782135|Reactome: R-HSA-6782210|Reactome: R-HSA-6796648|Reactome: R-HSA-6803529|Reactome: R-HSA-6807505|Reactome: R-HSA-72086|Reactome: R-HSA-72163|Reactome: R-HSA-72165|Reactome: R-HSA-72203|Reactome: R-HSA-73762|Reactome: R-HSA-73772|Reactome: R-HSA-73776|Reactome: R-HSA-73777|Reactome: R-HSA-73779|Reactome: R-HSA-73780|Reactome: R-HSA-73863|Reactome: R-HSA-73980|Reactome: R-HSA-749476|Reactome: R-HSA-75953|Reactome: R-HSA-75955|Reactome: R-HSA-76042|Reactome: R-HSA-76061|Reactome: R-HSA-76066|Reactome: R-HSA-76071|Reactome: R-HSA-77075|Reactome: R-HSA-8851708|Reactome: R-HSA-9018519 Amico_0122 cbecc2fd11d8db000eabb6686d9bd297 94 SUPERFAMILY SSF143430 3 77 1.16E-20 T 14-10-2018 Amico_0122 cbecc2fd11d8db000eabb6686d9bd297 94 Hamap MF_01471 CRISPR-associated endoribonuclease Cas2 [cas2]. 3 92 14.218 T 14-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Amico_0122 cbecc2fd11d8db000eabb6686d9bd297 94 Pfam PF09827 CRISPR associated protein Cas2 4 73 6.6E-19 T 14-10-2018 IPR019199 Virulence-associated protein D / CRISPR associated protein Cas2 Amico_0122 cbecc2fd11d8db000eabb6686d9bd297 94 TIGRFAM TIGR01573 cas2: CRISPR-associated endonuclease Cas2 4 82 4.5E-16 T 14-10-2018 IPR021127 CRISPR-associated endonuclease Cas2 GO:0004521|GO:0043571 Amico_0122 cbecc2fd11d8db000eabb6686d9bd297 94 Gene3D G3DSA:3.30.70.240 1 93 1.4E-22 T 14-10-2018 Amico_0709 bfa443a55fc7a4fee3341e4364bdd324 348 SUPERFAMILY SSF46589 17 103 6.28E-20 T 14-10-2018 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm GO:0000166 Amico_0709 bfa443a55fc7a4fee3341e4364bdd324 348 SUPERFAMILY SSF55681 96 337 7.23E-71 T 14-10-2018 Amico_0709 bfa443a55fc7a4fee3341e4364bdd324 348 TIGRFAM TIGR00468 pheS: phenylalanine--tRNA ligase, alpha subunit 43 340 7.2E-94 T 14-10-2018 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20|Reactome: R-HSA-379716 Amico_0709 bfa443a55fc7a4fee3341e4364bdd324 348 Gene3D G3DSA:3.30.930.10 13 341 2.4E-108 T 14-10-2018 Amico_0709 bfa443a55fc7a4fee3341e4364bdd324 348 Pfam PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain 24 89 1.2E-23 T 14-10-2018 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal GO:0000166|GO:0004826|GO:0005524|GO:0005737|GO:0006432 KEGG: 00970+6.1.1.20 Amico_0709 bfa443a55fc7a4fee3341e4364bdd324 348 Pfam PF01409 tRNA synthetases class II core domain (F) 96 339 1.9E-91 T 14-10-2018 IPR002319 Phenylalanyl-tRNA synthetase GO:0000049|GO:0004812|GO:0005524|GO:0005737|GO:0043039 KEGG: 00970+6.1.1.20 Amico_0709 bfa443a55fc7a4fee3341e4364bdd324 348 Hamap MF_00281 Phenylalanine--tRNA ligase alpha subunit [pheS]. 12 343 43.991 T 14-10-2018 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial GO:0004826 KEGG: 00970+6.1.1.20 Amico_1477 1343c236eefdec1b9287c61a7b450b59 219 SUPERFAMILY SSF51569 2 213 2.72E-73 T 14-10-2018 Amico_1477 1343c236eefdec1b9287c61a7b450b59 219 Gene3D G3DSA:3.20.20.70 1 219 1.1E-86 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_1477 1343c236eefdec1b9287c61a7b450b59 219 Pfam PF00923 Transaldolase/Fructose-6-phosphate aldolase 3 203 7.0E-57 T 14-10-2018 IPR001585 Transaldolase/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Amico_1477 1343c236eefdec1b9287c61a7b450b59 219 ProSitePatterns PS01054 Transaldolase signature 1. 24 32 - T 14-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Amico_1477 1343c236eefdec1b9287c61a7b450b59 219 Hamap MF_00494 Probable transaldolase [tal]. 1 215 43.707 T 14-10-2018 IPR022999 Transaldolase type 3B, putative GO:0004801 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 Amico_1477 1343c236eefdec1b9287c61a7b450b59 219 TIGRFAM TIGR00875 fsa_talC_mipB: fructose-6-phosphate aldolase 2 212 1.5E-91 T 14-10-2018 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723 Amico_1477 1343c236eefdec1b9287c61a7b450b59 219 ProSitePatterns PS00958 Transaldolase active site. 81 98 - T 14-10-2018 IPR018225 Transaldolase, active site GO:0005975 KEGG: 00030+2.2.1.2|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-163754|Reactome: R-HSA-6791055|Reactome: R-HSA-6791462|Reactome: R-HSA-71336|Reactome: R-HSA-8950505 Amico_0586 5bb8dc1a7cc1b1121a00612d5a25520d 651 TIGRFAM TIGR01104 V_PPase: V-type H(+)-translocating pyrophosphatase 6 650 4.8E-255 T 14-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Amico_0586 5bb8dc1a7cc1b1121a00612d5a25520d 651 PIRSF PIRSF001265 2 651 3.2E-266 T 14-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Amico_0586 5bb8dc1a7cc1b1121a00612d5a25520d 651 Hamap MF_01129 Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 1 651 25.21 T 14-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Amico_0586 5bb8dc1a7cc1b1121a00612d5a25520d 651 Pfam PF03030 Inorganic H+ pyrophosphatase 12 646 1.1E-271 T 14-10-2018 IPR004131 Pyrophosphate-energised proton pump GO:0004427|GO:0009678|GO:0016020|GO:1902600 KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Amico_1793 fc5bc070d9eca0722910d2282b3d4f99 417 Hamap MF_01074 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide nickel insertion protein [larC]. 1 413 36.978 T 14-10-2018 IPR002822 Nickel insertion protein Amico_1793 fc5bc070d9eca0722910d2282b3d4f99 417 TIGRFAM TIGR00299 TIGR00299: TIGR00299 family protein 5 402 2.7E-90 T 14-10-2018 IPR002822 Nickel insertion protein Amico_1793 fc5bc070d9eca0722910d2282b3d4f99 417 Gene3D G3DSA:3.30.70.1380 267 354 1.1E-8 T 14-10-2018 Amico_1793 fc5bc070d9eca0722910d2282b3d4f99 417 Pfam PF01969 Protein of unknown function DUF111 4 402 1.3E-132 T 14-10-2018 IPR002822 Nickel insertion protein Amico_0851 46756bfe5d481d1052be016bdf7d2dd4 300 ProSitePatterns PS00723 Polyprenyl synthases signature 1. 85 101 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site Amico_0851 46756bfe5d481d1052be016bdf7d2dd4 300 ProSitePatterns PS00444 Polyprenyl synthases signature 2. 219 231 - T 14-10-2018 IPR033749 Polyprenyl synthetase, conserved site Amico_0851 46756bfe5d481d1052be016bdf7d2dd4 300 Pfam PF00348 Polyprenyl synthetase 36 268 4.9E-56 T 14-10-2018 IPR000092 Polyprenyl synthetase GO:0008299 Amico_0851 46756bfe5d481d1052be016bdf7d2dd4 300 Gene3D G3DSA:1.10.600.10 4 297 4.2E-92 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Amico_0851 46756bfe5d481d1052be016bdf7d2dd4 300 SUPERFAMILY SSF48576 17 285 4.32E-80 T 14-10-2018 IPR008949 Isoprenoid synthase domain superfamily Amico_0401 d07eff97f0124358ae020faa82e20a46 174 SMART SM00903 9 155 3.8E-16 T 14-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Amico_0401 d07eff97f0124358ae020faa82e20a46 174 Gene3D G3DSA:2.30.110.10 4 171 4.0E-35 T 14-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Amico_0401 d07eff97f0124358ae020faa82e20a46 174 SUPERFAMILY SSF50475 8 154 4.86E-32 T 14-10-2018 Amico_0401 d07eff97f0124358ae020faa82e20a46 174 Pfam PF01613 Flavin reductase like domain 12 153 3.8E-19 T 14-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Amico_0173 c1e01dc9f5904050cc1b0b38ec5c06ad 549 Pfam PF03577 Peptidase family C69 40 482 5.3E-56 T 14-10-2018 IPR005322 Peptidase C69, dipeptidase A GO:0006508|GO:0016805 Amico_0173 c1e01dc9f5904050cc1b0b38ec5c06ad 549 Gene3D G3DSA:3.60.60.10 41 253 2.3E-5 T 14-10-2018 Amico_0423 f9f483a9d4cd267c02de7d4d165dd16f 547 Gene3D G3DSA:3.30.980.10 66 199 2.6E-16 T 14-10-2018 Amico_0423 f9f483a9d4cd267c02de7d4d165dd16f 547 PRINTS PR00988 Uridine kinase signature 315 326 8.5E-8 T 14-10-2018 Amico_0423 f9f483a9d4cd267c02de7d4d165dd16f 547 PRINTS PR00988 Uridine kinase signature 283 300 8.5E-8 T 14-10-2018 Amico_0423 f9f483a9d4cd267c02de7d4d165dd16f 547 PRINTS PR00988 Uridine kinase signature 360 375 8.5E-8 T 14-10-2018 Amico_0423 f9f483a9d4cd267c02de7d4d165dd16f 547 Gene3D G3DSA:3.40.50.300 233 491 2.3E-53 T 14-10-2018 Amico_0423 f9f483a9d4cd267c02de7d4d165dd16f 547 SUPERFAMILY SSF55186 65 215 4.53E-21 T 14-10-2018 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily GO:0000166 Amico_0423 f9f483a9d4cd267c02de7d4d165dd16f 547 SUPERFAMILY SSF52540 281 544 8.19E-25 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0423 f9f483a9d4cd267c02de7d4d165dd16f 547 Pfam PF00485 Phosphoribulokinase / Uridine kinase family 285 481 4.6E-22 T 14-10-2018 IPR006083 Phosphoribulokinase/uridine kinase GO:0005524|GO:0016301 Reactome: R-HSA-73614 Amico_0423 f9f483a9d4cd267c02de7d4d165dd16f 547 SMART SM00382 282 456 0.0028 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1715 3ded7d808bf4d8fd67f80dfd9dece202 619 SUPERFAMILY SSF51735 140 272 2.09E-18 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1715 3ded7d808bf4d8fd67f80dfd9dece202 619 SUPERFAMILY SSF51735 282 546 1.14E-57 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1715 3ded7d808bf4d8fd67f80dfd9dece202 619 Gene3D G3DSA:3.40.50.720 139 265 3.6E-37 T 14-10-2018 Amico_1715 3ded7d808bf4d8fd67f80dfd9dece202 619 Pfam PF13727 CoA-binding domain 66 239 5.0E-17 T 14-10-2018 Amico_1715 3ded7d808bf4d8fd67f80dfd9dece202 619 Pfam PF02719 Polysaccharide biosynthesis protein 284 568 2.9E-119 T 14-10-2018 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain Amico_1715 3ded7d808bf4d8fd67f80dfd9dece202 619 Gene3D G3DSA:3.40.50.720 279 607 2.3E-115 T 14-10-2018 Amico_1846 eb27635c52bbaa6687622fe9fa9f7ca7 456 SUPERFAMILY SSF48173 210 446 2.22E-56 T 14-10-2018 IPR036134 Cryptochrome/DNA photolyase, FAD-binding domain-like superfamily Reactome: R-HSA-400253 Amico_1846 eb27635c52bbaa6687622fe9fa9f7ca7 456 Pfam PF00875 DNA photolyase 19 175 2.5E-30 T 14-10-2018 IPR006050 DNA photolyase, N-terminal Reactome: R-HSA-400253 Amico_1846 eb27635c52bbaa6687622fe9fa9f7ca7 456 SUPERFAMILY SSF52425 17 198 1.15E-40 T 14-10-2018 IPR036155 Cryptochrome/photolyase, N-terminal domain superfamily Reactome: R-HSA-400253 Amico_1846 eb27635c52bbaa6687622fe9fa9f7ca7 456 Gene3D G3DSA:3.40.50.620 1 140 2.6E-45 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1846 eb27635c52bbaa6687622fe9fa9f7ca7 456 Gene3D G3DSA:1.25.40.80 141 308 1.2E-45 T 14-10-2018 Amico_1846 eb27635c52bbaa6687622fe9fa9f7ca7 456 TIGRFAM TIGR00591 phr2: deoxyribodipyrimidine photolyase 14 447 1.1E-181 T 14-10-2018 IPR008148 DNA photolyase class 2 GO:0003904|GO:0006281 Amico_1846 eb27635c52bbaa6687622fe9fa9f7ca7 456 ProSitePatterns PS01083 DNA photolyases class 2 signature 1. 285 299 - T 14-10-2018 IPR032673 DNA photolyase class 2, conserved site Amico_1846 eb27635c52bbaa6687622fe9fa9f7ca7 456 Gene3D G3DSA:1.10.579.10 309 453 2.9E-66 T 14-10-2018 Amico_1846 eb27635c52bbaa6687622fe9fa9f7ca7 456 ProSitePatterns PS01084 DNA photolyases class 2 signature 2. 412 431 - T 14-10-2018 IPR032673 DNA photolyase class 2, conserved site Amico_0365 fc5d24a457a22c130f1e051b5181fe09 209 Gene3D G3DSA:3.30.2010.10 24 107 3.6E-10 T 14-10-2018 Amico_0365 fc5d24a457a22c130f1e051b5181fe09 209 Pfam PF01435 Peptidase family M48 37 202 3.9E-25 T 14-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Amico_1430 9128334ee9b97faca78570f1a3cc79f6 262 Pfam PF00005 ABC transporter 24 183 7.8E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1430 9128334ee9b97faca78570f1a3cc79f6 262 Gene3D G3DSA:3.40.50.300 2 256 1.0E-59 T 14-10-2018 Amico_1430 9128334ee9b97faca78570f1a3cc79f6 262 SMART SM00382 32 232 5.9E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1430 9128334ee9b97faca78570f1a3cc79f6 262 SUPERFAMILY SSF52540 7 256 9.02E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1430 9128334ee9b97faca78570f1a3cc79f6 262 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 233 255 1.8E-12 T 14-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Amico_1018 3788c7d8288886ad20dbd0b28186ea1b 354 SUPERFAMILY SSF52518 1 251 9.03E-59 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1018 3788c7d8288886ad20dbd0b28186ea1b 354 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 14 185 9.9E-50 T 14-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Amico_1018 3788c7d8288886ad20dbd0b28186ea1b 354 Gene3D G3DSA:3.40.50.970 1 188 1.1E-60 T 14-10-2018 Amico_1018 3788c7d8288886ad20dbd0b28186ea1b 354 SUPERFAMILY SSF52922 241 351 2.43E-24 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1018 3788c7d8288886ad20dbd0b28186ea1b 354 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 249 343 1.4E-24 T 14-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Amico_1018 3788c7d8288886ad20dbd0b28186ea1b 354 Gene3D G3DSA:3.40.50.920 237 352 1.2E-24 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1258 f472b8290fd35f2708766ce5ce1df07c 358 SUPERFAMILY SSF109998 45 216 2.35E-23 T 14-10-2018 IPR027304 Trigger factor/SurA domain superfamily Amico_1258 f472b8290fd35f2708766ce5ce1df07c 358 Gene3D G3DSA:1.10.4030.30 47 189 9.4E-25 T 14-10-2018 Amico_1258 f472b8290fd35f2708766ce5ce1df07c 358 Gene3D G3DSA:3.10.50.40 190 270 9.4E-25 T 14-10-2018 Amico_1258 f472b8290fd35f2708766ce5ce1df07c 358 Pfam PF13145 PPIC-type PPIASE domain 169 294 8.1E-14 T 14-10-2018 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type GO:0003755 Amico_1258 f472b8290fd35f2708766ce5ce1df07c 358 Pfam PF13624 SurA N-terminal domain 3 159 2.8E-20 T 14-10-2018 Amico_1532 2c83d00b8fe17f122dc3eb61cda4f6b5 138 PIRSF PIRSF003230 1 138 2.1E-44 T 14-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Amico_1532 2c83d00b8fe17f122dc3eb61cda4f6b5 138 SUPERFAMILY SSF54637 5 131 8.34E-39 T 14-10-2018 IPR029069 HotDog domain superfamily Amico_1532 2c83d00b8fe17f122dc3eb61cda4f6b5 138 Pfam PF03061 Thioesterase superfamily 19 101 6.0E-17 T 14-10-2018 IPR006683 Thioesterase domain Reactome: R-HSA-77289 Amico_1532 2c83d00b8fe17f122dc3eb61cda4f6b5 138 Gene3D G3DSA:3.10.129.10 4 136 5.6E-42 T 14-10-2018 Amico_1532 2c83d00b8fe17f122dc3eb61cda4f6b5 138 TIGRFAM TIGR00051 TIGR00051: acyl-CoA thioester hydrolase, YbgC/YbaW family 9 115 7.7E-28 T 14-10-2018 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family GO:0016787 Amico_1882 d3e3e6874152a5ca21c53a5f2449c6ed 381 Gene3D G3DSA:1.10.1060.10 285 374 1.8E-10 T 14-10-2018 IPR009051 Alpha-helical ferredoxin GO:0051536 Amico_1882 d3e3e6874152a5ca21c53a5f2449c6ed 381 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 347 358 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1882 d3e3e6874152a5ca21c53a5f2449c6ed 381 Pfam PF13534 4Fe-4S dicluster domain 296 362 1.6E-10 T 14-10-2018 Amico_1882 d3e3e6874152a5ca21c53a5f2449c6ed 381 SUPERFAMILY SSF51430 1 325 4.98E-61 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Amico_1882 d3e3e6874152a5ca21c53a5f2449c6ed 381 Pfam PF00248 Aldo/keto reductase family 16 265 6.2E-37 T 14-10-2018 IPR023210 NADP-dependent oxidoreductase domain Amico_1882 d3e3e6874152a5ca21c53a5f2449c6ed 381 Gene3D G3DSA:3.20.20.100 1 284 8.6E-58 T 14-10-2018 IPR036812 NADP-dependent oxidoreductase domain superfamily Amico_1394 11a0944b4db8c07528b41792cb16adf3 348 Pfam PF07355 Glycine/sarcosine/betaine reductase selenoprotein B (GRDB) 3 348 4.7E-172 T 14-10-2018 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 Amico_1394 11a0944b4db8c07528b41792cb16adf3 348 TIGRFAM TIGR01918 various_sel_PB: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family 4 348 1.0E-154 T 14-10-2018 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 Pfam PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region 441 525 1.4E-33 T 14-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 Pfam PF00037 4Fe-4S binding domain 572 594 1.1E-8 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 Pfam PF00037 4Fe-4S binding domain 543 564 1.1E-5 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 SMART SM00928 440 485 3.5E-25 T 14-10-2018 IPR019575 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain GO:0051539 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 Gene3D G3DSA:3.10.20.600 343 437 1.1E-35 T 14-10-2018 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 SUPERFAMILY SSF142019 110 351 3.27E-94 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 Gene3D G3DSA:3.40.50.11540 164 342 1.2E-80 T 14-10-2018 IPR037225 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 SUPERFAMILY SSF52833 4 94 8.5E-27 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 Pfam PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit 159 330 4.5E-48 T 14-10-2018 IPR011538 NADH-ubiquinone oxidoreductase 51kDa subunit, FMN-binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 Pfam PF10531 SLBB domain 354 403 3.4E-9 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 SUPERFAMILY SSF142984 352 435 3.14E-26 T 14-10-2018 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 Gene3D G3DSA:3.40.30.10 4 100 8.1E-31 T 14-10-2018 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 SUPERFAMILY SSF140490 437 538 2.35E-39 T 14-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 Gene3D G3DSA:3.30.70.20 542 596 6.7E-13 T 14-10-2018 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 Gene3D G3DSA:1.20.1440.230 438 538 1.2E-35 T 14-10-2018 IPR037207 NADH-ubiquinone oxidoreductase 51kDa subunit, iron-sulphur binding domain superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 3 81 4.8E-9 T 14-10-2018 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 SUPERFAMILY SSF54862 540 595 1.51E-14 T 14-10-2018 Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 579 590 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1556 a7401ebd9392b35ee6b6c7a44497401c 597 ProSitePatterns PS00645 Respiratory-chain NADH dehydrogenase 51 Kd subunit signature 2. 453 464 - T 14-10-2018 IPR001949 NADH:ubiquinone oxidoreductase, 51kDa subunit, conserved site GO:0008137|GO:0010181|GO:0051539|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1505 cc127c248c5309fbc9207bf2a6939e87 349 Gene3D G3DSA:3.40.1390.10 4 97 4.2E-9 T 14-10-2018 Amico_1505 cc127c248c5309fbc9207bf2a6939e87 349 Hamap MF_00523 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase [lpxD]. 14 330 30.235 T 14-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 Amico_1505 cc127c248c5309fbc9207bf2a6939e87 349 ProSitePatterns PS00101 Hexapeptide-repeat containing-transferases signature. 138 166 - T 14-10-2018 IPR018357 Hexapeptide transferase, conserved site GO:0016740 Reactome: R-HSA-446205 Amico_1505 cc127c248c5309fbc9207bf2a6939e87 349 Gene3D G3DSA:2.160.10.10 102 314 5.0E-59 T 14-10-2018 Amico_1505 cc127c248c5309fbc9207bf2a6939e87 349 SUPERFAMILY SSF51161 73 319 6.94E-73 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Amico_1505 cc127c248c5309fbc9207bf2a6939e87 349 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 112 145 5.1E-4 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_1505 cc127c248c5309fbc9207bf2a6939e87 349 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 148 181 1.7E-5 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_1505 cc127c248c5309fbc9207bf2a6939e87 349 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 227 262 6.9E-7 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_1505 cc127c248c5309fbc9207bf2a6939e87 349 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 263 293 5.7E-4 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_1505 cc127c248c5309fbc9207bf2a6939e87 349 TIGRFAM TIGR01853 lipid_A_lpxD: UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD 13 333 2.0E-91 T 14-10-2018 IPR007691 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD GO:0009245|GO:0016410 Amico_1838 82d92907550086525d9b7de710fdf0d7 250 SMART SM00346 8 96 2.6E-15 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_1838 82d92907550086525d9b7de710fdf0d7 250 SUPERFAMILY SSF55781 77 239 7.85E-40 T 14-10-2018 Amico_1838 82d92907550086525d9b7de710fdf0d7 250 Gene3D G3DSA:1.10.10.10 6 80 4.3E-15 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1838 82d92907550086525d9b7de710fdf0d7 250 Gene3D G3DSA:3.30.450.40 81 241 1.4E-43 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_1838 82d92907550086525d9b7de710fdf0d7 250 Pfam PF09339 IclR helix-turn-helix domain 11 59 7.1E-12 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_1838 82d92907550086525d9b7de710fdf0d7 250 Pfam PF01614 Bacterial transcriptional regulator 123 235 3.8E-20 T 14-10-2018 IPR014757 Transcription regulator IclR, C-terminal Amico_1838 82d92907550086525d9b7de710fdf0d7 250 SUPERFAMILY SSF46785 8 80 4.77E-12 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0792 2dab18f3dfb5a2910c37353588b17976 166 Gene3D G3DSA:3.40.50.300 9 158 2.6E-31 T 14-10-2018 Amico_0792 2dab18f3dfb5a2910c37353588b17976 166 Pfam PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE 18 134 3.3E-30 T 14-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Amico_0792 2dab18f3dfb5a2910c37353588b17976 166 SUPERFAMILY SSF52540 32 123 1.39E-15 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0792 2dab18f3dfb5a2910c37353588b17976 166 TIGRFAM TIGR00150 T6A_YjeE: tRNA threonylcarbamoyl adenosine modification protein YjeE 24 145 1.6E-25 T 14-10-2018 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE GO:0002949 Amico_0853 88add85280679612dd1530d9f1d6c1c4 64 Gene3D G3DSA:2.30.170.40 19 64 7.3E-21 T 14-10-2018 IPR037147 Ribosomal protein L28/L24 superfamily GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0853 88add85280679612dd1530d9f1d6c1c4 64 Hamap MF_00373 50S ribosomal protein L28 [rpmB]. 1 63 19.446 T 14-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0853 88add85280679612dd1530d9f1d6c1c4 64 SUPERFAMILY SSF143800 1 63 5.1E-25 T 14-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0853 88add85280679612dd1530d9f1d6c1c4 64 Pfam PF00830 Ribosomal L28 family 3 59 2.3E-22 T 14-10-2018 IPR026569 Ribosomal protein L28/L24 GO:0003735 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0853 88add85280679612dd1530d9f1d6c1c4 64 TIGRFAM TIGR00009 L28: ribosomal protein bL28 1 57 2.4E-23 T 14-10-2018 IPR001383 Ribosomal protein L28 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_1449 463a5d203ce061f8358fc300209b0b9c 286 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 53 195 2.7E-26 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Amico_1449 463a5d203ce061f8358fc300209b0b9c 286 Pfam PF12367 Pyruvate ferredoxin oxidoreductase beta subunit C terminal 199 262 3.0E-21 T 14-10-2018 IPR032686 Pyruvate ferredoxin oxidoreductase beta subunit, C-terminal Amico_1449 463a5d203ce061f8358fc300209b0b9c 286 Gene3D G3DSA:3.40.50.970 67 216 6.6E-21 T 14-10-2018 Amico_1449 463a5d203ce061f8358fc300209b0b9c 286 SUPERFAMILY SSF52518 11 252 3.19E-69 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1449 463a5d203ce061f8358fc300209b0b9c 286 TIGRFAM TIGR02177 PorB_KorB: 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family 14 272 2.3E-102 T 14-10-2018 IPR011896 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 ProSitePatterns PS00878 Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 60 78 - T 14-10-2018 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 SUPERFAMILY SSF50621 250 391 2.51E-33 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 Pfam PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain 40 274 1.3E-53 T 14-10-2018 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal GO:0003824 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 Gene3D G3DSA:3.20.20.10 39 277 2.4E-95 T 14-10-2018 IPR029066 PLP-binding barrel Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 Gene3D G3DSA:2.40.37.10 30 384 2.4E-95 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 SUPERFAMILY SSF51419 31 277 1.25E-64 T 14-10-2018 IPR029066 PLP-binding barrel Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 80 92 1.6E-19 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 60 78 1.6E-19 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 369 382 1.6E-19 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 265 284 1.6E-19 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 PRINTS PR01179 Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 182 195 1.6E-19 T 14-10-2018 IPR000183 Ornithine/DAP/Arg decarboxylase GO:0003824 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 Pfam PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain 275 369 5.5E-15 T 14-10-2018 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal GO:0003824 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 PRINTS PR01182 Ornithine decarboxylase signature 32 56 4.1E-21 T 14-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 PRINTS PR01182 Ornithine decarboxylase signature 58 85 4.1E-21 T 14-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 PRINTS PR01182 Ornithine decarboxylase signature 102 126 4.1E-21 T 14-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 PRINTS PR01182 Ornithine decarboxylase signature 132 154 4.1E-21 T 14-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Amico_0342 bf92d56933ee84326aa27747494d7d3c 395 PRINTS PR01182 Ornithine decarboxylase signature 333 343 4.1E-21 T 14-10-2018 IPR002433 Ornithine decarboxylase GO:0006596 Amico_0725 e39a251cbfc20c2e970a0e5e3021dace 358 Pfam PF00472 RF-1 domain 211 320 5.2E-43 T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Amico_0725 e39a251cbfc20c2e970a0e5e3021dace 358 Gene3D G3DSA:3.30.160.20 210 296 6.7E-99 T 14-10-2018 Amico_0725 e39a251cbfc20c2e970a0e5e3021dace 358 SUPERFAMILY SSF75620 10 352 6.67E-131 T 14-10-2018 Amico_0725 e39a251cbfc20c2e970a0e5e3021dace 358 ProSitePatterns PS00745 Prokaryotic-type class I peptide chain release factors signature. 227 243 - T 14-10-2018 IPR000352 Peptide chain release factor class I/class II GO:0003747|GO:0006415 Amico_0725 e39a251cbfc20c2e970a0e5e3021dace 358 TIGRFAM TIGR00019 prfA: peptide chain release factor 1 4 355 1.5E-158 T 14-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Amico_0725 e39a251cbfc20c2e970a0e5e3021dace 358 Hamap MF_00093 Peptide chain release factor 1 [prfA]. 3 356 39.551 T 14-10-2018 IPR004373 Peptide chain release factor 1 GO:0005737|GO:0006415|GO:0016149 Amico_0725 e39a251cbfc20c2e970a0e5e3021dace 358 Pfam PF03462 PCRF domain 11 203 4.5E-69 T 14-10-2018 IPR005139 Peptide chain release factor GO:0006415 Amico_0725 e39a251cbfc20c2e970a0e5e3021dace 358 Gene3D G3DSA:3.30.70.1660 111 341 6.7E-99 T 14-10-2018 Amico_0725 e39a251cbfc20c2e970a0e5e3021dace 358 SMART SM00937 65 178 1.2E-51 T 14-10-2018 IPR005139 Peptide chain release factor GO:0006415 Amico_1053 3530119341e52172f3f1f55c218c5106 203 Gene3D G3DSA:3.40.50.300 1 202 8.6E-61 T 14-10-2018 Amico_1053 3530119341e52172f3f1f55c218c5106 203 SUPERFAMILY SSF52540 1 202 6.19E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1053 3530119341e52172f3f1f55c218c5106 203 Pfam PF02223 Thymidylate kinase 5 193 2.2E-39 T 14-10-2018 IPR039430 Thymidylate kinase-like domain KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210 Amico_1053 3530119341e52172f3f1f55c218c5106 203 TIGRFAM TIGR00041 DTMP_kinase: dTMP kinase 1 193 3.8E-41 T 14-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Amico_1053 3530119341e52172f3f1f55c218c5106 203 ProSitePatterns PS01331 Thymidylate kinase signature. 89 101 - T 14-10-2018 IPR018095 Thymidylate kinase, conserved site GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Amico_1053 3530119341e52172f3f1f55c218c5106 203 Hamap MF_00165 Thymidylate kinase [tmk]. 1 201 26.312 T 14-10-2018 IPR018094 Thymidylate kinase GO:0004798|GO:0005524|GO:0006233 KEGG: 00240+2.7.4.9|MetaCyc: PWY-6545|MetaCyc: PWY-7184|MetaCyc: PWY-7187|MetaCyc: PWY-7197|MetaCyc: PWY-7198|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Amico_0715 4bc0f76f6de11687e90d10b1854a67f5 307 Pfam PF02971 Formiminotransferase domain 184 285 5.9E-24 T 14-10-2018 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_0715 4bc0f76f6de11687e90d10b1854a67f5 307 Gene3D G3DSA:3.30.70.670 184 303 9.4E-36 T 14-10-2018 IPR037070 Formiminotransferase, C-terminal subdomain superfamily GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_0715 4bc0f76f6de11687e90d10b1854a67f5 307 TIGRFAM TIGR02024 FtcD: glutamate formiminotransferase 3 299 5.4E-115 T 14-10-2018 IPR004227 Formiminotransferase catalytic domain GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_0715 4bc0f76f6de11687e90d10b1854a67f5 307 Gene3D G3DSA:3.30.990.10 2 183 3.1E-60 T 14-10-2018 IPR037064 Formiminotransferase, N-terminal subdomain superfamily GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Amico_0715 4bc0f76f6de11687e90d10b1854a67f5 307 SUPERFAMILY SSF55116 4 181 1.7E-59 T 14-10-2018 IPR022384 Formiminotransferase catalytic domain superfamily GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Amico_0715 4bc0f76f6de11687e90d10b1854a67f5 307 Pfam PF07837 Formiminotransferase domain, N-terminal subdomain 5 181 4.1E-63 T 14-10-2018 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Amico_0715 4bc0f76f6de11687e90d10b1854a67f5 307 SUPERFAMILY SSF55116 184 299 3.4E-41 T 14-10-2018 IPR022384 Formiminotransferase catalytic domain superfamily GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Amico_0715 4bc0f76f6de11687e90d10b1854a67f5 307 SMART SM01221 183 297 3.5E-65 T 14-10-2018 IPR013802 Formiminotransferase, C-terminal subdomain GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_0715 4bc0f76f6de11687e90d10b1854a67f5 307 SMART SM01222 4 182 1.8E-93 T 14-10-2018 IPR012886 Formiminotransferase, N-terminal subdomain GO:0005542|GO:0016740 KEGG: 00340+2.1.2.5|KEGG: 00670+2.1.2.5|MetaCyc: PWY-5030 Amico_1514 10c396ebac9daff8f5c1b296c7e6cd61 139 SUPERFAMILY SSF50249 13 89 5.07E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1514 10c396ebac9daff8f5c1b296c7e6cd61 139 Gene3D G3DSA:2.40.50.140 10 91 2.8E-26 T 14-10-2018 Amico_1514 10c396ebac9daff8f5c1b296c7e6cd61 139 SMART SM00316 13 83 8.2E-24 T 14-10-2018 IPR022967 RNA-binding domain, S1 Amico_1514 10c396ebac9daff8f5c1b296c7e6cd61 139 Pfam PF00575 S1 RNA binding domain 14 83 4.2E-17 T 14-10-2018 IPR003029 S1 domain GO:0003676 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 TIGRFAM TIGR03591 polynuc_phos: polyribonucleotide nucleotidyltransferase 9 689 8.3E-290 T 14-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 SUPERFAMILY SSF50249 617 700 3.51E-19 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 Pfam PF00575 S1 RNA binding domain 617 682 4.5E-15 T 14-10-2018 IPR003029 S1 domain GO:0003676 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 Gene3D G3DSA:3.30.230.70 1 228 3.2E-81 T 14-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 Pfam PF01138 3' exoribonuclease family, domain 1 13 142 3.8E-20 T 14-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 Pfam PF01138 3' exoribonuclease family, domain 1 320 455 3.2E-21 T 14-10-2018 IPR001247 Exoribonuclease, phosphorolytic domain 1 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 SUPERFAMILY SSF54211 292 486 2.02E-48 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 Hamap MF_01595 Polyribonucleotide nucleotidyltransferase [pnp]. 1 691 29.503 T 14-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 Pfam PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain 246 316 4.6E-12 T 14-10-2018 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 Pfam PF00013 KH domain 557 611 3.4E-11 T 14-10-2018 IPR004088 K Homology domain, type 1 GO:0003723 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 SMART SM00322 550 615 5.0E-10 T 14-10-2018 IPR004087 K Homology domain GO:0003676 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 SUPERFAMILY SSF55666 449 543 1.02E-26 T 14-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 Gene3D G3DSA:2.40.50.140 549 670 1.1E-45 T 14-10-2018 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 SUPERFAMILY SSF46915 240 317 1.36E-12 T 14-10-2018 IPR036456 Polyribonucleotide nucleotidyltransferase, RNA-binding domain superfamily GO:0003723|GO:0006396 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 SUPERFAMILY SSF54211 5 142 3.85E-46 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 Gene3D G3DSA:3.30.230.70 233 548 2.8E-111 T 14-10-2018 IPR027408 PNPase/RNase PH domain superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 Pfam PF03725 3' exoribonuclease family, domain 2 460 528 2.8E-8 T 14-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 Pfam PF03725 3' exoribonuclease family, domain 2 145 208 4.1E-14 T 14-10-2018 IPR015847 Exoribonuclease, phosphorolytic domain 2 Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 SUPERFAMILY SSF55666 136 229 4.06E-27 T 14-10-2018 IPR036345 Exoribonuclease, PH domain 2 superfamily Reactome: R-HSA-380994|Reactome: R-HSA-429958|Reactome: R-HSA-450385|Reactome: R-HSA-450513|Reactome: R-HSA-450604|Reactome: R-HSA-6791226 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 SMART SM00316 618 688 1.7E-22 T 14-10-2018 IPR022967 RNA-binding domain, S1 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 PIRSF PIRSF005499 1 721 2.3E-288 T 14-10-2018 IPR012162 Polyribonucleotide nucleotidyltransferase GO:0003723|GO:0004654|GO:0006402 KEGG: 00230+2.7.7.8|KEGG: 00240+2.7.7.8 Amico_0701 327b8a80e295d905e0c559cdad203d3c 748 SUPERFAMILY SSF54791 553 638 1.63E-23 T 14-10-2018 IPR036612 K Homology domain, type 1 superfamily GO:0003723 Amico_0331 519863fa3eacbe578b898e4a62e904a4 222 TIGRFAM TIGR00080 pimt: protein-L-isoaspartate O-methyltransferase 14 211 3.6E-62 T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Amico_0331 519863fa3eacbe578b898e4a62e904a4 222 ProSitePatterns PS01279 Protein-L-isoaspartate(D-aspartate) O-methyltransferase signature. 134 149 - T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Amico_0331 519863fa3eacbe578b898e4a62e904a4 222 Hamap MF_00090 Protein-L-isoaspartate O-methyltransferase [pcm]. 3 214 35.005 T 14-10-2018 IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase GO:0004719|GO:0006464 Amico_0331 519863fa3eacbe578b898e4a62e904a4 222 SUPERFAMILY SSF53335 4 211 5.31E-48 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0331 519863fa3eacbe578b898e4a62e904a4 222 Gene3D G3DSA:3.40.50.150 2 218 7.7E-76 T 14-10-2018 Amico_0331 519863fa3eacbe578b898e4a62e904a4 222 Pfam PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) 14 209 1.3E-60 T 14-10-2018 Amico_0257 69fc5682bdbb816a29c35aa852da5ca8 207 Gene3D G3DSA:3.20.20.70 1 207 5.8E-74 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0257 69fc5682bdbb816a29c35aa852da5ca8 207 TIGRFAM TIGR00693 thiE: thiamine-phosphate diphosphorylase 8 201 3.6E-65 T 14-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_0257 69fc5682bdbb816a29c35aa852da5ca8 207 SUPERFAMILY SSF51391 5 205 2.49E-69 T 14-10-2018 IPR036206 Thiamin phosphate synthase superfamily KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_0257 69fc5682bdbb816a29c35aa852da5ca8 207 Pfam PF02581 Thiamine monophosphate synthase 9 189 2.7E-65 T 14-10-2018 IPR022998 Thiamine phosphate synthase/TenI KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_0257 69fc5682bdbb816a29c35aa852da5ca8 207 Hamap MF_00097 Thiamine-phosphate synthase [thiE]. 6 207 28.973 T 14-10-2018 IPR034291 Thiamine phosphate synthase GO:0004789|GO:0009228 KEGG: 00730+2.5.1.3|MetaCyc: PWY-6893|MetaCyc: PWY-6894|MetaCyc: PWY-6897|MetaCyc: PWY-6907|MetaCyc: PWY-6908|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_1362 27fd498a701f867ec3e0bb0a03e7f8e7 231 SUPERFAMILY SSF46894 140 211 1.33E-22 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Amico_1362 27fd498a701f867ec3e0bb0a03e7f8e7 231 Pfam PF00072 Response regulator receiver domain 7 118 1.4E-25 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1362 27fd498a701f867ec3e0bb0a03e7f8e7 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 182 194 6.1E-15 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1362 27fd498a701f867ec3e0bb0a03e7f8e7 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 166 182 6.1E-15 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1362 27fd498a701f867ec3e0bb0a03e7f8e7 231 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 152 166 6.1E-15 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1362 27fd498a701f867ec3e0bb0a03e7f8e7 231 Pfam PF00196 Bacterial regulatory proteins, luxR family 152 206 1.4E-20 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1362 27fd498a701f867ec3e0bb0a03e7f8e7 231 SMART SM00421 149 206 4.0E-26 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1362 27fd498a701f867ec3e0bb0a03e7f8e7 231 ProSitePatterns PS00622 LuxR-type HTH domain signature. 166 193 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1362 27fd498a701f867ec3e0bb0a03e7f8e7 231 SMART SM00448 4 117 1.1E-24 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1362 27fd498a701f867ec3e0bb0a03e7f8e7 231 Gene3D G3DSA:3.40.50.12740 4 211 2.9E-64 T 14-10-2018 Amico_1362 27fd498a701f867ec3e0bb0a03e7f8e7 231 SUPERFAMILY SSF52172 3 135 5.27E-29 T 14-10-2018 IPR011006 CheY-like superfamily Amico_0499 329ee1406396d6d82fca69c62f7799a0 265 Gene3D G3DSA:3.40.1640.10 5 128 6.7E-45 T 14-10-2018 Amico_0499 329ee1406396d6d82fca69c62f7799a0 265 Gene3D G3DSA:3.30.2040.10 129 236 7.1E-47 T 14-10-2018 Amico_0499 329ee1406396d6d82fca69c62f7799a0 265 Pfam PF07286 Protein of unknown function (DUF1445) 114 256 1.9E-63 T 14-10-2018 IPR009906 D-glutamate cyclase Amico_0499 329ee1406396d6d82fca69c62f7799a0 265 Hamap MF_01830 Putative hydro-lyase . 10 264 54.341 T 14-10-2018 IPR016938 Uncharacterised protein family UPF0317 Amico_0499 329ee1406396d6d82fca69c62f7799a0 265 SUPERFAMILY SSF160920 8 256 8.37E-113 T 14-10-2018 IPR038021 Putative hydro-lyase Amico_0499 329ee1406396d6d82fca69c62f7799a0 265 PIRSF PIRSF029755 4 265 1.3E-120 T 14-10-2018 IPR016938 Uncharacterised protein family UPF0317 Amico_1881 20576de055ba08d9a20be68d7653c3e7 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 178 195 1.4E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1881 20576de055ba08d9a20be68d7653c3e7 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 9 26 1.4E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1881 20576de055ba08d9a20be68d7653c3e7 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 222 242 1.4E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1881 20576de055ba08d9a20be68d7653c3e7 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 157 176 1.4E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1881 20576de055ba08d9a20be68d7653c3e7 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 84 95 1.4E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1881 20576de055ba08d9a20be68d7653c3e7 263 PRINTS PR00081 Glucose/ribitol dehydrogenase family signature 131 147 1.4E-30 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1881 20576de055ba08d9a20be68d7653c3e7 263 SUPERFAMILY SSF51735 6 259 3.4E-73 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1881 20576de055ba08d9a20be68d7653c3e7 263 Pfam PF13561 Enoyl-(Acyl carrier protein) reductase 17 258 3.4E-55 T 14-10-2018 Amico_1881 20576de055ba08d9a20be68d7653c3e7 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 137 145 1.8E-5 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1881 20576de055ba08d9a20be68d7653c3e7 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 1.8E-5 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1881 20576de055ba08d9a20be68d7653c3e7 263 PRINTS PR00080 Short-chain dehydrogenase/reductase (SDR) superfamily signature 157 176 1.8E-5 T 14-10-2018 IPR002347 Short-chain dehydrogenase/reductase SDR Amico_1881 20576de055ba08d9a20be68d7653c3e7 263 Gene3D G3DSA:3.40.50.720 4 261 8.0E-70 T 14-10-2018 Amico_1179 dfdc589a438ad918284c3b2830ef7bef 660 Pfam PF00580 UvrD/REP helicase N-terminal domain 11 273 5.2E-67 T 14-10-2018 IPR034739 UvrD/AddA helicase, N-terminal GO:0005524 Amico_1179 dfdc589a438ad918284c3b2830ef7bef 660 Gene3D G3DSA:3.40.50.300 282 628 3.3E-101 T 14-10-2018 Amico_1179 dfdc589a438ad918284c3b2830ef7bef 660 Gene3D G3DSA:1.10.486.10 384 543 3.3E-101 T 14-10-2018 Amico_1179 dfdc589a438ad918284c3b2830ef7bef 660 Gene3D G3DSA:3.40.50.300 11 274 6.5E-89 T 14-10-2018 Amico_1179 dfdc589a438ad918284c3b2830ef7bef 660 Pfam PF13361 UvrD-like helicase C-terminal domain 278 430 2.2E-29 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Amico_1179 dfdc589a438ad918284c3b2830ef7bef 660 Pfam PF13361 UvrD-like helicase C-terminal domain 504 610 7.7E-26 T 14-10-2018 IPR014017 UvrD-like DNA helicase, C-terminal GO:0005524|GO:0016787 Amico_1179 dfdc589a438ad918284c3b2830ef7bef 660 Gene3D G3DSA:1.10.10.160 118 188 6.5E-89 T 14-10-2018 IPR013986 DExx box DNA helicase domain superfamily Amico_1179 dfdc589a438ad918284c3b2830ef7bef 660 SUPERFAMILY SSF52540 5 633 3.97E-157 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1828 03112de054ac58db921b5ed6bf2a47d6 401 SUPERFAMILY SSF53187 3 398 2.71E-70 T 14-10-2018 Amico_1828 03112de054ac58db921b5ed6bf2a47d6 401 Gene3D G3DSA:3.30.70.360 202 316 3.9E-113 T 14-10-2018 Amico_1828 03112de054ac58db921b5ed6bf2a47d6 401 SUPERFAMILY SSF55031 202 306 1.05E-18 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1828 03112de054ac58db921b5ed6bf2a47d6 401 Pfam PF01546 Peptidase family M20/M25/M40 77 395 2.1E-27 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1828 03112de054ac58db921b5ed6bf2a47d6 401 Gene3D G3DSA:3.40.630.10 14 392 3.9E-113 T 14-10-2018 Amico_1828 03112de054ac58db921b5ed6bf2a47d6 401 TIGRFAM TIGR01879 hydantase: amidase, hydantoinase/carbamoylase family 9 397 9.9E-98 T 14-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 Amico_1828 03112de054ac58db921b5ed6bf2a47d6 401 PIRSF PIRSF001235 2 401 2.5E-110 T 14-10-2018 IPR010158 Amidase, carbamoylase-type GO:0016813 Amico_0542 c056c08032f1cdc47b2b9efb82cec4fc 315 Pfam PF16199 Radical_SAM C-terminal domain 178 256 1.8E-12 T 14-10-2018 IPR032432 Radical SAM, C-terminal extension Reactome: R-HSA-3214847 Amico_0542 c056c08032f1cdc47b2b9efb82cec4fc 315 Pfam PF04055 Radical SAM superfamily 9 164 7.4E-19 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_0542 c056c08032f1cdc47b2b9efb82cec4fc 315 SUPERFAMILY SSF102114 3 236 3.53E-39 T 14-10-2018 Amico_0542 c056c08032f1cdc47b2b9efb82cec4fc 315 Gene3D G3DSA:3.80.30.20 4 227 2.8E-16 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Amico_0542 c056c08032f1cdc47b2b9efb82cec4fc 315 SMART SM00729 3 214 1.0E-28 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Amico_1761 750c47d3e61204de3f4c841996fa2d12 358 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 49 326 1.7E-47 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_1761 750c47d3e61204de3f4c841996fa2d12 358 Gene3D G3DSA:3.40.190.170 35 354 2.4E-85 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1761 750c47d3e61204de3f4c841996fa2d12 358 SUPERFAMILY SSF53850 135 265 2.17E-5 T 14-10-2018 Amico_0900 3222d48ada23f95e4f5eb1ef017e18e3 67 ProSitePatterns PS00352 'Cold-shock' domain signature. 16 34 - T 14-10-2018 IPR019844 Cold-shock conserved site Amico_0900 3222d48ada23f95e4f5eb1ef017e18e3 67 PIRSF PIRSF002599 1 67 7.3E-25 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 Amico_0900 3222d48ada23f95e4f5eb1ef017e18e3 67 Pfam PF00313 'Cold-shock' DNA-binding domain 4 66 3.9E-31 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_0900 3222d48ada23f95e4f5eb1ef017e18e3 67 Gene3D G3DSA:2.40.50.140 3 65 5.1E-31 T 14-10-2018 Amico_0900 3222d48ada23f95e4f5eb1ef017e18e3 67 PRINTS PR00050 Cold shock protein signature 5 20 1.3E-19 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_0900 3222d48ada23f95e4f5eb1ef017e18e3 67 PRINTS PR00050 Cold shock protein signature 40 58 1.3E-19 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_0900 3222d48ada23f95e4f5eb1ef017e18e3 67 PRINTS PR00050 Cold shock protein signature 25 34 1.3E-19 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_0900 3222d48ada23f95e4f5eb1ef017e18e3 67 SUPERFAMILY SSF50249 3 66 3.58E-25 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0900 3222d48ada23f95e4f5eb1ef017e18e3 67 SMART SM00357 4 67 7.8E-33 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 Amico_1211 26888313f6c8c7027b85165514818fb4 233 Pfam PF01144 Coenzyme A transferase 12 204 1.2E-28 T 14-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Amico_1211 26888313f6c8c7027b85165514818fb4 233 SMART SM00882 12 206 1.1E-50 T 14-10-2018 IPR004165 Coenzyme A transferase family I GO:0008410 Reactome: R-HSA-77108 Amico_1211 26888313f6c8c7027b85165514818fb4 233 TIGRFAM TIGR02428 pcaJ_scoB_fam: 3-oxoacid CoA-transferase, B subunit 11 212 5.0E-82 T 14-10-2018 IPR012791 3-oxoacid CoA-transferase, subunit B GO:0008410 Reactome: R-HSA-77108 Amico_1211 26888313f6c8c7027b85165514818fb4 233 SUPERFAMILY SSF100950 11 221 5.86E-62 T 14-10-2018 IPR037171 NagB/RpiA transferase-like Amico_1211 26888313f6c8c7027b85165514818fb4 233 Gene3D G3DSA:3.40.1080.10 6 218 2.8E-83 T 14-10-2018 Amico_1334 7ea1afb05317902a7198754601a65611 373 SMART SM00530 25 80 1.4E-5 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_1334 7ea1afb05317902a7198754601a65611 373 Pfam PF06114 IrrE N-terminal-like domain 251 336 1.8E-5 T 14-10-2018 IPR010359 IrrE N-terminal-like domain Amico_1334 7ea1afb05317902a7198754601a65611 373 Gene3D G3DSA:1.10.260.40 18 117 6.5E-24 T 14-10-2018 Amico_1334 7ea1afb05317902a7198754601a65611 373 Pfam PF01381 Helix-turn-helix 26 78 2.7E-6 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_1334 7ea1afb05317902a7198754601a65611 373 TIGRFAM TIGR02607 antidote_HigA: addiction module antidote protein, HigA family 20 88 5.5E-18 T 14-10-2018 IPR013430 Toxin-antitoxin system, antidote protein, HigA GO:0003677 Amico_1334 7ea1afb05317902a7198754601a65611 373 SUPERFAMILY SSF47413 21 101 4.15E-20 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Amico_1180 24e3786058fd85cfef30c43956012767 219 PIRSF PIRSF005624 1 219 2.4E-81 T 14-10-2018 IPR012202 [NiFe]-hydrogenase/urease maturation factor, Ni2-binding GTPase GO:0003924|GO:0016151 Amico_1180 24e3786058fd85cfef30c43956012767 219 Pfam PF02492 CobW/HypB/UreG, nucleotide-binding domain 33 192 4.8E-29 T 14-10-2018 IPR003495 CobW/HypB/UreG, nucleotide-binding domain Amico_1180 24e3786058fd85cfef30c43956012767 219 SUPERFAMILY SSF52540 10 215 2.22E-34 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1180 24e3786058fd85cfef30c43956012767 219 Gene3D G3DSA:3.40.50.300 14 218 1.3E-60 T 14-10-2018 Amico_1180 24e3786058fd85cfef30c43956012767 219 TIGRFAM TIGR00073 hypB: hydrogenase accessory protein HypB 4 214 3.6E-75 T 14-10-2018 IPR004392 Hydrogenase maturation factor HypB GO:0016151|GO:0051604 Amico_1495 6a02f00202583780ec6b5555c8077968 757 Pfam PF02606 Tetraacyldisaccharide-1-P 4'-kinase 21 328 1.8E-87 T 14-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 Amico_1495 6a02f00202583780ec6b5555c8077968 757 SUPERFAMILY SSF53756 489 724 4.08E-15 T 14-10-2018 Amico_1495 6a02f00202583780ec6b5555c8077968 757 SUPERFAMILY SSF52540 53 209 7.83E-7 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1495 6a02f00202583780ec6b5555c8077968 757 Hamap MF_00409 Tetraacyldisaccharide 4'-kinase [lpxK]. 3 357 30.888 T 14-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 Amico_1495 6a02f00202583780ec6b5555c8077968 757 TIGRFAM TIGR00682 lpxK: tetraacyldisaccharide 4'-kinase 34 322 1.9E-60 T 14-10-2018 IPR003758 Tetraacyldisaccharide 4'-kinase GO:0005524|GO:0009029|GO:0009245 KEGG: 00540+2.7.1.130 Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 TIGRFAM TIGR00435 cysS: cysteine--tRNA ligase 3 470 1.0E-181 T 14-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 SUPERFAMILY SSF47323 342 469 5.95E-34 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 Gene3D G3DSA:1.20.120.640 306 470 1.1E-39 T 14-10-2018 Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 Hamap MF_00041 Cysteine--tRNA ligase [cysS]. 3 470 39.736 T 14-10-2018 IPR015803 Cysteine-tRNA ligase GO:0004817|GO:0005524|GO:0006423 KEGG: 00970+6.1.1.16 Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 SMART SM00840 354 419 9.0E-14 T 14-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 Gene3D G3DSA:3.40.50.620 1 305 8.4E-139 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 Pfam PF01406 tRNA synthetases class I (C) catalytic domain 18 313 2.0E-135 T 14-10-2018 IPR032678 tRNA synthetases class I, catalytic domain KEGG: 00970+6.1.1.16 Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 SUPERFAMILY SSF52374 5 312 2.2E-102 T 14-10-2018 Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 222 243 3.1E-29 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 62 71 3.1E-29 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 26 37 3.1E-29 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 PRINTS PR00983 Cysteinyl-tRNA synthetase signature 191 209 3.1E-29 T 14-10-2018 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase KEGG: 00970+6.1.1.16 Amico_1002 f6cdde5eb8fe3f40748b16ffc8a16f11 472 Pfam PF09190 DALR domain 354 417 6.7E-14 T 14-10-2018 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR GO:0000166|GO:0004817|GO:0005524|GO:0005737|GO:0006423 KEGG: 00970+6.1.1.16 Amico_1072 cb216b9c1d9970de836a1a4e5497e8ed 411 Hamap MF_01539 UPF0348 protein . 4 402 31.684 T 14-10-2018 IPR008513 Uncharacterised protein family UPF0348 Amico_1072 cb216b9c1d9970de836a1a4e5497e8ed 411 Pfam PF05636 HIGH Nucleotidyl Transferase 4 387 5.1E-112 T 14-10-2018 IPR008513 Uncharacterised protein family UPF0348 Amico_1072 cb216b9c1d9970de836a1a4e5497e8ed 411 SUPERFAMILY SSF52374 4 219 1.84E-15 T 14-10-2018 Amico_1072 cb216b9c1d9970de836a1a4e5497e8ed 411 Gene3D G3DSA:3.40.50.620 1 166 1.5E-33 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1217 1c5ea38a01beb49d6dc6cd3752d2472e 386 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 46 382 1.9E-59 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Amico_1217 1c5ea38a01beb49d6dc6cd3752d2472e 386 Gene3D G3DSA:2.40.30.170 64 310 1.2E-66 T 14-10-2018 Amico_1217 1c5ea38a01beb49d6dc6cd3752d2472e 386 Gene3D G3DSA:2.40.420.20 311 368 1.2E-66 T 14-10-2018 Amico_1217 1c5ea38a01beb49d6dc6cd3752d2472e 386 SUPERFAMILY SSF111369 64 307 1.96E-24 T 14-10-2018 Amico_1217 1c5ea38a01beb49d6dc6cd3752d2472e 386 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 73 303 7.6E-22 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Amico_1217 1c5ea38a01beb49d6dc6cd3752d2472e 386 Gene3D G3DSA:2.40.50.100 71 231 1.2E-66 T 14-10-2018 Amico_1217 1c5ea38a01beb49d6dc6cd3752d2472e 386 Gene3D G3DSA:1.10.287.470 105 196 1.2E-66 T 14-10-2018 Amico_0407 f407b15def4f54f262e8139ebdf4979e 191 Gene3D G3DSA:1.10.3210.10 1 157 1.6E-9 T 14-10-2018 Amico_0407 f407b15def4f54f262e8139ebdf4979e 191 SUPERFAMILY SSF109604 14 149 1.57E-14 T 14-10-2018 Amico_0407 f407b15def4f54f262e8139ebdf4979e 191 TIGRFAM TIGR00277 HDIG: HDIG domain 19 91 5.0E-9 T 14-10-2018 IPR006675 HDIG domain Amico_1338 7afa3cab419c318a39224d7d1ec26223 382 SUPERFAMILY SSF103473 9 374 1.83E-43 T 14-10-2018 IPR036259 MFS transporter superfamily Amico_1338 7afa3cab419c318a39224d7d1ec26223 382 Gene3D G3DSA:1.20.1250.20 4 374 3.2E-43 T 14-10-2018 Amico_1338 7afa3cab419c318a39224d7d1ec26223 382 Pfam PF07690 Major Facilitator Superfamily 11 338 2.5E-31 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Amico_1756 1654614d7fe0f87fe4a04d4361a2aab0 527 SUPERFAMILY SSF53383 41 494 1.85E-82 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1756 1654614d7fe0f87fe4a04d4361a2aab0 527 Gene3D G3DSA:3.40.640.10 99 370 7.4E-73 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1756 1654614d7fe0f87fe4a04d4361a2aab0 527 Pfam PF00266 Aminotransferase class-V 172 299 2.3E-9 T 14-10-2018 IPR000192 Aminotransferase class V domain Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 Gene3D G3DSA:3.30.230.10 479 682 1.9E-91 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 Pfam PF03144 Elongation factor Tu domain 2 319 385 2.4E-8 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 SMART SM00838 595 682 3.3E-48 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 TIGRFAM TIGR00484 EF-G: translation elongation factor G 7 687 8.5E-214 T 14-10-2018 IPR004540 Translation elongation factor EFG/EF2 GO:0003746|GO:0005525|GO:0005622|GO:0006414 Reactome: R-HSA-5389840 Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 Gene3D G3DSA:2.40.30.10 290 400 1.6E-27 T 14-10-2018 Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 Pfam PF00679 Elongation factor G C-terminus 595 681 2.2E-31 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 Gene3D G3DSA:3.30.70.240 599 669 1.9E-91 T 14-10-2018 Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 SUPERFAMILY SSF52540 5 279 1.56E-79 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 10 179 9.9E-13 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 Pfam PF14492 Elongation Factor G, domain II 399 471 2.6E-27 T 14-10-2018 Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 SMART SM00889 475 593 1.2E-68 T 14-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 SUPERFAMILY SSF50447 263 399 9.51E-27 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 Pfam PF00009 Elongation factor Tu GTP binding domain 8 278 1.6E-38 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 Gene3D G3DSA:3.40.50.300 2 289 5.2E-78 T 14-10-2018 Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 SUPERFAMILY SSF54980 595 687 3.21E-30 T 14-10-2018 IPR035647 EF-G domain III/V-like Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 SUPERFAMILY SSF54980 399 477 1.69E-20 T 14-10-2018 IPR035647 EF-G domain III/V-like Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 Gene3D G3DSA:3.30.70.870 401 478 2.9E-24 T 14-10-2018 Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 SUPERFAMILY SSF54211 474 594 3.03E-43 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_1371 a2b3114d17317b6f5e1542cb1cb5d6a6 693 Pfam PF03764 Elongation factor G, domain IV 474 593 4.6E-43 T 14-10-2018 IPR005517 Translation elongation factor EFG/EF2, domain IV GO:0005525 Amico_1417 10e60f0527a979e3bb9a372a32e23ef8 450 SUPERFAMILY SSF52540 184 436 1.65E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1417 10e60f0527a979e3bb9a372a32e23ef8 450 SUPERFAMILY SSF48024 8 119 3.53E-30 T 14-10-2018 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily GO:0003678|GO:0005524|GO:0006260 Amico_1417 10e60f0527a979e3bb9a372a32e23ef8 450 TIGRFAM TIGR00665 DnaB: replicative DNA helicase 10 446 1.5E-164 T 14-10-2018 IPR007692 DNA helicase, DnaB type GO:0003677|GO:0003678|GO:0005524|GO:0006260 Amico_1417 10e60f0527a979e3bb9a372a32e23ef8 450 Pfam PF00772 DnaB-like helicase N terminal domain 10 111 1.4E-26 T 14-10-2018 IPR007693 DNA helicase, DnaB-like, N-terminal GO:0003678|GO:0005524|GO:0006260 Amico_1417 10e60f0527a979e3bb9a372a32e23ef8 450 Gene3D G3DSA:3.40.50.300 164 446 1.5E-105 T 14-10-2018 Amico_1417 10e60f0527a979e3bb9a372a32e23ef8 450 Gene3D G3DSA:1.10.860.10 2 163 1.4E-52 T 14-10-2018 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal Amico_1417 10e60f0527a979e3bb9a372a32e23ef8 450 Pfam PF03796 DnaB-like helicase C terminal domain 186 444 4.4E-106 T 14-10-2018 IPR007694 DNA helicase, DnaB-like, C-terminal GO:0003678|GO:0005524|GO:0006260 Reactome: R-HSA-2151201 Amico_0627 49f0d65cd726e2ddd8d9753e62fdadc7 208 TIGRFAM TIGR03625 L3_bact: 50S ribosomal protein uL3 4 204 5.1E-87 T 14-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0627 49f0d65cd726e2ddd8d9753e62fdadc7 208 Hamap MF_01325_B 50S ribosomal protein L3 [rplC]. 2 208 38.314 T 14-10-2018 IPR019927 Ribosomal protein L3, bacterial/organelle-type GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0627 49f0d65cd726e2ddd8d9753e62fdadc7 208 Pfam PF00297 Ribosomal protein L3 99 183 2.3E-10 T 14-10-2018 IPR000597 Ribosomal protein L3 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0627 49f0d65cd726e2ddd8d9753e62fdadc7 208 ProSitePatterns PS00474 Ribosomal protein L3 signature. 102 125 - T 14-10-2018 IPR019926 Ribosomal protein L3, conserved site Amico_0627 49f0d65cd726e2ddd8d9753e62fdadc7 208 SUPERFAMILY SSF50447 1 205 1.06E-76 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Amico_0627 49f0d65cd726e2ddd8d9753e62fdadc7 208 Gene3D G3DSA:2.40.50.620 32 97 4.0E-20 T 14-10-2018 Amico_0627 49f0d65cd726e2ddd8d9753e62fdadc7 208 Gene3D G3DSA:2.40.30.10 129 207 6.5E-16 T 14-10-2018 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 Gene3D G3DSA:3.20.20.60 478 790 1.1E-86 T 14-10-2018 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 PIRSF PIRSF000854 536 785 6.0E-102 T 14-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 PIRSF PIRSF000854 1 541 2.4E-152 T 14-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 Gene3D G3DSA:3.50.30.10 350 457 8.9E-40 T 14-10-2018 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 SUPERFAMILY SSF51621 478 784 1.73E-88 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 Gene3D G3DSA:3.30.1490.20 3 192 2.5E-75 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 Pfam PF00391 PEP-utilising enzyme, mobile domain 378 449 7.8E-24 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 TIGRFAM TIGR01418 PEP_synth: phosphoenolpyruvate synthase 6 781 5.6E-302 T 14-10-2018 IPR006319 Phosphoenolpyruvate synthase GO:0006090|GO:0008986 KEGG: 00620+2.7.9.2|KEGG: 00680+2.7.9.2|KEGG: 00720+2.7.9.2|MetaCyc: PWY-5484|MetaCyc: PWY-6142 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 SUPERFAMILY SSF52009 349 454 8.5E-33 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 SUPERFAMILY SSF56059 3 375 4.83E-100 T 14-10-2018 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 ProSitePatterns PS00742 PEP-utilizing enzymes signature 2. 683 701 - T 14-10-2018 IPR023151 PEP-utilising enzyme, conserved site GO:0016772 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 Pfam PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain 19 338 4.7E-112 T 14-10-2018 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding GO:0005524|GO:0016301|GO:0016310 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 Pfam PF02896 PEP-utilising enzyme, TIM barrel domain 480 779 2.9E-74 T 14-10-2018 IPR000121 PEP-utilising enzyme, C-terminal GO:0016310|GO:0016772 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 ProSitePatterns PS00370 PEP-utilizing enzymes phosphorylation site signature. 408 419 - T 14-10-2018 IPR018274 PEP-utilising enzyme, active site GO:0016310|GO:0016772 Amico_0764 d40b38da6d53fa0b1822c7d3679a9e82 791 Gene3D G3DSA:3.30.470.20 193 349 6.1E-46 T 14-10-2018 Amico_1543 905eed9b7c5036f33568b3511ac7f09d 386 ProSitePatterns PS00759 ArgE / dapE / ACY1 / CPG2 / yscS family signature 2. 109 148 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Amico_1543 905eed9b7c5036f33568b3511ac7f09d 386 Gene3D G3DSA:3.40.630.10 15 373 6.9E-79 T 14-10-2018 Amico_1543 905eed9b7c5036f33568b3511ac7f09d 386 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 13 374 5.4E-66 T 14-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase Amico_1543 905eed9b7c5036f33568b3511ac7f09d 386 SUPERFAMILY SSF53187 9 383 3.52E-54 T 14-10-2018 Amico_1543 905eed9b7c5036f33568b3511ac7f09d 386 Pfam PF07687 Peptidase dimerisation domain 180 280 4.7E-14 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1543 905eed9b7c5036f33568b3511ac7f09d 386 Gene3D G3DSA:3.30.70.360 183 302 6.9E-79 T 14-10-2018 Amico_1543 905eed9b7c5036f33568b3511ac7f09d 386 Pfam PF01546 Peptidase family M20/M25/M40 75 382 2.3E-34 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1543 905eed9b7c5036f33568b3511ac7f09d 386 SUPERFAMILY SSF55031 182 296 1.94E-16 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_0765 9394490c2aa7e628b5eb8fc446f14a5a 774 Gene3D G3DSA:3.40.710.10 278 665 3.2E-116 T 14-10-2018 Amico_0765 9394490c2aa7e628b5eb8fc446f14a5a 774 Gene3D G3DSA:1.10.3810.10 75 272 3.6E-73 T 14-10-2018 IPR036950 Penicillin binding protein transglycosylase domain KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0765 9394490c2aa7e628b5eb8fc446f14a5a 774 Pfam PF00905 Penicillin binding protein transpeptidase domain 341 613 1.7E-36 T 14-10-2018 IPR001460 Penicillin-binding protein, transpeptidase GO:0008658 Amico_0765 9394490c2aa7e628b5eb8fc446f14a5a 774 SUPERFAMILY SSF56601 238 671 7.89E-117 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Amico_0765 9394490c2aa7e628b5eb8fc446f14a5a 774 Pfam PF00912 Transglycosylase 83 256 1.4E-61 T 14-10-2018 IPR001264 Glycosyl transferase, family 51 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0765 9394490c2aa7e628b5eb8fc446f14a5a 774 SUPERFAMILY SSF53955 72 282 2.47E-72 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Amico_0765 9394490c2aa7e628b5eb8fc446f14a5a 774 TIGRFAM TIGR02074 PBP_1a_fam: penicillin-binding protein, 1A family 92 618 1.1E-174 T 14-10-2018 Amico_0498 8432d3dc9a055805213e96a0a856b7b7 257 Hamap MF_00691 UPF0271 protein YbgL [ybgL]. 2 246 44.694 T 14-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Amico_0498 8432d3dc9a055805213e96a0a856b7b7 257 SUPERFAMILY SSF88713 3 253 2.0E-99 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Amico_0498 8432d3dc9a055805213e96a0a856b7b7 257 Pfam PF03746 LamB/YcsF family 4 240 4.3E-101 T 14-10-2018 IPR005501 UPF0271 family, LamB/YcsF/PxpA KEGG: 00480+3.5.2.9|MetaCyc: PWY-4041|MetaCyc: PWY-7942 Amico_0498 8432d3dc9a055805213e96a0a856b7b7 257 Gene3D G3DSA:3.20.20.370 2 256 3.7E-104 T 14-10-2018 Amico_1181 07f48982660c412c7a8938d10b084106 120 TIGRFAM TIGR00100 hypA: hydrogenase nickel insertion protein HypA 1 114 2.4E-27 T 14-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 Amico_1181 07f48982660c412c7a8938d10b084106 120 Hamap MF_00213 Hydrogenase maturation factor HypA [hypA]. 1 113 21.059 T 14-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 Amico_1181 07f48982660c412c7a8938d10b084106 120 PIRSF PIRSF004761 1 116 5.1E-30 T 14-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 Amico_1181 07f48982660c412c7a8938d10b084106 120 Gene3D G3DSA:3.30.2320.80 1 115 1.7E-30 T 14-10-2018 Amico_1181 07f48982660c412c7a8938d10b084106 120 Pfam PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA 1 112 9.8E-31 T 14-10-2018 IPR000688 Hydrogenase maturation factor HypA/HybF GO:0016151|GO:0051604 Amico_0033 c1738bc463a235f9f9b3481fbb6b9c45 306 TIGRFAM TIGR01186 proV: glycine betaine/L-proline transport ATP binding subunit 45 273 1.3E-103 T 14-10-2018 IPR005892 Glycine betaine transport ATP-binding subunit GO:0005524|GO:0016020|GO:0031460 Amico_0033 c1738bc463a235f9f9b3481fbb6b9c45 306 SUPERFAMILY SSF52540 39 272 5.32E-77 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0033 c1738bc463a235f9f9b3481fbb6b9c45 306 SMART SM00382 57 246 1.1E-18 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0033 c1738bc463a235f9f9b3481fbb6b9c45 306 Pfam PF00005 ABC transporter 49 196 2.0E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0033 c1738bc463a235f9f9b3481fbb6b9c45 306 Gene3D G3DSA:3.40.50.300 9 294 4.5E-80 T 14-10-2018 Amico_0033 c1738bc463a235f9f9b3481fbb6b9c45 306 ProSitePatterns PS00211 ABC transporters family signature. 169 183 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1840 2fa6124b60e9efab2edd4286b3a96edd 311 Pfam PF01515 Phosphate acetyl/butaryl transferase 19 80 1.0E-4 T 14-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Amico_1840 2fa6124b60e9efab2edd4286b3a96edd 311 Pfam PF01515 Phosphate acetyl/butaryl transferase 88 302 1.3E-46 T 14-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Amico_1840 2fa6124b60e9efab2edd4286b3a96edd 311 SUPERFAMILY SSF53659 19 306 1.34E-61 T 14-10-2018 Amico_1840 2fa6124b60e9efab2edd4286b3a96edd 311 Gene3D G3DSA:3.40.718.10 10 307 2.5E-93 T 14-10-2018 Amico_1840 2fa6124b60e9efab2edd4286b3a96edd 311 PIRSF PIRSF000428 5 309 1.6E-80 T 14-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Amico_0068 5ef30acece1adf1d952bf51cb154625d 292 Pfam PF02567 Phenazine biosynthesis-like protein 9 289 1.2E-51 T 14-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Amico_0068 5ef30acece1adf1d952bf51cb154625d 292 PIRSF PIRSF016184 1 292 2.2E-77 T 14-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Amico_0068 5ef30acece1adf1d952bf51cb154625d 292 TIGRFAM TIGR00654 PhzF_family: phenazine biosynthesis protein, PhzF family 3 291 2.6E-58 T 14-10-2018 IPR003719 Phenazine biosynthesis PhzF protein GO:0003824|GO:0009058 Amico_0068 5ef30acece1adf1d952bf51cb154625d 292 Gene3D G3DSA:3.10.310.10 7 283 8.5E-78 T 14-10-2018 Amico_0068 5ef30acece1adf1d952bf51cb154625d 292 Gene3D G3DSA:3.10.310.10 122 282 8.5E-78 T 14-10-2018 Amico_0068 5ef30acece1adf1d952bf51cb154625d 292 SUPERFAMILY SSF54506 3 291 6.4E-64 T 14-10-2018 Amico_0114 188885e13c003b9f8cb951cf7ca7590d 452 Pfam PF01235 Sodium:alanine symporter family 58 445 6.5E-147 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_0114 188885e13c003b9f8cb951cf7ca7590d 452 TIGRFAM TIGR00835 agcS: amino acid carrier protein 15 442 2.7E-150 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_0114 188885e13c003b9f8cb951cf7ca7590d 452 PRINTS PR00175 Sodium/alanine symporter signature 411 431 5.9E-55 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_0114 188885e13c003b9f8cb951cf7ca7590d 452 PRINTS PR00175 Sodium/alanine symporter signature 213 232 5.9E-55 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_0114 188885e13c003b9f8cb951cf7ca7590d 452 PRINTS PR00175 Sodium/alanine symporter signature 185 203 5.9E-55 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_0114 188885e13c003b9f8cb951cf7ca7590d 452 PRINTS PR00175 Sodium/alanine symporter signature 352 374 5.9E-55 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_0114 188885e13c003b9f8cb951cf7ca7590d 452 PRINTS PR00175 Sodium/alanine symporter signature 308 326 5.9E-55 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_0114 188885e13c003b9f8cb951cf7ca7590d 452 PRINTS PR00175 Sodium/alanine symporter signature 94 116 5.9E-55 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_0114 188885e13c003b9f8cb951cf7ca7590d 452 ProSitePatterns PS00873 Sodium:alanine symporter family signature. 94 109 - T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_0478 f51373f309a36f94adc4183886fc3054 264 Gene3D G3DSA:3.30.70.100 164 257 8.4E-26 T 14-10-2018 Amico_0478 f51373f309a36f94adc4183886fc3054 264 SUPERFAMILY SSF50182 98 163 1.01E-17 T 14-10-2018 IPR010920 LSM domain superfamily Amico_0478 f51373f309a36f94adc4183886fc3054 264 Gene3D G3DSA:2.30.30.60 113 162 4.7E-23 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Amico_0478 f51373f309a36f94adc4183886fc3054 264 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 127 161 - T 14-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 Amico_0478 f51373f309a36f94adc4183886fc3054 264 SUPERFAMILY SSF82861 14 96 3.27E-16 T 14-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Amico_0478 f51373f309a36f94adc4183886fc3054 264 SUPERFAMILY SSF82689 166 263 9.02E-31 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Amico_0478 f51373f309a36f94adc4183886fc3054 264 Pfam PF00924 Mechanosensitive ion channel 56 252 2.3E-50 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Amico_1767 462bc0ef651a768207eb194fe0da8936 456 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 334 434 1.4E-14 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Amico_1767 462bc0ef651a768207eb194fe0da8936 456 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 4 311 1.0E-68 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Amico_1767 462bc0ef651a768207eb194fe0da8936 456 Gene3D G3DSA:3.50.50.60 116 444 1.6E-168 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1767 462bc0ef651a768207eb194fe0da8936 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 107 125 1.9E-25 T 14-10-2018 Amico_1767 462bc0ef651a768207eb194fe0da8936 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 5 24 1.9E-25 T 14-10-2018 Amico_1767 462bc0ef651a768207eb194fe0da8936 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 1.9E-25 T 14-10-2018 Amico_1767 462bc0ef651a768207eb194fe0da8936 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 154 172 1.9E-25 T 14-10-2018 Amico_1767 462bc0ef651a768207eb194fe0da8936 456 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 1.9E-25 T 14-10-2018 Amico_1767 462bc0ef651a768207eb194fe0da8936 456 Gene3D G3DSA:3.50.50.60 5 344 1.6E-168 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1767 462bc0ef651a768207eb194fe0da8936 456 SUPERFAMILY SSF51905 3 320 2.92E-47 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1767 462bc0ef651a768207eb194fe0da8936 456 SUPERFAMILY SSF55424 327 450 1.27E-31 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Amico_1767 462bc0ef651a768207eb194fe0da8936 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 240 254 7.9E-19 T 14-10-2018 Amico_1767 462bc0ef651a768207eb194fe0da8936 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 154 179 7.9E-19 T 14-10-2018 Amico_1767 462bc0ef651a768207eb194fe0da8936 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 4 26 7.9E-19 T 14-10-2018 Amico_1767 462bc0ef651a768207eb194fe0da8936 456 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 281 288 7.9E-19 T 14-10-2018 Amico_1111 1435575188939674b8dcb1497c87ad50 810 TIGRFAM TIGR01760 tape_meas_TP901: phage tail tape measure protein, TP901 family, core region 176 523 3.3E-84 T 14-10-2018 IPR010090 Phage tail tape measure protein Amico_1111 1435575188939674b8dcb1497c87ad50 810 Pfam PF10145 Phage-related minor tail protein 216 413 5.8E-51 T 14-10-2018 IPR010090 Phage tail tape measure protein Amico_1562 de6fb26efa18e2fb09f96647cda8d775 459 PIRSF PIRSF006603 1 451 3.7E-88 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1562 de6fb26efa18e2fb09f96647cda8d775 459 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 418 1.6E-59 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1562 de6fb26efa18e2fb09f96647cda8d775 459 Pfam PF01554 MatE 22 182 4.0E-28 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1562 de6fb26efa18e2fb09f96647cda8d775 459 Pfam PF01554 MatE 250 399 3.7E-17 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1803 0826f77dc1db6076ffa98336fd52d62f 366 Gene3D G3DSA:3.40.50.720 2 193 3.8E-68 T 14-10-2018 Amico_1803 0826f77dc1db6076ffa98336fd52d62f 366 Pfam PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain 184 330 1.5E-45 T 14-10-2018 IPR003421 Opine dehydrogenase GO:0016491|GO:0050662|GO:0055114 Amico_1803 0826f77dc1db6076ffa98336fd52d62f 366 SUPERFAMILY SSF48179 186 359 5.1E-44 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Amico_1803 0826f77dc1db6076ffa98336fd52d62f 366 Gene3D G3DSA:1.10.1040.10 194 349 2.7E-55 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Amico_1803 0826f77dc1db6076ffa98336fd52d62f 366 Pfam PF02558 Ketopantoate reductase PanE/ApbA 4 104 2.7E-8 T 14-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain Amico_1803 0826f77dc1db6076ffa98336fd52d62f 366 SUPERFAMILY SSF51735 3 180 1.63E-19 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0908 7a5ab413b0a9f4910e5caec39adef2d5 360 SUPERFAMILY SSF52540 5 247 3.22E-86 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0908 7a5ab413b0a9f4910e5caec39adef2d5 360 Gene3D G3DSA:2.40.50.940 227 355 1.6E-11 T 14-10-2018 Amico_0908 7a5ab413b0a9f4910e5caec39adef2d5 360 Gene3D G3DSA:3.40.50.300 4 226 1.2E-65 T 14-10-2018 Amico_0908 7a5ab413b0a9f4910e5caec39adef2d5 360 ProSitePatterns PS00211 ABC transporters family signature. 139 153 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0908 7a5ab413b0a9f4910e5caec39adef2d5 360 SMART SM00382 33 216 8.7E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0908 7a5ab413b0a9f4910e5caec39adef2d5 360 Pfam PF08402 TOBE domain 284 358 6.4E-12 T 14-10-2018 IPR013611 Transport-associated OB, type 2 GO:0005524|GO:0022857|GO:0043190|GO:0055085 Amico_0908 7a5ab413b0a9f4910e5caec39adef2d5 360 Pfam PF00005 ABC transporter 25 166 3.1E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0908 7a5ab413b0a9f4910e5caec39adef2d5 360 Gene3D G3DSA:2.40.50.140 291 350 1.6E-11 T 14-10-2018 Amico_0908 7a5ab413b0a9f4910e5caec39adef2d5 360 SUPERFAMILY SSF50331 242 358 7.29E-12 T 14-10-2018 IPR008995 Molybdate/tungstate binding, C-terminal Amico_0343 6bfe71d6455c04c0630322f0dc8d255c 321 Gene3D G3DSA:3.60.15.10 23 283 2.8E-44 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_0343 6bfe71d6455c04c0630322f0dc8d255c 321 Pfam PF00753 Metallo-beta-lactamase superfamily 40 194 1.2E-15 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0343 6bfe71d6455c04c0630322f0dc8d255c 321 SMART SM00849 39 236 3.0E-24 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0343 6bfe71d6455c04c0630322f0dc8d255c 321 SUPERFAMILY SSF56281 23 279 1.44E-35 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 Pfam PF00679 Elongation factor G C-terminus 401 487 4.9E-18 T 14-10-2018 IPR000640 Elongation factor EFG, domain V-like Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 Gene3D G3DSA:3.30.70.3380 370 480 1.9E-35 T 14-10-2018 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 SUPERFAMILY SSF54980 401 496 6.71E-21 T 14-10-2018 IPR035647 EF-G domain III/V-like Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 7 175 3.4E-21 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 Gene3D G3DSA:3.30.70.2570 482 556 1.1E-29 T 14-10-2018 IPR038363 LepA, C-terminal domain superfamily Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 Pfam PF03144 Elongation factor Tu domain 2 207 277 3.8E-11 T 14-10-2018 IPR004161 Translation elongation factor EFTu-like, domain 2 GO:0005525 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 Pfam PF06421 GTP-binding protein LepA C-terminus 490 596 1.0E-47 T 14-10-2018 IPR013842 GTP-binding protein LepA, C-terminal Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 Gene3D G3DSA:2.40.30.10 188 287 2.2E-35 T 14-10-2018 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 SUPERFAMILY SSF52540 2 207 1.33E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 Gene3D G3DSA:3.40.50.300 1 187 8.0E-73 T 14-10-2018 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 Hamap MF_00071 Elongation factor 4 [lepA]. 1 600 282.953 T 14-10-2018 IPR006297 Elongation factor 4 GO:0005525 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 SUPERFAMILY SSF50447 167 290 3.3E-31 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 PRINTS PR00315 GTP-binding elongation factor signature 76 86 2.3E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 PRINTS PR00315 GTP-binding elongation factor signature 51 59 2.3E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 PRINTS PR00315 GTP-binding elongation factor signature 92 103 2.3E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 PRINTS PR00315 GTP-binding elongation factor signature 8 21 2.3E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 PRINTS PR00315 GTP-binding elongation factor signature 128 137 2.3E-14 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 TIGRFAM TIGR01393 lepA: elongation factor 4 5 598 4.4E-295 T 14-10-2018 IPR006297 Elongation factor 4 GO:0005525 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 Pfam PF00009 Elongation factor Tu GTP binding domain 5 183 5.2E-52 T 14-10-2018 IPR000795 Transcription factor, GTP-binding domain GO:0003924|GO:0005525 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 Gene3D G3DSA:3.30.70.870 288 369 6.6E-36 T 14-10-2018 Amico_1161 174086c101492edf3a1c8d6cb5bdff84 603 SUPERFAMILY SSF54980 294 372 3.45E-18 T 14-10-2018 IPR035647 EF-G domain III/V-like Amico_0251 177730969cd9082cf41f7d494cb8432a 175 SUPERFAMILY SSF55469 5 165 1.7E-40 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Amico_0251 177730969cd9082cf41f7d494cb8432a 175 Gene3D G3DSA:3.40.109.10 1 175 3.9E-45 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Amico_0251 177730969cd9082cf41f7d494cb8432a 175 Pfam PF00881 Nitroreductase family 12 66 3.3E-13 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Amico_0251 177730969cd9082cf41f7d494cb8432a 175 Pfam PF00881 Nitroreductase family 71 154 1.9E-7 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Amico_1671 4b2ea1ba2d25cdea6d02404d665a5424 342 Gene3D G3DSA:3.40.1190.20 1 342 1.1E-128 T 14-10-2018 IPR029056 Ribokinase-like Amico_1671 4b2ea1ba2d25cdea6d02404d665a5424 342 Pfam PF00294 pfkB family carbohydrate kinase 1 315 9.4E-38 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB Amico_1671 4b2ea1ba2d25cdea6d02404d665a5424 342 SUPERFAMILY SSF53613 1 326 1.43E-77 T 14-10-2018 IPR029056 Ribokinase-like Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 Gene3D G3DSA:3.30.470.20 189 326 1.9E-51 T 14-10-2018 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 SUPERFAMILY SSF51246 327 422 1.57E-29 T 14-10-2018 IPR011054 Rudiment single hybrid motif Reactome: R-HSA-196780 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 Gene3D G3DSA:3.30.1490.20 120 188 2.1E-20 T 14-10-2018 IPR013815 ATP-grasp fold, subdomain 1 GO:0005524 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 SMART SM01210 328 423 5.0E-49 T 14-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 Pfam PF02843 Phosphoribosylglycinamide synthetase, C domain 329 420 6.7E-30 T 14-10-2018 IPR020560 Phosphoribosylglycinamide synthetase, C-domain GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 Gene3D G3DSA:3.90.600.10 328 423 7.7E-35 T 14-10-2018 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 Pfam PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain 101 294 3.8E-69 T 14-10-2018 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 SUPERFAMILY SSF52440 2 101 2.45E-29 T 14-10-2018 IPR016185 Pre-ATP-grasp domain superfamily Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 ProSitePatterns PS00184 Phosphoribosylglycinamide synthetase signature. 288 295 - T 14-10-2018 IPR020559 Phosphoribosylglycinamide synthetase, conserved site GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 Pfam PF02844 Phosphoribosylglycinamide synthetase, N domain 2 100 4.1E-29 T 14-10-2018 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 Hamap MF_00138 Phosphoribosylamine--glycine ligase [purD]. 1 423 40.036 T 14-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 SUPERFAMILY SSF56059 102 318 3.18E-57 T 14-10-2018 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 SMART SM01209 101 294 3.2E-113 T 14-10-2018 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 Gene3D G3DSA:3.40.50.20 2 93 1.1E-30 T 14-10-2018 Amico_1170 da5273d24d06b4b33fa1c5d5921dae1c 423 TIGRFAM TIGR00877 purD: phosphoribosylamine--glycine ligase 2 422 1.0E-150 T 14-10-2018 IPR000115 Phosphoribosylglycinamide synthetase GO:0004637|GO:0009113 KEGG: 00230+6.3.4.13|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Amico_0080 c985c8b1f2dd0daa51e96df165434ce2 509 Gene3D G3DSA:3.40.50.800 399 506 1.5E-19 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily Amico_0080 c985c8b1f2dd0daa51e96df165434ce2 509 Pfam PF04073 Aminoacyl-tRNA editing domain 201 324 6.7E-25 T 14-10-2018 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain GO:0002161 KEGG: 00970+6.1.1.15 Amico_0080 c985c8b1f2dd0daa51e96df165434ce2 509 Gene3D G3DSA:3.90.960.10 186 333 3.3E-40 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Amico_0080 c985c8b1f2dd0daa51e96df165434ce2 509 Pfam PF03129 Anticodon binding domain 412 481 6.8E-11 T 14-10-2018 IPR004154 Anticodon-binding Amico_0080 c985c8b1f2dd0daa51e96df165434ce2 509 SUPERFAMILY SSF55826 173 332 1.44E-22 T 14-10-2018 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily GO:0002161 KEGG: 00970+6.1.1.15 Amico_0080 c985c8b1f2dd0daa51e96df165434ce2 509 SUPERFAMILY SSF52954 403 498 1.96E-18 T 14-10-2018 Amico_0241 b1d6b9dabf7ba766e1d304ca8f82f29b 309 Pfam PF02653 Branched-chain amino acid transport system / permease component 9 280 3.7E-36 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Amico_1626 5274d63352cfa6dfa4c35d55f1dbb861 91 Pfam PF04193 PQ loop repeat 23 60 5.5E-5 T 14-10-2018 IPR006603 PQ-loop repeat Amico_1626 5274d63352cfa6dfa4c35d55f1dbb861 91 Gene3D G3DSA:1.20.1280.290 1 89 4.8E-6 T 14-10-2018 Amico_0508 56f3107a8c8fb1f8f6170efdb799c9f1 302 SUPERFAMILY SSF51556 16 300 1.09E-24 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_0508 56f3107a8c8fb1f8f6170efdb799c9f1 302 Gene3D G3DSA:3.20.20.140 153 300 5.2E-6 T 14-10-2018 Amico_1239 9d4679e1af7ead920e0f846d2b5ebf2c 416 Pfam PF13660 Domain of unknown function (DUF4147) 8 230 1.3E-74 T 14-10-2018 IPR025286 MOFRL-associated domain Reactome: R-HSA-70350 Amico_1239 9d4679e1af7ead920e0f846d2b5ebf2c 416 Gene3D G3DSA:3.40.1480.10 247 408 3.9E-147 T 14-10-2018 IPR037035 Glycerate kinase-like, C-terminal domain superfamily Amico_1239 9d4679e1af7ead920e0f846d2b5ebf2c 416 Gene3D G3DSA:3.40.50.10180 36 246 3.9E-147 T 14-10-2018 IPR038614 Glycerate kinase, N-terminal domain superfamily Reactome: R-HSA-70350 Amico_1239 9d4679e1af7ead920e0f846d2b5ebf2c 416 Pfam PF05161 MOFRL family 302 407 2.2E-38 T 14-10-2018 IPR007835 MOFRL domain Reactome: R-HSA-70350 Amico_1239 9d4679e1af7ead920e0f846d2b5ebf2c 416 SUPERFAMILY SSF82544 2 413 8.89E-140 T 14-10-2018 Amico_1444 3f6a71d99c637e9b788aad87a638b236 216 ProSitePatterns PS00175 Phosphoglycerate mutase family phosphohistidine signature. 12 21 - T 14-10-2018 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site GO:0003824 Amico_1444 3f6a71d99c637e9b788aad87a638b236 216 PIRSF PIRSF000709 1 182 7.4E-10 T 14-10-2018 Amico_1444 3f6a71d99c637e9b788aad87a638b236 216 SMART SM00855 9 164 7.1E-19 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Amico_1444 3f6a71d99c637e9b788aad87a638b236 216 Gene3D G3DSA:3.40.50.1240 8 215 6.2E-56 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Amico_1444 3f6a71d99c637e9b788aad87a638b236 216 Pfam PF00300 Histidine phosphatase superfamily (branch 1) 10 195 2.5E-51 T 14-10-2018 IPR013078 Histidine phosphatase superfamily, clade-1 Amico_1444 3f6a71d99c637e9b788aad87a638b236 216 SUPERFAMILY SSF53254 8 211 3.47E-54 T 14-10-2018 IPR029033 Histidine phosphatase superfamily Amico_1689 874f50983317b4416600dbec74267d8a 190 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 28 156 2.5E-17 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1758 c719b4b56f547e93da551a6ac0ec4243 536 Gene3D G3DSA:3.20.20.140 60 484 1.9E-133 T 14-10-2018 Amico_1758 c719b4b56f547e93da551a6ac0ec4243 536 Gene3D G3DSA:2.30.40.10 9 501 1.9E-133 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1758 c719b4b56f547e93da551a6ac0ec4243 536 SUPERFAMILY SSF51338 4 529 1.22E-13 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1758 c719b4b56f547e93da551a6ac0ec4243 536 SUPERFAMILY SSF51556 59 484 2.42E-33 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_1758 c719b4b56f547e93da551a6ac0ec4243 536 Gene3D G3DSA:3.10.310.70 78 196 1.9E-133 T 14-10-2018 Amico_1758 c719b4b56f547e93da551a6ac0ec4243 536 Pfam PF07969 Amidohydrolase family 50 521 7.9E-94 T 14-10-2018 IPR013108 Amidohydrolase 3 Amico_1411 c7ab65a590e92fb90bf11e67ad776cd6 309 Gene3D G3DSA:2.40.420.20 226 307 2.4E-7 T 14-10-2018 Amico_0931 a46d3593b545199de255411f85a8fe01 399 SUPERFAMILY SSF52467 8 297 4.31E-6 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Amico_0931 a46d3593b545199de255411f85a8fe01 399 Pfam PF13289 SIR2-like domain 151 317 1.3E-21 T 14-10-2018 IPR039444 SIR2-like domain Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 SUPERFAMILY SSF50249 368 453 1.17E-21 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 SUPERFAMILY SSF50249 279 367 1.12E-25 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 SUPERFAMILY SSF50249 209 296 3.06E-26 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 Gene3D G3DSA:2.40.50.140 373 457 2.0E-25 T 14-10-2018 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 Gene3D G3DSA:2.40.50.140 206 288 3.4E-29 T 14-10-2018 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 Gene3D G3DSA:2.40.50.140 291 372 3.4E-28 T 14-10-2018 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 PRINTS PR00681 Ribosomal protein S1 signature 126 142 1.4E-45 T 14-10-2018 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 PRINTS PR00681 Ribosomal protein S1 signature 35 53 1.4E-45 T 14-10-2018 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 PRINTS PR00681 Ribosomal protein S1 signature 102 121 1.4E-45 T 14-10-2018 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 PRINTS PR00681 Ribosomal protein S1 signature 348 366 1.4E-45 T 14-10-2018 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 PRINTS PR00681 Ribosomal protein S1 signature 53 67 1.4E-45 T 14-10-2018 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 PRINTS PR00681 Ribosomal protein S1 signature 174 194 1.4E-45 T 14-10-2018 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 PRINTS PR00681 Ribosomal protein S1 signature 309 328 1.4E-45 T 14-10-2018 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 PRINTS PR00681 Ribosomal protein S1 signature 231 252 1.4E-45 T 14-10-2018 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 Pfam PF00575 S1 RNA binding domain 379 449 6.4E-18 T 14-10-2018 IPR003029 S1 domain GO:0003676 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 Pfam PF00575 S1 RNA binding domain 33 96 1.7E-8 T 14-10-2018 IPR003029 S1 domain GO:0003676 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 Pfam PF00575 S1 RNA binding domain 294 365 3.7E-21 T 14-10-2018 IPR003029 S1 domain GO:0003676 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 Pfam PF00575 S1 RNA binding domain 209 279 4.0E-24 T 14-10-2018 IPR003029 S1 domain GO:0003676 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 Pfam PF00575 S1 RNA binding domain 128 190 3.5E-6 T 14-10-2018 IPR003029 S1 domain GO:0003676 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 SUPERFAMILY SSF50249 15 126 8.21E-14 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 SMART SM00316 209 279 5.5E-27 T 14-10-2018 IPR022967 RNA-binding domain, S1 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 SMART SM00316 379 450 5.1E-23 T 14-10-2018 IPR022967 RNA-binding domain, S1 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 SMART SM00316 294 365 4.9E-26 T 14-10-2018 IPR022967 RNA-binding domain, S1 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 SMART SM00316 121 190 0.002 T 14-10-2018 IPR022967 RNA-binding domain, S1 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 SMART SM00316 33 105 2.1E-8 T 14-10-2018 IPR022967 RNA-binding domain, S1 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 Gene3D G3DSA:2.40.50.140 116 204 1.4E-7 T 14-10-2018 Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 SUPERFAMILY SSF50249 131 204 1.17E-9 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1023 271a6ed0960e07210d46ac70d9f1f728 503 Gene3D G3DSA:2.40.50.140 19 115 2.5E-15 T 14-10-2018 Amico_0982 9c9db0a68d989bb2f781d8fa7dd982c0 102 TIGRFAM TIGR00103 DNA_YbaB_EbfC: DNA-binding protein, YbaB/EbfC family 3 89 9.8E-27 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Amico_0982 9c9db0a68d989bb2f781d8fa7dd982c0 102 Pfam PF02575 YbaB/EbfC DNA-binding family 7 95 1.6E-33 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Amico_0982 9c9db0a68d989bb2f781d8fa7dd982c0 102 PIRSF PIRSF004555 1 102 2.5E-34 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Amico_0982 9c9db0a68d989bb2f781d8fa7dd982c0 102 SUPERFAMILY SSF82607 3 93 8.24E-31 T 14-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily Amico_0982 9c9db0a68d989bb2f781d8fa7dd982c0 102 Hamap MF_00274 Nucleoid-associated protein YbaB [ybaB]. 1 95 21.91 T 14-10-2018 IPR004401 Nucleoid-associated protein YbaB/EbfC family Amico_0982 9c9db0a68d989bb2f781d8fa7dd982c0 102 Gene3D G3DSA:3.30.1310.10 3 102 6.3E-35 T 14-10-2018 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily Amico_1232 8b9a8ea649f8b1ac9a0e13411682e3da 152 SUPERFAMILY SSF51197 4 151 9.06E-41 T 14-10-2018 Amico_1232 8b9a8ea649f8b1ac9a0e13411682e3da 152 TIGRFAM TIGR00022 TIGR00022: YhcH/YjgK/YiaL family protein 4 151 2.6E-32 T 14-10-2018 IPR004375 YhcH/YjgK/YiaL family Amico_1232 8b9a8ea649f8b1ac9a0e13411682e3da 152 Gene3D G3DSA:2.60.120.370 3 151 4.3E-45 T 14-10-2018 IPR037012 YhcH/YjgK/YiaL superfamily Amico_1232 8b9a8ea649f8b1ac9a0e13411682e3da 152 Pfam PF04074 Domain of unknown function (DUF386) 4 150 1.5E-44 T 14-10-2018 IPR004375 YhcH/YjgK/YiaL family Amico_0056 74524ed524404c575c65e0649a9a7a5e 203 PIRSF PIRSF006578 2 201 2.0E-70 T 14-10-2018 IPR026328 Formylmethanofuran dehydrogenase, subunit E Amico_0056 74524ed524404c575c65e0649a9a7a5e 203 Gene3D G3DSA:3.30.1330.130 3 151 6.6E-43 T 14-10-2018 Amico_0056 74524ed524404c575c65e0649a9a7a5e 203 Pfam PF02663 FmdE, Molybdenum formylmethanofuran dehydrogenase operon 15 151 2.1E-43 T 14-10-2018 IPR003814 Formylmethanofuran dehydrogenase, subunit E domain Amico_0056 74524ed524404c575c65e0649a9a7a5e 203 SUPERFAMILY SSF143555 5 164 1.7E-48 T 14-10-2018 Amico_0486 58c7b438f113219cc18f4e6cb9267305 424 Gene3D G3DSA:1.20.1600.10 28 424 3.3E-90 T 14-10-2018 Amico_0486 58c7b438f113219cc18f4e6cb9267305 424 Pfam PF02321 Outer membrane efflux protein 239 420 1.2E-31 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Amico_0486 58c7b438f113219cc18f4e6cb9267305 424 Pfam PF02321 Outer membrane efflux protein 35 217 3.8E-31 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Amico_0486 58c7b438f113219cc18f4e6cb9267305 424 PIRSF PIRSF001892 16 423 1.5E-75 T 14-10-2018 IPR028351 Cyclolysin transport protein CyaE GO:0005215 Amico_0486 58c7b438f113219cc18f4e6cb9267305 424 SUPERFAMILY SSF56954 2 422 6.8E-89 T 14-10-2018 Amico_0038 ad86bfddbc4d0a9a40add7914156758c 537 Gene3D G3DSA:1.20.58.220 438 536 3.2E-16 T 14-10-2018 IPR038078 PhoU-like domain superfamily Amico_0038 ad86bfddbc4d0a9a40add7914156758c 537 Gene3D G3DSA:1.20.58.220 332 432 4.9E-16 T 14-10-2018 IPR038078 PhoU-like domain superfamily Amico_0038 ad86bfddbc4d0a9a40add7914156758c 537 SUPERFAMILY SSF109755 327 530 2.3E-42 T 14-10-2018 Amico_0038 ad86bfddbc4d0a9a40add7914156758c 537 TIGRFAM TIGR00704 NaPi_cotrn_rel: Na/Pi-cotransporter II-related protein 7 306 1.8E-71 T 14-10-2018 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein GO:0016020 Amico_0038 ad86bfddbc4d0a9a40add7914156758c 537 Pfam PF01895 PhoU domain 444 526 6.2E-12 T 14-10-2018 IPR026022 PhoU domain Amico_0038 ad86bfddbc4d0a9a40add7914156758c 537 Pfam PF01895 PhoU domain 338 423 2.4E-13 T 14-10-2018 IPR026022 PhoU domain Amico_0038 ad86bfddbc4d0a9a40add7914156758c 537 Pfam PF02690 Na+/Pi-cotransporter 160 254 1.4E-17 T 14-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Amico_0038 ad86bfddbc4d0a9a40add7914156758c 537 Pfam PF02690 Na+/Pi-cotransporter 15 150 2.0E-50 T 14-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Amico_1718 cb8869197a162e98de1efa119725763e 203 Gene3D G3DSA:3.40.50.20 1 83 9.7E-19 T 14-10-2018 Amico_1718 cb8869197a162e98de1efa119725763e 203 SUPERFAMILY SSF51161 2 202 2.08E-38 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Amico_1718 cb8869197a162e98de1efa119725763e 203 TIGRFAM TIGR03570 NeuD_NnaD: sugar O-acyltransferase, sialic acid O-acetyltransferase NeuD family 4 199 1.9E-62 T 14-10-2018 IPR020019 Sialic acid O-acyltransferase NeuD-like Amico_1718 cb8869197a162e98de1efa119725763e 203 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 114 149 1.0E-4 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_1718 cb8869197a162e98de1efa119725763e 203 Gene3D G3DSA:2.160.10.10 85 201 2.1E-26 T 14-10-2018 Amico_0039 ff833971a09d47c360e1c662b503ae23 323 Gene3D G3DSA:2.30.30.100 274 320 6.1E-10 T 14-10-2018 Amico_0039 ff833971a09d47c360e1c662b503ae23 323 SUPERFAMILY SSF50037 278 319 1.19E-5 T 14-10-2018 IPR008988 Transcriptional repressor, C-terminal Amico_0039 ff833971a09d47c360e1c662b503ae23 323 Gene3D G3DSA:1.10.10.10 1 61 6.2E-24 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0039 ff833971a09d47c360e1c662b503ae23 323 TIGRFAM TIGR00121 birA_ligase: biotin--[acetyl-CoA-carboxylase] ligase 82 318 2.9E-55 T 14-10-2018 IPR004408 Biotin--acetyl-CoA-carboxylase ligase GO:0004077|GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Amico_0039 ff833971a09d47c360e1c662b503ae23 323 Hamap MF_00978 Bifunctional ligase/repressor BirA [birA]. 4 320 34.711 T 14-10-2018 IPR030855 Bifunctional ligase/repressor BirA GO:0004077|GO:0006355 KEGG: 00780+6.3.4.15 Amico_0039 ff833971a09d47c360e1c662b503ae23 323 Pfam PF03099 Biotin/lipoate A/B protein ligase family 101 209 1.6E-12 T 14-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Amico_0039 ff833971a09d47c360e1c662b503ae23 323 Pfam PF08279 HTH domain 3 56 4.8E-18 T 14-10-2018 IPR013196 Helix-turn-helix, type 11 Amico_0039 ff833971a09d47c360e1c662b503ae23 323 Pfam PF02237 Biotin protein ligase C terminal domain 274 317 1.5E-5 T 14-10-2018 IPR003142 Biotin protein ligase, C-terminal GO:0006464 KEGG: 00780+6.3.4.15|Reactome: R-HSA-196780|Reactome: R-HSA-3371599 Amico_0039 ff833971a09d47c360e1c662b503ae23 323 SUPERFAMILY SSF55681 69 259 1.24E-57 T 14-10-2018 Amico_0039 ff833971a09d47c360e1c662b503ae23 323 Gene3D G3DSA:3.30.930.10 65 264 4.1E-60 T 14-10-2018 Amico_0039 ff833971a09d47c360e1c662b503ae23 323 SUPERFAMILY SSF46785 5 57 3.63E-12 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0845 4659403ce338b1af50edaf2fd42d058e 108 SUPERFAMILY SSF118010 1 106 1.24E-23 T 14-10-2018 IPR036764 Cysteine protease Prp superfamily Amico_0845 4659403ce338b1af50edaf2fd42d058e 108 Pfam PF04327 Cysteine protease Prp 1 102 4.1E-23 T 14-10-2018 IPR007422 Cysteine protease Prp Amico_0845 4659403ce338b1af50edaf2fd42d058e 108 Gene3D G3DSA:3.30.70.1490 1 105 4.0E-24 T 14-10-2018 IPR036764 Cysteine protease Prp superfamily Amico_1036 b1034d13b6ddfc1873439f5e14835126 181 Pfam PF03780 Asp23 family, cell envelope-related function 36 142 2.3E-21 T 14-10-2018 IPR005531 Alkaline shock protein Asp23 Amico_1094 a1429bf41db56fb5f381eaa96bb2ff36 258 Pfam PF01784 NIF3 (NGG1p interacting factor 3) 5 236 1.5E-65 T 14-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Amico_1094 a1429bf41db56fb5f381eaa96bb2ff36 258 TIGRFAM TIGR00486 YbgI_SA1388: dinuclear metal center protein, YbgI/SA1388 family 3 238 5.1E-50 T 14-10-2018 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 Amico_1094 a1429bf41db56fb5f381eaa96bb2ff36 258 Gene3D G3DSA:3.40.1390.30 6 231 6.6E-64 T 14-10-2018 Amico_1094 a1429bf41db56fb5f381eaa96bb2ff36 258 SUPERFAMILY SSF102705 1 237 2.88E-69 T 14-10-2018 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily Amico_1094 a1429bf41db56fb5f381eaa96bb2ff36 258 Gene3D G3DSA:3.40.1390.30 100 221 6.6E-64 T 14-10-2018 Amico_1081 6e170daeb2d753871b173b74afd80e85 604 Gene3D G3DSA:1.10.8.630 2 110 7.6E-15 T 14-10-2018 Amico_1081 6e170daeb2d753871b173b74afd80e85 604 SUPERFAMILY SSF52540 145 240 9.0E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1081 6e170daeb2d753871b173b74afd80e85 604 Gene3D G3DSA:3.40.50.300 138 277 1.1E-16 T 14-10-2018 Amico_1221 b0fe02a97e8685b6f850e43b6017043f 366 TIGRFAM TIGR00254 GGDEF: diguanylate cyclase (GGDEF) domain 206 365 5.5E-46 T 14-10-2018 IPR000160 GGDEF domain Amico_1221 b0fe02a97e8685b6f850e43b6017043f 366 SUPERFAMILY SSF55073 214 365 1.73E-42 T 14-10-2018 IPR029787 Nucleotide cyclase Amico_1221 b0fe02a97e8685b6f850e43b6017043f 366 Gene3D G3DSA:3.30.70.270 196 365 8.9E-48 T 14-10-2018 Amico_1221 b0fe02a97e8685b6f850e43b6017043f 366 SMART SM00267 198 366 1.8E-47 T 14-10-2018 IPR000160 GGDEF domain Amico_1221 b0fe02a97e8685b6f850e43b6017043f 366 Pfam PF00990 Diguanylate cyclase, GGDEF domain 210 362 4.0E-40 T 14-10-2018 IPR000160 GGDEF domain Amico_1199 5a95c29eeab1312e997a8e78dcedeee1 447 SUPERFAMILY SSF52540 79 378 1.84E-62 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1199 5a95c29eeab1312e997a8e78dcedeee1 447 Pfam PF00437 Type II/IV secretion system protein 96 371 1.9E-82 T 14-10-2018 IPR001482 Type II/IV secretion system protein Amico_1199 5a95c29eeab1312e997a8e78dcedeee1 447 Gene3D G3DSA:3.30.450.380 18 190 7.7E-44 T 14-10-2018 Amico_1199 5a95c29eeab1312e997a8e78dcedeee1 447 Gene3D G3DSA:3.40.50.300 191 415 8.8E-74 T 14-10-2018 Amico_0860 02cb3cd2d99561c1d06ad5c972dd3f61 435 SUPERFAMILY SSF143447 260 433 8.63E-46 T 14-10-2018 IPR036071 AMMECR1 domain superfamily Amico_0860 02cb3cd2d99561c1d06ad5c972dd3f61 435 Gene3D G3DSA:3.40.830.10 3 256 1.8E-53 T 14-10-2018 Amico_0860 02cb3cd2d99561c1d06ad5c972dd3f61 435 Pfam PF01871 AMMECR1 265 430 8.4E-43 T 14-10-2018 IPR002733 AMMECR1 domain Amico_0860 02cb3cd2d99561c1d06ad5c972dd3f61 435 Gene3D G3DSA:3.30.1490.150 364 426 1.5E-41 T 14-10-2018 Amico_0860 02cb3cd2d99561c1d06ad5c972dd3f61 435 Gene3D G3DSA:3.30.700.20 264 433 1.5E-41 T 14-10-2018 IPR027485 AMMECR1, N-terminal Amico_0860 02cb3cd2d99561c1d06ad5c972dd3f61 435 SUPERFAMILY SSF53213 4 253 3.27E-25 T 14-10-2018 Amico_0860 02cb3cd2d99561c1d06ad5c972dd3f61 435 TIGRFAM TIGR04335 AmmeMemoSam_A: AmmeMemoRadiSam system protein A 264 430 1.6E-42 T 14-10-2018 IPR027623 AmmeMemoRadiSam system protein A Amico_0860 02cb3cd2d99561c1d06ad5c972dd3f61 435 Pfam PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase 6 253 3.5E-23 T 14-10-2018 IPR004183 Extradiol ring-cleavage dioxygenase, class III enzyme, subunit B GO:0006725|GO:0008198|GO:0016491 Amico_0860 02cb3cd2d99561c1d06ad5c972dd3f61 435 TIGRFAM TIGR00296 TIGR00296: uncharacterized protein, PH0010 family 265 432 1.8E-28 T 14-10-2018 IPR023473 AMMECR1 Amico_1125 59859726e9085e0a9eeb4e35420ad143 202 SUPERFAMILY SSF56349 6 195 2.27E-34 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Amico_1125 59859726e9085e0a9eeb4e35420ad143 202 Pfam PF00589 Phage integrase family 10 184 3.9E-22 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Amico_1125 59859726e9085e0a9eeb4e35420ad143 202 Gene3D G3DSA:1.10.443.10 3 199 6.0E-28 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Amico_0731 b8ba903b42a4e952db09eaa0b2cdbf52 554 TIGRFAM TIGR02397 dnaX_nterm: DNA polymerase III, subunit gamma and tau 4 348 2.9E-120 T 14-10-2018 IPR012763 DNA polymerase III, subunit gamma/ tau GO:0003887|GO:0005524|GO:0006260|GO:0009360 Amico_0731 b8ba903b42a4e952db09eaa0b2cdbf52 554 SMART SM00382 36 179 1.2E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0731 b8ba903b42a4e952db09eaa0b2cdbf52 554 Gene3D G3DSA:3.40.50.300 12 177 3.8E-98 T 14-10-2018 Amico_0731 b8ba903b42a4e952db09eaa0b2cdbf52 554 Pfam PF13177 DNA polymerase III, delta subunit 20 178 8.5E-45 T 14-10-2018 Amico_0731 b8ba903b42a4e952db09eaa0b2cdbf52 554 Gene3D G3DSA:1.10.8.60 7 238 3.8E-98 T 14-10-2018 Amico_0731 b8ba903b42a4e952db09eaa0b2cdbf52 554 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 40 58 3.4E-6 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Amico_0731 b8ba903b42a4e952db09eaa0b2cdbf52 554 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 124 142 3.4E-6 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Amico_0731 b8ba903b42a4e952db09eaa0b2cdbf52 554 SUPERFAMILY SSF52540 33 226 5.03E-57 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0724 d6f2e7fce3ce2caad07ee2e5b6eec5d9 314 Pfam PF07136 Protein of unknown function (DUF1385) 68 297 4.4E-78 T 14-10-2018 IPR010787 Protein of unknown function DUF1385 Amico_0724 d6f2e7fce3ce2caad07ee2e5b6eec5d9 314 ProDom PD131510 MEMBRANE METAL-DEPENDENT ENZYME YQHQ SPANNING SIMILAR LIPOPROTEIN LIPOPROTEIN PROTEIN HYP001 68 281 3.0E-40 T 14-10-2018 IPR010787 Protein of unknown function DUF1385 Amico_0334 3aedfdef3a3ded38d0bfb194c7b97175 379 SUPERFAMILY SSF53807 82 360 1.18E-33 T 14-10-2018 Amico_0334 3aedfdef3a3ded38d0bfb194c7b97175 379 Gene3D G3DSA:3.40.50.1980 81 373 1.2E-26 T 14-10-2018 Amico_0334 3aedfdef3a3ded38d0bfb194c7b97175 379 Pfam PF01497 Periplasmic binding protein 105 293 1.6E-18 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain Amico_1450 640e234fab023744b76d2d53514ac04d 581 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 219 452 1.6E-58 T 14-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Amico_1450 640e234fab023744b76d2d53514ac04d 581 SUPERFAMILY SSF52518 207 459 7.07E-65 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1450 640e234fab023744b76d2d53514ac04d 581 Gene3D G3DSA:3.40.920.10 9 187 1.5E-22 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_1450 640e234fab023744b76d2d53514ac04d 581 TIGRFAM TIGR03710 OAFO_sf: 2-oxoacid:acceptor oxidoreductase, alpha subunit 12 569 1.6E-185 T 14-10-2018 IPR022367 2-oxoacid:acceptor oxidoreductase, alpha subunit KEGG: 00020+1.2.7.3|KEGG: 00720+1.2.7.3|MetaCyc: PWY-5392|MetaCyc: PWY-6969 Amico_1450 640e234fab023744b76d2d53514ac04d 581 SUPERFAMILY SSF53323 13 230 8.24E-32 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_1450 640e234fab023744b76d2d53514ac04d 581 Gene3D G3DSA:3.40.50.970 198 393 1.5E-71 T 14-10-2018 Amico_1450 640e234fab023744b76d2d53514ac04d 581 Gene3D G3DSA:3.40.50.920 464 574 2.6E-18 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1450 640e234fab023744b76d2d53514ac04d 581 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 21 183 6.0E-27 T 14-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Amico_1450 640e234fab023744b76d2d53514ac04d 581 SUPERFAMILY SSF52922 471 568 3.66E-8 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_0016 eb3baf31519155374c61c23baf52af38 292 Pfam PF13237 4Fe-4S dicluster domain 65 111 2.2E-6 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_0016 eb3baf31519155374c61c23baf52af38 292 SUPERFAMILY SSF52540 3 271 2.86E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0016 eb3baf31519155374c61c23baf52af38 292 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 100 111 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_0016 eb3baf31519155374c61c23baf52af38 292 SUPERFAMILY SSF54862 58 124 3.96E-19 T 14-10-2018 Amico_0016 eb3baf31519155374c61c23baf52af38 292 Gene3D G3DSA:3.30.70.20 71 115 3.7E-10 T 14-10-2018 Amico_0016 eb3baf31519155374c61c23baf52af38 292 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 6 268 9.2E-18 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Amico_1251 6dbfa709e3319803dcf777f4955f44f6 258 SMART SM00062 33 258 4.9E-60 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_1251 6dbfa709e3319803dcf777f4955f44f6 258 SUPERFAMILY SSF53850 7 255 3.16E-62 T 14-10-2018 Amico_1251 6dbfa709e3319803dcf777f4955f44f6 258 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 34 255 3.6E-58 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_1251 6dbfa709e3319803dcf777f4955f44f6 258 Gene3D G3DSA:3.40.190.10 33 248 9.7E-66 T 14-10-2018 Amico_1251 6dbfa709e3319803dcf777f4955f44f6 258 Gene3D G3DSA:3.40.190.10 121 217 9.7E-66 T 14-10-2018 Amico_1251 6dbfa709e3319803dcf777f4955f44f6 258 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 56 69 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site Amico_1359 6aef6278071333bd503b50ac26e96305 327 Gene3D G3DSA:3.90.25.10 184 306 8.8E-75 T 14-10-2018 Amico_1359 6aef6278071333bd503b50ac26e96305 327 Pfam PF16363 GDP-mannose 4,6 dehydratase 6 309 1.9E-59 T 14-10-2018 IPR016040 NAD(P)-binding domain Amico_1359 6aef6278071333bd503b50ac26e96305 327 SUPERFAMILY SSF51735 3 316 1.59E-67 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1359 6aef6278071333bd503b50ac26e96305 327 Gene3D G3DSA:3.40.50.720 5 299 8.8E-75 T 14-10-2018 Amico_1361 9cfa421625a7463b439e3cad64c27e85 190 Hamap MF_00067 Phosphoheptose isomerase [gmhA]. 1 186 34.756 T 14-10-2018 IPR004515 Phosphoheptose isomerase GO:0005737|GO:0008968 KEGG: 00540+5.3.1.28|MetaCyc: PWY-6478 Amico_1361 9cfa421625a7463b439e3cad64c27e85 190 SUPERFAMILY SSF53697 1 185 8.7E-51 T 14-10-2018 Amico_1361 9cfa421625a7463b439e3cad64c27e85 190 Pfam PF13580 SIS domain 21 143 4.0E-29 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Amico_1361 9cfa421625a7463b439e3cad64c27e85 190 Gene3D G3DSA:3.40.50.10490 1 186 4.8E-71 T 14-10-2018 Amico_1438 13ced5a032057731dfe5bb56987e33ac 434 Gene3D G3DSA:3.80.30.20 150 382 1.6E-76 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Amico_1438 13ced5a032057731dfe5bb56987e33ac 434 Gene3D G3DSA:3.40.50.12160 8 136 5.2E-15 T 14-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Amico_1438 13ced5a032057731dfe5bb56987e33ac 434 SUPERFAMILY SSF102114 150 372 7.32E-51 T 14-10-2018 Amico_1438 13ced5a032057731dfe5bb56987e33ac 434 Pfam PF04055 Radical SAM superfamily 156 325 2.4E-23 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_1438 13ced5a032057731dfe5bb56987e33ac 434 TIGRFAM TIGR01579 MiaB-like-C: MiaB-like tRNA modifying enzyme 12 412 1.7E-114 T 14-10-2018 IPR006467 MiaB-like tRNA modifying enzyme GO:0016740 Amico_1438 13ced5a032057731dfe5bb56987e33ac 434 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 9 434 1.9E-107 T 14-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Amico_1438 13ced5a032057731dfe5bb56987e33ac 434 SMART SM00729 151 369 7.2E-48 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Amico_1438 13ced5a032057731dfe5bb56987e33ac 434 Pfam PF00919 Uncharacterized protein family UPF0004 9 103 4.1E-17 T 14-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Amico_1438 13ced5a032057731dfe5bb56987e33ac 434 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 155 175 - T 14-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Amico_1663 189541792ebe8bbc69d4cf2df8291daf 364 Pfam PF02615 Malate/L-lactate dehydrogenase 8 349 4.4E-111 T 14-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 Amico_1663 189541792ebe8bbc69d4cf2df8291daf 364 Gene3D G3DSA:1.10.1530.10 15 353 2.2E-113 T 14-10-2018 Amico_1663 189541792ebe8bbc69d4cf2df8291daf 364 SUPERFAMILY SSF89733 6 357 3.27E-97 T 14-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 Amico_1663 189541792ebe8bbc69d4cf2df8291daf 364 Gene3D G3DSA:3.30.1370.60 72 332 2.2E-113 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 Hamap MF_00344 GMP synthase [glutamine-hydrolyzing] [guaA]. 1 510 52.112 T 14-10-2018 IPR022955 GMP synthase GO:0003922|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 Gene3D G3DSA:3.30.300.10 391 510 1.7E-50 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 Pfam PF00117 Glutamine amidotransferase class-I 6 187 1.4E-38 T 14-10-2018 IPR017926 Glutamine amidotransferase Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 Pfam PF02540 NAD synthase 204 277 1.2E-7 T 14-10-2018 IPR022310 NAD/GMP synthase Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 PRINTS PR00097 Anthranilate synthase component II signature 75 86 5.5E-8 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 PRINTS PR00097 Anthranilate synthase component II signature 48 57 5.5E-8 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 PRINTS PR00097 Anthranilate synthase component II signature 164 177 5.5E-8 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 PRINTS PR00097 Anthranilate synthase component II signature 4 18 5.5E-8 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 TIGRFAM TIGR00884 guaA_Cterm: GMP synthase (glutamine-hydrolyzing), C-terminal domain 201 510 6.2E-144 T 14-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 SUPERFAMILY SSF54810 390 510 1.96E-46 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 SUPERFAMILY SSF52402 180 431 1.76E-53 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 TIGRFAM TIGR00888 guaA_Nterm: GMP synthase (glutamine-hydrolyzing), N-terminal domain 4 191 3.2E-69 T 14-10-2018 IPR004739 GMP synthase, glutamine amidotransferase GO:0003922|GO:0005524|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 PRINTS PR00096 Glutamine amidotransferase superfamily signature 75 86 1.0E-7 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 PRINTS PR00096 Glutamine amidotransferase superfamily signature 48 57 1.0E-7 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 PRINTS PR00096 Glutamine amidotransferase superfamily signature 164 177 1.0E-7 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 Pfam PF00958 GMP synthase C terminal domain 418 509 1.4E-40 T 14-10-2018 IPR001674 GMP synthase, C-terminal GO:0003922|GO:0005524|GO:0006164|GO:0006177 KEGG: 00230+6.3.5.2|KEGG: 00983+6.3.5.2|MetaCyc: PWY-7221|Reactome: R-HSA-73817 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 SUPERFAMILY SSF52317 3 196 1.24E-53 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 45 59 9.3E-6 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 75 91 9.3E-6 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 PRINTS PR00099 Carbamoyl-phosphate synthase protein GATase domain signature 4 18 9.3E-6 T 14-10-2018 Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 Gene3D G3DSA:3.40.50.880 1 197 6.3E-55 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Amico_0583 e3005ba7aeee178284d40c66dbddbc1f 510 Gene3D G3DSA:3.40.50.620 198 390 7.3E-75 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1309 415bdc2663ed32c733053a73134fe739 323 ProSitePatterns PS00671 D-isomer specific 2-hydroxyacid dehydrogenases signature 3. 228 244 - T 14-10-2018 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site Amico_1309 415bdc2663ed32c733053a73134fe739 323 SUPERFAMILY SSF52283 6 136 3.02E-28 T 14-10-2018 Amico_1309 415bdc2663ed32c733053a73134fe739 323 Pfam PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain 21 321 2.0E-28 T 14-10-2018 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO:0016616|GO:0051287|GO:0055114 Amico_1309 415bdc2663ed32c733053a73134fe739 323 Gene3D G3DSA:3.40.50.720 37 316 3.2E-107 T 14-10-2018 Amico_1309 415bdc2663ed32c733053a73134fe739 323 Gene3D G3DSA:3.40.50.720 104 290 3.2E-107 T 14-10-2018 Amico_1309 415bdc2663ed32c733053a73134fe739 323 SUPERFAMILY SSF51735 106 289 2.51E-55 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1309 415bdc2663ed32c733053a73134fe739 323 Pfam PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain 112 289 1.6E-58 T 14-10-2018 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain GO:0051287|GO:0055114 Amico_1349 384c96325165bb37a8f67533bd823812 236 SMART SM00382 34 224 9.7E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1349 384c96325165bb37a8f67533bd823812 236 SUPERFAMILY SSF52540 6 231 1.18E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1349 384c96325165bb37a8f67533bd823812 236 Pfam PF00005 ABC transporter 25 176 1.0E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1349 384c96325165bb37a8f67533bd823812 236 ProSitePatterns PS00211 ABC transporters family signature. 148 162 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1349 384c96325165bb37a8f67533bd823812 236 Gene3D G3DSA:3.40.50.300 4 236 4.4E-61 T 14-10-2018 Amico_1314 6f3036126d336705642855bb1d79e74d 108 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 84 95 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1314 6f3036126d336705642855bb1d79e74d 108 SUPERFAMILY SSF54862 38 105 3.83E-20 T 14-10-2018 Amico_1314 6f3036126d336705642855bb1d79e74d 108 Pfam PF14697 4Fe-4S dicluster domain 49 101 2.3E-10 T 14-10-2018 Amico_1314 6f3036126d336705642855bb1d79e74d 108 Gene3D G3DSA:3.30.70.20 26 108 7.5E-16 T 14-10-2018 Amico_1314 6f3036126d336705642855bb1d79e74d 108 TIGRFAM TIGR02179 PorD_KorD: 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family 31 104 8.5E-31 T 14-10-2018 IPR011898 2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0051539 Amico_0028 374dca07229e28df7f9da1c3b3443b9f 290 ProSitePatterns PS00895 3-hydroxyisobutyrate dehydrogenase signature. 6 19 - T 14-10-2018 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site GO:0016491|GO:0055114 Reactome: R-HSA-70895 Amico_0028 374dca07229e28df7f9da1c3b3443b9f 290 PIRSF PIRSF000103 1 290 7.1E-75 T 14-10-2018 IPR015815 3-hydroxyisobutyrate dehydrogenase-related GO:0016491|GO:0055114 Reactome: R-HSA-70895 Amico_0028 374dca07229e28df7f9da1c3b3443b9f 290 Pfam PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase 165 285 8.4E-33 T 14-10-2018 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain GO:0051287 Amico_0028 374dca07229e28df7f9da1c3b3443b9f 290 Pfam PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase 3 160 4.7E-52 T 14-10-2018 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding GO:0050661 Amico_0028 374dca07229e28df7f9da1c3b3443b9f 290 SUPERFAMILY SSF51735 2 163 1.12E-49 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0028 374dca07229e28df7f9da1c3b3443b9f 290 SUPERFAMILY SSF48179 163 286 3.29E-38 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Amico_0028 374dca07229e28df7f9da1c3b3443b9f 290 Gene3D G3DSA:1.10.1040.10 164 290 4.1E-38 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Amico_0028 374dca07229e28df7f9da1c3b3443b9f 290 Gene3D G3DSA:3.40.50.720 1 163 1.7E-53 T 14-10-2018 Amico_0862 271307c40ec25eb191483c50a8024239 476 TIGRFAM TIGR02669 SpoIID_LytB: SpoIID/LytB domain 122 474 5.8E-74 T 14-10-2018 IPR013486 Sporulation stage II protein D, amidase enhancer LytB GO:0030435 Amico_0862 271307c40ec25eb191483c50a8024239 476 Pfam PF08486 Stage II sporulation protein 118 207 2.0E-26 T 14-10-2018 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal Amico_0862 271307c40ec25eb191483c50a8024239 476 ProDom PD191273 TC0311 EXPORTED CT041 CPN0389/CP0366/CPJ0389/CPB0400 102 160 2.0E-4 T 14-10-2018 Amico_0561 204f358e1b3e2bb14045abf845da03a2 200 SMART SM01207 8 190 9.1E-71 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Amico_0561 204f358e1b3e2bb14045abf845da03a2 200 Hamap MF_01043 Glycerol-3-phosphate acyltransferase [plsY]. 5 198 18.491 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Amico_0561 204f358e1b3e2bb14045abf845da03a2 200 Pfam PF02660 Glycerol-3-phosphate acyltransferase 9 189 7.5E-50 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Amico_0561 204f358e1b3e2bb14045abf845da03a2 200 TIGRFAM TIGR00023 TIGR00023: acyl-phosphate glycerol 3-phosphate acyltransferase 4 199 2.1E-50 T 14-10-2018 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY GO:0005886|GO:0008654|GO:0043772 Amico_1040 fee5ae64b50907fcea647aa36c25a9a1 103 Gene3D G3DSA:1.10.1270.10 1 103 1.6E-34 T 14-10-2018 IPR038116 TrpR-like superfamily Amico_1040 fee5ae64b50907fcea647aa36c25a9a1 103 SUPERFAMILY SSF48295 2 93 9.42E-28 T 14-10-2018 IPR010921 Trp repressor/replication initiator GO:0043565 Amico_1040 fee5ae64b50907fcea647aa36c25a9a1 103 PIRSF PIRSF012508 1 99 9.5E-42 T 14-10-2018 IPR013368 TrpR homologue YerC/YecD Amico_1040 fee5ae64b50907fcea647aa36c25a9a1 103 Pfam PF01371 Trp repressor protein 11 92 8.5E-27 T 14-10-2018 IPR000831 Trp repressor GO:0003700|GO:0005622|GO:0006355 Amico_1040 fee5ae64b50907fcea647aa36c25a9a1 103 TIGRFAM TIGR02531 yecD_yerC: TrpR homolog YerC/YecD 6 91 1.3E-36 T 14-10-2018 IPR013368 TrpR homologue YerC/YecD Amico_0997 ac0c14ddc869ffcd643cda30e8ac4f92 161 TIGRFAM TIGR00114 lumazine-synth: 6,7-dimethyl-8-ribityllumazine synthase 13 149 6.0E-49 T 14-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Amico_0997 ac0c14ddc869ffcd643cda30e8ac4f92 161 SUPERFAMILY SSF52121 4 155 1.1E-55 T 14-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Amico_0997 ac0c14ddc869ffcd643cda30e8ac4f92 161 Hamap MF_00178 6,7-dimethyl-8-ribityllumazine synthase [ribH]. 8 153 28.714 T 14-10-2018 IPR034964 Lumazine synthase GO:0000906|GO:0009231 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Amico_0997 ac0c14ddc869ffcd643cda30e8ac4f92 161 Gene3D G3DSA:3.40.50.960 1 153 2.1E-58 T 14-10-2018 IPR036467 Lumazine/riboflavin synthase superfamily GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Amico_0997 ac0c14ddc869ffcd643cda30e8ac4f92 161 Pfam PF00885 6,7-dimethyl-8-ribityllumazine synthase 12 150 3.2E-53 T 14-10-2018 IPR002180 Lumazine/riboflavin synthase GO:0009231|GO:0009349 KEGG: 00740+2.5.1.78|MetaCyc: PWY-6167|MetaCyc: PWY-6168 Amico_0787 9f778b0f68254240ca2c2821019b2861 319 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 232 297 9.4E-17 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Amico_0787 9f778b0f68254240ca2c2821019b2861 319 SMART SM00382 35 230 2.8E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0787 9f778b0f68254240ca2c2821019b2861 319 SUPERFAMILY SSF52540 6 252 2.78E-75 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0787 9f778b0f68254240ca2c2821019b2861 319 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 230 317 1.1E-26 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Amico_0787 9f778b0f68254240ca2c2821019b2861 319 Gene3D G3DSA:3.40.50.300 4 319 1.1E-96 T 14-10-2018 Amico_0787 9f778b0f68254240ca2c2821019b2861 319 Pfam PF00005 ABC transporter 27 180 4.3E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0095 d6a40ce9c646c81ca92b8ebe6b28db8b 338 Gene3D G3DSA:3.20.20.70 6 296 6.6E-47 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0095 d6a40ce9c646c81ca92b8ebe6b28db8b 338 SUPERFAMILY SSF51395 4 306 5.66E-44 T 14-10-2018 Amico_0095 d6a40ce9c646c81ca92b8ebe6b28db8b 338 Pfam PF01180 Dihydroorotate dehydrogenase 92 290 4.1E-9 T 14-10-2018 IPR005720 Dihydroorotate dehydrogenase domain GO:0005737|GO:0016627|GO:0055114 Amico_0095 d6a40ce9c646c81ca92b8ebe6b28db8b 338 PIRSF PIRSF000164 2 307 2.2E-29 T 14-10-2018 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 GO:0004152|GO:0006222|GO:0055114 Amico_1076 391cb6347e757a29a1b9846ebb8e87ca 317 TIGRFAM TIGR00091 TIGR00091: tRNA (guanine-N(7)-)-methyltransferase 33 199 1.8E-41 T 14-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Amico_1076 391cb6347e757a29a1b9846ebb8e87ca 317 Pfam PF02390 Putative methyltransferase 32 193 5.4E-42 T 14-10-2018 Amico_1076 391cb6347e757a29a1b9846ebb8e87ca 317 Hamap MF_01057 tRNA (guanine-N(7)-)-methyltransferase [trmB]. 1 200 24.652 T 14-10-2018 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type GO:0006400|GO:0008176 Reactome: R-HSA-6782315 Amico_1076 391cb6347e757a29a1b9846ebb8e87ca 317 SUPERFAMILY SSF53335 18 196 1.38E-27 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_1076 391cb6347e757a29a1b9846ebb8e87ca 317 Gene3D G3DSA:3.40.50.150 21 206 1.2E-47 T 14-10-2018 Amico_0732 7bca5187c5abfbe78482f8de10a3acad 1144 TIGRFAM TIGR00594 polc: DNA polymerase III, alpha subunit 6 1021 0.0 T 14-10-2018 IPR004805 DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_0732 7bca5187c5abfbe78482f8de10a3acad 1144 SUPERFAMILY SSF89550 6 255 6.28E-36 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Amico_0732 7bca5187c5abfbe78482f8de10a3acad 1144 SMART SM00481 7 74 1.5E-29 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Amico_0732 7bca5187c5abfbe78482f8de10a3acad 1144 Pfam PF14579 Helix-hairpin-helix motif 799 888 1.0E-24 T 14-10-2018 IPR029460 DNA polymerase, helix-hairpin-helix motif KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_0732 7bca5187c5abfbe78482f8de10a3acad 1144 Gene3D G3DSA:3.20.20.140 2 275 2.2E-109 T 14-10-2018 Amico_0732 7bca5187c5abfbe78482f8de10a3acad 1144 Pfam PF07733 Bacterial DNA polymerase III alpha subunit 300 724 7.9E-176 T 14-10-2018 IPR011708 Bacterial DNA polymerase III, alpha subunit GO:0006260|GO:0008408 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7 Amico_0732 7bca5187c5abfbe78482f8de10a3acad 1144 Gene3D G3DSA:1.10.10.1600 434 510 2.5E-21 T 14-10-2018 Amico_0732 7bca5187c5abfbe78482f8de10a3acad 1144 Pfam PF02811 PHP domain 8 176 3.0E-51 T 14-10-2018 IPR004013 PHP domain GO:0003824 Amico_0803 4d89dd633ff51df4f52aaeab9cc5ec23 158 SUPERFAMILY SSF81333 6 72 1.2E-11 T 14-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily Amico_0803 4d89dd633ff51df4f52aaeab9cc5ec23 158 SUPERFAMILY SSF81333 85 154 7.06E-11 T 14-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily Amico_0803 4d89dd633ff51df4f52aaeab9cc5ec23 158 Gene3D G3DSA:1.20.120.610 1 155 1.7E-45 T 14-10-2018 Amico_0803 4d89dd633ff51df4f52aaeab9cc5ec23 158 Pfam PF00137 ATP synthase subunit C 11 69 1.7E-14 T 14-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Amico_0803 4d89dd633ff51df4f52aaeab9cc5ec23 158 Pfam PF00137 ATP synthase subunit C 94 152 5.5E-13 T 14-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Amico_1709 1445f31dbd9d5fe4e57674661e22b3ef 461 Pfam PF07287 Acyclic terpene utilisation family protein AtuA 96 338 8.4E-16 T 14-10-2018 IPR010839 Acyclic terpene utilisation Amico_1231 994b6ea047e102a35973ebb2de8c1b75 523 SUPERFAMILY SSF56317 2 251 2.35E-52 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Amico_1231 994b6ea047e102a35973ebb2de8c1b75 523 SUPERFAMILY SSF56317 301 476 7.46E-18 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Amico_1231 994b6ea047e102a35973ebb2de8c1b75 523 Gene3D G3DSA:3.60.110.10 1 266 3.8E-53 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Amico_1231 994b6ea047e102a35973ebb2de8c1b75 523 Pfam PF00795 Carbon-nitrogen hydrolase 4 251 8.4E-39 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Amico_1231 994b6ea047e102a35973ebb2de8c1b75 523 Pfam PF00795 Carbon-nitrogen hydrolase 389 473 2.7E-8 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Amico_1231 994b6ea047e102a35973ebb2de8c1b75 523 Gene3D G3DSA:3.60.110.10 292 513 5.2E-15 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Amico_0072 a65418258281bcd885e78889894c8344 373 Gene3D G3DSA:3.40.50.1100 96 190 1.0E-103 T 14-10-2018 Amico_0072 a65418258281bcd885e78889894c8344 373 Gene3D G3DSA:3.40.50.1100 50 365 1.0E-103 T 14-10-2018 Amico_0072 a65418258281bcd885e78889894c8344 373 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 65 360 2.8E-71 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Amico_0072 a65418258281bcd885e78889894c8344 373 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 88 101 - T 14-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Amico_0072 a65418258281bcd885e78889894c8344 373 SUPERFAMILY SSF53686 2 369 8.38E-88 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 Gene3D G3DSA:3.30.310.50 368 454 1.2E-25 T 14-10-2018 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 Pfam PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III 257 362 3.6E-16 T 14-10-2018 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 169 188 3.3E-25 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 232 247 3.3E-25 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 95 109 3.3E-25 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 PRINTS PR00509 Phosphoglucomutase/phosphomannomutase family signature 203 216 3.3E-25 T 14-10-2018 IPR005841 Alpha-D-phosphohexomutase superfamily GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 Pfam PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain 372 443 2.7E-10 T 14-10-2018 IPR005843 Alpha-D-phosphohexomutase, C-terminal GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 Gene3D G3DSA:3.40.120.10 250 366 9.2E-34 T 14-10-2018 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 ProSitePatterns PS00710 Phosphoglucomutase and phosphomannomutase phosphoserine signature. 96 105 - T 14-10-2018 IPR016066 Alpha-D-phosphohexomutase, conserved site GO:0000287 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 Gene3D G3DSA:3.40.120.10 171 248 1.0E-33 T 14-10-2018 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 SUPERFAMILY SSF53738 5 176 6.28E-34 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 Pfam PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II 153 252 4.3E-31 T 14-10-2018 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II GO:0005975 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 Pfam PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I 7 137 1.1E-27 T 14-10-2018 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 SUPERFAMILY SSF53738 151 254 2.83E-33 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 SUPERFAMILY SSF55957 367 448 3.01E-20 T 14-10-2018 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily GO:0016868|GO:0071704 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 Gene3D G3DSA:3.40.120.10 1 149 2.1E-45 T 14-10-2018 Amico_0419 4cdf2b1a2fb10571c1e6a55fcc59011b 461 SUPERFAMILY SSF53738 256 361 2.79E-27 T 14-10-2018 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III GO:0005975|GO:0016868 KEGG: 00520+5.4.2.10|MetaCyc: PWY-6749 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 Gene3D G3DSA:1.10.8.60 725 828 4.0E-29 T 14-10-2018 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 Pfam PF02151 UvrB/uvrC motif 428 459 3.5E-7 T 14-10-2018 IPR001943 UVR domain GO:0005515 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 Gene3D G3DSA:3.40.50.300 497 723 8.3E-85 T 14-10-2018 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 Gene3D G3DSA:1.10.1780.10 1 150 2.7E-48 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 623 641 9.0E-41 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 656 670 9.0E-41 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 594 612 9.0E-41 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 PRINTS PR00300 ATP-dependent Clp protease ATP-binding subunit signature 549 567 9.0E-41 T 14-10-2018 IPR001270 ClpA/B family GO:0005524 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 SUPERFAMILY SSF52540 169 510 2.08E-75 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 SUPERFAMILY SSF81923 5 148 5.76E-28 T 14-10-2018 IPR036628 Clp, N-terminal domain superfamily GO:0019538 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 16 68 3.7E-16 T 14-10-2018 IPR004176 Clp, N-terminal Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 Pfam PF02861 Clp amino terminal domain, pathogenicity island component 93 143 6.3E-13 T 14-10-2018 IPR004176 Clp, N-terminal Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 Gene3D G3DSA:4.10.860.10 417 475 1.0E-46 T 14-10-2018 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 Gene3D G3DSA:3.40.50.300 160 351 5.4E-72 T 14-10-2018 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 SMART SM01086 725 814 4.7E-33 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 Pfam PF07724 AAA domain (Cdc48 subfamily) 544 718 4.3E-52 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 Pfam PF10431 C-terminal, D2-small domain, of ClpB protein 725 804 1.8E-25 T 14-10-2018 IPR019489 Clp ATPase, C-terminal Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 Gene3D G3DSA:1.10.8.60 354 489 1.0E-46 T 14-10-2018 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 SUPERFAMILY SSF52540 494 809 2.23E-78 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 Pfam PF00004 ATPase family associated with various cellular activities (AAA) 213 329 1.7E-15 T 14-10-2018 IPR003959 ATPase, AAA-type, core GO:0005524 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 ProSitePatterns PS00870 Chaperonins clpA/B signature 1. 303 315 - T 14-10-2018 IPR018368 ClpA/B, conserved site 1 GO:0005524 Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 SMART SM00382 208 352 1.8E-12 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0563 41213e1c3568fb3ff63c97883511a1d6 830 SMART SM00382 545 726 1.8E-9 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0555 64256418ffcd49b548b2b1b7f195f8d8 419 SUPERFAMILY SSF75217 1 228 1.11E-85 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases Amico_0555 64256418ffcd49b548b2b1b7f195f8d8 419 SUPERFAMILY SSF75217 262 412 5.06E-5 T 14-10-2018 IPR029028 Alpha/beta knot methyltransferases Amico_0555 64256418ffcd49b548b2b1b7f195f8d8 419 Pfam PF09936 SAM-dependent RNA methyltransferase 236 417 3.3E-67 T 14-10-2018 IPR019230 RNA methyltransferase domain Amico_0555 64256418ffcd49b548b2b1b7f195f8d8 419 Hamap MF_00605 tRNA (guanine-N(1)-)-methyltransferase [trmD]. 1 287 87.314 T 14-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Amico_0555 64256418ffcd49b548b2b1b7f195f8d8 419 Pfam PF01746 tRNA (Guanine-1)-methyltransferase 23 220 1.5E-51 T 14-10-2018 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Amico_0555 64256418ffcd49b548b2b1b7f195f8d8 419 Gene3D G3DSA:3.40.1280.10 1 174 8.0E-61 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Amico_0555 64256418ffcd49b548b2b1b7f195f8d8 419 TIGRFAM TIGR00088 trmD: tRNA (guanine(37)-N(1))-methyltransferase 1 225 4.5E-81 T 14-10-2018 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Amico_0555 64256418ffcd49b548b2b1b7f195f8d8 419 Gene3D G3DSA:3.40.1280.10 209 419 8.9E-66 T 14-10-2018 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal Amico_0555 64256418ffcd49b548b2b1b7f195f8d8 419 Gene3D G3DSA:1.10.1270.20 177 208 4.2E-16 T 14-10-2018 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal GO:0008033|GO:0052906 MetaCyc: PWY-6829|MetaCyc: PWY-7285|MetaCyc: PWY-7286 Amico_0826 57dd36af360d7705bd4673f79ff909be 408 Pfam PF03454 MoeA C-terminal region (domain IV) 354 408 1.6E-5 T 14-10-2018 IPR005111 MoeA, C-terminal, domain IV GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0826 57dd36af360d7705bd4673f79ff909be 408 Gene3D G3DSA:2.170.190.11 54 150 1.3E-82 T 14-10-2018 Amico_0826 57dd36af360d7705bd4673f79ff909be 408 SMART SM00852 188 330 3.4E-30 T 14-10-2018 IPR001453 MoaB/Mog domain Amico_0826 57dd36af360d7705bd4673f79ff909be 408 Pfam PF03453 MoeA N-terminal region (domain I and II) 34 176 1.9E-31 T 14-10-2018 IPR005110 MoeA, N-terminal and linker domain GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0826 57dd36af360d7705bd4673f79ff909be 408 Gene3D G3DSA:2.40.340.10 342 408 1.7E-8 T 14-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0826 57dd36af360d7705bd4673f79ff909be 408 Gene3D G3DSA:3.90.105.10 35 183 1.3E-82 T 14-10-2018 Amico_0826 57dd36af360d7705bd4673f79ff909be 408 SUPERFAMILY SSF63867 346 408 6.41E-9 T 14-10-2018 IPR036688 MoeA, C-terminal, domain IV superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0826 57dd36af360d7705bd4673f79ff909be 408 Pfam PF00994 Probable molybdopterin binding domain 188 328 1.9E-24 T 14-10-2018 IPR001453 MoaB/Mog domain Amico_0826 57dd36af360d7705bd4673f79ff909be 408 SUPERFAMILY SSF63882 29 182 3.66E-42 T 14-10-2018 IPR036135 MoeA, N-terminal and linker domain superfamily GO:0032324 KEGG: 00790+2.10.1.1|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0826 57dd36af360d7705bd4673f79ff909be 408 SUPERFAMILY SSF53218 185 334 9.03E-33 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Amico_0826 57dd36af360d7705bd4673f79ff909be 408 Gene3D G3DSA:3.40.980.10 184 328 1.3E-82 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Amico_0826 57dd36af360d7705bd4673f79ff909be 408 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 185 325 2.2E-25 T 14-10-2018 IPR001453 MoaB/Mog domain Amico_0263 54803d42760cdb33f8d329347d762b74 271 Gene3D G3DSA:3.40.50.1820 1 249 7.2E-17 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Amico_0263 54803d42760cdb33f8d329347d762b74 271 SUPERFAMILY SSF53474 6 260 9.47E-18 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Amico_0653 5da7edaf5d8a58f77c744df8ca5c07de 125 SUPERFAMILY SSF46946 2 121 4.45E-50 T 14-10-2018 IPR010979 Ribosomal protein S13-like, H2TH GO:0003676 Amico_0653 5da7edaf5d8a58f77c744df8ca5c07de 125 TIGRFAM TIGR03631 uS13_bact: ribosomal protein uS13 3 115 9.4E-57 T 14-10-2018 IPR019980 Ribosomal protein S13, bacterial-type GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0653 5da7edaf5d8a58f77c744df8ca5c07de 125 Gene3D G3DSA:4.10.910.10 73 125 1.7E-27 T 14-10-2018 IPR027437 30s ribosomal protein S13, C-terminal Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0653 5da7edaf5d8a58f77c744df8ca5c07de 125 Gene3D G3DSA:1.10.8.50 1 72 6.1E-32 T 14-10-2018 Amico_0653 5da7edaf5d8a58f77c744df8ca5c07de 125 ProSitePatterns PS00646 Ribosomal protein S13 signature. 88 101 - T 14-10-2018 IPR018269 Ribosomal protein S13, conserved site GO:0003723|GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0653 5da7edaf5d8a58f77c744df8ca5c07de 125 PIRSF PIRSF002134 1 125 9.4E-46 T 14-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0653 5da7edaf5d8a58f77c744df8ca5c07de 125 Hamap MF_01315 30S ribosomal protein S13 [rpsM]. 1 119 28.12 T 14-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0653 5da7edaf5d8a58f77c744df8ca5c07de 125 Pfam PF00416 Ribosomal protein S13/S18 3 109 3.2E-34 T 14-10-2018 IPR001892 Ribosomal protein S13 GO:0003723|GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0616 5c6960282967f0945d3b92eeef48beaa 264 Pfam PF01026 TatD related DNase 8 259 5.0E-78 T 14-10-2018 IPR001130 TatD family GO:0016788 Amico_0616 5c6960282967f0945d3b92eeef48beaa 264 Gene3D G3DSA:3.20.20.140 1 262 2.2E-96 T 14-10-2018 Amico_0616 5c6960282967f0945d3b92eeef48beaa 264 SUPERFAMILY SSF51556 7 261 3.12E-88 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_0616 5c6960282967f0945d3b92eeef48beaa 264 PIRSF PIRSF005902 3 264 6.7E-85 T 14-10-2018 IPR001130 TatD family GO:0016788 Amico_0616 5c6960282967f0945d3b92eeef48beaa 264 TIGRFAM TIGR00010 TIGR00010: hydrolase, TatD family 7 260 2.0E-84 T 14-10-2018 IPR015991 Uncharacterised hydrolase TatD-type GO:0004536 Amico_0616 5c6960282967f0945d3b92eeef48beaa 264 ProSitePatterns PS01137 TatD deoxyribonuclease family signature 1. 7 15 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Amico_0616 5c6960282967f0945d3b92eeef48beaa 264 ProSitePatterns PS01090 TatD deoxyribonuclease family signature 2. 131 141 - T 14-10-2018 IPR018228 Deoxyribonuclease, TatD-related, conserved site GO:0016888 Amico_1313 def74bcdf09ef3e55fb6930dc34a46e3 190 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 13 185 4.8E-35 T 14-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Amico_1313 def74bcdf09ef3e55fb6930dc34a46e3 190 SUPERFAMILY SSF53323 5 188 1.01E-42 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_1313 def74bcdf09ef3e55fb6930dc34a46e3 190 Gene3D G3DSA:3.40.920.10 3 189 4.8E-60 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_1313 def74bcdf09ef3e55fb6930dc34a46e3 190 TIGRFAM TIGR02175 PorC_KorC: 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate family 5 188 1.8E-54 T 14-10-2018 IPR011894 2-oxoacid:acceptor oxidoreductase, gamma subunit, pyruvate/2-ketoisovalerate GO:0016625|GO:0055114 Amico_1748 237a9775d5294c3d0ffa8c21e197134c 114 SUPERFAMILY SSF47413 2 69 6.44E-16 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Amico_1748 237a9775d5294c3d0ffa8c21e197134c 114 SMART SM00530 10 65 9.3E-12 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_1748 237a9775d5294c3d0ffa8c21e197134c 114 Gene3D G3DSA:1.10.260.40 6 111 9.3E-17 T 14-10-2018 Amico_1748 237a9775d5294c3d0ffa8c21e197134c 114 Pfam PF12844 Helix-turn-helix domain 8 69 3.1E-12 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_1166 780896ccdbb98ffff6ba755e5b798c8a 457 SUPERFAMILY SSF53271 240 452 8.98E-60 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Amico_1166 780896ccdbb98ffff6ba755e5b798c8a 457 Pfam PF13537 Glutamine amidotransferase domain 84 201 4.2E-22 T 14-10-2018 IPR017932 Glutamine amidotransferase type 2 domain Amico_1166 780896ccdbb98ffff6ba755e5b798c8a 457 PIRSF PIRSF000485 1 456 5.5E-165 T 14-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Amico_1166 780896ccdbb98ffff6ba755e5b798c8a 457 SUPERFAMILY SSF56235 2 246 1.37E-67 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Amico_1166 780896ccdbb98ffff6ba755e5b798c8a 457 Gene3D G3DSA:3.60.20.10 2 447 1.1E-148 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Amico_1166 780896ccdbb98ffff6ba755e5b798c8a 457 TIGRFAM TIGR01134 purF: amidophosphoribosyltransferase 2 446 3.7E-150 T 14-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Amico_1166 780896ccdbb98ffff6ba755e5b798c8a 457 Gene3D G3DSA:3.40.50.2020 264 429 1.1E-148 T 14-10-2018 Amico_1166 780896ccdbb98ffff6ba755e5b798c8a 457 Hamap MF_01931 Amidophosphoribosyltransferase [purF]. 1 446 44.75 T 14-10-2018 IPR005854 Amidophosphoribosyltransferase GO:0004044|GO:0009113 KEGG: 00230+2.4.2.14|KEGG: 00250+2.4.2.14|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|MetaCyc: PWY-7282|Reactome: R-HSA-73817 Amico_0192 b833977b86d4bb48af2667a1727a8070 163 Gene3D G3DSA:2.60.40.790 16 158 1.5E-32 T 14-10-2018 IPR008978 HSP20-like chaperone Amico_0192 b833977b86d4bb48af2667a1727a8070 163 SUPERFAMILY SSF49764 20 157 3.56E-29 T 14-10-2018 IPR008978 HSP20-like chaperone Amico_0192 b833977b86d4bb48af2667a1727a8070 163 Pfam PF00011 Hsp20/alpha crystallin family 59 154 1.1E-14 T 14-10-2018 IPR002068 Alpha crystallin/Hsp20 domain Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 PRINTS PR00474 Glutamate 5-kinase family signature 42 56 3.0E-52 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 PRINTS PR00474 Glutamate 5-kinase family signature 76 104 3.0E-52 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 PRINTS PR00474 Glutamate 5-kinase family signature 116 137 3.0E-52 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 PRINTS PR00474 Glutamate 5-kinase family signature 148 175 3.0E-52 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 PRINTS PR00474 Glutamate 5-kinase family signature 209 229 3.0E-52 T 14-10-2018 IPR001057 Glutamate/acetylglutamate kinase Reactome: R-HSA-70614 Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 PIRSF PIRSF000729 2 368 6.0E-144 T 14-10-2018 IPR011529 Glutamate 5-kinase GO:0004349|GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 Gene3D G3DSA:2.30.130.10 266 368 2.4E-38 T 14-10-2018 IPR036974 PUA domain superfamily GO:0003723 Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 Gene3D G3DSA:3.40.1160.10 1 265 2.0E-90 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 Hamap MF_00456 Glutamate 5-kinase [proB]. 5 259 38.413 T 14-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 SUPERFAMILY SSF88697 276 367 1.38E-25 T 14-10-2018 IPR015947 PUA-like superfamily Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 SUPERFAMILY SSF53633 5 257 1.96E-70 T 14-10-2018 IPR036393 Acetylglutamate kinase-like superfamily Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 ProSitePatterns PS00902 Glutamate 5-kinase signature. 207 224 - T 14-10-2018 IPR019797 Glutamate 5-kinase, conserved site GO:0004349|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 Pfam PF01472 PUA domain 277 351 5.4E-24 T 14-10-2018 IPR002478 PUA domain GO:0003723 Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 SMART SM00359 277 360 8.3E-21 T 14-10-2018 IPR002478 PUA domain GO:0003723 Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 Pfam PF00696 Amino acid kinase family 5 235 9.5E-43 T 14-10-2018 IPR001048 Aspartate/glutamate/uridylate kinase Reactome: R-HSA-70614 Amico_0237 c7570e2846025c96769e36c32cfcaa04 368 TIGRFAM TIGR01027 proB: glutamate 5-kinase 5 366 2.6E-139 T 14-10-2018 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase GO:0005737|GO:0006561 KEGG: 00330+2.7.2.11|KEGG: 00332+2.7.2.11|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Amico_1710 9923488bd4db0a0c13beceba5a877241 330 SUPERFAMILY SSF46785 10 73 8.24E-8 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1710 9923488bd4db0a0c13beceba5a877241 330 Pfam PF01995 Domain of unknown function DUF128 94 325 7.8E-48 T 14-10-2018 IPR002846 NrpR regulatory domain Amico_1710 9923488bd4db0a0c13beceba5a877241 330 Pfam PF08461 Ribonuclease R winged-helix domain 12 76 3.2E-15 T 14-10-2018 IPR013668 Ribonuclease R winged-helix domain Amico_1710 9923488bd4db0a0c13beceba5a877241 330 Gene3D G3DSA:1.10.10.10 8 78 2.9E-5 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1710 9923488bd4db0a0c13beceba5a877241 330 Gene3D G3DSA:3.30.70.1360 101 319 3.6E-25 T 14-10-2018 IPR036984 NrpR domain superfamily Amico_1710 9923488bd4db0a0c13beceba5a877241 330 Gene3D G3DSA:3.30.70.1360 170 296 3.6E-25 T 14-10-2018 IPR036984 NrpR domain superfamily Amico_1337 3a123f5c41d56931f14eb1f8ec41110f 1065 SUPERFAMILY SSF52540 344 812 1.59E-34 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1337 3a123f5c41d56931f14eb1f8ec41110f 1065 SUPERFAMILY SSF56024 113 199 8.79E-7 T 14-10-2018 Amico_1337 3a123f5c41d56931f14eb1f8ec41110f 1065 SMART SM00490 678 766 1.3E-15 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_1337 3a123f5c41d56931f14eb1f8ec41110f 1065 SMART SM00487 249 416 0.0018 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Amico_1337 3a123f5c41d56931f14eb1f8ec41110f 1065 Gene3D G3DSA:3.40.50.300 241 401 7.1E-15 T 14-10-2018 Amico_1337 3a123f5c41d56931f14eb1f8ec41110f 1065 Pfam PF13091 PLD-like domain 25 194 3.0E-11 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Amico_1337 3a123f5c41d56931f14eb1f8ec41110f 1065 Gene3D G3DSA:3.40.50.300 584 800 5.0E-33 T 14-10-2018 Amico_1337 3a123f5c41d56931f14eb1f8ec41110f 1065 Pfam PF00176 SNF2 family N-terminal domain 347 474 4.9E-9 T 14-10-2018 IPR000330 SNF2-related, N-terminal domain GO:0005524 Amico_1337 3a123f5c41d56931f14eb1f8ec41110f 1065 SUPERFAMILY SSF52540 251 465 4.48E-23 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1337 3a123f5c41d56931f14eb1f8ec41110f 1065 Pfam PF00271 Helicase conserved C-terminal domain 649 765 6.1E-19 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_1064 573dcb9c05af2eb4a7f23f531a9576c5 317 PIRSF PIRSF000446 1 312 1.0E-104 T 14-10-2018 IPR024925 Malonyl CoA-acyl carrier protein transacylase KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Amico_1064 573dcb9c05af2eb4a7f23f531a9576c5 317 SUPERFAMILY SSF52151 3 310 3.92E-74 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Amico_1064 573dcb9c05af2eb4a7f23f531a9576c5 317 SUPERFAMILY SSF55048 129 198 2.35E-16 T 14-10-2018 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding Amico_1064 573dcb9c05af2eb4a7f23f531a9576c5 317 Gene3D G3DSA:3.40.366.10 6 286 5.8E-98 T 14-10-2018 IPR001227 Acyl transferase domain superfamily GO:0016740 Amico_1064 573dcb9c05af2eb4a7f23f531a9576c5 317 TIGRFAM TIGR00128 fabD: malonyl CoA-acyl carrier protein transacylase 2 291 2.5E-104 T 14-10-2018 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type GO:0004314 KEGG: 00061+2.3.1.39|MetaCyc: PWY-4381|MetaCyc: PWY-6799|MetaCyc: PWY-7388 Amico_1064 573dcb9c05af2eb4a7f23f531a9576c5 317 Gene3D G3DSA:3.30.70.250 128 200 5.8E-98 T 14-10-2018 Amico_1064 573dcb9c05af2eb4a7f23f531a9576c5 317 Pfam PF00698 Acyl transferase domain 6 290 8.8E-49 T 14-10-2018 IPR014043 Acyl transferase Amico_1064 573dcb9c05af2eb4a7f23f531a9576c5 317 SMART SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. 6 314 3.5E-55 T 14-10-2018 IPR020801 Polyketide synthase, acyl transferase domain Amico_1089 959bff698af72221b3abb5336473ad45 225 Hamap MF_00238 Cytidylate kinase [cmk]. 6 220 32.855 T 14-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Amico_1089 959bff698af72221b3abb5336473ad45 225 Gene3D G3DSA:3.40.50.300 1 223 1.2E-79 T 14-10-2018 Amico_1089 959bff698af72221b3abb5336473ad45 225 SUPERFAMILY SSF52540 3 218 1.04E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1089 959bff698af72221b3abb5336473ad45 225 TIGRFAM TIGR00017 cmk: cytidylate kinase 5 214 9.6E-70 T 14-10-2018 IPR003136 Cytidylate kinase GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Amico_1089 959bff698af72221b3abb5336473ad45 225 Pfam PF02224 Cytidylate kinase 8 217 1.5E-72 T 14-10-2018 IPR011994 Cytidylate kinase domain GO:0004127|GO:0005524|GO:0006139 KEGG: 00240+2.7.4.25|MetaCyc: PWY-7205 Amico_0728 e62672398cf851800afa953ff3d7315e 310 SUPERFAMILY SSF53613 1 282 5.3E-53 T 14-10-2018 IPR029056 Ribokinase-like Amico_0728 e62672398cf851800afa953ff3d7315e 310 Gene3D G3DSA:3.40.1190.20 1 309 8.5E-80 T 14-10-2018 IPR029056 Ribokinase-like Amico_0728 e62672398cf851800afa953ff3d7315e 310 PIRSF PIRSF000535 1 309 1.6E-63 T 14-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 Amico_0728 e62672398cf851800afa953ff3d7315e 310 TIGRFAM TIGR03168 1-PFK: hexose kinase, 1-phosphofructokinase family 2 306 5.3E-77 T 14-10-2018 IPR017583 Tagatose/fructose phosphokinase GO:0005975|GO:0016773 Amico_0728 e62672398cf851800afa953ff3d7315e 310 Pfam PF00294 pfkB family carbohydrate kinase 33 280 1.4E-31 T 14-10-2018 IPR011611 Carbohydrate kinase PfkB Amico_0477 72bdd47d0f8eb8d9cec0be78c0acac8f 156 Pfam PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain 74 151 6.2E-30 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Amico_0477 72bdd47d0f8eb8d9cec0be78c0acac8f 156 TIGRFAM TIGR00589 ogt: methylated-DNA--[protein]-cysteine S-methyltransferase 72 151 2.3E-33 T 14-10-2018 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding GO:0003824|GO:0006281 Reactome: R-HSA-5657655 Amico_0477 72bdd47d0f8eb8d9cec0be78c0acac8f 156 Pfam PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain 6 68 8.1E-9 T 14-10-2018 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Amico_0477 72bdd47d0f8eb8d9cec0be78c0acac8f 156 SUPERFAMILY SSF53155 4 75 1.82E-14 T 14-10-2018 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Amico_0477 72bdd47d0f8eb8d9cec0be78c0acac8f 156 Gene3D G3DSA:3.30.160.70 1 67 5.9E-14 T 14-10-2018 Amico_0477 72bdd47d0f8eb8d9cec0be78c0acac8f 156 ProSitePatterns PS00374 Methylated-DNA--protein-cysteine methyltransferase active site. 122 128 - T 14-10-2018 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site GO:0003908|GO:0006281 Reactome: R-HSA-5657655 Amico_0477 72bdd47d0f8eb8d9cec0be78c0acac8f 156 SUPERFAMILY SSF46767 71 152 9.42E-31 T 14-10-2018 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain Reactome: R-HSA-5657655 Amico_0477 72bdd47d0f8eb8d9cec0be78c0acac8f 156 Gene3D G3DSA:1.10.10.10 71 156 1.1E-33 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0477 72bdd47d0f8eb8d9cec0be78c0acac8f 156 Hamap MF_00772 Methylated-DNA--protein-cysteine methyltransferase [ogt]. 5 152 42.245 T 14-10-2018 IPR023546 Methylated-DNA--protein-cysteine methyltransferase GO:0003824|GO:0006281 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 Gene3D G3DSA:3.30.70.1440 649 850 9.3E-247 T 14-10-2018 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 Pfam PF00873 AcrB/AcrD/AcrF family 3 1002 3.2E-160 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 Gene3D G3DSA:3.30.2090.10 702 792 9.3E-247 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_0398 526423ed210d679ddd964cb507001ba6 1014 SUPERFAMILY SSF82866 292 490 1.31E-33 T 14-10-2018 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 SUPERFAMILY SSF82693 40 134 6.45E-20 T 14-10-2018 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 Gene3D G3DSA:3.30.70.1430 40 800 9.3E-247 T 14-10-2018 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 Gene3D G3DSA:3.30.2090.10 180 272 9.3E-247 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_0398 526423ed210d679ddd964cb507001ba6 1014 Gene3D G3DSA:3.30.70.1430 552 648 9.3E-247 T 14-10-2018 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 Gene3D G3DSA:1.20.1640.10 11 497 9.3E-247 T 14-10-2018 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 Gene3D G3DSA:1.20.1640.10 498 999 9.3E-247 T 14-10-2018 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 SUPERFAMILY SSF82866 786 1004 2.75E-43 T 14-10-2018 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 SUPERFAMILY SSF82714 184 265 6.41E-13 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_0398 526423ed210d679ddd964cb507001ba6 1014 PRINTS PR00702 Acriflavin resistance protein family signature 463 486 4.1E-23 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 PRINTS PR00702 Acriflavin resistance protein family signature 438 461 4.1E-23 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 PRINTS PR00702 Acriflavin resistance protein family signature 331 354 4.1E-23 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 PRINTS PR00702 Acriflavin resistance protein family signature 10 34 4.1E-23 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 PRINTS PR00702 Acriflavin resistance protein family signature 385 409 4.1E-23 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 PRINTS PR00702 Acriflavin resistance protein family signature 38 56 4.1E-23 T 14-10-2018 IPR001036 Acriflavin resistance protein GO:0016020|GO:0022857|GO:0055085 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 Gene3D G3DSA:3.30.70.1320 135 325 9.3E-247 T 14-10-2018 Amico_0398 526423ed210d679ddd964cb507001ba6 1014 SUPERFAMILY SSF82714 703 770 9.16E-7 T 14-10-2018 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains Amico_0398 526423ed210d679ddd964cb507001ba6 1014 SUPERFAMILY SSF82693 136 323 1.73E-21 T 14-10-2018 Amico_1132 bcbfe3ff16e2bcab5d4b1ecb8d749add 289 Pfam PF13730 Helix-turn-helix domain 26 81 4.1E-14 T 14-10-2018 Amico_1132 bcbfe3ff16e2bcab5d4b1ecb8d749add 289 SUPERFAMILY SSF46785 27 87 9.4E-5 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1132 bcbfe3ff16e2bcab5d4b1ecb8d749add 289 Gene3D G3DSA:1.10.10.10 22 101 3.0E-14 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0920 c513d82d6548be5563f4d32f929a3114 339 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 43 317 2.2E-46 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_0920 c513d82d6548be5563f4d32f929a3114 339 Gene3D G3DSA:3.40.190.170 31 339 9.5E-70 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1253 889473bead7ed78abd7b37e40be21d3c 345 Pfam PF13274 Protein of unknown function (DUF4065) 213 324 2.3E-19 T 14-10-2018 IPR025272 Domain of unknown function DUF4065 Amico_1253 889473bead7ed78abd7b37e40be21d3c 345 Pfam PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA 5 121 1.4E-8 T 14-10-2018 IPR032758 Antitoxin MqsA/HigA-2 Amico_1253 889473bead7ed78abd7b37e40be21d3c 345 Gene3D G3DSA:1.10.260.40 19 131 1.4E-19 T 14-10-2018 Amico_1253 889473bead7ed78abd7b37e40be21d3c 345 TIGRFAM TIGR03830 CxxCG_CxxCG_HTH: putative zinc finger/helix-turn-helix protein, YgiT family 6 129 1.7E-22 T 14-10-2018 IPR022452 Antitoxin MqsA Amico_1253 889473bead7ed78abd7b37e40be21d3c 345 SUPERFAMILY SSF47413 76 131 2.08E-6 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Amico_0864 a241b95a61be009637186f91335d35e4 352 SUPERFAMILY SSF52540 22 252 2.89E-51 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0864 a241b95a61be009637186f91335d35e4 352 Gene3D G3DSA:3.40.50.300 20 183 2.3E-36 T 14-10-2018 Amico_0864 a241b95a61be009637186f91335d35e4 352 SUPERFAMILY SSF46785 258 332 1.19E-24 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0864 a241b95a61be009637186f91335d35e4 352 Gene3D G3DSA:1.10.8.60 184 258 5.1E-28 T 14-10-2018 Amico_0864 a241b95a61be009637186f91335d35e4 352 ProDom PD005323 DNA HELICASE HOLLIDAY JUNCTION RUVB NUCLEOTIDE-BINDING ATP-BINDING SOS RECOMBINATION RESPONSE 265 332 2.0E-18 T 14-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Amico_0864 a241b95a61be009637186f91335d35e4 352 Pfam PF05496 Holliday junction DNA helicase ruvB N-terminus 12 237 1.6E-106 T 14-10-2018 IPR008824 Holliday junction DNA helicase ruvB, N-terminal GO:0006281|GO:0006310|GO:0009378 Amico_0864 a241b95a61be009637186f91335d35e4 352 Gene3D G3DSA:1.10.10.10 259 337 2.3E-31 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0864 a241b95a61be009637186f91335d35e4 352 Hamap MF_00016 Holliday junction ATP-dependent DNA helicase RuvB [ruvB]. 1 352 148.805 T 14-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Amico_0864 a241b95a61be009637186f91335d35e4 352 TIGRFAM TIGR00635 ruvB: Holliday junction DNA helicase RuvB 26 328 1.2E-134 T 14-10-2018 IPR004605 DNA helicase, Holliday junction RuvB type GO:0003677|GO:0005524|GO:0006281|GO:0006310|GO:0009378 Amico_0864 a241b95a61be009637186f91335d35e4 352 SMART SM00382 53 184 4.3E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0864 a241b95a61be009637186f91335d35e4 352 Pfam PF05491 Holliday junction DNA helicase ruvB C-terminus 256 328 3.2E-31 T 14-10-2018 IPR008823 DNA helicase, Holliday junction RuvB type, C-terminal GO:0003677|GO:0006281|GO:0006310|GO:0009378 Amico_0686 687872a27c2baae998565a34f6dc7072 444 SUPERFAMILY SSF141322 365 431 1.26E-11 T 14-10-2018 Amico_0686 687872a27c2baae998565a34f6dc7072 444 Pfam PF00574 Clp protease 56 188 1.6E-4 T 14-10-2018 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA Amico_0686 687872a27c2baae998565a34f6dc7072 444 Gene3D G3DSA:2.40.50.140 369 441 1.0E-21 T 14-10-2018 Amico_0686 687872a27c2baae998565a34f6dc7072 444 Gene3D G3DSA:3.90.226.10 21 244 1.3E-56 T 14-10-2018 Amico_0686 687872a27c2baae998565a34f6dc7072 444 Pfam PF01957 NfeD-like C-terminal, partner-binding 292 432 8.6E-27 T 14-10-2018 IPR002810 NfeD-like, C-terminal domain Amico_0686 687872a27c2baae998565a34f6dc7072 444 SUPERFAMILY SSF52096 26 191 1.26E-24 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Amico_0687 58bf8738d253f2ec26d357a51cd7d831 263 PRINTS PR00721 Stomatin signature 161 179 1.4E-68 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Amico_0687 58bf8738d253f2ec26d357a51cd7d831 263 PRINTS PR00721 Stomatin signature 137 160 1.4E-68 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Amico_0687 58bf8738d253f2ec26d357a51cd7d831 263 PRINTS PR00721 Stomatin signature 117 134 1.4E-68 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Amico_0687 58bf8738d253f2ec26d357a51cd7d831 263 PRINTS PR00721 Stomatin signature 35 57 1.4E-68 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Amico_0687 58bf8738d253f2ec26d357a51cd7d831 263 PRINTS PR00721 Stomatin signature 82 103 1.4E-68 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Amico_0687 58bf8738d253f2ec26d357a51cd7d831 263 PRINTS PR00721 Stomatin signature 180 201 1.4E-68 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Amico_0687 58bf8738d253f2ec26d357a51cd7d831 263 PRINTS PR00721 Stomatin signature 205 228 1.4E-68 T 14-10-2018 IPR001972 Stomatin family GO:0016020 Amico_0687 58bf8738d253f2ec26d357a51cd7d831 263 Pfam PF01145 SPFH domain / Band 7 family 32 201 2.4E-35 T 14-10-2018 IPR001107 Band 7 domain Amico_0687 58bf8738d253f2ec26d357a51cd7d831 263 ProSitePatterns PS01270 Band 7 protein family signature. 141 169 - T 14-10-2018 IPR018080 Band 7/stomatin-like, conserved site Amico_0687 58bf8738d253f2ec26d357a51cd7d831 263 SMART SM00244 28 185 5.7E-65 T 14-10-2018 IPR001107 Band 7 domain Amico_0687 58bf8738d253f2ec26d357a51cd7d831 263 SUPERFAMILY SSF117892 59 192 9.15E-46 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily Amico_0687 58bf8738d253f2ec26d357a51cd7d831 263 Gene3D G3DSA:3.30.479.30 56 187 1.3E-50 T 14-10-2018 Amico_0781 77fc5f7095425a9283c60e3be1ecd336 920 SUPERFAMILY SSF52540 1 536 1.08E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0781 77fc5f7095425a9283c60e3be1ecd336 920 ProSitePatterns PS00211 ABC transporters family signature. 454 468 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0781 77fc5f7095425a9283c60e3be1ecd336 920 Gene3D G3DSA:1.20.1580.10 64 459 1.2E-213 T 14-10-2018 Amico_0781 77fc5f7095425a9283c60e3be1ecd336 920 ProSitePatterns PS00211 ABC transporters family signature. 795 809 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0781 77fc5f7095425a9283c60e3be1ecd336 920 SUPERFAMILY SSF52540 584 879 2.02E-43 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0781 77fc5f7095425a9283c60e3be1ecd336 920 Gene3D G3DSA:1.10.8.280 258 370 1.2E-213 T 14-10-2018 Amico_0781 77fc5f7095425a9283c60e3be1ecd336 920 Gene3D G3DSA:3.30.190.20 104 215 1.2E-213 T 14-10-2018 Amico_0781 77fc5f7095425a9283c60e3be1ecd336 920 Pfam PF00005 ABC transporter 589 825 1.7E-6 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0781 77fc5f7095425a9283c60e3be1ecd336 920 TIGRFAM TIGR00630 uvra: excinuclease ABC subunit A 1 890 0.0 T 14-10-2018 IPR004602 UvrABC system subunit A GO:0003677|GO:0006289|GO:0009380|GO:0016887 Amico_0781 77fc5f7095425a9283c60e3be1ecd336 920 Gene3D G3DSA:1.20.1580.10 657 795 1.7E-128 T 14-10-2018 Amico_0781 77fc5f7095425a9283c60e3be1ecd336 920 Gene3D G3DSA:3.40.50.300 581 901 1.7E-128 T 14-10-2018 Amico_0781 77fc5f7095425a9283c60e3be1ecd336 920 Gene3D G3DSA:3.40.50.300 1 560 1.2E-213 T 14-10-2018 Amico_1223 36041f97d98efef7159d27ff345263e3 152 SUPERFAMILY SSF52402 1 142 2.51E-27 T 14-10-2018 Amico_1223 36041f97d98efef7159d27ff345263e3 152 Pfam PF00582 Universal stress protein family 1 140 1.8E-24 T 14-10-2018 IPR006016 UspA Amico_1223 36041f97d98efef7159d27ff345263e3 152 Gene3D G3DSA:3.40.50.620 1 140 4.3E-28 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1223 36041f97d98efef7159d27ff345263e3 152 PRINTS PR01438 Universal stress protein signature 102 114 5.2E-11 T 14-10-2018 IPR006015 Universal stress protein A Amico_1223 36041f97d98efef7159d27ff345263e3 152 PRINTS PR01438 Universal stress protein signature 1 15 5.2E-11 T 14-10-2018 IPR006015 Universal stress protein A Amico_1223 36041f97d98efef7159d27ff345263e3 152 PRINTS PR01438 Universal stress protein signature 120 142 5.2E-11 T 14-10-2018 IPR006015 Universal stress protein A Amico_0405 8eeff487100a0cf9a12686539afb4b7c 428 SUPERFAMILY SSF103473 10 411 1.83E-40 T 14-10-2018 IPR036259 MFS transporter superfamily Amico_0405 8eeff487100a0cf9a12686539afb4b7c 428 Pfam PF11700 Vacuole effluxer Atg22 like 54 420 1.7E-58 T 14-10-2018 IPR024671 Autophagy-related protein 22-like Amico_0405 8eeff487100a0cf9a12686539afb4b7c 428 Gene3D G3DSA:1.20.1250.20 12 412 2.4E-31 T 14-10-2018 Amico_0489 64d72cbdb97dd9caf1ec1b5c0ea6298d 407 Pfam PF02687 FtsX-like permease family 313 399 8.8E-13 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Amico_0489 64d72cbdb97dd9caf1ec1b5c0ea6298d 407 Pfam PF12704 MacB-like periplasmic core domain 22 246 2.2E-37 T 14-10-2018 IPR025857 MacB-like periplasmic core domain Amico_1736 28f73b70a7297c99a764e65ec87e4964 183 Gene3D G3DSA:1.10.10.10 4 101 6.1E-8 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1736 28f73b70a7297c99a764e65ec87e4964 183 Pfam PF07848 PaaX-like protein 28 67 8.0E-6 T 14-10-2018 IPR012906 PaaX-like, N-terminal Amico_1736 28f73b70a7297c99a764e65ec87e4964 183 SUPERFAMILY SSF46785 6 169 9.62E-10 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0638 526d18c4d22110507ac9ae07b09a8502 108 Pfam PF00467 KOW motif 8 39 6.4E-7 T 14-10-2018 IPR005824 KOW Amico_0638 526d18c4d22110507ac9ae07b09a8502 108 Hamap MF_01326_B 50S ribosomal protein L24 [rplX]. 4 99 21.47 T 14-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0638 526d18c4d22110507ac9ae07b09a8502 108 SUPERFAMILY SSF50104 2 104 1.16E-37 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily Amico_0638 526d18c4d22110507ac9ae07b09a8502 108 Pfam PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 41 104 1.5E-29 T 14-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0638 526d18c4d22110507ac9ae07b09a8502 108 Gene3D G3DSA:2.30.30.30 1 104 1.6E-41 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 Amico_0638 526d18c4d22110507ac9ae07b09a8502 108 TIGRFAM TIGR01079 rplX_bact: ribosomal protein uL24 4 105 5.5E-38 T 14-10-2018 IPR003256 Ribosomal protein L24 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0638 526d18c4d22110507ac9ae07b09a8502 108 SMART SM00739 5 32 6.3E-6 T 14-10-2018 IPR005824 KOW Amico_0638 526d18c4d22110507ac9ae07b09a8502 108 ProSitePatterns PS01108 Ribosomal protein L24 signature. 9 26 - T 14-10-2018 IPR005825 Ribosomal protein L24/L26, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_1573 a5525c31d40e3d6a1dd794d3ede76ec3 263 Gene3D G3DSA:3.30.420.10 1 193 7.8E-15 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Amico_1573 a5525c31d40e3d6a1dd794d3ede76ec3 263 SUPERFAMILY SSF53098 1 202 1.19E-16 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Amico_1571 cb90b5237e4c007583ce73c466ba347c 547 Gene3D G3DSA:3.60.21.10 28 322 1.5E-65 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Amico_1571 cb90b5237e4c007583ce73c466ba347c 547 PRINTS PR01607 Apyrase family signature 27 45 1.9E-30 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Amico_1571 cb90b5237e4c007583ce73c466ba347c 547 PRINTS PR01607 Apyrase family signature 228 251 1.9E-30 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Amico_1571 cb90b5237e4c007583ce73c466ba347c 547 PRINTS PR01607 Apyrase family signature 261 281 1.9E-30 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Amico_1571 cb90b5237e4c007583ce73c466ba347c 547 PRINTS PR01607 Apyrase family signature 381 404 1.9E-30 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Amico_1571 cb90b5237e4c007583ce73c466ba347c 547 PRINTS PR01607 Apyrase family signature 482 501 1.9E-30 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Amico_1571 cb90b5237e4c007583ce73c466ba347c 547 PRINTS PR01607 Apyrase family signature 209 226 1.9E-30 T 14-10-2018 IPR006179 5'-Nucleotidase/apyrase GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Amico_1571 cb90b5237e4c007583ce73c466ba347c 547 Pfam PF02872 5'-nucleotidase, C-terminal domain 326 508 6.2E-40 T 14-10-2018 IPR008334 5'-Nucleotidase, C-terminal GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Amico_1571 cb90b5237e4c007583ce73c466ba347c 547 SUPERFAMILY SSF55816 322 546 2.49E-49 T 14-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Amico_1571 cb90b5237e4c007583ce73c466ba347c 547 SUPERFAMILY SSF56300 27 323 2.85E-64 T 14-10-2018 Amico_1571 cb90b5237e4c007583ce73c466ba347c 547 Gene3D G3DSA:3.90.780.10 326 547 5.0E-55 T 14-10-2018 IPR036907 5'-Nucleotidase, C-terminal domain superfamily GO:0009166|GO:0016787 Reactome: R-HSA-196807|Reactome: R-HSA-73621|Reactome: R-HSA-74259 Amico_1903 5d9331d0a2f5a5bd8f3ff0833c93058e 365 Gene3D G3DSA:3.30.70.360 172 283 1.4E-101 T 14-10-2018 Amico_1903 5d9331d0a2f5a5bd8f3ff0833c93058e 365 TIGRFAM TIGR01883 PepT-like: peptidase T-like protein 6 362 1.3E-99 T 14-10-2018 IPR010162 Peptidase M20B, peptidase T-like Amico_1903 5d9331d0a2f5a5bd8f3ff0833c93058e 365 SUPERFAMILY SSF53187 6 362 3.02E-47 T 14-10-2018 Amico_1903 5d9331d0a2f5a5bd8f3ff0833c93058e 365 PIRSF PIRSF001123 303 365 0.0052 T 14-10-2018 IPR008007 Peptidase M42 Amico_1903 5d9331d0a2f5a5bd8f3ff0833c93058e 365 PIRSF PIRSF001123 5 95 0.0096 T 14-10-2018 IPR008007 Peptidase M42 Amico_1903 5d9331d0a2f5a5bd8f3ff0833c93058e 365 PIRSF PIRSF001123 95 178 1.7E-6 T 14-10-2018 IPR008007 Peptidase M42 Amico_1903 5d9331d0a2f5a5bd8f3ff0833c93058e 365 SUPERFAMILY SSF55031 179 282 2.22E-17 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1903 5d9331d0a2f5a5bd8f3ff0833c93058e 365 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 67 76 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Amico_1903 5d9331d0a2f5a5bd8f3ff0833c93058e 365 Pfam PF01546 Peptidase family M20/M25/M40 68 362 8.4E-17 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1903 5d9331d0a2f5a5bd8f3ff0833c93058e 365 Pfam PF07687 Peptidase dimerisation domain 181 268 1.4E-12 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1903 5d9331d0a2f5a5bd8f3ff0833c93058e 365 Gene3D G3DSA:3.40.630.10 7 344 1.4E-101 T 14-10-2018 Amico_1792 d40f59c488e64b4cbdc311c471482964 282 SUPERFAMILY SSF52402 20 212 2.87E-27 T 14-10-2018 Amico_1792 d40f59c488e64b4cbdc311c471482964 282 Gene3D G3DSA:3.40.50.620 11 174 2.0E-20 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1792 d40f59c488e64b4cbdc311c471482964 282 Pfam PF00733 Asparagine synthase 7 51 6.1E-6 T 14-10-2018 IPR001962 Asparagine synthase GO:0004066|GO:0006529 Amico_1792 d40f59c488e64b4cbdc311c471482964 282 PIRSF PIRSF006661 4 276 7.2E-56 T 14-10-2018 IPR005232 Pyridinium-3,5-bisthiocarboxylic acid mononucleotide synthase LarE GO:0016783 Amico_0683 60e5e952624480e8cdb0c86868b2a9a8 401 PIRSF PIRSF001549 1 389 1.5E-38 T 14-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Amico_0683 60e5e952624480e8cdb0c86868b2a9a8 401 SUPERFAMILY SSF55681 2 313 4.66E-37 T 14-10-2018 Amico_0683 60e5e952624480e8cdb0c86868b2a9a8 401 Gene3D G3DSA:3.30.930.10 1 313 4.5E-53 T 14-10-2018 Amico_0683 60e5e952624480e8cdb0c86868b2a9a8 401 Pfam PF13393 Histidyl-tRNA synthetase 16 309 8.0E-53 T 14-10-2018 Amico_0023 207d3c58d119c6764fb3d2525feef683 393 Gene3D G3DSA:2.30.40.10 6 391 5.9E-142 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_0023 207d3c58d119c6764fb3d2525feef683 393 PIRSF PIRSF001238 3 392 1.9E-142 T 14-10-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 Amico_0023 207d3c58d119c6764fb3d2525feef683 393 SUPERFAMILY SSF51338 4 389 9.78E-15 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_0023 207d3c58d119c6764fb3d2525feef683 393 SUPERFAMILY SSF51556 62 348 2.1E-63 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_0023 207d3c58d119c6764fb3d2525feef683 393 ProSitePatterns PS00482 Dihydroorotase signature 1. 65 73 - T 14-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Amico_0023 207d3c58d119c6764fb3d2525feef683 393 Gene3D G3DSA:3.20.20.140 63 344 5.9E-142 T 14-10-2018 Amico_0023 207d3c58d119c6764fb3d2525feef683 393 TIGRFAM TIGR01975 isoAsp_dipep: beta-aspartyl peptidase 5 391 5.7E-137 T 14-10-2018 IPR010229 Peptidase M38, beta-aspartyl dipeptidase GO:0008798 Amico_0023 207d3c58d119c6764fb3d2525feef683 393 Pfam PF01979 Amidohydrolase family 58 364 6.6E-9 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Amico_1906 a3ff2e61ffc50ed2c3c7d7329a9a7c14 548 SUPERFAMILY SSF56821 1 547 1.83E-197 T 14-10-2018 IPR011254 Prismane-like superfamily GO:0003824|GO:0016491|GO:0055114 Amico_1906 a3ff2e61ffc50ed2c3c7d7329a9a7c14 548 Hamap MF_00069 Hydroxylamine reductase [hcp]. 1 548 21.089 T 14-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Amico_1906 a3ff2e61ffc50ed2c3c7d7329a9a7c14 548 PIRSF PIRSF000076 1 548 9.0E-235 T 14-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Amico_1906 a3ff2e61ffc50ed2c3c7d7329a9a7c14 548 Gene3D G3DSA:1.20.1270.20 148 231 2.4E-30 T 14-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Amico_1906 a3ff2e61ffc50ed2c3c7d7329a9a7c14 548 Gene3D G3DSA:3.40.50.2030 233 378 8.0E-67 T 14-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Amico_1906 a3ff2e61ffc50ed2c3c7d7329a9a7c14 548 Pfam PF03063 Prismane/CO dehydrogenase family 1 543 1.5E-168 T 14-10-2018 IPR004137 Hydroxylamine reductase/Ni-containing CO dehydrogenase GO:0016491|GO:0055114 KEGG: 00910+1.7.99.1 Amico_1906 a3ff2e61ffc50ed2c3c7d7329a9a7c14 548 Gene3D G3DSA:1.20.1270.20 1 137 1.9E-46 T 14-10-2018 IPR016100 Prismane, alpha-bundle GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Amico_1906 a3ff2e61ffc50ed2c3c7d7329a9a7c14 548 TIGRFAM TIGR01703 hybrid_clust: hydroxylamine reductase 1 547 8.9E-237 T 14-10-2018 IPR010048 Hydroxylamine reductase GO:0005737|GO:0016661|GO:0051536|GO:0055114 KEGG: 00910+1.7.99.1 Amico_1906 a3ff2e61ffc50ed2c3c7d7329a9a7c14 548 Gene3D G3DSA:3.40.50.2030 379 547 4.5E-62 T 14-10-2018 IPR016099 Prismane-like, alpha/beta-sandwich GO:0003824|GO:0055114 KEGG: 00910+1.7.99.1 Amico_0493 723f3922e27e9a657b40439d7cdc4be7 183 Gene3D G3DSA:1.20.1260.10 3 161 1.1E-62 T 14-10-2018 IPR012347 Ferritin-like Amico_0493 723f3922e27e9a657b40439d7cdc4be7 183 SUPERFAMILY SSF47240 13 160 5.35E-30 T 14-10-2018 IPR009078 Ferritin-like superfamily Amico_0493 723f3922e27e9a657b40439d7cdc4be7 183 Pfam PF00210 Ferritin-like domain 21 162 6.9E-20 T 14-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Amico_0493 723f3922e27e9a657b40439d7cdc4be7 183 PIRSF PIRSF018063 1 169 1.0E-67 T 14-10-2018 IPR014490 DNA-binding protein from starved cells-like Amico_1791 40a7097620c0f2d5edc6be598487f043 503 Gene3D G3DSA:3.30.300.310 394 496 2.4E-31 T 14-10-2018 Amico_1791 40a7097620c0f2d5edc6be598487f043 503 ProSitePatterns PS00455 Putative AMP-binding domain signature. 151 162 - T 14-10-2018 IPR020845 AMP-binding, conserved site Amico_1791 40a7097620c0f2d5edc6be598487f043 503 Pfam PF13193 AMP-binding enzyme C-terminal domain 407 482 2.0E-19 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Amico_1791 40a7097620c0f2d5edc6be598487f043 503 Pfam PF00501 AMP-binding enzyme 14 398 1.2E-83 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Amico_1791 40a7097620c0f2d5edc6be598487f043 503 SUPERFAMILY SSF56801 10 495 1.09E-128 T 14-10-2018 Amico_1791 40a7097620c0f2d5edc6be598487f043 503 Gene3D G3DSA:3.40.50.12780 3 389 4.3E-88 T 14-10-2018 Amico_0636 8d65cd2989b6ae6a89c5fd450a268bf2 99 Pfam PF00366 Ribosomal protein S17 13 78 3.9E-28 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0636 8d65cd2989b6ae6a89c5fd450a268bf2 99 Hamap MF_01345_B 30S ribosomal protein S17 [rpsQ]. 8 83 22.01 T 14-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0636 8d65cd2989b6ae6a89c5fd450a268bf2 99 SUPERFAMILY SSF50249 8 87 3.26E-29 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0636 8d65cd2989b6ae6a89c5fd450a268bf2 99 Gene3D G3DSA:2.40.50.140 7 99 3.8E-31 T 14-10-2018 Amico_0636 8d65cd2989b6ae6a89c5fd450a268bf2 99 PRINTS PR00973 Ribosomal protein S17 family signature 69 76 7.9E-8 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0636 8d65cd2989b6ae6a89c5fd450a268bf2 99 PRINTS PR00973 Ribosomal protein S17 family signature 27 50 7.9E-8 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0636 8d65cd2989b6ae6a89c5fd450a268bf2 99 PRINTS PR00973 Ribosomal protein S17 family signature 59 69 7.9E-8 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0636 8d65cd2989b6ae6a89c5fd450a268bf2 99 TIGRFAM TIGR03635 uS17_bact: ribosomal protein uS17 8 78 8.9E-31 T 14-10-2018 IPR019984 30S ribosomal protein S17 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0636 8d65cd2989b6ae6a89c5fd450a268bf2 99 ProDom PD001295 RIBOSOMAL S17 30S RIBONUCLEOPROTEIN RRNA-BINDING RNA-BINDING 40S S11 S17P S11 12 78 3.0E-17 T 14-10-2018 IPR000266 Ribosomal protein S17/S11 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0636 8d65cd2989b6ae6a89c5fd450a268bf2 99 ProSitePatterns PS00056 Ribosomal protein S17 signature. 59 71 - T 14-10-2018 IPR019979 Ribosomal protein S17, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0964 28156239763015e09b82af54b8c787cb 235 Gene3D G3DSA:2.10.109.10 115 229 2.3E-15 T 14-10-2018 Amico_0964 28156239763015e09b82af54b8c787cb 235 SUPERFAMILY SSF47413 2 66 7.24E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Amico_0964 28156239763015e09b82af54b8c787cb 235 SUPERFAMILY SSF51306 85 205 9.94E-18 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Amico_0964 28156239763015e09b82af54b8c787cb 235 SMART SM00530 6 61 1.4E-13 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_0964 28156239763015e09b82af54b8c787cb 235 Pfam PF01381 Helix-turn-helix 8 61 1.2E-10 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_0964 28156239763015e09b82af54b8c787cb 235 Pfam PF00717 Peptidase S24-like 133 203 4.2E-11 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Amico_0964 28156239763015e09b82af54b8c787cb 235 Gene3D G3DSA:1.10.260.40 2 82 6.1E-18 T 14-10-2018 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 PIRSF PIRSF000099 2 418 9.8E-127 T 14-10-2018 IPR022695 Histidinol dehydrogenase, monofunctional GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 Pfam PF00815 Histidinol dehydrogenase 15 415 6.1E-136 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 Gene3D G3DSA:3.40.50.1980 223 338 2.8E-104 T 14-10-2018 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 PRINTS PR00083 Histidinol dehydrogenase signature 350 368 7.4E-69 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 PRINTS PR00083 Histidinol dehydrogenase signature 190 215 7.4E-69 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 PRINTS PR00083 Histidinol dehydrogenase signature 23 47 7.4E-69 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 PRINTS PR00083 Histidinol dehydrogenase signature 125 151 7.4E-69 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 PRINTS PR00083 Histidinol dehydrogenase signature 241 260 7.4E-69 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 PRINTS PR00083 Histidinol dehydrogenase signature 160 186 7.4E-69 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 PRINTS PR00083 Histidinol dehydrogenase signature 219 240 7.4E-69 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 PRINTS PR00083 Histidinol dehydrogenase signature 309 334 7.4E-69 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 SUPERFAMILY SSF53720 30 417 4.32E-54 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 Gene3D G3DSA:3.40.50.1980 20 222 2.8E-104 T 14-10-2018 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 Hamap MF_01024 Histidinol dehydrogenase [hisD]. 2 416 33.856 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Amico_0684 59f902ee1e84188f6070198a7583a91d 419 TIGRFAM TIGR00069 hisD: histidinol dehydrogenase 23 415 3.5E-129 T 14-10-2018 IPR012131 Histidinol dehydrogenase GO:0000105|GO:0004399|GO:0008270|GO:0051287|GO:0055114 KEGG: 00340+1.1.1.23 Amico_0811 2f6498edea0810054b2c9d1634f5c652 300 Hamap MF_01007 Ribosomal RNA small subunit methyltransferase H [rsmH]. 4 299 36.365 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Amico_0811 2f6498edea0810054b2c9d1634f5c652 300 SUPERFAMILY SSF81799 111 217 2.22E-32 T 14-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 Amico_0811 2f6498edea0810054b2c9d1634f5c652 300 TIGRFAM TIGR00006 TIGR00006: 16S rRNA (cytosine(1402)-N(4))-methyltransferase 3 299 2.8E-89 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Amico_0811 2f6498edea0810054b2c9d1634f5c652 300 Pfam PF01795 MraW methylase family 2 298 1.3E-97 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Amico_0811 2f6498edea0810054b2c9d1634f5c652 300 Gene3D G3DSA:3.40.50.150 4 295 4.8E-101 T 14-10-2018 Amico_0811 2f6498edea0810054b2c9d1634f5c652 300 SUPERFAMILY SSF53335 4 298 2.32E-37 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0811 2f6498edea0810054b2c9d1634f5c652 300 Gene3D G3DSA:1.10.150.170 110 220 4.8E-101 T 14-10-2018 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily GO:0008168 Amico_0811 2f6498edea0810054b2c9d1634f5c652 300 PIRSF PIRSF004486 1 300 4.6E-100 T 14-10-2018 IPR002903 Ribosomal RNA small subunit methyltransferase H GO:0008168 Amico_1637 6e2a7c47c946880044b3825788edb970 201 Pfam PF09335 SNARE associated Golgi protein 34 160 3.1E-21 T 14-10-2018 IPR032816 SNARE associated Golgi protein Amico_1563 1db263c04eaace33a0304b700a9f2d3d 553 SUPERFAMILY SSF68923 65 230 4.88E-26 T 14-10-2018 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal GO:0004611|GO:0006094|GO:0017076 Reactome: R-HSA-70263 Amico_1563 1db263c04eaace33a0304b700a9f2d3d 553 SUPERFAMILY SSF53795 233 543 1.83E-60 T 14-10-2018 Amico_1563 1db263c04eaace33a0304b700a9f2d3d 553 Pfam PF01293 Phosphoenolpyruvate carboxykinase 98 476 8.5E-14 T 14-10-2018 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising GO:0004612|GO:0005524|GO:0006094 KEGG: 00010+4.1.1.49|KEGG: 00020+4.1.1.49|KEGG: 00620+4.1.1.49|KEGG: 00710+4.1.1.49|MetaCyc: PWY-561|MetaCyc: PWY-7117 Amico_0836 bedb3dea82816a683daf5b9077bc7b37 270 Pfam PF00121 Triosephosphate isomerase 5 263 3.2E-77 T 14-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0836 bedb3dea82816a683daf5b9077bc7b37 270 TIGRFAM TIGR00419 tim: triose-phosphate isomerase 6 257 2.3E-48 T 14-10-2018 IPR000652 Triosephosphate isomerase GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0836 bedb3dea82816a683daf5b9077bc7b37 270 Hamap MF_00147_B Triosephosphate isomerase [tpiA]. 2 265 49.322 T 14-10-2018 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic GO:0004807|GO:0006096 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0836 bedb3dea82816a683daf5b9077bc7b37 270 Gene3D G3DSA:3.20.20.70 1 266 2.8E-89 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0836 bedb3dea82816a683daf5b9077bc7b37 270 SUPERFAMILY SSF51351 2 265 1.96E-77 T 14-10-2018 IPR035990 Triosephosphate isomerase superfamily GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_0836 bedb3dea82816a683daf5b9077bc7b37 270 ProSitePatterns PS00171 Triosephosphate isomerase active site. 177 187 - T 14-10-2018 IPR020861 Triosephosphate isomerase, active site GO:0004807 KEGG: 00010+5.3.1.1|KEGG: 00051+5.3.1.1|KEGG: 00562+5.3.1.1|KEGG: 00710+5.3.1.1|MetaCyc: PWY-1042|MetaCyc: PWY-5484|MetaCyc: PWY-6142|MetaCyc: PWY-7003|Reactome: R-HSA-70171|Reactome: R-HSA-70263 Amico_1618 a0f0de6d628ba781587237769f5019b3 234 Pfam PF02683 Cytochrome C biogenesis protein transmembrane region 24 229 7.2E-19 T 14-10-2018 IPR003834 Cytochrome C biogenesis protein, transmembrane domain GO:0016020|GO:0017004|GO:0055114 Amico_1280 4918153958ac92d3895b11201536347a 245 Gene3D G3DSA:3.40.50.1220 14 234 1.5E-76 T 14-10-2018 Amico_1280 4918153958ac92d3895b11201536347a 245 Gene3D G3DSA:3.30.1600.10 31 161 1.5E-76 T 14-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily Amico_1280 4918153958ac92d3895b11201536347a 245 Pfam PF02146 Sir2 family 22 191 1.5E-49 T 14-10-2018 IPR003000 Sirtuin family GO:0070403 Amico_1280 4918153958ac92d3895b11201536347a 245 SUPERFAMILY SSF52467 2 239 4.44E-80 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Amico_0380 3b6fc1efb535c40ddf1e1bed7666da11 464 Gene3D G3DSA:1.10.10.10 7 84 8.3E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0380 3b6fc1efb535c40ddf1e1bed7666da11 464 SUPERFAMILY SSF53383 103 455 1.12E-62 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0380 3b6fc1efb535c40ddf1e1bed7666da11 464 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 57 73 6.9E-5 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0380 3b6fc1efb535c40ddf1e1bed7666da11 464 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 43 57 6.9E-5 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0380 3b6fc1efb535c40ddf1e1bed7666da11 464 Pfam PF00155 Aminotransferase class I and II 165 447 2.3E-21 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_0380 3b6fc1efb535c40ddf1e1bed7666da11 464 SUPERFAMILY SSF46785 13 87 1.03E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0380 3b6fc1efb535c40ddf1e1bed7666da11 464 Pfam PF00392 Bacterial regulatory proteins, gntR family 20 83 1.4E-13 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0380 3b6fc1efb535c40ddf1e1bed7666da11 464 Gene3D G3DSA:3.40.640.10 87 448 4.2E-70 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0380 3b6fc1efb535c40ddf1e1bed7666da11 464 SMART SM00345 24 83 3.9E-12 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1698 f86bb5c013c2d5db097cb28af77c2112 491 SUPERFAMILY SSF53649 26 477 1.57E-116 T 14-10-2018 IPR017850 Alkaline-phosphatase-like, core domain superfamily GO:0003824 Amico_1698 f86bb5c013c2d5db097cb28af77c2112 491 SMART SM00098 34 473 1.6E-67 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Amico_1698 f86bb5c013c2d5db097cb28af77c2112 491 PRINTS PR00113 Alkaline phosphatase signature 252 281 2.2E-35 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Amico_1698 f86bb5c013c2d5db097cb28af77c2112 491 PRINTS PR00113 Alkaline phosphatase signature 87 102 2.2E-35 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Amico_1698 f86bb5c013c2d5db097cb28af77c2112 491 PRINTS PR00113 Alkaline phosphatase signature 168 178 2.2E-35 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Amico_1698 f86bb5c013c2d5db097cb28af77c2112 491 PRINTS PR00113 Alkaline phosphatase signature 33 53 2.2E-35 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Amico_1698 f86bb5c013c2d5db097cb28af77c2112 491 PRINTS PR00113 Alkaline phosphatase signature 124 144 2.2E-35 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Amico_1698 f86bb5c013c2d5db097cb28af77c2112 491 ProSitePatterns PS00123 Alkaline phosphatase active site. 87 95 - T 14-10-2018 IPR018299 Alkaline phosphatase, active site GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Amico_1698 f86bb5c013c2d5db097cb28af77c2112 491 Gene3D G3DSA:3.40.720.10 36 447 1.7E-113 T 14-10-2018 IPR017849 Alkaline phosphatase-like, alpha/beta/alpha GO:0003824 Amico_1698 f86bb5c013c2d5db097cb28af77c2112 491 Pfam PF00245 Alkaline phosphatase 36 471 2.1E-86 T 14-10-2018 IPR001952 Alkaline phosphatase GO:0016791 KEGG: 00730+3.1.3.1|KEGG: 00790+3.1.3.1|MetaCyc: PWY-5083|MetaCyc: PWY-5491 Amico_1698 f86bb5c013c2d5db097cb28af77c2112 491 Gene3D G3DSA:1.10.1200.140 367 445 1.7E-113 T 14-10-2018 Amico_1413 2310ee376a37797ce6704baaedef8365 261 Pfam PF02649 Type I GTP cyclohydrolase folE2 1 249 3.8E-90 T 14-10-2018 IPR003801 GTP cyclohydrolase FolE2/MptA GO:0003933 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 Amico_1413 2310ee376a37797ce6704baaedef8365 261 Hamap MF_01527_B GTP cyclohydrolase FolE2 [folE2]. 1 254 34.911 T 14-10-2018 IPR022838 GTP cyclohydrolase FolE2 GO:0003934|GO:0035998 KEGG: 00790+3.5.4.16|MetaCyc: PWY-5663|MetaCyc: PWY-5664|MetaCyc: PWY-6147|MetaCyc: PWY-6703|MetaCyc: PWY-6983|MetaCyc: PWY-7442|MetaCyc: PWY-7852 Amico_1413 2310ee376a37797ce6704baaedef8365 261 Gene3D G3DSA:3.10.270.10 1 253 1.1E-90 T 14-10-2018 Amico_1524 8207074b50b19d23c053d472801edcf0 500 Gene3D G3DSA:3.40.50.300 186 494 2.9E-52 T 14-10-2018 Amico_1524 8207074b50b19d23c053d472801edcf0 500 Pfam PF01078 Magnesium chelatase, subunit ChlI 186 387 2.9E-82 T 14-10-2018 IPR000523 Magnesium chelatase ChlI domain Amico_1524 8207074b50b19d23c053d472801edcf0 500 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 335 347 2.7E-6 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 Amico_1524 8207074b50b19d23c053d472801edcf0 500 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 283 297 2.7E-6 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 Amico_1524 8207074b50b19d23c053d472801edcf0 500 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 205 220 2.7E-6 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 Amico_1524 8207074b50b19d23c053d472801edcf0 500 PRINTS PR01657 Mini-chromosome maintenance (MCM) protein family signature 311 324 2.7E-6 T 14-10-2018 IPR001208 MCM domain GO:0003677|GO:0005524|GO:0006270 Amico_1524 8207074b50b19d23c053d472801edcf0 500 SUPERFAMILY SSF54211 6 165 1.93E-27 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_1524 8207074b50b19d23c053d472801edcf0 500 Pfam PF13335 Magnesium chelatase, subunit ChlI C-terminal 398 494 3.7E-27 T 14-10-2018 IPR025158 Mg chelatase-related protein, C-terminal domain Amico_1524 8207074b50b19d23c053d472801edcf0 500 SMART SM00382 206 386 3.1E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1524 8207074b50b19d23c053d472801edcf0 500 Pfam PF13541 Subunit ChlI of Mg-chelatase 19 137 1.3E-35 T 14-10-2018 Amico_1524 8207074b50b19d23c053d472801edcf0 500 SUPERFAMILY SSF52540 183 493 6.42E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1524 8207074b50b19d23c053d472801edcf0 500 TIGRFAM TIGR00368 TIGR00368: Mg chelatase-like protein 4 494 1.5E-151 T 14-10-2018 IPR004482 Mg chelatase-related protein Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 Gene3D G3DSA:2.40.37.10 222 374 1.6E-53 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 Pfam PF00842 Alanine racemase, C-terminal domain 243 371 6.3E-42 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 SUPERFAMILY SSF50621 238 373 6.63E-43 T 14-10-2018 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal GO:0003824 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 SUPERFAMILY SSF51419 10 239 3.49E-57 T 14-10-2018 IPR029066 PLP-binding barrel Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 SMART SM01005 243 372 4.7E-57 T 14-10-2018 IPR011079 Alanine racemase, C-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 Gene3D G3DSA:3.20.20.10 12 221 1.0E-61 T 14-10-2018 IPR029066 PLP-binding barrel Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 TIGRFAM TIGR00492 alr: alanine racemase 6 372 8.5E-95 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 Pfam PF01168 Alanine racemase, N-terminal domain 10 230 2.0E-57 T 14-10-2018 IPR001608 Alanine racemase, N-terminal KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 Hamap MF_01201 Alanine racemase. 3 372 31.24 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 PRINTS PR00992 Alanine racemase signature 203 230 3.6E-43 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 PRINTS PR00992 Alanine racemase signature 259 274 3.6E-43 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 PRINTS PR00992 Alanine racemase signature 65 83 3.6E-43 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 PRINTS PR00992 Alanine racemase signature 29 45 3.6E-43 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 PRINTS PR00992 Alanine racemase signature 298 315 3.6E-43 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 PRINTS PR00992 Alanine racemase signature 126 138 3.6E-43 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0212 3a0ae73120e167baf9d8cee048b82cb4 374 PRINTS PR00992 Alanine racemase signature 160 171 3.6E-43 T 14-10-2018 IPR000821 Alanine racemase GO:0006522|GO:0008784 KEGG: 00473+5.1.1.1|MetaCyc: PWY-7383 Amico_0704 f1c1899bfc86174c70903c18eb320a39 178 Pfam PF00707 Translation initiation factor IF-3, C-terminal domain 72 155 2.1E-33 T 14-10-2018 IPR019815 Translation initiation factor 3, C-terminal GO:0006413 Reactome: R-HSA-5368286 Amico_0704 f1c1899bfc86174c70903c18eb320a39 178 Pfam PF05198 Translation initiation factor IF-3, N-terminal domain 2 64 2.2E-26 T 14-10-2018 IPR019814 Translation initiation factor 3, N-terminal GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Amico_0704 f1c1899bfc86174c70903c18eb320a39 178 ProSitePatterns PS00938 Initiation factor 3 signature. 46 59 - T 14-10-2018 IPR019813 Translation initiation factor 3, conserved site GO:0003743|GO:0006413 Amico_0704 f1c1899bfc86174c70903c18eb320a39 178 SUPERFAMILY SSF55200 73 155 6.8E-30 T 14-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 Amico_0704 f1c1899bfc86174c70903c18eb320a39 178 Hamap MF_00080 Translation initiation factor IF-3 [infC]. 1 158 24.747 T 14-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Amico_0704 f1c1899bfc86174c70903c18eb320a39 178 Gene3D G3DSA:3.10.20.80 1 63 5.5E-27 T 14-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Amico_0704 f1c1899bfc86174c70903c18eb320a39 178 Gene3D G3DSA:3.30.110.10 64 157 1.3E-33 T 14-10-2018 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily GO:0006413 Reactome: R-HSA-5368286 Amico_0704 f1c1899bfc86174c70903c18eb320a39 178 SUPERFAMILY SSF54364 2 66 1.14E-23 T 14-10-2018 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Amico_0704 f1c1899bfc86174c70903c18eb320a39 178 TIGRFAM TIGR00168 infC: translation initiation factor IF-3 2 155 1.4E-57 T 14-10-2018 IPR001288 Translation initiation factor 3 GO:0003743|GO:0006413 Reactome: R-HSA-5368286 Amico_0382 bc2bed4cd44e85074baae349c1cb8b87 219 Pfam PF07729 FCD domain 82 206 4.7E-25 T 14-10-2018 IPR011711 GntR, C-terminal Amico_0382 bc2bed4cd44e85074baae349c1cb8b87 219 SUPERFAMILY SSF48008 78 211 1.15E-25 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_0382 bc2bed4cd44e85074baae349c1cb8b87 219 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 46 62 6.0E-6 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0382 bc2bed4cd44e85074baae349c1cb8b87 219 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 32 46 6.0E-6 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0382 bc2bed4cd44e85074baae349c1cb8b87 219 SMART SM00895 82 207 1.8E-19 T 14-10-2018 IPR011711 GntR, C-terminal Amico_0382 bc2bed4cd44e85074baae349c1cb8b87 219 SUPERFAMILY SSF46785 10 99 2.01E-19 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0382 bc2bed4cd44e85074baae349c1cb8b87 219 Gene3D G3DSA:1.20.120.530 76 214 1.4E-28 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_0382 bc2bed4cd44e85074baae349c1cb8b87 219 Gene3D G3DSA:1.10.10.10 7 72 5.5E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0382 bc2bed4cd44e85074baae349c1cb8b87 219 SMART SM00345 14 72 2.6E-20 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0382 bc2bed4cd44e85074baae349c1cb8b87 219 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 71 2.1E-20 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1716 44878b559dd022dd6ba6a8278c8ae738 376 Gene3D G3DSA:3.40.640.10 1 252 3.7E-88 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1716 44878b559dd022dd6ba6a8278c8ae738 376 Gene3D G3DSA:3.90.1150.10 254 375 5.5E-41 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1716 44878b559dd022dd6ba6a8278c8ae738 376 PIRSF PIRSF000390 6 375 7.6E-107 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Amico_1716 44878b559dd022dd6ba6a8278c8ae738 376 SUPERFAMILY SSF53383 22 373 5.91E-106 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1716 44878b559dd022dd6ba6a8278c8ae738 376 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 23 370 4.2E-99 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Amico_0613 a0cd358279472f9016b3f1702769e2b1 246 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 118 124 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Amico_0613 a0cd358279472f9016b3f1702769e2b1 246 Gene3D G3DSA:3.40.50.150 7 245 4.0E-61 T 14-10-2018 Amico_0613 a0cd358279472f9016b3f1702769e2b1 246 Pfam PF13847 Methyltransferase domain 43 168 7.4E-19 T 14-10-2018 IPR025714 Methyltransferase domain Amico_0613 a0cd358279472f9016b3f1702769e2b1 246 SUPERFAMILY SSF53335 30 201 2.05E-32 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_1230 c14755d0fb1f973a77312850cb686c10 156 Pfam PF14437 MafB19-like deaminase 10 150 1.9E-33 T 14-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Amico_1230 c14755d0fb1f973a77312850cb686c10 156 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 54 91 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Amico_1230 c14755d0fb1f973a77312850cb686c10 156 Gene3D G3DSA:3.40.140.10 1 155 3.6E-59 T 14-10-2018 Amico_1230 c14755d0fb1f973a77312850cb686c10 156 Hamap MF_00972 tRNA-specific adenosine deaminase [tadA]. 11 150 43.836 T 14-10-2018 IPR028883 tRNA-specific adenosine deaminase GO:0002100|GO:0008251 Reactome: R-HSA-6782315 Amico_1230 c14755d0fb1f973a77312850cb686c10 156 SUPERFAMILY SSF53927 4 151 1.0E-53 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Amico_0113 6a9f045e3b554865c7ab59ad4b69f501 345 Gene3D G3DSA:3.10.520.20 23 343 2.7E-115 T 14-10-2018 Amico_0113 6a9f045e3b554865c7ab59ad4b69f501 345 SUPERFAMILY SSF143631 31 332 3.92E-98 T 14-10-2018 IPR003374 ApbE-like superfamily Amico_0113 6a9f045e3b554865c7ab59ad4b69f501 345 Pfam PF02424 ApbE family 38 314 7.6E-88 T 14-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Amico_0113 6a9f045e3b554865c7ab59ad4b69f501 345 PIRSF PIRSF006268 1 337 3.3E-112 T 14-10-2018 IPR024932 Flavin transferase ApbE GO:0017013 Amico_0596 38fd5b1b0f83161702dbc33ecc255238 554 Pfam PF01368 DHH family 87 182 6.5E-8 T 14-10-2018 IPR001667 DDH domain KEGG: 00190+3.6.1.1|MetaCyc: PWY-7805|MetaCyc: PWY-7807 Amico_0596 38fd5b1b0f83161702dbc33ecc255238 554 Gene3D G3DSA:3.90.1640.30 65 322 6.7E-65 T 14-10-2018 Amico_0596 38fd5b1b0f83161702dbc33ecc255238 554 SUPERFAMILY SSF64182 78 438 5.49E-79 T 14-10-2018 IPR038763 DHH phosphoesterase superfamily Amico_0596 38fd5b1b0f83161702dbc33ecc255238 554 Pfam PF02272 DHHA1 domain 320 435 6.6E-8 T 14-10-2018 IPR003156 DHHA1 domain GO:0003676 KEGG: 00970+6.1.1.7|Reactome: R-HSA-379716 Amico_0596 38fd5b1b0f83161702dbc33ecc255238 554 Gene3D G3DSA:3.10.310.30 323 440 1.1E-20 T 14-10-2018 Amico_1612 572d5b4989fa34ec2c1b6a3e54eddd0b 388 PIRSF PIRSF037226 1 388 2.5E-124 T 14-10-2018 IPR017144 Peptidase M20A, amidohydrolase, predicted Amico_1612 572d5b4989fa34ec2c1b6a3e54eddd0b 388 Gene3D G3DSA:3.40.630.10 24 362 1.9E-117 T 14-10-2018 Amico_1612 572d5b4989fa34ec2c1b6a3e54eddd0b 388 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 31 346 2.4E-56 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_1612 572d5b4989fa34ec2c1b6a3e54eddd0b 388 Pfam PF07687 Peptidase dimerisation domain 174 259 2.9E-9 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1612 572d5b4989fa34ec2c1b6a3e54eddd0b 388 Gene3D G3DSA:3.30.70.360 169 286 1.9E-117 T 14-10-2018 Amico_1612 572d5b4989fa34ec2c1b6a3e54eddd0b 388 SUPERFAMILY SSF53187 10 374 5.11E-51 T 14-10-2018 Amico_1612 572d5b4989fa34ec2c1b6a3e54eddd0b 388 SUPERFAMILY SSF55031 171 276 1.83E-21 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1612 572d5b4989fa34ec2c1b6a3e54eddd0b 388 Pfam PF01546 Peptidase family M20/M25/M40 85 369 3.8E-9 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_0753 1b96d8bd05711ae21e8c6c92a366bb95 706 TIGRFAM TIGR00277 HDIG: HDIG domain 470 568 1.0E-23 T 14-10-2018 IPR006675 HDIG domain Amico_0753 1b96d8bd05711ae21e8c6c92a366bb95 706 Pfam PF07697 7TM-HD extracellular 63 249 3.1E-17 T 14-10-2018 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain Amico_0753 1b96d8bd05711ae21e8c6c92a366bb95 706 SMART SM00471 469 624 5.1E-8 T 14-10-2018 IPR003607 HD/PDEase domain Amico_0753 1b96d8bd05711ae21e8c6c92a366bb95 706 SUPERFAMILY SSF109604 470 615 3.4E-15 T 14-10-2018 Amico_0753 1b96d8bd05711ae21e8c6c92a366bb95 706 Gene3D G3DSA:1.10.3210.10 460 654 4.5E-20 T 14-10-2018 Amico_0753 1b96d8bd05711ae21e8c6c92a366bb95 706 Pfam PF01966 HD domain 473 614 9.5E-18 T 14-10-2018 IPR006674 HD domain Amico_1900 7509fedbc0f56fcf31be28d15db88206 423 Gene3D G3DSA:3.90.1150.10 7 387 7.5E-178 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1900 7509fedbc0f56fcf31be28d15db88206 423 Hamap MF_00051 Serine hydroxymethyltransferase [glyA]. 3 410 49.655 T 14-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Amico_1900 7509fedbc0f56fcf31be28d15db88206 423 SUPERFAMILY SSF53383 6 409 1.32E-168 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1900 7509fedbc0f56fcf31be28d15db88206 423 PIRSF PIRSF000412 1 416 2.5E-161 T 14-10-2018 IPR001085 Serine hydroxymethyltransferase GO:0004372|GO:0019264|GO:0030170|GO:0035999 KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Amico_1900 7509fedbc0f56fcf31be28d15db88206 423 Pfam PF00464 Serine hydroxymethyltransferase 7 379 8.2E-166 T 14-10-2018 IPR039429 Serine hydroxymethyltransferase-like domain KEGG: 00260+2.1.2.1|KEGG: 00460+2.1.2.1|KEGG: 00630+2.1.2.1|KEGG: 00670+2.1.2.1|KEGG: 00680+2.1.2.1|MetaCyc: PWY-1622|MetaCyc: PWY-181|MetaCyc: PWY-2161|MetaCyc: PWY-2201|MetaCyc: PWY-3661|MetaCyc: PWY-3661-1|MetaCyc: PWY-3841|MetaCyc: PWY-5497|Reactome: R-HSA-196757 Amico_1900 7509fedbc0f56fcf31be28d15db88206 423 Gene3D G3DSA:3.40.640.10 33 283 7.5E-178 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1050 ae6eb6e9ec52ac286cb004764da8ae72 310 SUPERFAMILY SSF52540 101 304 1.95E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1050 ae6eb6e9ec52ac286cb004764da8ae72 310 Pfam PF02881 SRP54-type protein, helical bundle domain 20 78 6.4E-13 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Amico_1050 ae6eb6e9ec52ac286cb004764da8ae72 310 SMART SM00963 7 87 1.8E-15 T 14-10-2018 IPR013822 Signal recognition particle, SRP54 subunit, helical bundle GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Amico_1050 ae6eb6e9ec52ac286cb004764da8ae72 310 TIGRFAM TIGR00064 ftsY: signal recognition particle-docking protein FtsY 31 303 7.5E-100 T 14-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Amico_1050 ae6eb6e9ec52ac286cb004764da8ae72 310 SUPERFAMILY SSF47364 3 80 3.79E-17 T 14-10-2018 IPR036225 SRP/SRP receptor, N-terminal Reactome: R-HSA-1799339 Amico_1050 ae6eb6e9ec52ac286cb004764da8ae72 310 Hamap MF_00920 Signal recognition particle receptor FtsY [ftsY]. 30 304 57.467 T 14-10-2018 IPR004390 Signal-recognition particle receptor FtsY GO:0006614 Amico_1050 ae6eb6e9ec52ac286cb004764da8ae72 310 SMART SM00962 103 304 2.2E-104 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Amico_1050 ae6eb6e9ec52ac286cb004764da8ae72 310 SMART SM00382 102 302 6.1E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1050 ae6eb6e9ec52ac286cb004764da8ae72 310 Gene3D G3DSA:1.20.120.140 5 302 1.2E-102 T 14-10-2018 Amico_1050 ae6eb6e9ec52ac286cb004764da8ae72 310 Pfam PF00448 SRP54-type protein, GTPase domain 103 303 5.4E-75 T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Amico_1050 ae6eb6e9ec52ac286cb004764da8ae72 310 Gene3D G3DSA:3.40.50.300 103 292 1.2E-102 T 14-10-2018 Amico_1050 ae6eb6e9ec52ac286cb004764da8ae72 310 ProSitePatterns PS00300 SRP54-type proteins GTP-binding domain signature. 277 290 - T 14-10-2018 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain GO:0005525|GO:0006614 Reactome: R-HSA-1799339 Amico_0645 969a35eac79e38ddaa01c9e95498e7bb 61 ProSitePatterns PS00634 Ribosomal protein L30 signature. 22 54 - T 14-10-2018 IPR018038 Ribosomal protein L30, conserved site Amico_0645 969a35eac79e38ddaa01c9e95498e7bb 61 PIRSF PIRSF002211 1 60 2.5E-26 T 14-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0645 969a35eac79e38ddaa01c9e95498e7bb 61 Gene3D G3DSA:3.30.1390.20 1 60 5.4E-27 T 14-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily Amico_0645 969a35eac79e38ddaa01c9e95498e7bb 61 SUPERFAMILY SSF55129 1 58 1.05E-20 T 14-10-2018 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily Amico_0645 969a35eac79e38ddaa01c9e95498e7bb 61 TIGRFAM TIGR01308 rpmD_bact: ribosomal protein uL30 4 55 2.7E-23 T 14-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0645 969a35eac79e38ddaa01c9e95498e7bb 61 Hamap MF_01371_B 50S ribosomal protein L30 [rpmD]. 1 58 18.465 T 14-10-2018 IPR005996 Ribosomal protein L30, bacterial-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0645 969a35eac79e38ddaa01c9e95498e7bb 61 Pfam PF00327 Ribosomal protein L30p/L7e 4 54 2.7E-18 T 14-10-2018 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain Amico_1178 2c3b6f2ba8890de920a4414954709480 293 Gene3D G3DSA:3.40.50.300 1 203 3.5E-45 T 14-10-2018 Amico_1178 2c3b6f2ba8890de920a4414954709480 293 TIGRFAM TIGR00152 TIGR00152: dephospho-CoA kinase 3 182 2.5E-32 T 14-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Amico_1178 2c3b6f2ba8890de920a4414954709480 293 Hamap MF_00376 Dephospho-CoA kinase [coaE]. 1 192 20.6 T 14-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Amico_1178 2c3b6f2ba8890de920a4414954709480 293 SUPERFAMILY SSF52540 2 184 3.71E-24 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1178 2c3b6f2ba8890de920a4414954709480 293 Pfam PF01121 Dephospho-CoA kinase 2 175 5.9E-36 T 14-10-2018 IPR001977 Dephospho-CoA kinase GO:0004140|GO:0005524|GO:0015937 KEGG: 00770+2.7.1.24|MetaCyc: PWY-7851 Amico_1777 895fd1ca0d7ac506e67dfe94cf53ca3a 552 Gene3D G3DSA:3.40.190.10 331 551 3.2E-48 T 14-10-2018 Amico_1777 895fd1ca0d7ac506e67dfe94cf53ca3a 552 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 399 547 1.5E-27 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain Amico_1777 895fd1ca0d7ac506e67dfe94cf53ca3a 552 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 29 254 5.9E-30 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain Amico_1777 895fd1ca0d7ac506e67dfe94cf53ca3a 552 PIRSF PIRSF002741 344 551 1.4E-32 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Amico_1777 895fd1ca0d7ac506e67dfe94cf53ca3a 552 PIRSF PIRSF002741 26 347 6.3E-41 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Amico_1777 895fd1ca0d7ac506e67dfe94cf53ca3a 552 Gene3D G3DSA:3.10.105.10 85 319 5.1E-56 T 14-10-2018 Amico_1777 895fd1ca0d7ac506e67dfe94cf53ca3a 552 SUPERFAMILY SSF53850 27 340 2.67E-57 T 14-10-2018 Amico_1777 895fd1ca0d7ac506e67dfe94cf53ca3a 552 SUPERFAMILY SSF53850 354 548 1.43E-43 T 14-10-2018 Amico_1777 895fd1ca0d7ac506e67dfe94cf53ca3a 552 Gene3D G3DSA:3.40.190.10 28 330 5.1E-56 T 14-10-2018 Amico_0512 53b93c88c5b14749436c579a5609ee7d 429 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 326 399 1.2E-16 T 14-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Amico_0512 53b93c88c5b14749436c579a5609ee7d 429 SUPERFAMILY SSF52518 60 308 2.06E-55 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_0512 53b93c88c5b14749436c579a5609ee7d 429 Gene3D G3DSA:3.40.50.920 315 428 9.4E-24 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_0512 53b93c88c5b14749436c579a5609ee7d 429 Gene3D G3DSA:3.40.50.970 47 245 2.0E-60 T 14-10-2018 Amico_0512 53b93c88c5b14749436c579a5609ee7d 429 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 71 259 9.3E-53 T 14-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Amico_0512 53b93c88c5b14749436c579a5609ee7d 429 SUPERFAMILY SSF52922 318 427 1.24E-20 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_0947 91118770a81d7a9057b1004c568a477d 311 Pfam PF00589 Phage integrase family 118 282 5.0E-30 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Amico_0947 91118770a81d7a9057b1004c568a477d 311 Gene3D G3DSA:1.10.150.130 10 111 1.6E-8 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal Amico_0947 91118770a81d7a9057b1004c568a477d 311 Gene3D G3DSA:1.10.443.10 112 304 9.7E-37 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Amico_0947 91118770a81d7a9057b1004c568a477d 311 SUPERFAMILY SSF56349 14 288 9.42E-50 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Amico_1441 1bbd10759318942ca2af7553683a899d 607 SUPERFAMILY SSF53067 162 352 2.12E-63 T 14-10-2018 Amico_1441 1bbd10759318942ca2af7553683a899d 607 Gene3D G3DSA:3.30.420.40 95 347 1.3E-112 T 14-10-2018 Amico_1441 1bbd10759318942ca2af7553683a899d 607 Hamap MF_00332 Chaperone protein DnaK [dnaK]. 1 604 34.707 T 14-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 Amico_1441 1bbd10759318942ca2af7553683a899d 607 Pfam PF00012 Hsp70 protein 79 573 1.2E-206 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 Pfam PF00012 Hsp70 protein 4 76 8.4E-28 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 Gene3D G3DSA:3.30.420.40 160 333 1.3E-112 T 14-10-2018 Amico_1441 1bbd10759318942ca2af7553683a899d 607 PRINTS PR00301 70kDa heat shock protein signature 359 378 3.4E-75 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 PRINTS PR00301 70kDa heat shock protein signature 31 43 3.4E-75 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 PRINTS PR00301 70kDa heat shock protein signature 440 456 3.4E-75 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 PRINTS PR00301 70kDa heat shock protein signature 336 356 3.4E-75 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 PRINTS PR00301 70kDa heat shock protein signature 3 16 3.4E-75 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 PRINTS PR00301 70kDa heat shock protein signature 114 134 3.4E-75 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 PRINTS PR00301 70kDa heat shock protein signature 54 62 3.4E-75 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 PRINTS PR00301 70kDa heat shock protein signature 173 183 3.4E-75 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 PRINTS PR00301 70kDa heat shock protein signature 305 321 3.4E-75 T 14-10-2018 IPR013126 Heat shock protein 70 family Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 ProSitePatterns PS00297 Heat shock hsp70 proteins family signature 1. 7 14 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 Gene3D G3DSA:3.30.420.40 1 76 5.6E-25 T 14-10-2018 Amico_1441 1bbd10759318942ca2af7553683a899d 607 ProSitePatterns PS00329 Heat shock hsp70 proteins family signature 2. 167 180 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 Gene3D G3DSA:2.60.34.10 348 476 1.2E-57 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 SUPERFAMILY SSF53067 1 158 5.83E-56 T 14-10-2018 Amico_1441 1bbd10759318942ca2af7553683a899d 607 TIGRFAM TIGR02350 prok_dnaK: chaperone protein DnaK 3 573 7.5E-267 T 14-10-2018 IPR012725 Chaperone DnaK GO:0005524|GO:0006457|GO:0051082 Reactome: R-HSA-1268020|Reactome: R-HSA-3371453|Reactome: R-HSA-8949613|Reactome: R-HSA-8950505 Amico_1441 1bbd10759318942ca2af7553683a899d 607 Gene3D G3DSA:3.30.30.30 77 94 1.3E-112 T 14-10-2018 Amico_1441 1bbd10759318942ca2af7553683a899d 607 ProSitePatterns PS01036 Heat shock hsp70 proteins family signature 3. 308 322 - T 14-10-2018 IPR018181 Heat shock protein 70, conserved site Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 SUPERFAMILY SSF100934 477 575 1.83E-13 T 14-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 Gene3D G3DSA:3.90.640.10 199 286 1.3E-112 T 14-10-2018 Amico_1441 1bbd10759318942ca2af7553683a899d 607 SUPERFAMILY SSF100920 355 510 2.35E-57 T 14-10-2018 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily Reactome: R-HSA-3371453 Amico_1441 1bbd10759318942ca2af7553683a899d 607 Gene3D G3DSA:1.20.1270.10 477 577 3.4E-23 T 14-10-2018 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily Reactome: R-HSA-3371453 Amico_1005 78c995023bf2ce67b57105e95ac7930f 236 SUPERFAMILY SSF53335 15 203 1.27E-28 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_1005 78c995023bf2ce67b57105e95ac7930f 236 Pfam PF13649 Methyltransferase domain 42 136 9.5E-11 T 14-10-2018 Amico_1005 78c995023bf2ce67b57105e95ac7930f 236 Gene3D G3DSA:3.40.50.150 4 229 2.8E-27 T 14-10-2018 Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 Gene3D G3DSA:3.40.50.2300 103 310 7.8E-16 T 14-10-2018 Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 Pfam PF01966 HD domain 699 821 1.1E-19 T 14-10-2018 IPR006674 HD domain Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 Gene3D G3DSA:3.30.450.20 374 499 8.5E-17 T 14-10-2018 Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 SUPERFAMILY SSF109604 674 861 2.11E-39 T 14-10-2018 Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 Gene3D G3DSA:1.10.3210.10 673 866 2.1E-65 T 14-10-2018 Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 Pfam PF13188 PAS domain 389 450 1.1E-9 T 14-10-2018 IPR000014 PAS domain Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 TIGRFAM TIGR00277 HDIG: HDIG domain 697 789 2.9E-7 T 14-10-2018 IPR006675 HDIG domain Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 SMART SM00091 387 455 0.0015 T 14-10-2018 IPR000014 PAS domain Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 Gene3D G3DSA:3.40.50.2300 154 325 7.8E-16 T 14-10-2018 Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 SMART SM00471 695 830 1.6E-10 T 14-10-2018 IPR003607 HD/PDEase domain Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 SUPERFAMILY SSF55785 374 499 9.07E-16 T 14-10-2018 IPR035965 PAS domain superfamily Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 388 508 9.2E-15 T 14-10-2018 IPR000014 PAS domain Amico_0534 82549f81ebd73eda9e0e1383b21a7efb 870 Pfam PF04392 ABC transporter substrate binding protein 103 327 5.7E-11 T 14-10-2018 IPR007487 ABC transporter, substrate-binding protein Amico_0026 97ab577760aa1b560ef703038869c44c 255 Pfam PF01522 Polysaccharide deacetylase 50 186 1.7E-22 T 14-10-2018 IPR002509 NodB homology domain GO:0005975|GO:0016810 Amico_0026 97ab577760aa1b560ef703038869c44c 255 SUPERFAMILY SSF88713 37 252 1.01E-36 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Amico_0026 97ab577760aa1b560ef703038869c44c 255 Gene3D G3DSA:3.20.20.370 39 253 2.2E-39 T 14-10-2018 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 TIGRFAM TIGR00396 leuS_bact: leucine--tRNA ligase 3 578 1.9E-265 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 Pfam PF09334 tRNA synthetases class I (M) 39 180 1.3E-20 T 14-10-2018 IPR015413 Methionyl/Leucyl tRNA synthetase GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 40 51 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 SUPERFAMILY SSF47323 626 827 8.97E-33 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 Gene3D G3DSA:3.10.20.590 765 828 3.9E-19 T 14-10-2018 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 Gene3D G3DSA:3.90.740.10 227 419 8.8E-260 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 Gene3D G3DSA:1.10.730.10 623 744 4.6E-14 T 14-10-2018 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 421 622 1.0E-24 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 Pfam PF13603 Leucyl-tRNA synthetase, Domain 2 220 406 7.1E-71 T 14-10-2018 IPR025709 Leucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 KEGG: 00970+6.1.1.4 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 PRINTS PR00985 Leucyl-tRNA synthetase signature 531 553 2.6E-49 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 PRINTS PR00985 Leucyl-tRNA synthetase signature 151 167 2.6E-49 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 PRINTS PR00985 Leucyl-tRNA synthetase signature 564 574 2.6E-49 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 PRINTS PR00985 Leucyl-tRNA synthetase signature 125 142 2.6E-49 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 PRINTS PR00985 Leucyl-tRNA synthetase signature 184 197 2.6E-49 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 PRINTS PR00985 Leucyl-tRNA synthetase signature 214 233 2.6E-49 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 PRINTS PR00985 Leucyl-tRNA synthetase signature 492 510 2.6E-49 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 SUPERFAMILY SSF50677 225 418 4.5E-47 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 SUPERFAMILY SSF52374 1 630 1.19E-153 T 14-10-2018 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 Hamap MF_00049_B Leucine--tRNA ligase [leuS]. 2 826 22.948 T 14-10-2018 IPR002302 Leucine-tRNA ligase GO:0000166|GO:0004823|GO:0005524|GO:0006429 KEGG: 00970+6.1.1.4|Reactome: R-HSA-379726 Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 Gene3D G3DSA:3.40.50.620 32 578 8.8E-260 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0688 2598307adb3fa00774bffa7c45b7f34e 828 Pfam PF08264 Anticodon-binding domain of tRNA 668 787 6.4E-19 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Amico_1487 b120c09348c17efd20321c102ff94c63 350 SUPERFAMILY SSF53756 1 346 5.65E-71 T 14-10-2018 Amico_1487 b120c09348c17efd20321c102ff94c63 350 Pfam PF00534 Glycosyl transferases group 1 168 319 1.6E-34 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Amico_1487 b120c09348c17efd20321c102ff94c63 350 Pfam PF13439 Glycosyltransferase Family 4 21 153 3.9E-17 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Amico_1487 b120c09348c17efd20321c102ff94c63 350 Gene3D G3DSA:3.40.50.2000 151 332 4.3E-61 T 14-10-2018 Amico_1487 b120c09348c17efd20321c102ff94c63 350 Gene3D G3DSA:3.40.50.2000 21 340 4.3E-61 T 14-10-2018 Amico_0858 fbae4562d5c847ec1de6ca93117656ac 334 TIGRFAM TIGR00247 TIGR00247: conserved hypothetical protein, YceG family 12 326 7.7E-56 T 14-10-2018 IPR003770 Endolytic murein transglycosylase Amico_0858 fbae4562d5c847ec1de6ca93117656ac 334 Gene3D G3DSA:3.30.160.60 301 334 6.8E-6 T 14-10-2018 Amico_0858 fbae4562d5c847ec1de6ca93117656ac 334 Hamap MF_02065 Endolytic murein transglycosylase [mltG]. 9 333 25.424 T 14-10-2018 IPR003770 Endolytic murein transglycosylase Amico_0858 fbae4562d5c847ec1de6ca93117656ac 334 Pfam PF02618 YceG-like family 44 328 2.7E-64 T 14-10-2018 IPR003770 Endolytic murein transglycosylase Amico_1301 453e38c24fdd85c3b0b4ddaab97e8669 331 SUPERFAMILY SSF53659 2 331 8.06E-124 T 14-10-2018 Amico_1301 453e38c24fdd85c3b0b4ddaab97e8669 331 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 4 327 5.7E-104 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Amico_1301 453e38c24fdd85c3b0b4ddaab97e8669 331 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 223 242 - T 14-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Amico_1301 453e38c24fdd85c3b0b4ddaab97e8669 331 Gene3D G3DSA:3.40.718.10 1 331 6.2E-141 T 14-10-2018 Amico_1301 453e38c24fdd85c3b0b4ddaab97e8669 331 SMART SM01329 3 327 7.5E-175 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Amico_1592 10b4792ce89f13cf097d8fd358e82666 209 Gene3D G3DSA:1.20.120.530 72 209 6.3E-21 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1592 10b4792ce89f13cf097d8fd358e82666 209 SUPERFAMILY SSF48008 76 207 2.88E-23 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1592 10b4792ce89f13cf097d8fd358e82666 209 SMART SM00345 10 68 7.3E-12 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1592 10b4792ce89f13cf097d8fd358e82666 209 Pfam PF00392 Bacterial regulatory proteins, gntR family 10 66 2.6E-15 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1592 10b4792ce89f13cf097d8fd358e82666 209 SMART SM00895 78 202 1.4E-10 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1592 10b4792ce89f13cf097d8fd358e82666 209 Gene3D G3DSA:1.10.10.10 3 68 2.2E-17 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1592 10b4792ce89f13cf097d8fd358e82666 209 SUPERFAMILY SSF46785 4 72 3.49E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1592 10b4792ce89f13cf097d8fd358e82666 209 Pfam PF07729 FCD domain 78 200 7.3E-22 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1592 10b4792ce89f13cf097d8fd358e82666 209 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 42 58 1.5E-5 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1592 10b4792ce89f13cf097d8fd358e82666 209 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 28 42 1.5E-5 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_1084 7160e4ec8eda4c47df3c766198af2385 185 Gene3D G3DSA:3.30.63.10 30 89 2.0E-69 T 14-10-2018 Amico_1084 7160e4ec8eda4c47df3c766198af2385 185 SUPERFAMILY SSF52540 1 181 1.41E-66 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1084 7160e4ec8eda4c47df3c766198af2385 185 Gene3D G3DSA:3.40.50.300 3 176 2.0E-69 T 14-10-2018 Amico_1084 7160e4ec8eda4c47df3c766198af2385 185 Hamap MF_00328 Guanylate kinase [gmk]. 1 180 35.371 T 14-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 Amico_1084 7160e4ec8eda4c47df3c766198af2385 185 ProSitePatterns PS00856 Guanylate kinase-like signature. 33 50 - T 14-10-2018 IPR020590 Guanylate kinase, conserved site KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221 Amico_1084 7160e4ec8eda4c47df3c766198af2385 185 SMART SM00072 1 180 1.2E-64 T 14-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Amico_1084 7160e4ec8eda4c47df3c766198af2385 185 TIGRFAM TIGR03263 guanyl_kin: guanylate kinase 1 177 1.3E-73 T 14-10-2018 IPR017665 Guanylate kinase GO:0004385|GO:0006163 KEGG: 00230+2.7.4.8|MetaCyc: PWY-7221|Reactome: R-HSA-2161541|Reactome: R-HSA-499943 Amico_1084 7160e4ec8eda4c47df3c766198af2385 185 Pfam PF00625 Guanylate kinase 2 178 2.9E-48 T 14-10-2018 IPR008145 Guanylate kinase/L-type calcium channel beta subunit Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 Pfam PF02151 UvrB/uvrC motif 623 646 1.2E-6 T 14-10-2018 IPR001943 UVR domain GO:0005515 Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 SMART SM00487 9 424 5.9E-23 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 SUPERFAMILY SSF52540 36 588 1.28E-35 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 SMART SM00490 458 544 1.4E-19 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 Pfam PF04851 Type III restriction enzyme, res subunit 16 134 3.3E-10 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 Pfam PF00271 Helicase conserved C-terminal domain 441 543 8.8E-17 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 Pfam PF12344 Ultra-violet resistance protein B 550 591 2.3E-17 T 14-10-2018 IPR024759 UvrB, YAD/RRR-motif-containing domain Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 Gene3D G3DSA:3.40.50.300 263 412 1.1E-50 T 14-10-2018 Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 TIGRFAM TIGR00631 uvrb: excinuclease ABC subunit B 5 649 1.6E-296 T 14-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 Hamap MF_00204 UvrABC system protein B [uvrB]. 3 654 41.6 T 14-10-2018 IPR004807 UvrABC system, subunit B GO:0003677|GO:0005524|GO:0006289|GO:0009380|GO:0016887 Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 Gene3D G3DSA:3.30.2060.10 163 244 7.4E-18 T 14-10-2018 Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 SUPERFAMILY SSF46600 621 649 6.15E-6 T 14-10-2018 IPR036876 UVR domain superfamily Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 SUPERFAMILY SSF52540 9 413 1.64E-127 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 Gene3D G3DSA:3.40.50.300 413 594 1.9E-46 T 14-10-2018 Amico_0780 254158b2f50750a3e9d0f3f49182d202 682 Gene3D G3DSA:3.40.50.300 1 162 4.9E-74 T 14-10-2018 Amico_0408 d5fe9b409311d864b21147c5472ff7d4 211 Gene3D G3DSA:3.40.50.12740 3 204 1.8E-63 T 14-10-2018 Amico_0408 d5fe9b409311d864b21147c5472ff7d4 211 ProSitePatterns PS00622 LuxR-type HTH domain signature. 158 185 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_0408 d5fe9b409311d864b21147c5472ff7d4 211 SMART SM00421 141 198 1.3E-25 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_0408 d5fe9b409311d864b21147c5472ff7d4 211 SUPERFAMILY SSF52172 2 132 2.13E-33 T 14-10-2018 IPR011006 CheY-like superfamily Amico_0408 d5fe9b409311d864b21147c5472ff7d4 211 Pfam PF00072 Response regulator receiver domain 5 117 5.7E-26 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_0408 d5fe9b409311d864b21147c5472ff7d4 211 Pfam PF00196 Bacterial regulatory proteins, luxR family 143 198 5.1E-20 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_0408 d5fe9b409311d864b21147c5472ff7d4 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 158 174 3.9E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_0408 d5fe9b409311d864b21147c5472ff7d4 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 186 3.9E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_0408 d5fe9b409311d864b21147c5472ff7d4 211 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 144 158 3.9E-14 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_0408 d5fe9b409311d864b21147c5472ff7d4 211 SMART SM00448 3 116 8.7E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_0408 d5fe9b409311d864b21147c5472ff7d4 211 SUPERFAMILY SSF46894 139 204 2.45E-21 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Amico_0577 15c63467bc48821f128f5e1568525a70 158 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 7 140 5.6E-29 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Amico_0577 15c63467bc48821f128f5e1568525a70 158 PRINTS PR00446 Hydrogen uptake protein signature 16 27 5.1E-8 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Amico_0577 15c63467bc48821f128f5e1568525a70 158 PRINTS PR00446 Hydrogen uptake protein signature 4 16 5.1E-8 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Amico_0577 15c63467bc48821f128f5e1568525a70 158 PRINTS PR00446 Hydrogen uptake protein signature 58 68 5.1E-8 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Amico_0577 15c63467bc48821f128f5e1568525a70 158 PRINTS PR00446 Hydrogen uptake protein signature 69 85 5.1E-8 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Amico_0577 15c63467bc48821f128f5e1568525a70 158 Pfam PF01750 Hydrogenase maturation protease 23 140 2.0E-15 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Amico_0577 15c63467bc48821f128f5e1568525a70 158 SUPERFAMILY SSF53163 4 141 1.44E-29 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily Amico_0577 15c63467bc48821f128f5e1568525a70 158 Gene3D G3DSA:3.40.50.1450 3 150 7.8E-41 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily Amico_0668 2351fc1fc07e9fbdf8b036c286856e73 212 Gene3D G3DSA:3.40.50.2020 75 208 4.7E-11 T 14-10-2018 Amico_0668 2351fc1fc07e9fbdf8b036c286856e73 212 SUPERFAMILY SSF53271 65 204 1.18E-14 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 SUPERFAMILY SSF50494 14 271 1.31E-66 T 14-10-2018 IPR009003 Peptidase S1, PA clan Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 Pfam PF13180 PDZ domain 261 352 1.0E-18 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 Gene3D G3DSA:2.30.42.10 375 463 3.2E-20 T 14-10-2018 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 Gene3D G3DSA:2.30.42.10 256 361 1.3E-29 T 14-10-2018 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 Pfam PF13365 Trypsin-like peptidase domain 90 225 8.2E-36 T 14-10-2018 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 393 443 2.6E-9 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 SUPERFAMILY SSF50156 377 462 2.5E-17 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 SUPERFAMILY SSF50156 242 352 2.1E-26 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 SMART SM00228 261 343 3.0E-16 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 SMART SM00228 390 455 6.8E-12 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 Gene3D G3DSA:2.40.10.120 35 255 8.0E-81 T 14-10-2018 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 PRINTS PR00834 HtrA/DegQ protease family signature 196 213 7.2E-51 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 PRINTS PR00834 HtrA/DegQ protease family signature 218 235 7.2E-51 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 PRINTS PR00834 HtrA/DegQ protease family signature 301 313 7.2E-51 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 PRINTS PR00834 HtrA/DegQ protease family signature 99 111 7.2E-51 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 PRINTS PR00834 HtrA/DegQ protease family signature 120 140 7.2E-51 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 PRINTS PR00834 HtrA/DegQ protease family signature 160 184 7.2E-51 T 14-10-2018 IPR001940 Peptidase S1C GO:0004252|GO:0006508 Amico_0697 1eb19caaa9c262dd32a2f9380f20d5a5 464 TIGRFAM TIGR02037 degP_htrA_DO: peptidase Do 36 461 6.4E-146 T 14-10-2018 IPR011782 Peptidase S1C, Do GO:0004252|GO:0006508 Amico_1773 87398fe5b41116cb8c6b9f0f1a2e775e 267 Pfam PF13847 Methyltransferase domain 85 229 1.3E-36 T 14-10-2018 IPR025714 Methyltransferase domain Amico_1773 87398fe5b41116cb8c6b9f0f1a2e775e 267 SUPERFAMILY SSF53335 73 239 4.91E-39 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_1773 87398fe5b41116cb8c6b9f0f1a2e775e 267 Gene3D G3DSA:3.40.50.150 61 249 2.2E-51 T 14-10-2018 Amico_0465 6e85584432ceef06258a0b6f67363784 273 SMART SM00382 30 240 4.4E-11 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0465 6e85584432ceef06258a0b6f67363784 273 SUPERFAMILY SSF52540 4 247 1.15E-42 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0465 6e85584432ceef06258a0b6f67363784 273 Gene3D G3DSA:3.40.50.300 2 269 3.2E-55 T 14-10-2018 Amico_0465 6e85584432ceef06258a0b6f67363784 273 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0465 6e85584432ceef06258a0b6f67363784 273 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 227 254 3.8E-6 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Amico_0465 6e85584432ceef06258a0b6f67363784 273 ProSitePatterns PS00675 Sigma-54 interaction domain ATP-binding region A signature. 34 47 - T 14-10-2018 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 Amico_0465 6e85584432ceef06258a0b6f67363784 273 Pfam PF00005 ABC transporter 22 176 1.3E-18 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0987 588f7a8a21d251a15ea2ddde591e31ab 88 SUPERFAMILY SSF159468 10 84 2.09E-10 T 14-10-2018 IPR036906 ATPase, V1 complex, subunit F superfamily GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0987 588f7a8a21d251a15ea2ddde591e31ab 88 Pfam PF01990 ATP synthase (F/14-kDa) subunit 21 84 5.6E-6 T 14-10-2018 IPR008218 ATPase, V1 complex, subunit F GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0987 588f7a8a21d251a15ea2ddde591e31ab 88 Gene3D G3DSA:3.40.50.10580 2 88 5.5E-7 T 14-10-2018 IPR036906 ATPase, V1 complex, subunit F superfamily GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_1574 52e354a08f99b730fb5b0e89208ced40 329 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 243 327 6.5E-23 T 14-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 Amico_1574 52e354a08f99b730fb5b0e89208ced40 329 Pfam PF03099 Biotin/lipoate A/B protein ligase family 48 153 1.1E-9 T 14-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Amico_1574 52e354a08f99b730fb5b0e89208ced40 329 SUPERFAMILY SSF55681 1 241 2.27E-74 T 14-10-2018 Amico_1574 52e354a08f99b730fb5b0e89208ced40 329 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 5 321 2.1E-94 T 14-10-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 Amico_1574 52e354a08f99b730fb5b0e89208ced40 329 Gene3D G3DSA:3.30.930.10 2 241 2.2E-79 T 14-10-2018 Amico_1574 52e354a08f99b730fb5b0e89208ced40 329 SUPERFAMILY SSF82649 242 328 5.75E-22 T 14-10-2018 Amico_1574 52e354a08f99b730fb5b0e89208ced40 329 Gene3D G3DSA:3.30.390.50 242 329 7.4E-26 T 14-10-2018 Amico_1160 b49fc588fa7f48bf17b918c5d907cee6 370 Gene3D G3DSA:3.80.30.20 1 294 6.8E-83 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Amico_1160 b49fc588fa7f48bf17b918c5d907cee6 370 Pfam PF04055 Radical SAM superfamily 9 173 2.5E-18 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_1160 b49fc588fa7f48bf17b918c5d907cee6 370 SUPERFAMILY SSF102114 2 369 1.31E-88 T 14-10-2018 Amico_1160 b49fc588fa7f48bf17b918c5d907cee6 370 SMART SM00729 3 224 1.7E-39 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Amico_1160 b49fc588fa7f48bf17b918c5d907cee6 370 TIGRFAM TIGR00539 hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 5 339 2.1E-72 T 14-10-2018 IPR004559 Oxygen-independent coproporphyrinogen III oxidase-like GO:0004109|GO:0005737|GO:0006779|GO:0055114 Amico_1160 b49fc588fa7f48bf17b918c5d907cee6 370 Pfam PF06969 HemN C-terminal domain 296 359 7.4E-9 T 14-10-2018 IPR010723 HemN, C-terminal Amico_1446 f407537ca69b1e571333a5774880827a 163 TIGRFAM TIGR01498 folK: 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase 5 132 2.0E-41 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Amico_1446 f407537ca69b1e571333a5774880827a 163 Gene3D G3DSA:3.30.70.560 1 163 4.5E-59 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Amico_1446 f407537ca69b1e571333a5774880827a 163 SUPERFAMILY SSF55083 2 154 2.35E-50 T 14-10-2018 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Amico_1446 f407537ca69b1e571333a5774880827a 163 ProSitePatterns PS00794 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase signature. 86 97 - T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Amico_1446 f407537ca69b1e571333a5774880827a 163 Pfam PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) 5 132 2.7E-38 T 14-10-2018 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK GO:0003848|GO:0009396 KEGG: 00790+2.7.6.3|MetaCyc: PWY-6147|MetaCyc: PWY-6148|MetaCyc: PWY-6797|MetaCyc: PWY-7539|MetaCyc: PWY-7852|MetaCyc: PWY-7853 Amico_0985 473f1a087ba55c0e535d8e9d2cbe0b43 459 Pfam PF00006 ATP synthase alpha/beta family, nucleotide-binding domain 133 351 5.7E-63 T 14-10-2018 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0985 473f1a087ba55c0e535d8e9d2cbe0b43 459 SUPERFAMILY SSF52540 80 356 1.43E-77 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0985 473f1a087ba55c0e535d8e9d2cbe0b43 459 Hamap MF_00310 V-type ATP synthase beta chain [atpB]. 5 459 50.278 T 14-10-2018 IPR022879 V-type ATP synthase regulatory subunit B/beta Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0985 473f1a087ba55c0e535d8e9d2cbe0b43 459 Pfam PF02874 ATP synthase alpha/beta family, beta-barrel domain 13 69 2.7E-7 T 14-10-2018 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0985 473f1a087ba55c0e535d8e9d2cbe0b43 459 SUPERFAMILY SSF50615 8 73 1.29E-5 T 14-10-2018 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily GO:0046034|GO:1902600 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_0985 473f1a087ba55c0e535d8e9d2cbe0b43 459 Gene3D G3DSA:3.40.50.12240 2 458 3.1E-153 T 14-10-2018 Amico_0985 473f1a087ba55c0e535d8e9d2cbe0b43 459 ProSitePatterns PS00152 ATP synthase alpha and beta subunits signature. 342 351 - T 14-10-2018 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site GO:0005524 KEGG: 00190+3.6.3.14|KEGG: 00195+3.6.3.14|MetaCyc: PWY-7980 Amico_1659 e341afcad429bad6c3112131c43184c3 333 SMART SM00382 38 244 6.3E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1659 e341afcad429bad6c3112131c43184c3 333 SUPERFAMILY SSF52540 9 257 1.22E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1659 e341afcad429bad6c3112131c43184c3 333 Gene3D G3DSA:3.40.50.300 7 328 1.5E-97 T 14-10-2018 Amico_1659 e341afcad429bad6c3112131c43184c3 333 Pfam PF00005 ABC transporter 29 186 3.8E-28 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1659 e341afcad429bad6c3112131c43184c3 333 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 238 303 4.3E-18 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Amico_1659 e341afcad429bad6c3112131c43184c3 333 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 237 323 1.2E-25 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Amico_1659 e341afcad429bad6c3112131c43184c3 333 ProSitePatterns PS00211 ABC transporters family signature. 159 173 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0288 44b83776251c1e6b35fee29a54d2fcf0 172 TIGRFAM TIGR00040 yfcE: phosphodiesterase, MJ0936 family 4 156 1.8E-19 T 14-10-2018 IPR000979 Phosphodiesterase MJ0936/Vps29 Reactome: R-HSA-3238698 Amico_0288 44b83776251c1e6b35fee29a54d2fcf0 172 Pfam PF12850 Calcineurin-like phosphoesterase superfamily domain 4 153 4.6E-21 T 14-10-2018 IPR024654 Calcineurin-like phosphoesterase domain, lpxH type Reactome: R-HSA-3238698 Amico_0288 44b83776251c1e6b35fee29a54d2fcf0 172 Gene3D G3DSA:3.60.21.10 3 171 4.9E-40 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Amico_0288 44b83776251c1e6b35fee29a54d2fcf0 172 SUPERFAMILY SSF56300 4 167 6.78E-33 T 14-10-2018 Amico_1501 a23d4da77922f6eb4d7151769755fd01 172 TIGRFAM TIGR01670 KdsC-phosphatas: 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 9 160 1.8E-46 T 14-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Amico_1501 a23d4da77922f6eb4d7151769755fd01 172 PIRSF PIRSF006118 1 168 2.4E-58 T 14-10-2018 IPR010023 KdsC family GO:0016788 KEGG: 00540+3.1.3.45|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Amico_1501 a23d4da77922f6eb4d7151769755fd01 172 SUPERFAMILY SSF56784 7 162 3.75E-42 T 14-10-2018 IPR036412 HAD-like superfamily Amico_1501 a23d4da77922f6eb4d7151769755fd01 172 Pfam PF08282 haloacid dehalogenase-like hydrolase 84 143 7.1E-15 T 14-10-2018 Amico_1501 a23d4da77922f6eb4d7151769755fd01 172 Gene3D G3DSA:3.40.50.1000 4 167 2.1E-53 T 14-10-2018 IPR023214 HAD superfamily Amico_1833 d8d4bbc7c2c64b107ff9c258a4763d2b 224 Gene3D G3DSA:3.40.50.12500 1 223 6.4E-67 T 14-10-2018 Amico_1833 d8d4bbc7c2c64b107ff9c258a4763d2b 224 Pfam PF01177 Asp/Glu/Hydantoin racemase 4 196 1.8E-7 T 14-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Amico_1499 b72c070923363810a59c02b4fa591dd8 270 Pfam PF06230 Protein of unknown function (DUF1009) 62 262 2.8E-60 T 14-10-2018 IPR010415 Protein of unknown function DUF1009 KEGG: 00540+3.6.1.54 Amico_1499 b72c070923363810a59c02b4fa591dd8 270 Gene3D G3DSA:3.40.140.80 129 267 3.5E-42 T 14-10-2018 Amico_1499 b72c070923363810a59c02b4fa591dd8 270 Gene3D G3DSA:3.40.50.20 1 128 1.4E-12 T 14-10-2018 Amico_0554 a5a4cc35c695fbf53c988712d4401621 176 SUPERFAMILY SSF50447 6 94 4.59E-13 T 14-10-2018 IPR009000 Translation protein, beta-barrel domain superfamily Amico_0554 a5a4cc35c695fbf53c988712d4401621 176 SUPERFAMILY SSF50346 103 174 5.89E-15 T 14-10-2018 IPR011033 PRC-barrel-like superfamily Amico_0554 a5a4cc35c695fbf53c988712d4401621 176 TIGRFAM TIGR02273 16S_RimM: 16S rRNA processing protein RimM 7 173 8.2E-39 T 14-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Amico_0554 a5a4cc35c695fbf53c988712d4401621 176 Gene3D G3DSA:2.40.30.60 5 95 3.7E-15 T 14-10-2018 IPR036976 RimM, N-terminal domain superfamily GO:0006364 Amico_0554 a5a4cc35c695fbf53c988712d4401621 176 Gene3D G3DSA:2.30.30.240 98 176 1.1E-16 T 14-10-2018 Amico_0554 a5a4cc35c695fbf53c988712d4401621 176 Pfam PF01782 RimM N-terminal domain 9 93 8.1E-16 T 14-10-2018 IPR002676 RimM, N-terminal GO:0006364 Amico_0554 a5a4cc35c695fbf53c988712d4401621 176 Hamap MF_00014 Ribosome maturation factor RimM [rimM]. 6 174 21.22 T 14-10-2018 IPR011961 16S rRNA processing protein RimM GO:0005840|GO:0006364|GO:0043022 Amico_1291 93ce15c8748623d2ee4cdb532fa3cb54 432 SUPERFAMILY SSF56176 334 424 1.28E-15 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Amico_1291 93ce15c8748623d2ee4cdb532fa3cb54 432 Pfam PF03471 Transporter associated domain 337 415 7.4E-15 T 14-10-2018 IPR005170 Transporter-associated domain Amico_1291 93ce15c8748623d2ee4cdb532fa3cb54 432 SMART SM01091 336 416 5.4E-14 T 14-10-2018 IPR005170 Transporter-associated domain Amico_1291 93ce15c8748623d2ee4cdb532fa3cb54 432 SMART SM00116 211 260 1.9 T 14-10-2018 IPR000644 CBS domain Amico_1291 93ce15c8748623d2ee4cdb532fa3cb54 432 SMART SM00116 273 321 1.7 T 14-10-2018 IPR000644 CBS domain Amico_1291 93ce15c8748623d2ee4cdb532fa3cb54 432 Gene3D G3DSA:3.10.580.10 182 329 1.4E-47 T 14-10-2018 Amico_1291 93ce15c8748623d2ee4cdb532fa3cb54 432 Pfam PF01595 Domain of unknown function DUF21 12 186 1.5E-42 T 14-10-2018 IPR002550 CNNM, transmembrane domain Amico_1291 93ce15c8748623d2ee4cdb532fa3cb54 432 Pfam PF00571 CBS domain 211 257 7.4E-5 T 14-10-2018 IPR000644 CBS domain Amico_1291 93ce15c8748623d2ee4cdb532fa3cb54 432 Pfam PF00571 CBS domain 269 321 8.2E-7 T 14-10-2018 IPR000644 CBS domain Amico_1291 93ce15c8748623d2ee4cdb532fa3cb54 432 Gene3D G3DSA:3.30.465.10 330 414 3.2E-16 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Amico_1291 93ce15c8748623d2ee4cdb532fa3cb54 432 SUPERFAMILY SSF54631 197 340 1.34E-33 T 14-10-2018 Amico_0691 e7bceacd857b79221d35d2cf2c1dc469 655 SMART SM00491 494 624 4.7E-21 T 14-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Amico_0691 e7bceacd857b79221d35d2cf2c1dc469 655 Pfam PF13307 Helicase C-terminal domain 480 626 6.1E-26 T 14-10-2018 IPR006555 ATP-dependent helicase, C-terminal GO:0003676|GO:0005524|GO:0006139|GO:0008026|GO:0016818 Amico_0691 e7bceacd857b79221d35d2cf2c1dc469 655 SUPERFAMILY SSF52540 38 618 5.9E-27 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0691 e7bceacd857b79221d35d2cf2c1dc469 655 Gene3D G3DSA:3.40.50.300 460 647 3.0E-30 T 14-10-2018 Amico_0691 e7bceacd857b79221d35d2cf2c1dc469 655 Gene3D G3DSA:3.40.50.300 25 286 8.7E-39 T 14-10-2018 Amico_0691 e7bceacd857b79221d35d2cf2c1dc469 655 SMART SM00487 23 303 4.2E-5 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Amico_0691 e7bceacd857b79221d35d2cf2c1dc469 655 Pfam PF04851 Type III restriction enzyme, res subunit 25 254 1.3E-10 T 14-10-2018 IPR006935 Helicase/UvrB, N-terminal GO:0003677|GO:0005524|GO:0016787 Amico_0522 cd57c40884a54922d4ed8fedbfbcbb1d 304 SUPERFAMILY SSF103481 217 300 4.58E-15 T 14-10-2018 Amico_0522 cd57c40884a54922d4ed8fedbfbcbb1d 304 Pfam PF00892 EamA-like transporter family 17 153 4.2E-15 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_0522 cd57c40884a54922d4ed8fedbfbcbb1d 304 Pfam PF00892 EamA-like transporter family 163 296 3.3E-17 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_0522 cd57c40884a54922d4ed8fedbfbcbb1d 304 SUPERFAMILY SSF103481 52 156 4.71E-15 T 14-10-2018 Amico_0466 77e1da9c944bbc1b53c7e4c249069593 265 SUPERFAMILY SSF161098 59 247 9.94E-21 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0466 77e1da9c944bbc1b53c7e4c249069593 265 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 82 250 2.8E-14 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0466 77e1da9c944bbc1b53c7e4c249069593 265 Gene3D G3DSA:1.10.3720.10 55 256 4.8E-19 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0291 60baa1b56dc52f63b657fea8cfe9f144 452 Pfam PF01523 Putative modulator of DNA gyrase 28 319 5.8E-51 T 14-10-2018 IPR002510 Metalloprotease TldD/PmbA GO:0006508|GO:0008237 Amico_0291 60baa1b56dc52f63b657fea8cfe9f144 452 SUPERFAMILY SSF111283 9 451 2.49E-101 T 14-10-2018 IPR036059 Metalloprotease TldD/PmbA superfamily GO:0006508|GO:0008237 Amico_0291 60baa1b56dc52f63b657fea8cfe9f144 452 Gene3D G3DSA:3.30.2290.10 4 227 5.1E-47 T 14-10-2018 IPR035068 Metalloprotease TldD/PmbA, N-terminal Amico_0315 7640371455839b9d69d9a152a6f0c306 141 SUPERFAMILY SSF54747 1 84 1.44E-30 T 14-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily Amico_0315 7640371455839b9d69d9a152a6f0c306 141 Pfam PF00298 Ribosomal protein L11, RNA binding domain 71 139 1.5E-25 T 14-10-2018 IPR020783 Ribosomal protein L11, C-terminal GO:0003735|GO:0005840|GO:0006412 Amico_0315 7640371455839b9d69d9a152a6f0c306 141 Hamap MF_00736 50S ribosomal protein L11 [rplK]. 5 141 31.44 T 14-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Amico_0315 7640371455839b9d69d9a152a6f0c306 141 Gene3D G3DSA:3.30.1550.10 2 71 1.4E-34 T 14-10-2018 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily Amico_0315 7640371455839b9d69d9a152a6f0c306 141 Gene3D G3DSA:1.10.10.2720 72 141 1.5E-28 T 14-10-2018 Amico_0315 7640371455839b9d69d9a152a6f0c306 141 ProDom PD001367 RIBOSOMAL RIBONUCLEOPROTEIN L11 RRNA-BINDING RNA-BINDING METHYLATION 50S L11 BACTERIAL CHLOROPLAST 36 73 2.0E-12 T 14-10-2018 Amico_0315 7640371455839b9d69d9a152a6f0c306 141 ProSitePatterns PS00359 Ribosomal protein L11 signature. 126 141 - T 14-10-2018 IPR020785 Ribosomal protein L11, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0315 7640371455839b9d69d9a152a6f0c306 141 TIGRFAM TIGR01632 L11_bact: ribosomal protein uL11 3 141 7.8E-66 T 14-10-2018 IPR006519 Ribosomal protein L11, bacterial-type GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0315 7640371455839b9d69d9a152a6f0c306 141 Pfam PF03946 Ribosomal protein L11, N-terminal domain 9 66 4.5E-31 T 14-10-2018 IPR020784 Ribosomal protein L11, N-terminal Amico_0315 7640371455839b9d69d9a152a6f0c306 141 SUPERFAMILY SSF46906 67 139 9.94E-27 T 14-10-2018 IPR036769 Ribosomal protein L11, C-terminal domain superfamily Amico_0315 7640371455839b9d69d9a152a6f0c306 141 SMART SM00649 9 140 1.2E-86 T 14-10-2018 IPR000911 Ribosomal protein L11/L12 GO:0003735|GO:0005840|GO:0006412 Amico_1733 c5c6c72b4c5542ab839ba5b433a6b27d 358 Gene3D G3DSA:3.40.640.10 1 357 3.8E-94 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1733 c5c6c72b4c5542ab839ba5b433a6b27d 358 SUPERFAMILY SSF53383 4 355 2.52E-83 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1733 c5c6c72b4c5542ab839ba5b433a6b27d 358 PIRSF PIRSF000390 1 358 7.0E-95 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Amico_1733 c5c6c72b4c5542ab839ba5b433a6b27d 358 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 29 353 7.1E-80 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Amico_0206 3238770522855b2c4a864eefd336df72 520 Pfam PF13556 PucR C-terminal helix-turn-helix domain 457 515 2.8E-16 T 14-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain Amico_0206 3238770522855b2c4a864eefd336df72 520 Pfam PF07905 Purine catabolism regulatory protein-like family 4 119 1.6E-25 T 14-10-2018 IPR012914 Purine catabolism PurC-like domain Amico_0206 3238770522855b2c4a864eefd336df72 520 Gene3D G3DSA:1.10.10.2840 389 518 4.2E-16 T 14-10-2018 Amico_0830 dda3085b024ad3f3cb899aaf0803ff94 227 Gene3D G3DSA:3.40.980.10 56 227 1.2E-52 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Amico_0830 dda3085b024ad3f3cb899aaf0803ff94 227 SMART SM00852 70 214 4.5E-27 T 14-10-2018 IPR001453 MoaB/Mog domain Amico_0830 dda3085b024ad3f3cb899aaf0803ff94 227 SUPERFAMILY SSF53218 66 219 2.49E-42 T 14-10-2018 IPR036425 MoaB/Mog-like domain superfamily Amico_0830 dda3085b024ad3f3cb899aaf0803ff94 227 TIGRFAM TIGR00177 molyb_syn: molybdenum cofactor synthesis domain 67 208 6.1E-33 T 14-10-2018 IPR001453 MoaB/Mog domain Amico_0830 dda3085b024ad3f3cb899aaf0803ff94 227 Pfam PF00994 Probable molybdopterin binding domain 70 213 9.8E-32 T 14-10-2018 IPR001453 MoaB/Mog domain Amico_1873 725636d7f0684232b5333a16759951dd 600 Gene3D G3DSA:1.10.569.10 242 426 7.3E-144 T 14-10-2018 IPR013984 Aldehyde ferredoxin oxidoreductase, domain 2 Amico_1873 725636d7f0684232b5333a16759951dd 600 Gene3D G3DSA:1.10.599.10 240 599 7.3E-144 T 14-10-2018 IPR013985 Aldehyde ferredoxin oxidoreductase, domain 3 GO:0016625|GO:0051536|GO:0055114 KEGG: 00030+1.2.7.5 Amico_1873 725636d7f0684232b5333a16759951dd 600 SUPERFAMILY SSF56228 2 208 4.97E-75 T 14-10-2018 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily Amico_1873 725636d7f0684232b5333a16759951dd 600 Pfam PF01314 Aldehyde ferredoxin oxidoreductase, domains 2 & 3 221 599 2.4E-138 T 14-10-2018 IPR001203 Aldehyde ferredoxin oxidoreductase, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Amico_1873 725636d7f0684232b5333a16759951dd 600 Gene3D G3DSA:3.60.9.10 1 209 2.6E-86 T 14-10-2018 IPR036503 Aldehyde ferredoxin oxidoreductase, N-terminal domain superfamily Amico_1873 725636d7f0684232b5333a16759951dd 600 SUPERFAMILY SSF48310 211 599 1.26E-138 T 14-10-2018 IPR036021 Aldehyde ferredoxin oxidoreductase-like, C-terminal GO:0009055|GO:0016491|GO:0016625|GO:0051536|GO:0055114 Amico_1873 725636d7f0684232b5333a16759951dd 600 Pfam PF02730 Aldehyde ferredoxin oxidoreductase, N-terminal domain 7 206 4.8E-81 T 14-10-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Amico_1873 725636d7f0684232b5333a16759951dd 600 SMART SM00790 6 207 1.7E-117 T 14-10-2018 IPR013983 Aldehyde ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0016625|GO:0051536|GO:0055114 Amico_0229 1e11f93f910c3b4c551100b1ce9c2a14 552 Pfam PF03553 Na+/H+ antiporter family 193 522 1.0E-58 T 14-10-2018 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal GO:0016021 Amico_0029 d521dd623818bc3452d2ea78c2d94cd8 143 Gene3D G3DSA:3.10.129.10 1 135 6.7E-43 T 14-10-2018 Amico_0029 d521dd623818bc3452d2ea78c2d94cd8 143 SUPERFAMILY SSF54637 5 130 7.05E-30 T 14-10-2018 IPR029069 HotDog domain superfamily Amico_1008 ed1a4f03beb42ddc75a29000db6c8838 184 Gene3D G3DSA:2.20.28.10 147 184 5.0E-14 T 14-10-2018 Amico_1008 ed1a4f03beb42ddc75a29000db6c8838 184 Gene3D G3DSA:1.20.1260.10 2 145 9.7E-43 T 14-10-2018 IPR012347 Ferritin-like Amico_1008 ed1a4f03beb42ddc75a29000db6c8838 184 SUPERFAMILY SSF47240 4 142 2.12E-34 T 14-10-2018 IPR009078 Ferritin-like superfamily Amico_1008 ed1a4f03beb42ddc75a29000db6c8838 184 Pfam PF02915 Rubrerythrin 10 138 8.8E-25 T 14-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Amico_1008 ed1a4f03beb42ddc75a29000db6c8838 184 SUPERFAMILY SSF57802 152 183 6.52E-9 T 14-10-2018 Amico_0161 f1c2b33c72ce40ad19bb93f815221442 93 SUPERFAMILY SSF54285 1 93 7.03E-15 T 14-10-2018 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp Amico_0161 f1c2b33c72ce40ad19bb93f815221442 93 Gene3D G3DSA:3.10.20.30 1 93 7.8E-22 T 14-10-2018 IPR012675 Beta-grasp domain superfamily Amico_0161 f1c2b33c72ce40ad19bb93f815221442 93 TIGRFAM TIGR01687 moaD_arch: MoaD family protein 2 93 1.9E-16 T 14-10-2018 IPR010038 MoaD, archaeal-type Amico_0161 f1c2b33c72ce40ad19bb93f815221442 93 Pfam PF02597 ThiS family 7 93 3.7E-14 T 14-10-2018 IPR003749 Sulfur carrier ThiS/MoaD-like Reactome: R-HSA-947581 Amico_0351 6c355c0c0008f45ef6b834378094faec 357 Gene3D G3DSA:2.40.50.100 73 201 2.8E-48 T 14-10-2018 Amico_0351 6c355c0c0008f45ef6b834378094faec 357 Gene3D G3DSA:2.40.420.20 281 348 2.8E-48 T 14-10-2018 Amico_0351 6c355c0c0008f45ef6b834378094faec 357 Gene3D G3DSA:1.10.287.470 108 167 2.8E-48 T 14-10-2018 Amico_0351 6c355c0c0008f45ef6b834378094faec 357 Gene3D G3DSA:2.40.30.170 63 280 2.8E-48 T 14-10-2018 Amico_0351 6c355c0c0008f45ef6b834378094faec 357 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 74 249 6.6E-15 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Amico_0351 6c355c0c0008f45ef6b834378094faec 357 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 50 350 4.7E-44 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Amico_0351 6c355c0c0008f45ef6b834378094faec 357 SUPERFAMILY SSF111369 63 275 6.02E-19 T 14-10-2018 Amico_0941 edb6f5dab89a2bdc880ddf7320cc7384 528 SMART SM00155 441 468 1.2E-5 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Amico_0941 edb6f5dab89a2bdc880ddf7320cc7384 528 SMART SM00155 263 290 5.2E-6 T 14-10-2018 IPR001736 Phospholipase D/Transphosphatidylase GO:0003824 Reactome: R-HSA-1483148 Amico_0941 edb6f5dab89a2bdc880ddf7320cc7384 528 Hamap MF_01916 Cardiolipin synthase. 61 528 40.266 T 14-10-2018 IPR030874 Cardiolipin synthase, Firmicutes-type GO:0008808|GO:0032049 Amico_0941 edb6f5dab89a2bdc880ddf7320cc7384 528 Gene3D G3DSA:3.30.870.10 347 525 9.2E-29 T 14-10-2018 Amico_0941 edb6f5dab89a2bdc880ddf7320cc7384 528 Pfam PF13091 PLD-like domain 371 494 2.0E-26 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Amico_0941 edb6f5dab89a2bdc880ddf7320cc7384 528 Pfam PF13091 PLD-like domain 180 323 4.7E-13 T 14-10-2018 IPR025202 Phospholipase D-like domain Reactome: R-HSA-1483148|Reactome: R-HSA-1483166 Amico_0941 edb6f5dab89a2bdc880ddf7320cc7384 528 TIGRFAM TIGR04265 bac_cardiolipin: cardiolipin synthase 64 528 1.0E-143 T 14-10-2018 IPR022924 Cardiolipin synthase GO:0008808|GO:0016780|GO:0032049 Amico_0941 edb6f5dab89a2bdc880ddf7320cc7384 528 SUPERFAMILY SSF56024 316 512 3.59E-46 T 14-10-2018 Amico_0941 edb6f5dab89a2bdc880ddf7320cc7384 528 Pfam PF13396 Phospholipase_D-nuclease N-terminal 67 108 3.0E-11 T 14-10-2018 IPR027379 Cardiolipin synthase N-terminal Amico_0941 edb6f5dab89a2bdc880ddf7320cc7384 528 Gene3D G3DSA:3.30.870.10 159 346 4.4E-45 T 14-10-2018 Amico_0941 edb6f5dab89a2bdc880ddf7320cc7384 528 SUPERFAMILY SSF56024 155 358 4.71E-50 T 14-10-2018 Amico_0283 f118e54bbd6f958f1da62c98f1339e04 131 SUPERFAMILY SSF52821 13 109 1.57E-26 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Amico_0283 f118e54bbd6f958f1da62c98f1339e04 131 Pfam PF00581 Rhodanese-like domain 26 109 4.1E-13 T 14-10-2018 IPR001763 Rhodanese-like domain Amico_0283 f118e54bbd6f958f1da62c98f1339e04 131 SMART SM00450 23 117 6.8E-16 T 14-10-2018 IPR001763 Rhodanese-like domain Amico_0283 f118e54bbd6f958f1da62c98f1339e04 131 Gene3D G3DSA:3.40.250.10 21 110 3.1E-23 T 14-10-2018 IPR036873 Rhodanese-like domain superfamily Amico_0651 75115a1261f2d6cf79c1885efb0f4de1 73 Pfam PF01176 Translation initiation factor 1A / IF-1 8 71 1.6E-29 T 14-10-2018 IPR006196 RNA-binding domain, S1, IF1 type GO:0003723|GO:0003743|GO:0006413 Amico_0651 75115a1261f2d6cf79c1885efb0f4de1 73 Hamap MF_00075 Translation initiation factor IF-1 [infA]. 2 73 27.481 T 14-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Amico_0651 75115a1261f2d6cf79c1885efb0f4de1 73 SUPERFAMILY SSF50249 4 72 5.39E-29 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0651 75115a1261f2d6cf79c1885efb0f4de1 73 Gene3D G3DSA:2.40.50.140 1 73 6.2E-39 T 14-10-2018 Amico_0651 75115a1261f2d6cf79c1885efb0f4de1 73 TIGRFAM TIGR00008 infA: translation initiation factor IF-1 4 72 9.6E-39 T 14-10-2018 IPR004368 Translation initiation factor IF-1 GO:0003743|GO:0006413 Amico_0651 75115a1261f2d6cf79c1885efb0f4de1 73 SMART SM00316 3 73 4.6E-7 T 14-10-2018 IPR022967 RNA-binding domain, S1 Amico_0889 75639f130f02ac10d395c8fd473add7b 561 TIGRFAM TIGR00641 acid_CoA_mut_N: methylmalonyl-CoA mutase N-terminal domain 36 559 2.1E-246 T 14-10-2018 IPR006098 Methylmalonyl-CoA mutase, alpha chain, catalytic GO:0004494|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Amico_0889 75639f130f02ac10d395c8fd473add7b 561 Pfam PF01642 Methylmalonyl-CoA mutase 38 553 2.1E-226 T 14-10-2018 IPR006099 Methylmalonyl-CoA mutase, alpha/beta chain, catalytic GO:0016866|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Amico_0889 75639f130f02ac10d395c8fd473add7b 561 SUPERFAMILY SSF51703 16 555 1.73E-211 T 14-10-2018 IPR016176 Cobalamin (vitamin B12)-dependent enzyme, catalytic GO:0003824|GO:0031419 Reactome: R-HSA-196741|Reactome: R-HSA-3359475|Reactome: R-HSA-3359478|Reactome: R-HSA-71032 Amico_0889 75639f130f02ac10d395c8fd473add7b 561 Gene3D G3DSA:3.20.20.240 1 561 4.3E-250 T 14-10-2018 Amico_0718 772668e5bc74a8bc6c98e67b5d07ae37 456 Gene3D G3DSA:1.20.1730.10 4 453 8.1E-41 T 14-10-2018 IPR038377 Sodium/glucose symporter superfamily Amico_0718 772668e5bc74a8bc6c98e67b5d07ae37 456 Pfam PF00474 Sodium:solute symporter family 35 396 1.7E-17 T 14-10-2018 IPR001734 Sodium/solute symporter GO:0016020|GO:0022857|GO:0055085 Amico_0410 3885de94e717a363400c93ff2dcd4c45 536 Gene3D G3DSA:3.40.50.10890 220 403 3.8E-140 T 14-10-2018 Amico_0410 3885de94e717a363400c93ff2dcd4c45 536 Pfam PF00753 Metallo-beta-lactamase superfamily 10 198 4.1E-12 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0410 3885de94e717a363400c93ff2dcd4c45 536 SMART SM01027 252 377 1.5E-53 T 14-10-2018 IPR022712 Beta-Casp domain Amico_0410 3885de94e717a363400c93ff2dcd4c45 536 Gene3D G3DSA:3.60.15.10 6 437 3.8E-140 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_0410 3885de94e717a363400c93ff2dcd4c45 536 Pfam PF10996 Beta-Casp domain 252 376 8.7E-27 T 14-10-2018 IPR022712 Beta-Casp domain Amico_0410 3885de94e717a363400c93ff2dcd4c45 536 SUPERFAMILY SSF56281 1 463 4.85E-125 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_0410 3885de94e717a363400c93ff2dcd4c45 536 Pfam PF07521 Zn-dependent metallo-hydrolase RNA specificity domain 391 452 4.9E-13 T 14-10-2018 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain Amico_0410 3885de94e717a363400c93ff2dcd4c45 536 SMART SM00849 13 236 1.4E-17 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0093 ade839245773d69dbf71e5a370d499fd 460 Pfam PF01134 Glucose inhibited division protein A 394 456 6.3E-5 T 14-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Amico_0093 ade839245773d69dbf71e5a370d499fd 460 Gene3D G3DSA:3.50.50.60 1 113 5.3E-23 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_0093 ade839245773d69dbf71e5a370d499fd 460 Gene3D G3DSA:3.50.50.60 114 228 4.4E-11 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_0093 ade839245773d69dbf71e5a370d499fd 460 Pfam PF03486 HI0933-like protein 3 37 9.2E-7 T 14-10-2018 Amico_0093 ade839245773d69dbf71e5a370d499fd 460 PIRSF PIRSF038984 1 114 2.7E-15 T 14-10-2018 IPR028348 FAD dependent protein Amico_0093 ade839245773d69dbf71e5a370d499fd 460 PIRSF PIRSF038984 111 459 3.2E-31 T 14-10-2018 IPR028348 FAD dependent protein Amico_0093 ade839245773d69dbf71e5a370d499fd 460 SUPERFAMILY SSF51905 2 457 1.73E-30 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1673 fa7ca882e6140dfa8434751e53e31117 262 Pfam PF01614 Bacterial transcriptional regulator 126 246 2.6E-33 T 14-10-2018 IPR014757 Transcription regulator IclR, C-terminal Amico_1673 fa7ca882e6140dfa8434751e53e31117 262 SUPERFAMILY SSF46785 7 78 3.13E-15 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1673 fa7ca882e6140dfa8434751e53e31117 262 Gene3D G3DSA:1.10.10.10 5 80 6.2E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1673 fa7ca882e6140dfa8434751e53e31117 262 SMART SM00346 7 96 4.8E-16 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_1673 fa7ca882e6140dfa8434751e53e31117 262 SUPERFAMILY SSF55781 64 251 1.11E-44 T 14-10-2018 Amico_1673 fa7ca882e6140dfa8434751e53e31117 262 Pfam PF09339 IclR helix-turn-helix domain 10 56 7.3E-11 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_1673 fa7ca882e6140dfa8434751e53e31117 262 Gene3D G3DSA:3.30.450.40 81 256 3.4E-50 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_1488 7f803dcd52535d2763b4534da8439bd1 336 Pfam PF00534 Glycosyl transferases group 1 162 312 6.7E-28 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Amico_1488 7f803dcd52535d2763b4534da8439bd1 336 Gene3D G3DSA:3.40.50.2000 161 316 8.0E-35 T 14-10-2018 Amico_1488 7f803dcd52535d2763b4534da8439bd1 336 Gene3D G3DSA:3.40.50.2000 1 160 3.9E-27 T 14-10-2018 Amico_1488 7f803dcd52535d2763b4534da8439bd1 336 Pfam PF13439 Glycosyltransferase Family 4 13 153 4.1E-23 T 14-10-2018 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain Reactome: R-HSA-446193|Reactome: R-HSA-4549349 Amico_1488 7f803dcd52535d2763b4534da8439bd1 336 SUPERFAMILY SSF53756 6 334 9.87E-65 T 14-10-2018 Amico_1707 7492fcc7002c3ebbcea4576c131f6bda 108 Pfam PF14330 Domain of unknown function (DUF4387) 6 102 4.8E-35 T 14-10-2018 IPR025496 Protein of unknown function DUF4387 Amico_0881 c3dd08811eadb07b62c42d91e2b332d4 295 Pfam PF00953 Glycosyl transferase family 4 74 203 5.6E-20 T 14-10-2018 IPR000715 Glycosyl transferase, family 4 GO:0008963|GO:0016021 KEGG: 00550+2.7.8.13|MetaCyc: PWY-5265|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-4549356 Amico_0071 a7ae483deb45b8737bdc3d3e2c94e890 399 Gene3D G3DSA:3.40.50.1100 52 373 3.7E-106 T 14-10-2018 Amico_0071 a7ae483deb45b8737bdc3d3e2c94e890 399 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 67 368 2.2E-64 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Amico_0071 a7ae483deb45b8737bdc3d3e2c94e890 399 SUPERFAMILY SSF53686 5 380 5.63E-81 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Amico_0071 a7ae483deb45b8737bdc3d3e2c94e890 399 Gene3D G3DSA:3.40.50.1100 103 198 3.7E-106 T 14-10-2018 Amico_0071 a7ae483deb45b8737bdc3d3e2c94e890 399 TIGRFAM TIGR00260 thrC: threonine synthase 52 372 5.5E-57 T 14-10-2018 IPR004450 Threonine synthase-like Amico_1308 9468dcaf0ab738063c886425b7a26eda 416 Pfam PF00682 HMGL-like 37 296 2.4E-59 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Amico_1308 9468dcaf0ab738063c886425b7a26eda 416 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 226 239 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Amico_1308 9468dcaf0ab738063c886425b7a26eda 416 SUPERFAMILY SSF51569 33 315 2.01E-72 T 14-10-2018 Amico_1308 9468dcaf0ab738063c886425b7a26eda 416 Gene3D G3DSA:3.20.20.70 37 339 1.2E-79 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_1308 9468dcaf0ab738063c886425b7a26eda 416 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 45 61 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Amico_1395 44f49c85ea5340fed90e6761db11d927 109 Pfam PF04723 Glycine reductase complex selenoprotein A 1 101 1.1E-49 T 14-10-2018 IPR006812 Glycine reductase complex selenoprotein A GO:0030699|GO:0030700|GO:0050485|GO:0055114 Amico_1395 44f49c85ea5340fed90e6761db11d927 109 PIRSF PIRSF000181 1 108 1.1E-43 T 14-10-2018 IPR006812 Glycine reductase complex selenoprotein A GO:0030699|GO:0030700|GO:0050485|GO:0055114 Amico_1213 03924d2b6e182a749ce2037c3a51c031 648 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 126 563 1.3E-91 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1213 03924d2b6e182a749ce2037c3a51c031 648 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 30 635 1.4E-211 T 14-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ Amico_1901 960bd02448865e23e259afa14f45bf13 399 Pfam PF07687 Peptidase dimerisation domain 192 266 7.4E-9 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1901 960bd02448865e23e259afa14f45bf13 399 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 20 379 8.2E-117 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_1901 960bd02448865e23e259afa14f45bf13 399 SUPERFAMILY SSF55031 188 294 4.32E-34 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1901 960bd02448865e23e259afa14f45bf13 399 SUPERFAMILY SSF53187 6 390 1.54E-86 T 14-10-2018 Amico_1901 960bd02448865e23e259afa14f45bf13 399 PIRSF PIRSF005962 1 393 1.3E-133 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_1901 960bd02448865e23e259afa14f45bf13 399 Gene3D G3DSA:3.40.630.10 19 376 3.1E-145 T 14-10-2018 Amico_1901 960bd02448865e23e259afa14f45bf13 399 Pfam PF01546 Peptidase family M20/M25/M40 75 384 7.7E-34 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1901 960bd02448865e23e259afa14f45bf13 399 Gene3D G3DSA:3.30.70.360 185 299 3.1E-145 T 14-10-2018 Amico_1293 7079e304eeefa559a8744d2bd411761e 473 Pfam PF01554 MatE 24 183 1.5E-22 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1293 7079e304eeefa559a8744d2bd411761e 473 Pfam PF01554 MatE 255 398 5.0E-14 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1293 7079e304eeefa559a8744d2bd411761e 473 PIRSF PIRSF006603 2 445 2.7E-54 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1755 ac05f74b2df9469843266852ec186c1b 382 PIRSF PIRSF016907 1 375 3.1E-125 T 14-10-2018 IPR011386 Putative ATP-NAD kinase Amico_1755 ac05f74b2df9469843266852ec186c1b 382 SUPERFAMILY SSF111331 2 142 6.54E-6 T 14-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Amico_1755 ac05f74b2df9469843266852ec186c1b 382 Pfam PF01513 ATP-NAD kinase 3 372 1.1E-44 T 14-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Amico_1813 3f19050689d602d19810d6b0abe7ba7d 171 Gene3D G3DSA:3.30.1340.20 67 171 2.8E-35 T 14-10-2018 IPR035922 3H domain superfamily Amico_1813 3f19050689d602d19810d6b0abe7ba7d 171 ProDom PD469575 TRANSCRIPTION DNA-BINDING REGULATION TRANSCRIPTIONAL REGULATOR REPRESSOR FAMILY BIOTIN REGULATOR 3H 86 170 4.0E-19 T 14-10-2018 IPR004173 3H domain GO:0036094 Amico_1813 3f19050689d602d19810d6b0abe7ba7d 171 PIRSF PIRSF037847 1 171 1.2E-66 T 14-10-2018 IPR026043 Transcription repressor NadR Amico_1813 3f19050689d602d19810d6b0abe7ba7d 171 SUPERFAMILY SSF75500 69 170 1.57E-30 T 14-10-2018 IPR035922 3H domain superfamily Amico_1813 3f19050689d602d19810d6b0abe7ba7d 171 Pfam PF02829 3H domain 72 169 5.2E-33 T 14-10-2018 IPR004173 3H domain GO:0036094 Amico_1813 3f19050689d602d19810d6b0abe7ba7d 171 SUPERFAMILY SSF46785 5 61 2.22E-10 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1813 3f19050689d602d19810d6b0abe7ba7d 171 Pfam PF08279 HTH domain 6 58 3.0E-14 T 14-10-2018 IPR013196 Helix-turn-helix, type 11 Amico_1813 3f19050689d602d19810d6b0abe7ba7d 171 Gene3D G3DSA:1.10.10.10 1 61 3.4E-18 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1847 35715dd591ad0ec99931daa2f93bd896 199 Gene3D G3DSA:1.10.1760.20 1 177 8.2E-47 T 14-10-2018 Amico_1847 35715dd591ad0ec99931daa2f93bd896 199 PIRSF PIRSF016661 1 182 5.1E-35 T 14-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 Amico_1847 35715dd591ad0ec99931daa2f93bd896 199 Pfam PF02632 BioY family 29 173 2.1E-36 T 14-10-2018 IPR003784 BioY protein GO:0005886|GO:0015225|GO:0015878 Amico_1164 0333a67f8a996ec4b306708f601d4f2f 235 Hamap MF_00421 Phosphoribosylformylglycinamidine synthase subunit PurQ [purQ]. 1 227 43.229 T 14-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 Amico_1164 0333a67f8a996ec4b306708f601d4f2f 235 Pfam PF13507 CobB/CobQ-like glutamine amidotransferase domain 2 211 2.7E-43 T 14-10-2018 Amico_1164 0333a67f8a996ec4b306708f601d4f2f 235 SUPERFAMILY SSF52317 2 229 3.06E-71 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Amico_1164 0333a67f8a996ec4b306708f601d4f2f 235 SMART SM01211 1 229 2.2E-117 T 14-10-2018 Amico_1164 0333a67f8a996ec4b306708f601d4f2f 235 PIRSF PIRSF001586 1 232 1.1E-84 T 14-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 Amico_1164 0333a67f8a996ec4b306708f601d4f2f 235 TIGRFAM TIGR01737 FGAM_synth_I: phosphoribosylformylglycinamidine synthase I 1 228 4.0E-93 T 14-10-2018 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ GO:0004642|GO:0005737|GO:0006189 KEGG: 00220+3.5.1.2|KEGG: 00230+6.3.5.3|KEGG: 00250+3.5.1.2|KEGG: 00471+3.5.1.2|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 Amico_1164 0333a67f8a996ec4b306708f601d4f2f 235 Gene3D G3DSA:3.40.50.880 1 231 9.4E-64 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Amico_1329 dd9bbe8b85278cb8859211c66a9a06ba 232 SMART SM00382 32 220 8.3E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1329 dd9bbe8b85278cb8859211c66a9a06ba 232 Gene3D G3DSA:3.40.50.300 2 232 7.2E-64 T 14-10-2018 Amico_1329 dd9bbe8b85278cb8859211c66a9a06ba 232 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1329 dd9bbe8b85278cb8859211c66a9a06ba 232 Pfam PF00005 ABC transporter 23 172 7.9E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1329 dd9bbe8b85278cb8859211c66a9a06ba 232 SUPERFAMILY SSF52540 3 225 3.51E-70 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1599 7d2866ae9f0b89db7e4bae48d472d099 257 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 217 252 1.0E-12 T 14-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Amico_1599 7d2866ae9f0b89db7e4bae48d472d099 257 Pfam PF00970 Oxidoreductase FAD-binding domain 10 97 5.7E-6 T 14-10-2018 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain Reactome: R-HSA-1237044 Amico_1599 7d2866ae9f0b89db7e4bae48d472d099 257 SUPERFAMILY SSF52343 94 251 8.92E-21 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Amico_1599 7d2866ae9f0b89db7e4bae48d472d099 257 Gene3D G3DSA:3.40.50.80 100 213 4.5E-12 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Amico_1599 7d2866ae9f0b89db7e4bae48d472d099 257 SUPERFAMILY SSF63380 6 99 8.42E-20 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Amico_1599 7d2866ae9f0b89db7e4bae48d472d099 257 Gene3D G3DSA:2.40.30.10 1 97 3.5E-23 T 14-10-2018 Amico_1599 7d2866ae9f0b89db7e4bae48d472d099 257 PIRSF PIRSF006816 2 257 5.9E-54 T 14-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 Amico_1599 7d2866ae9f0b89db7e4bae48d472d099 257 Gene3D G3DSA:2.10.240.10 215 253 4.8E-12 T 14-10-2018 IPR037117 Dihydroorotate dehydrogenase, electron transfer subunit, Fe-S binding domain superfamily Amico_1905 39f35932c4adb15d42260dd507a8ac9f 511 TIGRFAM TIGR01225 hutH: histidine ammonia-lyase 7 506 4.1E-201 T 14-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1905 39f35932c4adb15d42260dd507a8ac9f 511 ProSitePatterns PS00488 Phenylalanine and histidine ammonia-lyases signature. 142 157 - T 14-10-2018 IPR022313 Phenylalanine/histidine ammonia-lyases, active site GO:0016841 Reactome: R-HSA-70921 Amico_1905 39f35932c4adb15d42260dd507a8ac9f 511 Hamap MF_00229 Histidine ammonia-lyase [hutH]. 6 505 45.072 T 14-10-2018 IPR005921 Histidine ammonia-lyase GO:0004397|GO:0005737|GO:0006548 KEGG: 00340+4.3.1.3|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1905 39f35932c4adb15d42260dd507a8ac9f 511 Pfam PF00221 Aromatic amino acid lyase 14 472 1.2E-197 T 14-10-2018 IPR001106 Aromatic amino acid lyase Reactome: R-HSA-70921 Amico_1905 39f35932c4adb15d42260dd507a8ac9f 511 Gene3D G3DSA:1.20.200.10 201 510 1.1E-122 T 14-10-2018 Amico_1905 39f35932c4adb15d42260dd507a8ac9f 511 SUPERFAMILY SSF48557 4 504 5.02E-197 T 14-10-2018 IPR008948 L-Aspartase-like GO:0003824 Amico_1905 39f35932c4adb15d42260dd507a8ac9f 511 Gene3D G3DSA:1.10.275.10 6 200 9.1E-71 T 14-10-2018 IPR024083 Fumarase/histidase, N-terminal Amico_1363 ee210727b8937b4dd3b5d668d5cd4d35 259 Pfam PF01171 PP-loop family 37 217 2.2E-19 T 14-10-2018 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal Reactome: R-HSA-6782315 Amico_1363 ee210727b8937b4dd3b5d668d5cd4d35 259 PIRSF PIRSF004976 3 258 3.5E-65 T 14-10-2018 IPR035107 tRNA thiolation protein, TtcA/Ctu1 type GO:0008033 Reactome: R-HSA-6782315 Amico_1363 ee210727b8937b4dd3b5d668d5cd4d35 259 Gene3D G3DSA:3.40.50.620 9 257 6.6E-54 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_1363 ee210727b8937b4dd3b5d668d5cd4d35 259 SUPERFAMILY SSF52402 15 227 6.17E-50 T 14-10-2018 Amico_0443 ac15e612b91d0b0dfabfbb6e704b743e 316 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 6 313 2.1E-75 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_0443 ac15e612b91d0b0dfabfbb6e704b743e 316 Gene3D G3DSA:3.40.190.10 31 313 7.0E-82 T 14-10-2018 Amico_0443 ac15e612b91d0b0dfabfbb6e704b743e 316 Pfam PF16868 NMT1-like family 31 313 1.9E-73 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_0443 ac15e612b91d0b0dfabfbb6e704b743e 316 Gene3D G3DSA:3.40.190.10 114 249 7.0E-82 T 14-10-2018 Amico_0443 ac15e612b91d0b0dfabfbb6e704b743e 316 SUPERFAMILY SSF53850 28 315 9.87E-64 T 14-10-2018 Amico_1368 8621aaa53aaab79595e6769b77b7d9d3 278 Pfam PF00175 Oxidoreductase NAD-binding domain 103 196 1.2E-6 T 14-10-2018 IPR001433 Oxidoreductase FAD/NAD(P)-binding GO:0016491|GO:0055114 Amico_1368 8621aaa53aaab79595e6769b77b7d9d3 278 SUPERFAMILY SSF52343 88 248 2.62E-30 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Amico_1368 8621aaa53aaab79595e6769b77b7d9d3 278 Gene3D G3DSA:3.40.50.80 99 203 1.1E-34 T 14-10-2018 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain Amico_1368 8621aaa53aaab79595e6769b77b7d9d3 278 PIRSF PIRSF006816 1 254 7.6E-68 T 14-10-2018 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit GO:0006221|GO:0050660|GO:0051537 Amico_1368 8621aaa53aaab79595e6769b77b7d9d3 278 Gene3D G3DSA:2.40.30.10 1 91 4.6E-20 T 14-10-2018 Amico_1368 8621aaa53aaab79595e6769b77b7d9d3 278 Pfam PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B 213 248 7.1E-12 T 14-10-2018 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain Amico_1368 8621aaa53aaab79595e6769b77b7d9d3 278 SUPERFAMILY SSF63380 2 91 3.93E-18 T 14-10-2018 IPR017938 Riboflavin synthase-like beta-barrel Amico_1263 5f356d23b2cc653272f2841a27667c45 331 Pfam PF00146 NADH dehydrogenase 14 324 1.2E-59 T 14-10-2018 IPR001694 NADH:ubiquinone oxidoreductase, subunit 1/F420H2 oxidoreductase subunit H GO:0016020|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_0258 cea558deb6e8eaaefaf09ceae4555367 176 Pfam PF09512 Thiamine-precursor transporter protein (ThiW) 22 167 2.3E-43 T 14-10-2018 IPR012652 Energy coupling factor transporter S component ThiW Amico_0258 cea558deb6e8eaaefaf09ceae4555367 176 TIGRFAM TIGR02359 thiW: energy coupling factor transporter S component ThiW 19 172 4.0E-43 T 14-10-2018 IPR012652 Energy coupling factor transporter S component ThiW Amico_0258 cea558deb6e8eaaefaf09ceae4555367 176 Gene3D G3DSA:1.10.1760.20 10 172 4.4E-14 T 14-10-2018 Amico_0258 cea558deb6e8eaaefaf09ceae4555367 176 PIRSF PIRSF024534 15 176 8.1E-50 T 14-10-2018 IPR012652 Energy coupling factor transporter S component ThiW Amico_1202 f854541c6e1b098812aa13cda91fedea 288 Pfam PF16976 Flp pilus assembly protein RcpC/CpaB 111 219 1.2E-25 T 14-10-2018 IPR031571 Flp pilus assembly protein RcpC/CpaB domain Amico_1202 f854541c6e1b098812aa13cda91fedea 288 Pfam PF08666 SAF domain 42 101 3.4E-6 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Amico_1202 f854541c6e1b098812aa13cda91fedea 288 SMART SM00858 41 103 2.4E-7 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Amico_1202 f854541c6e1b098812aa13cda91fedea 288 TIGRFAM TIGR03177 pilus_cpaB: Flp pilus assembly protein CpaB 6 275 8.2E-54 T 14-10-2018 IPR017592 Pilus assembly, Flp-type CpaB Amico_0751 d30014df97fff4a799deda77f207f17a 465 SUPERFAMILY SSF51569 4 301 1.08E-86 T 14-10-2018 Amico_0751 d30014df97fff4a799deda77f207f17a 465 SUPERFAMILY SSF89000 298 442 3.73E-50 T 14-10-2018 Amico_0751 d30014df97fff4a799deda77f207f17a 465 Gene3D G3DSA:3.20.20.70 1 457 5.1E-168 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0751 d30014df97fff4a799deda77f207f17a 465 Pfam PF02436 Conserved carboxylase domain 293 447 4.8E-56 T 14-10-2018 IPR003379 Carboxylase, conserved domain Reactome: R-HSA-196780|Reactome: R-HSA-3371599|Reactome: R-HSA-70263 Amico_0751 d30014df97fff4a799deda77f207f17a 465 Pfam PF00682 HMGL-like 5 270 1.0E-48 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Amico_1373 0d4585581cdc2d7fb8cc77cebbac146e 489 Pfam PF01425 Amidase 25 468 9.5E-156 T 14-10-2018 IPR023631 Amidase signature domain KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Amico_1373 0d4585581cdc2d7fb8cc77cebbac146e 489 PIRSF PIRSF001221 443 479 2.1 T 14-10-2018 Amico_1373 0d4585581cdc2d7fb8cc77cebbac146e 489 PIRSF PIRSF001221 1 446 9.5E-49 T 14-10-2018 Amico_1373 0d4585581cdc2d7fb8cc77cebbac146e 489 Gene3D G3DSA:3.90.1300.10 2 482 2.7E-186 T 14-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Amico_1373 0d4585581cdc2d7fb8cc77cebbac146e 489 ProSitePatterns PS00571 Amidases signature. 152 183 - T 14-10-2018 IPR020556 Amidase, conserved site KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921|Reactome: R-HSA-2142753 Amico_1373 0d4585581cdc2d7fb8cc77cebbac146e 489 Hamap MF_00120 Glutamyl-tRNA(Gln) amidotransferase subunit A [gatA]. 11 479 87.458 T 14-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Amico_1373 0d4585581cdc2d7fb8cc77cebbac146e 489 TIGRFAM TIGR00132 gatA: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit 15 478 1.4E-176 T 14-10-2018 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit GO:0006412|GO:0030956|GO:0050567 KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Amico_1373 0d4585581cdc2d7fb8cc77cebbac146e 489 SUPERFAMILY SSF75304 1 480 7.72E-161 T 14-10-2018 IPR036928 Amidase signature (AS) superfamily KEGG: 00970+6.3.5.7|MetaCyc: PWY-5921 Amico_1821 236c3f832f5fc71c346433ede0c2f63a 265 SUPERFAMILY SSF55811 85 244 1.49E-42 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Amico_1821 236c3f832f5fc71c346433ede0c2f63a 265 Pfam PF00293 NUDIX domain 137 240 3.0E-18 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Amico_1821 236c3f832f5fc71c346433ede0c2f63a 265 ProSitePatterns PS00893 Nudix box signature. 166 187 - T 14-10-2018 IPR020084 NUDIX hydrolase, conserved site GO:0016787 Amico_1821 236c3f832f5fc71c346433ede0c2f63a 265 Pfam PF09297 NADH pyrophosphatase zinc ribbon domain 100 127 5.3E-7 T 14-10-2018 IPR015376 Zinc ribbon, NADH pyrophosphatase GO:0016787|GO:0046872 KEGG: 00760+3.6.1.22|MetaCyc: PWY-5381|MetaCyc: PWY-7761 Amico_1821 236c3f832f5fc71c346433ede0c2f63a 265 Gene3D G3DSA:3.90.79.20 1 132 6.8E-21 T 14-10-2018 Amico_1821 236c3f832f5fc71c346433ede0c2f63a 265 PRINTS PR00502 NUDIX hydrolase family signature 175 190 2.1E-5 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Amico_1821 236c3f832f5fc71c346433ede0c2f63a 265 PRINTS PR00502 NUDIX hydrolase family signature 161 175 2.1E-5 T 14-10-2018 IPR020476 NUDIX hydrolase Reactome: R-HSA-2393930 Amico_1821 236c3f832f5fc71c346433ede0c2f63a 265 Gene3D G3DSA:3.90.79.10 133 262 5.8E-38 T 14-10-2018 Amico_1821 236c3f832f5fc71c346433ede0c2f63a 265 SUPERFAMILY SSF55811 2 103 1.58E-8 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Amico_1852 d714b1ac0c3f7e6312bf052aeb7ea390 258 SUPERFAMILY SSF52540 4 252 2.91E-61 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1852 d714b1ac0c3f7e6312bf052aeb7ea390 258 Pfam PF13614 AAA domain 4 175 9.8E-57 T 14-10-2018 IPR025669 AAA domain Amico_1852 d714b1ac0c3f7e6312bf052aeb7ea390 258 Gene3D G3DSA:3.40.50.300 3 258 1.7E-74 T 14-10-2018 Amico_1852 d714b1ac0c3f7e6312bf052aeb7ea390 258 PIRSF PIRSF009320 52 257 3.3E-6 T 14-10-2018 Amico_1852 d714b1ac0c3f7e6312bf052aeb7ea390 258 PIRSF PIRSF009320 1 101 1.8E-14 T 14-10-2018 Amico_0045 f78a38c0a83c67aaffe206da452d4ff4 305 SUPERFAMILY SSF51735 1 125 1.97E-7 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0045 f78a38c0a83c67aaffe206da452d4ff4 305 Pfam PF08546 Ketopantoate reductase PanE/ApbA C terminal 183 302 6.7E-26 T 14-10-2018 IPR013752 Ketopantoate reductase, C-terminal domain Amico_0045 f78a38c0a83c67aaffe206da452d4ff4 305 Pfam PF02558 Ketopantoate reductase PanE/ApbA 3 156 4.4E-26 T 14-10-2018 IPR013332 Ketopantoate reductase, N-terminal domain Amico_0045 f78a38c0a83c67aaffe206da452d4ff4 305 Gene3D G3DSA:3.40.50.720 1 178 1.8E-50 T 14-10-2018 Amico_0045 f78a38c0a83c67aaffe206da452d4ff4 305 SUPERFAMILY SSF48179 183 302 6.12E-24 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Amico_0045 f78a38c0a83c67aaffe206da452d4ff4 305 Gene3D G3DSA:1.10.1040.10 182 305 1.0E-39 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Amico_0045 f78a38c0a83c67aaffe206da452d4ff4 305 TIGRFAM TIGR00745 apbA_panE: 2-dehydropantoate 2-reductase 2 302 5.7E-62 T 14-10-2018 IPR003710 Ketopantoate reductase ApbA/PanE GO:0005737|GO:0008677|GO:0015940 KEGG: 00770+1.1.1.169|MetaCyc: PWY-6654 Amico_1837 069f2e7201c2a7a1c15edf7ddb9537b4 385 SUPERFAMILY SSF53383 7 363 2.99E-90 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1837 069f2e7201c2a7a1c15edf7ddb9537b4 385 Gene3D G3DSA:3.90.1150.10 12 374 2.2E-115 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1837 069f2e7201c2a7a1c15edf7ddb9537b4 385 Pfam PF00266 Aminotransferase class-V 40 323 2.3E-36 T 14-10-2018 IPR000192 Aminotransferase class V domain Amico_1837 069f2e7201c2a7a1c15edf7ddb9537b4 385 Gene3D G3DSA:3.40.640.10 17 260 2.2E-115 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1837 069f2e7201c2a7a1c15edf7ddb9537b4 385 PIRSF PIRSF000524 1 383 7.3E-105 T 14-10-2018 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase KEGG: 00440+2.6.1.37|MetaCyc: PWY-6832|Reactome: R-HSA-389661|Reactome: R-HSA-9033241 Amico_1805 bbd5960f01d319ac9e03608261aab8b2 181 Pfam PF08905 Domain of unknown function (DUF1850) 56 135 1.8E-15 T 14-10-2018 IPR015001 Protein of unknown function DUF1850 Amico_0609 439a892c4f2fd4b805ab7e2ad1820104 611 SUPERFAMILY SSF102114 231 597 1.7E-44 T 14-10-2018 Amico_0609 439a892c4f2fd4b805ab7e2ad1820104 611 SMART SM00729 256 476 6.9E-23 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Amico_0609 439a892c4f2fd4b805ab7e2ad1820104 611 TIGRFAM TIGR03960 rSAM_fuse_unch: radical SAM family uncharacterized protein 13 601 6.3E-224 T 14-10-2018 IPR023862 Conserved hypothetical protein CHP03960, radical SAM Amico_0609 439a892c4f2fd4b805ab7e2ad1820104 611 Pfam PF04055 Radical SAM superfamily 260 423 1.3E-14 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_0609 439a892c4f2fd4b805ab7e2ad1820104 611 Gene3D G3DSA:3.80.30.20 255 451 3.2E-16 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Amico_1435 f7a50bc64ef9f85260a500c79ace2776 154 Pfam PF09424 Yqey-like protein 6 149 1.6E-41 T 14-10-2018 IPR019004 Uncharacterised protein YqeY/AIM41 Amico_1435 f7a50bc64ef9f85260a500c79ace2776 154 Gene3D G3DSA:1.10.10.410 94 150 4.4E-19 T 14-10-2018 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, C-terminal Amico_1435 f7a50bc64ef9f85260a500c79ace2776 154 Gene3D G3DSA:1.10.1510.10 2 93 1.9E-23 T 14-10-2018 Amico_1435 f7a50bc64ef9f85260a500c79ace2776 154 SUPERFAMILY SSF89095 4 149 3.5E-35 T 14-10-2018 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like GO:0016884 Amico_1854 7c2cff4ed23dbd8f6139e6c736cd06a9 264 Pfam PF00565 Staphylococcal nuclease homologue 57 166 1.0E-18 T 14-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 Amico_1854 7c2cff4ed23dbd8f6139e6c736cd06a9 264 Gene3D G3DSA:2.40.50.90 27 171 4.0E-37 T 14-10-2018 IPR035437 SNase-like, OB-fold superfamily Amico_1854 7c2cff4ed23dbd8f6139e6c736cd06a9 264 SUPERFAMILY SSF50199 30 167 3.14E-27 T 14-10-2018 Amico_1854 7c2cff4ed23dbd8f6139e6c736cd06a9 264 ProSitePatterns PS01284 Thermonuclease family signature 2. 105 115 - T 14-10-2018 IPR002071 Thermonuclease active site GO:0003676|GO:0004518 Reactome: R-HSA-6802952 Amico_1854 7c2cff4ed23dbd8f6139e6c736cd06a9 264 SMART SM00318 31 167 1.8E-22 T 14-10-2018 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold Reactome: R-HSA-6802952 Amico_1578 f94f5d4724ad43fdc6ab3202e8d5e219 335 SUPERFAMILY SSF82649 245 327 6.8E-15 T 14-10-2018 Amico_1578 f94f5d4724ad43fdc6ab3202e8d5e219 335 TIGRFAM TIGR00545 lipoyltrans: lipoyltransferase and lipoate-protein ligase 5 309 9.3E-86 T 14-10-2018 IPR004562 Lipoyltransferase/lipoate-protein ligase GO:0009249 KEGG: 00785+6.3.1.20|Reactome: R-HSA-389661 Amico_1578 f94f5d4724ad43fdc6ab3202e8d5e219 335 Pfam PF03099 Biotin/lipoate A/B protein ligase family 51 156 5.2E-7 T 14-10-2018 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain GO:0006464 KEGG: 00785+2.3.1.181|MetaCyc: PWY-6987|MetaCyc: PWY-7382 Amico_1578 f94f5d4724ad43fdc6ab3202e8d5e219 335 Gene3D G3DSA:3.30.930.10 8 244 1.5E-75 T 14-10-2018 Amico_1578 f94f5d4724ad43fdc6ab3202e8d5e219 335 Pfam PF10437 Bacterial lipoate protein ligase C-terminus 245 311 3.1E-13 T 14-10-2018 IPR019491 Lipoate protein ligase, C-terminal KEGG: 00785+6.3.1.20 Amico_1578 f94f5d4724ad43fdc6ab3202e8d5e219 335 Gene3D G3DSA:3.30.390.50 246 331 1.8E-23 T 14-10-2018 Amico_1578 f94f5d4724ad43fdc6ab3202e8d5e219 335 SUPERFAMILY SSF55681 7 243 9.94E-71 T 14-10-2018 Amico_0868 85ea705213a807245e8420fbb6528e4e 248 Gene3D G3DSA:3.40.50.620 2 244 2.0E-83 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0868 85ea705213a807245e8420fbb6528e4e 248 TIGRFAM TIGR00552 nadE: NAD+ synthetase 10 241 1.6E-75 T 14-10-2018 IPR003694 NAD(+) synthetase GO:0003952|GO:0005524|GO:0009435 KEGG: 00760+6.3.1.5|Reactome: R-HSA-196807 Amico_0868 85ea705213a807245e8420fbb6528e4e 248 Hamap MF_00193 NH(3)-dependent NAD(+) synthetase [nadE]. 7 243 46.323 T 14-10-2018 IPR022926 NH(3)-dependent NAD(+) synthetase GO:0008795|GO:0009435 KEGG: 00760+6.3.1.5 Amico_0868 85ea705213a807245e8420fbb6528e4e 248 SUPERFAMILY SSF52402 5 244 2.79E-75 T 14-10-2018 Amico_0868 85ea705213a807245e8420fbb6528e4e 248 Pfam PF02540 NAD synthase 12 240 3.8E-71 T 14-10-2018 IPR022310 NAD/GMP synthase Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 Gene3D G3DSA:3.30.420.110 125 256 8.4E-17 T 14-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 Pfam PF05192 MutS domain III 268 550 1.3E-37 T 14-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 PIRSF PIRSF037677 230 833 3.5E-132 T 14-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 PIRSF PIRSF037677 3 134 2.2E-22 T 14-10-2018 IPR017261 DNA mismatch repair protein MutS/MSH GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 Hamap MF_00096 DNA mismatch repair protein MutS [mutS]. 9 840 22.972 T 14-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 Pfam PF00488 MutS domain V 604 791 1.9E-77 T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 TIGRFAM TIGR01070 mutS1: DNA mismatch repair protein MutS 10 844 7.9E-264 T 14-10-2018 IPR005748 DNA mismatch repair protein MutS GO:0005524|GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 SMART SM00534 600 789 6.4E-106 T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 Gene3D G3DSA:3.40.50.300 559 856 8.8E-98 T 14-10-2018 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 Gene3D G3DSA:1.10.1420.10 271 553 8.5E-89 T 14-10-2018 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 SMART SM00533 277 582 8.8E-99 T 14-10-2018 IPR007696 DNA mismatch repair protein MutS, core GO:0005524|GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 SUPERFAMILY SSF53150 120 276 9.68E-22 T 14-10-2018 IPR036678 MutS, connector domain superfamily GO:0005524|GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 Gene3D G3DSA:3.40.1170.10 4 120 1.1E-45 T 14-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 Pfam PF05188 MutS domain II 133 249 8.7E-7 T 14-10-2018 IPR007860 DNA mismatch repair protein MutS, connector domain GO:0005524|GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 SUPERFAMILY SSF52540 558 792 1.52E-58 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 Gene3D G3DSA:1.10.1420.10 391 526 8.5E-89 T 14-10-2018 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 ProSitePatterns PS00486 DNA mismatch repair proteins mutS family signature. 681 697 - T 14-10-2018 IPR000432 DNA mismatch repair protein MutS, C-terminal GO:0005524|GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 Pfam PF05190 MutS family domain IV 419 509 4.0E-29 T 14-10-2018 IPR007861 DNA mismatch repair protein MutS, clamp GO:0005524|GO:0006298|GO:0030983 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 Pfam PF01624 MutS domain I 10 118 4.5E-39 T 14-10-2018 IPR007695 DNA mismatch repair protein MutS-like, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 SUPERFAMILY SSF55271 6 114 1.1E-39 T 14-10-2018 IPR016151 DNA mismatch repair protein MutS, N-terminal GO:0005524|GO:0006298|GO:0030983 Reactome: R-HSA-5632928 Amico_1027 53ded84d45e5405a0ccb3a2d81c4c03c 858 SUPERFAMILY SSF48334 265 557 1.06E-79 T 14-10-2018 IPR036187 DNA mismatch repair protein MutS, core domain superfamily Amico_0009 5627e17a418e0225dbe0e6c095440256 283 TIGRFAM TIGR00125 cyt_tran_rel: cytidyltransferase-like domain 27 82 1.6E-9 T 14-10-2018 IPR004821 Cytidyltransferase-like domain GO:0003824|GO:0009058 Amico_0009 5627e17a418e0225dbe0e6c095440256 283 Gene3D G3DSA:3.40.50.620 1 177 1.5E-80 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0009 5627e17a418e0225dbe0e6c095440256 283 Pfam PF02569 Pantoate-beta-alanine ligase 3 277 4.9E-109 T 14-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Amico_0009 5627e17a418e0225dbe0e6c095440256 283 SUPERFAMILY SSF52374 1 281 1.45E-110 T 14-10-2018 Amico_0009 5627e17a418e0225dbe0e6c095440256 283 Hamap MF_00158 Pantothenate synthetase [panC]. 2 279 40.496 T 14-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Amico_0009 5627e17a418e0225dbe0e6c095440256 283 TIGRFAM TIGR00018 panC: pantoate--beta-alanine ligase 1 279 1.4E-112 T 14-10-2018 IPR003721 Pantoate-beta-alanine ligase GO:0004592|GO:0015940 KEGG: 00410+6.3.2.1|KEGG: 00770+6.3.2.1 Amico_0009 5627e17a418e0225dbe0e6c095440256 283 Gene3D G3DSA:3.30.1300.10 178 277 4.3E-35 T 14-10-2018 Amico_1455 eefa64ff37ca09613f86ff922761c2e3 343 Pfam PF04748 Divergent polysaccharide deacetylase 123 332 7.0E-64 T 14-10-2018 IPR006837 Divergent polysaccharide deacetylase Amico_1455 eefa64ff37ca09613f86ff922761c2e3 343 SUPERFAMILY SSF88713 119 333 6.23E-53 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Amico_1455 eefa64ff37ca09613f86ff922761c2e3 343 Gene3D G3DSA:3.20.20.370 117 334 2.0E-63 T 14-10-2018 Amico_0089 514ee67716870acd4de241bc218f127e 159 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 151 1.4E-33 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1013 5509c987c520fc050cba54e170de7975 277 SUPERFAMILY SSF53167 3 275 1.53E-82 T 14-10-2018 IPR035994 Nucleoside phosphorylase superfamily GO:0003824|GO:0009116 Amico_1013 5509c987c520fc050cba54e170de7975 277 Gene3D G3DSA:3.40.50.1580 1 272 4.7E-99 T 14-10-2018 Amico_1013 5509c987c520fc050cba54e170de7975 277 PIRSF PIRSF000477 1 272 1.0E-95 T 14-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 Amico_1013 5509c987c520fc050cba54e170de7975 277 Pfam PF01048 Phosphorylase superfamily 24 269 6.7E-45 T 14-10-2018 IPR000845 Nucleoside phosphorylase domain GO:0003824|GO:0009116 Amico_1013 5509c987c520fc050cba54e170de7975 277 TIGRFAM TIGR01700 PNPH: purine nucleoside phosphorylase I, inosine and guanosine-specific 25 267 3.0E-91 T 14-10-2018 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 Amico_1013 5509c987c520fc050cba54e170de7975 277 TIGRFAM TIGR01697 PNPH-PUNA-XAPA: inosine/guanosine/xanthosine phosphorylase family 25 268 1.7E-91 T 14-10-2018 IPR011268 Purine nucleoside phosphorylase GO:0004731|GO:0006139 KEGG: 00230+2.4.2.1|KEGG: 00240+2.4.2.1|KEGG: 00760+2.4.2.1|MetaCyc: PWY-4202|MetaCyc: PWY-5532|MetaCyc: PWY-5695|MetaCyc: PWY-6608|MetaCyc: PWY-6609|MetaCyc: PWY-6611|MetaCyc: PWY-6620|MetaCyc: PWY-6627|MetaCyc: PWY-6644|MetaCyc: PWY-7179|MetaCyc: PWY-7179-1|Reactome: R-HSA-6798695|Reactome: R-HSA-74217|Reactome: R-HSA-74259 Amico_1665 b72747ee83671de2c5b31fd8c53a3690 318 SUPERFAMILY SSF51569 3 204 2.56E-66 T 14-10-2018 Amico_1665 b72747ee83671de2c5b31fd8c53a3690 318 ProSitePatterns PS00159 KDPG and KHG aldolases active site. 36 45 - T 14-10-2018 IPR031337 KDPG/KHG aldolase, active site 1 KEGG: 00030+4.1.2.14|KEGG: 00330+4.1.3.16|KEGG: 00630+4.1.3.16|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Amico_1665 b72747ee83671de2c5b31fd8c53a3690 318 Pfam PF01081 KDPG and KHG aldolase 10 198 1.4E-69 T 14-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Amico_1665 b72747ee83671de2c5b31fd8c53a3690 318 ProSitePatterns PS00160 KDPG and KHG aldolases Schiff-base forming residue. 124 137 - T 14-10-2018 IPR031338 KDPG/KHG aldolase, active site 2 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Amico_1665 b72747ee83671de2c5b31fd8c53a3690 318 Gene3D G3DSA:3.20.20.70 1 208 1.4E-74 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_1665 b72747ee83671de2c5b31fd8c53a3690 318 TIGRFAM TIGR01182 eda: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase 10 204 2.2E-77 T 14-10-2018 IPR000887 KDPG/KHG aldolase GO:0016829 KEGG: 00030+4.1.2.14|MetaCyc: PWY-2221|MetaCyc: PWY-6507|MetaCyc: PWY-7242|MetaCyc: PWY-7310|MetaCyc: PWY-7562 Amico_1774 b5bb86e53200e1049e00d2b6b4f93e50 66 Gene3D G3DSA:2.40.50.140 1 65 9.2E-30 T 14-10-2018 Amico_1774 b5bb86e53200e1049e00d2b6b4f93e50 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 14-10-2018 IPR019844 Cold-shock conserved site Amico_1774 b5bb86e53200e1049e00d2b6b4f93e50 66 SMART SM00357 3 66 8.7E-32 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 Amico_1774 b5bb86e53200e1049e00d2b6b4f93e50 66 PIRSF PIRSF002599 1 66 9.8E-25 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 Amico_1774 b5bb86e53200e1049e00d2b6b4f93e50 66 PRINTS PR00050 Cold shock protein signature 39 57 4.1E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_1774 b5bb86e53200e1049e00d2b6b4f93e50 66 PRINTS PR00050 Cold shock protein signature 24 33 4.1E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_1774 b5bb86e53200e1049e00d2b6b4f93e50 66 PRINTS PR00050 Cold shock protein signature 4 19 4.1E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_1774 b5bb86e53200e1049e00d2b6b4f93e50 66 SUPERFAMILY SSF50249 3 65 2.48E-24 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1774 b5bb86e53200e1049e00d2b6b4f93e50 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 2.8E-30 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_1690 ffc00d7515f1f8fbad834a5eb5a73dd9 433 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 8 420 3.5E-87 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1690 ffc00d7515f1f8fbad834a5eb5a73dd9 433 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 426 3.6E-100 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1690 ffc00d7515f1f8fbad834a5eb5a73dd9 433 PIRSF PIRSF006066 1 432 2.8E-114 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0301 22d1ca88e6a8c50cbaa64a9addcb4f64 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 12 25 2.7E-9 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Amico_0301 22d1ca88e6a8c50cbaa64a9addcb4f64 202 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 33 56 2.7E-9 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Amico_0301 22d1ca88e6a8c50cbaa64a9addcb4f64 202 ProSitePatterns PS01081 TetR-type HTH domain signature. 24 54 - T 14-10-2018 IPR023772 DNA-binding HTH domain, TetR-type, conserved site Amico_0301 22d1ca88e6a8c50cbaa64a9addcb4f64 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 12 58 1.2E-16 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Amico_0301 22d1ca88e6a8c50cbaa64a9addcb4f64 202 Gene3D G3DSA:1.10.357.10 1 195 2.4E-26 T 14-10-2018 Amico_0301 22d1ca88e6a8c50cbaa64a9addcb4f64 202 SUPERFAMILY SSF46689 4 75 1.54E-18 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Amico_0680 f3a76d09419565c13b5370391e4c5e44 204 PIRSF PIRSF000495 1 202 9.2E-57 T 14-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Amico_0680 f3a76d09419565c13b5370391e4c5e44 204 Pfam PF00117 Glutamine amidotransferase class-I 4 188 1.1E-13 T 14-10-2018 IPR017926 Glutamine amidotransferase Amico_0680 f3a76d09419565c13b5370391e4c5e44 204 SUPERFAMILY SSF52317 2 196 1.58E-41 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Amico_0680 f3a76d09419565c13b5370391e4c5e44 204 Gene3D G3DSA:3.40.50.880 1 201 7.4E-56 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Amico_0680 f3a76d09419565c13b5370391e4c5e44 204 Hamap MF_00278 Imidazole glycerol phosphate synthase subunit HisH [hisH]. 1 199 29.996 T 14-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Amico_0680 f3a76d09419565c13b5370391e4c5e44 204 TIGRFAM TIGR01855 IMP_synth_hisH: imidazole glycerol phosphate synthase, glutamine amidotransferase subunit 2 197 6.4E-53 T 14-10-2018 IPR010139 Imidazole glycerol phosphate synthase, subunit H GO:0000105|GO:0005737|GO:0016763 Amico_0448 80b38fccb6189aec120b9eb75c4feff6 505 Gene3D G3DSA:3.90.220.20 316 505 5.7E-28 T 14-10-2018 Amico_0448 80b38fccb6189aec120b9eb75c4feff6 505 Pfam PF01420 Type I restriction modification DNA specificity domain 321 473 9.7E-10 T 14-10-2018 IPR000055 Restriction endonuclease, type I, HsdS GO:0003677|GO:0006304 Amico_0448 80b38fccb6189aec120b9eb75c4feff6 505 SUPERFAMILY SSF53335 10 291 6.06E-13 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0448 80b38fccb6189aec120b9eb75c4feff6 505 SUPERFAMILY SSF116734 321 476 4.32E-28 T 14-10-2018 Amico_0448 80b38fccb6189aec120b9eb75c4feff6 505 Gene3D G3DSA:3.40.50.150 53 293 2.9E-12 T 14-10-2018 Amico_1415 6ef4298c657589a2a97e99720991f39d 703 ProSitePatterns PS00181 Glutamine synthetase putative ATP-binding region signature. 315 330 - T 14-10-2018 IPR027303 Glutamine synthetase, glycine-rich site KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964|Reactome: R-HSA-210455|Reactome: R-HSA-70614 Amico_1415 6ef4298c657589a2a97e99720991f39d 703 Pfam PF12437 Glutamine synthetase type III N terminal 8 169 1.0E-71 T 14-10-2018 IPR022147 Glutamine synthetase type III N-terminal GO:0004356 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Amico_1415 6ef4298c657589a2a97e99720991f39d 703 Pfam PF00120 Glutamine synthetase, catalytic domain 179 376 3.2E-22 T 14-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Amico_1415 6ef4298c657589a2a97e99720991f39d 703 Gene3D G3DSA:3.30.590.10 179 415 5.3E-31 T 14-10-2018 Amico_1415 6ef4298c657589a2a97e99720991f39d 703 SMART SM01230 170 455 6.5E-40 T 14-10-2018 IPR008146 Glutamine synthetase, catalytic domain GO:0004356|GO:0006807 KEGG: 00220+6.3.1.2|KEGG: 00250+6.3.1.2|KEGG: 00630+6.3.1.2|KEGG: 00910+6.3.1.2|MetaCyc: PWY-381|MetaCyc: PWY-5675|MetaCyc: PWY-6549|MetaCyc: PWY-6963|MetaCyc: PWY-6964 Amico_1415 6ef4298c657589a2a97e99720991f39d 703 SUPERFAMILY SSF55931 191 580 5.69E-68 T 14-10-2018 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain GO:0003824 Amico_1415 6ef4298c657589a2a97e99720991f39d 703 Gene3D G3DSA:1.20.120.1560 561 703 1.0E-19 T 14-10-2018 Amico_1324 c768c179eadaeeb4ebdb4fdcb40c31d0 309 Gene3D G3DSA:3.20.20.70 6 295 1.4E-105 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_1324 c768c179eadaeeb4ebdb4fdcb40c31d0 309 SUPERFAMILY SSF51569 2 284 2.38E-61 T 14-10-2018 Amico_1324 c768c179eadaeeb4ebdb4fdcb40c31d0 309 Pfam PF00682 HMGL-like 12 281 7.8E-39 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Amico_1066 b3a73bc7373f78cbed84609e3ea54b74 332 TIGRFAM TIGR00747 fabH: 3-oxoacyl-[acyl-carrier-protein] synthase III 9 330 1.8E-110 T 14-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Amico_1066 b3a73bc7373f78cbed84609e3ea54b74 332 Gene3D G3DSA:3.40.47.10 7 332 9.1E-122 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_1066 b3a73bc7373f78cbed84609e3ea54b74 332 Pfam PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 245 331 5.6E-31 T 14-10-2018 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Amico_1066 b3a73bc7373f78cbed84609e3ea54b74 332 Hamap MF_01815 3-oxoacyl-[acyl-carrier-protein] synthase 3 [fabH]. 7 332 59.834 T 14-10-2018 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Amico_1066 b3a73bc7373f78cbed84609e3ea54b74 332 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 112 191 3.5E-28 T 14-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Amico_1066 b3a73bc7373f78cbed84609e3ea54b74 332 SUPERFAMILY SSF53901 8 331 3.04E-65 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_0236 c555d1812489aaf0cbff34da29b625e6 797 Gene3D G3DSA:3.20.110.20 3 329 3.9E-31 T 14-10-2018 Amico_0236 c555d1812489aaf0cbff34da29b625e6 797 SUPERFAMILY SSF88713 1 325 4.64E-70 T 14-10-2018 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel GO:0003824|GO:0005975 Amico_0236 c555d1812489aaf0cbff34da29b625e6 797 Pfam PF12055 Domain of unknown function (DUF3536) 339 621 1.7E-93 T 14-10-2018 IPR021923 Protein of unknown function DUF3536 Amico_0236 c555d1812489aaf0cbff34da29b625e6 797 Pfam PF03065 Glycosyl hydrolase family 57 111 327 5.6E-20 T 14-10-2018 IPR004300 Glycoside hydrolase family 57, N-terminal domain GO:0003824|GO:0005975 Amico_0151 86eba914b9333eef9fc0bbb15e732019 363 SUPERFAMILY SSF51412 12 353 3.97E-43 T 14-10-2018 Amico_0151 86eba914b9333eef9fc0bbb15e732019 363 Gene3D G3DSA:3.20.20.70 11 361 6.2E-65 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0151 86eba914b9333eef9fc0bbb15e732019 363 Pfam PF03060 Nitronate monooxygenase 11 356 8.2E-52 T 14-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Amico_0111 2bfb5152f92386e8facfb40b9955a56e 169 Gene3D G3DSA:1.10.1760.20 2 166 2.8E-16 T 14-10-2018 Amico_0111 2bfb5152f92386e8facfb40b9955a56e 169 PIRSF PIRSF027391 1 168 8.2E-49 T 14-10-2018 IPR014535 Predicted heptaprenyl diphosphate synthase, component I Amico_0111 2bfb5152f92386e8facfb40b9955a56e 169 Pfam PF07456 Heptaprenyl diphosphate synthase component I 15 157 5.5E-45 T 14-10-2018 IPR010898 Heptaprenyl diphosphate synthase component I Amico_0635 ff6835298eca4b1bef1784509e57806c 70 Pfam PF00831 Ribosomal L29 protein 5 60 7.1E-23 T 14-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0635 ff6835298eca4b1bef1784509e57806c 70 Hamap MF_00374 50S ribosomal protein L29 [rpmC]. 1 60 16.847 T 14-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0635 ff6835298eca4b1bef1784509e57806c 70 SUPERFAMILY SSF46561 1 63 9.94E-21 T 14-10-2018 IPR036049 Ribosomal protein L29/L35 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0635 ff6835298eca4b1bef1784509e57806c 70 Gene3D G3DSA:1.10.287.310 1 68 1.6E-25 T 14-10-2018 Amico_0635 ff6835298eca4b1bef1784509e57806c 70 TIGRFAM TIGR00012 L29: ribosomal protein uL29 6 60 1.6E-20 T 14-10-2018 IPR001854 Ribosomal protein L29/L35 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0254 511d1500b33150ca90d2f86977d5057b 244 Pfam PF01066 CDP-alcohol phosphatidyltransferase 15 79 1.2E-13 T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Amico_0254 511d1500b33150ca90d2f86977d5057b 244 Gene3D G3DSA:1.20.120.1760 3 128 7.5E-14 T 14-10-2018 Amico_0254 511d1500b33150ca90d2f86977d5057b 244 TIGRFAM TIGR00473 pssA: CDP-diacylglycerol-serine O-phosphatidyltransferase 22 176 1.4E-39 T 14-10-2018 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase KEGG: 00260+2.7.8.8|KEGG: 00564+2.7.8.8|MetaCyc: PWY-5669 Amico_0254 511d1500b33150ca90d2f86977d5057b 244 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 57 79 - T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Amico_1908 466531e6f331a577b6d32cf1e1f10982 141 TIGRFAM TIGR00738 rrf2_super: Rrf2 family protein 8 132 4.5E-28 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type Amico_1908 466531e6f331a577b6d32cf1e1f10982 141 Gene3D G3DSA:1.10.10.10 5 140 9.7E-29 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1908 466531e6f331a577b6d32cf1e1f10982 141 Pfam PF02082 Transcriptional regulator 7 85 1.4E-20 T 14-10-2018 IPR000944 Transcription regulator Rrf2-type Amico_1908 466531e6f331a577b6d32cf1e1f10982 141 SUPERFAMILY SSF46785 8 134 6.83E-26 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0981 3b7fbfe499f495efdcd7ef34d56c2b9a 204 Gene3D G3DSA:1.10.8.420 1 52 7.4E-15 T 14-10-2018 Amico_0981 3b7fbfe499f495efdcd7ef34d56c2b9a 204 Pfam PF13662 Toprim domain 81 171 2.7E-15 T 14-10-2018 IPR006171 TOPRIM domain Amico_0981 3b7fbfe499f495efdcd7ef34d56c2b9a 204 SUPERFAMILY SSF111304 3 198 3.14E-63 T 14-10-2018 IPR023627 Recombination protein RecR Amico_0981 3b7fbfe499f495efdcd7ef34d56c2b9a 204 SMART SM00493 80 165 2.2E-6 T 14-10-2018 IPR006171 TOPRIM domain Amico_0981 3b7fbfe499f495efdcd7ef34d56c2b9a 204 Pfam PF02132 RecR protein 41 77 1.1E-12 T 14-10-2018 IPR023628 Recombination protein RecR, C4-type zinc finger Amico_0981 3b7fbfe499f495efdcd7ef34d56c2b9a 204 TIGRFAM TIGR00615 recR: recombination protein RecR 3 195 3.7E-63 T 14-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Amico_0981 3b7fbfe499f495efdcd7ef34d56c2b9a 204 Gene3D G3DSA:3.40.1360.10 77 198 1.4E-38 T 14-10-2018 Amico_0981 3b7fbfe499f495efdcd7ef34d56c2b9a 204 Hamap MF_00017 Recombination protein RecR [recR]. 1 198 78.165 T 14-10-2018 IPR000093 DNA recombination protein RecR GO:0003677|GO:0006281|GO:0006310 Amico_0566 9bc54b02894f7f51342076401e26a8e0 287 Gene3D G3DSA:3.30.70.100 180 267 2.9E-25 T 14-10-2018 Amico_0566 9bc54b02894f7f51342076401e26a8e0 287 SUPERFAMILY SSF82689 178 279 8.89E-19 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Amico_0566 9bc54b02894f7f51342076401e26a8e0 287 SUPERFAMILY SSF50182 113 177 6.54E-13 T 14-10-2018 IPR010920 LSM domain superfamily Amico_0566 9bc54b02894f7f51342076401e26a8e0 287 SUPERFAMILY SSF82861 40 112 2.09E-8 T 14-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Amico_0566 9bc54b02894f7f51342076401e26a8e0 287 Gene3D G3DSA:2.30.30.60 129 178 3.8E-18 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Amico_0566 9bc54b02894f7f51342076401e26a8e0 287 Pfam PF00924 Mechanosensitive ion channel 71 268 5.2E-44 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 Gene3D G3DSA:3.50.30.10 485 596 3.3E-36 T 14-10-2018 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 Gene3D G3DSA:3.40.1380.20 347 479 3.1E-187 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 SUPERFAMILY SSF50800 84 179 1.92E-26 T 14-10-2018 IPR011037 Pyruvate kinase-like, insert domain superfamily Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 SUPERFAMILY SSF52009 475 592 1.31E-32 T 14-10-2018 IPR036637 Phosphohistidine domain superfamily GO:0016310|GO:0016772 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 PRINTS PR01050 Pyruvate kinase family signature 280 304 5.2E-71 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 PRINTS PR01050 Pyruvate kinase family signature 305 323 5.2E-71 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 PRINTS PR01050 Pyruvate kinase family signature 324 340 5.2E-71 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 PRINTS PR01050 Pyruvate kinase family signature 198 212 5.2E-71 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 PRINTS PR01050 Pyruvate kinase family signature 73 89 5.2E-71 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 PRINTS PR01050 Pyruvate kinase family signature 255 279 5.2E-71 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 PRINTS PR01050 Pyruvate kinase family signature 228 254 5.2E-71 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 Pfam PF02887 Pyruvate kinase, alpha/beta domain 368 481 4.5E-33 T 14-10-2018 IPR015795 Pyruvate kinase, C-terminal KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 Pfam PF00391 PEP-utilising enzyme, mobile domain 514 586 1.6E-25 T 14-10-2018 IPR008279 PEP-utilising enzyme, mobile domain GO:0016310|GO:0016772 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 SUPERFAMILY SSF51621 8 354 1.28E-101 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 Pfam PF00224 Pyruvate kinase, barrel domain 15 351 9.1E-138 T 14-10-2018 IPR015793 Pyruvate kinase, barrel GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 Gene3D G3DSA:3.20.20.60 16 346 3.1E-187 T 14-10-2018 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 SUPERFAMILY SSF52935 335 484 9.29E-41 T 14-10-2018 IPR036918 Pyruvate kinase, C-terminal domain superfamily KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 Gene3D G3DSA:2.40.33.10 84 180 3.1E-187 T 14-10-2018 IPR015806 Pyruvate kinase, insert domain superfamily GO:0004743|GO:0006096 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0733 32dc568a1a16676aa6b58c477eff02bc 597 TIGRFAM TIGR01064 pyruv_kin: pyruvate kinase 16 483 6.4E-177 T 14-10-2018 IPR001697 Pyruvate kinase GO:0000287|GO:0004743|GO:0006096|GO:0030955 KEGG: 00010+2.7.1.40|KEGG: 00230+2.7.1.40|KEGG: 00620+2.7.1.40|MetaCyc: PWY-1042|MetaCyc: PWY-2221|MetaCyc: PWY-5484|MetaCyc: PWY-5723|MetaCyc: PWY-6142|MetaCyc: PWY-6886|MetaCyc: PWY-6901|MetaCyc: PWY-7003|MetaCyc: PWY-7218|MetaCyc: PWY-7383|Reactome: R-HSA-70171 Amico_0538 a49fef46f09988e5e8411ef8eb00425c 420 Hamap MF_00127 Histidine--tRNA ligase [hisS]. 2 418 32.568 T 14-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Amico_0538 a49fef46f09988e5e8411ef8eb00425c 420 Gene3D G3DSA:3.30.930.10 1 322 9.8E-117 T 14-10-2018 Amico_0538 a49fef46f09988e5e8411ef8eb00425c 420 Pfam PF13393 Histidyl-tRNA synthetase 9 311 3.8E-43 T 14-10-2018 Amico_0538 a49fef46f09988e5e8411ef8eb00425c 420 Pfam PF03129 Anticodon binding domain 333 418 9.6E-14 T 14-10-2018 IPR004154 Anticodon-binding Amico_0538 a49fef46f09988e5e8411ef8eb00425c 420 Gene3D G3DSA:3.40.50.800 327 419 3.6E-25 T 14-10-2018 IPR036621 Anticodon-binding domain superfamily Amico_0538 a49fef46f09988e5e8411ef8eb00425c 420 SUPERFAMILY SSF55681 5 319 1.91E-96 T 14-10-2018 Amico_0538 a49fef46f09988e5e8411ef8eb00425c 420 PIRSF PIRSF001549 1 420 1.5E-124 T 14-10-2018 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit GO:0005737 Amico_0538 a49fef46f09988e5e8411ef8eb00425c 420 TIGRFAM TIGR00442 hisS: histidine--tRNA ligase 5 408 1.3E-152 T 14-10-2018 IPR015807 Histidine-tRNA ligase GO:0004821|GO:0005524|GO:0006427 KEGG: 00970+6.1.1.21 Amico_0538 a49fef46f09988e5e8411ef8eb00425c 420 SUPERFAMILY SSF52954 327 419 6.19E-24 T 14-10-2018 Amico_1778 374da7cf34296e7b73dc8d1290d43024 324 Gene3D G3DSA:1.10.3720.10 87 312 1.1E-13 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1778 374da7cf34296e7b73dc8d1290d43024 324 SUPERFAMILY SSF161098 88 306 9.37E-11 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1778 374da7cf34296e7b73dc8d1290d43024 324 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 318 6.1E-36 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0959 4c4f7a589092e6a7bd6fe52cfc07c39b 569 Pfam PF05833 Fibronectin-binding protein A N-terminus (FbpA) 7 429 3.6E-62 T 14-10-2018 Amico_0959 4c4f7a589092e6a7bd6fe52cfc07c39b 569 Pfam PF05670 Domain of unknown function (DUF814) 443 528 2.5E-19 T 14-10-2018 IPR008532 Domain of unknown function DUF814 Amico_0959 4c4f7a589092e6a7bd6fe52cfc07c39b 569 Gene3D G3DSA:2.30.310.10 1 168 6.1E-35 T 14-10-2018 Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 SUPERFAMILY SSF52210 125 287 3.66E-41 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 Pfam PF02629 CoA binding domain 7 99 5.4E-20 T 14-10-2018 IPR003781 CoA-binding GO:0048037 Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 SUPERFAMILY SSF51735 1 122 4.72E-32 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 SMART SM00881 4 100 6.9E-17 T 14-10-2018 IPR003781 CoA-binding GO:0048037 Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 Gene3D G3DSA:3.40.50.261 124 288 3.8E-60 T 14-10-2018 IPR016102 Succinyl-CoA synthetase-like KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384 Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 PRINTS PR01798 Succinyl-CoA synthase signature 208 221 7.2E-22 T 14-10-2018 Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 PRINTS PR01798 Succinyl-CoA synthase signature 177 195 7.2E-22 T 14-10-2018 Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 PRINTS PR01798 Succinyl-CoA synthase signature 82 99 7.2E-22 T 14-10-2018 Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 PRINTS PR01798 Succinyl-CoA synthase signature 240 257 7.2E-22 T 14-10-2018 Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 Pfam PF13607 Succinyl-CoA ligase like flavodoxin domain 146 284 1.5E-12 T 14-10-2018 IPR032875 Succinyl-CoA synthetase-like, flavodoxin domain Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 Gene3D G3DSA:3.40.50.720 1 123 4.2E-40 T 14-10-2018 Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 Hamap MF_01988 Succinate--CoA ligase [ADP-forming] subunit alpha [sucD]. 1 288 35.957 T 14-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Amico_0516 9755582fd6d72a5a0c478bf57046950f 288 PIRSF PIRSF001553 1 288 1.4E-107 T 14-10-2018 IPR005810 Succinyl-CoA ligase, alpha subunit GO:0003824 KEGG: 00020+6.2.1.5|KEGG: 00640+6.2.1.5|KEGG: 00660+6.2.1.5|KEGG: 00720+6.2.1.5|MetaCyc: PWY-5392|MetaCyc: PWY-5537|MetaCyc: PWY-5538|MetaCyc: PWY-5690|MetaCyc: PWY-5913|MetaCyc: PWY-6728|MetaCyc: PWY-6969|MetaCyc: PWY-7384|Reactome: R-HSA-71403 Amico_1515 8940aa6d198ee34561e9ba7aa91aa2be 120 Pfam PF00072 Response regulator receiver domain 5 115 4.0E-33 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1515 8940aa6d198ee34561e9ba7aa91aa2be 120 SUPERFAMILY SSF52172 3 119 3.56E-40 T 14-10-2018 IPR011006 CheY-like superfamily Amico_1515 8940aa6d198ee34561e9ba7aa91aa2be 120 SMART SM00448 3 115 7.5E-37 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1515 8940aa6d198ee34561e9ba7aa91aa2be 120 Gene3D G3DSA:3.40.50.2300 2 120 2.5E-39 T 14-10-2018 Amico_1461 7fef3b6eeb63180b0a864ec2d1186687 279 SUPERFAMILY SSF52518 11 261 3.19E-76 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1461 7fef3b6eeb63180b0a864ec2d1186687 279 Pfam PF00456 Transketolase, thiamine diphosphate binding domain 15 249 1.8E-46 T 14-10-2018 IPR005474 Transketolase, N-terminal KEGG: 00730+2.2.1.7|KEGG: 00900+2.2.1.7|MetaCyc: PWY-6891|MetaCyc: PWY-6892|MetaCyc: PWY-7560 Amico_1461 7fef3b6eeb63180b0a864ec2d1186687 279 Gene3D G3DSA:3.40.50.970 9 276 8.0E-91 T 14-10-2018 Amico_0339 8b94babcab22717fc4b9383b8232f591 209 Pfam PF01618 MotA/TolQ/ExbB proton channel family 67 184 2.7E-30 T 14-10-2018 IPR002898 MotA/TolQ/ExbB proton channel Amico_1507 b8b2ed5f925c854e901db7194efff1d5 578 Gene3D G3DSA:2.40.160.50 249 578 1.3E-39 T 14-10-2018 Amico_1507 b8b2ed5f925c854e901db7194efff1d5 578 Gene3D G3DSA:3.10.20.310 173 248 1.4E-19 T 14-10-2018 Amico_1507 b8b2ed5f925c854e901db7194efff1d5 578 Gene3D G3DSA:3.10.20.310 99 171 4.8E-14 T 14-10-2018 Amico_1507 b8b2ed5f925c854e901db7194efff1d5 578 Gene3D G3DSA:3.10.20.310 30 97 3.5E-13 T 14-10-2018 Amico_1507 b8b2ed5f925c854e901db7194efff1d5 578 Pfam PF07244 Surface antigen variable number repeat 34 97 8.0E-7 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Amico_1507 b8b2ed5f925c854e901db7194efff1d5 578 Pfam PF07244 Surface antigen variable number repeat 173 244 7.7E-13 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Amico_1507 b8b2ed5f925c854e901db7194efff1d5 578 Pfam PF07244 Surface antigen variable number repeat 99 160 8.8E-10 T 14-10-2018 IPR010827 POTRA domain, BamA/TamA-like GO:0019867 Amico_1507 b8b2ed5f925c854e901db7194efff1d5 578 Pfam PF01103 Surface antigen 272 575 1.4E-37 T 14-10-2018 IPR000184 Bacterial surface antigen (D15) GO:0019867 Reactome: R-HSA-1268020|Reactome: R-HSA-8949613 Amico_1721 8334f0b0b224c7bb77492d530f6facf0 371 Gene3D G3DSA:3.40.50.2000 4 170 4.9E-6 T 14-10-2018 Amico_1721 8334f0b0b224c7bb77492d530f6facf0 371 Gene3D G3DSA:3.40.50.2000 171 353 4.1E-30 T 14-10-2018 Amico_1721 8334f0b0b224c7bb77492d530f6facf0 371 SUPERFAMILY SSF53756 24 369 1.3E-44 T 14-10-2018 Amico_1721 8334f0b0b224c7bb77492d530f6facf0 371 Pfam PF00534 Glycosyl transferases group 1 188 346 7.8E-19 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 Gene3D G3DSA:3.30.110.120 255 372 4.8E-145 T 14-10-2018 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 Pfam PF00708 Acylphosphatase 6 88 7.9E-21 T 14-10-2018 IPR001792 Acylphosphatase-like domain KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 Gene3D G3DSA:3.90.870.50 8 363 4.8E-145 T 14-10-2018 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 ProSitePatterns PS00150 Acylphosphatase signature 1. 9 19 - T 14-10-2018 IPR017968 Acylphosphatase, conserved site KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 SUPERFAMILY SSF54975 6 79 1.79E-19 T 14-10-2018 IPR036046 Acylphosphatase-like domain superfamily KEGG: 00620+3.6.1.7|KEGG: 00627+3.6.1.7 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 Pfam PF01300 Telomere recombination 212 385 2.5E-50 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 TIGRFAM TIGR00143 hypF: carbamoyltransferase HypF 9 749 4.0E-224 T 14-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 PIRSF PIRSF006256 1 757 8.1E-263 T 14-10-2018 IPR004421 Carbamoyltransferase, HypF-type GO:0016743|GO:0046872|GO:0046944 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 Pfam PF07503 HypF finger 159 192 3.2E-13 T 14-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 Pfam PF07503 HypF finger 109 142 1.1E-17 T 14-10-2018 IPR011125 Zinc finger, HypF-type GO:0008270 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 Gene3D G3DSA:3.30.420.360 384 749 1.0E-111 T 14-10-2018 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 Gene3D G3DSA:3.30.420.350 487 736 1.0E-111 T 14-10-2018 Amico_1046 91262ff2af6b066c2571aeb96b149ef9 766 SUPERFAMILY SSF55821 176 392 1.71E-48 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Amico_0640 045f27ed367dd7e7637ef85180441ee3 61 ProSitePatterns PS00527 Ribosomal protein S14 signature. 23 45 - T 14-10-2018 IPR018271 Ribosomal protein S14, conserved site GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0640 045f27ed367dd7e7637ef85180441ee3 61 Gene3D G3DSA:4.10.830.10 1 61 1.8E-26 T 14-10-2018 Amico_0640 045f27ed367dd7e7637ef85180441ee3 61 Pfam PF00253 Ribosomal protein S14p/S29e 10 60 5.0E-22 T 14-10-2018 IPR001209 Ribosomal protein S14 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0640 045f27ed367dd7e7637ef85180441ee3 61 Hamap MF_01364_B 30S ribosomal protein S14 type Z [rpsZ]. 1 61 23.863 T 14-10-2018 IPR023053 Ribosomal protein S14, type Z Amico_0640 045f27ed367dd7e7637ef85180441ee3 61 SUPERFAMILY SSF57716 5 61 2.07E-18 T 14-10-2018 Amico_1031 7d56295e56cad257f5f0891c16a86edc 413 PIRSF PIRSF001109 1 413 2.5E-171 T 14-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Amico_1031 7d56295e56cad257f5f0891c16a86edc 413 SMART SM00997 184 345 9.9E-101 T 14-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Amico_1031 7d56295e56cad257f5f0891c16a86edc 413 TIGRFAM TIGR00936 ahcY: adenosylhomocysteinase 4 413 1.4E-176 T 14-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Amico_1031 7d56295e56cad257f5f0891c16a86edc 413 SUPERFAMILY SSF52283 2 412 6.8E-84 T 14-10-2018 Amico_1031 7d56295e56cad257f5f0891c16a86edc 413 Pfam PF05221 S-adenosyl-L-homocysteine hydrolase 4 134 2.5E-29 T 14-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Amico_1031 7d56295e56cad257f5f0891c16a86edc 413 SMART SM00996 2 413 5.5E-119 T 14-10-2018 IPR000043 Adenosylhomocysteinase-like KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Amico_1031 7d56295e56cad257f5f0891c16a86edc 413 Gene3D G3DSA:3.40.50.720 186 345 1.2E-166 T 14-10-2018 Amico_1031 7d56295e56cad257f5f0891c16a86edc 413 ProSitePatterns PS00739 S-adenosyl-L-homocysteine hydrolase signature 2. 206 222 - T 14-10-2018 IPR020082 S-adenosyl-L-homocysteine hydrolase, conserved site GO:0004013 KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Amico_1031 7d56295e56cad257f5f0891c16a86edc 413 SUPERFAMILY SSF51735 184 346 9.65E-67 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1031 7d56295e56cad257f5f0891c16a86edc 413 Pfam PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain 184 345 1.1E-51 T 14-10-2018 IPR015878 S-adenosyl-L-homocysteine hydrolase, NAD binding domain KEGG: 00270+3.3.1.1|MetaCyc: PWY-5041 Amico_1031 7d56295e56cad257f5f0891c16a86edc 413 Gene3D G3DSA:3.40.50.1480 5 404 1.2E-166 T 14-10-2018 Amico_1516 194e399ae9312a3a703d9c9d73048f6b 261 SUPERFAMILY SSF55781 30 174 6.38E-7 T 14-10-2018 Amico_1516 194e399ae9312a3a703d9c9d73048f6b 261 PIRSF PIRSF011572 1 256 2.5E-82 T 14-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 Amico_1516 194e399ae9312a3a703d9c9d73048f6b 261 Hamap MF_00621 GTP-sensing transcriptional pleiotropic repressor CodY [codY]. 1 261 85.517 T 14-10-2018 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY GO:0003677|GO:0003700|GO:0005525|GO:0045892 Amico_1516 194e399ae9312a3a703d9c9d73048f6b 261 Gene3D G3DSA:3.30.450.40 2 163 3.6E-41 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_1516 194e399ae9312a3a703d9c9d73048f6b 261 Pfam PF06018 CodY GAF-like domain 4 177 2.8E-37 T 14-10-2018 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal GO:0003677|GO:0005525 Amico_1516 194e399ae9312a3a703d9c9d73048f6b 261 Pfam PF08222 CodY helix-turn-helix domain 198 253 1.7E-30 T 14-10-2018 IPR013198 GTP-sensing helix-turn-helix, CodY, C-terminal Amico_1516 194e399ae9312a3a703d9c9d73048f6b 261 SUPERFAMILY SSF46785 167 253 2.07E-35 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1516 194e399ae9312a3a703d9c9d73048f6b 261 Gene3D G3DSA:1.10.10.10 164 258 4.1E-39 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0061 bbbcb3980b8c5c4f17d86865212e06c1 80 SUPERFAMILY SSF52833 1 75 1.01E-19 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Amico_0061 bbbcb3980b8c5c4f17d86865212e06c1 80 Gene3D G3DSA:3.40.30.10 1 75 9.7E-30 T 14-10-2018 Amico_0061 bbbcb3980b8c5c4f17d86865212e06c1 80 PIRSF PIRSF037031 1 77 1.0E-31 T 14-10-2018 IPR005243 Redox-active disulphide protein 2 Amico_0061 bbbcb3980b8c5c4f17d86865212e06c1 80 TIGRFAM TIGR00412 redox_disulf_2: redox-active disulfide protein 2 1 76 8.9E-26 T 14-10-2018 IPR005243 Redox-active disulphide protein 2 Amico_0061 bbbcb3980b8c5c4f17d86865212e06c1 80 Pfam PF13192 Thioredoxin domain 1 75 2.3E-26 T 14-10-2018 IPR012336 Thioredoxin-like fold Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 SUPERFAMILY SSF52374 4 648 2.33E-150 T 14-10-2018 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 Gene3D G3DSA:1.10.730.20 641 926 3.2E-93 T 14-10-2018 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 Pfam PF08264 Anticodon-binding domain of tRNA 686 843 9.3E-32 T 14-10-2018 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding GO:0004812|GO:0006418 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 Hamap MF_02002 Isoleucine--tRNA ligase [ileS]. 3 925 20.361 T 14-10-2018 IPR023585 Isoleucine-tRNA ligase, type 1 GO:0004822 KEGG: 00970+6.1.1.5|Reactome: R-HSA-379726 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 SUPERFAMILY SSF50677 204 400 1.15E-50 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 Gene3D G3DSA:3.40.50.620 26 630 1.0E-243 T 14-10-2018 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 Gene3D G3DSA:3.90.740.10 196 405 1.0E-243 T 14-10-2018 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain GO:0002161|GO:0006418 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 TIGRFAM TIGR00392 ileS: isoleucine--tRNA ligase 16 844 7.2E-285 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 SUPERFAMILY SSF47323 653 925 2.24E-66 T 14-10-2018 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 ProSitePatterns PS00178 Aminoacyl-transfer RNA synthetases class-I signature. 59 70 - T 14-10-2018 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 Pfam PF00133 tRNA synthetases class I (I, L, M and V) 29 642 4.6E-204 T 14-10-2018 IPR002300 Aminoacyl-tRNA synthetase, class Ia GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 562 571 4.1E-31 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 52 63 4.1E-31 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 528 541 4.1E-31 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 398 413 4.1E-31 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Amico_0961 8a3e9346fa383f8463f5629530fd58ae 926 PRINTS PR00984 Isoleucyl-tRNA synthetase signature 235 258 4.1E-31 T 14-10-2018 IPR002301 Isoleucine-tRNA ligase GO:0000166|GO:0004822|GO:0005524|GO:0005737|GO:0006428 KEGG: 00970+6.1.1.5 Amico_1520 452d15a11ebaef74bee7cfc5a72d0ee4 438 Hamap MF_01037 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO [trmFO]. 7 435 34.631 T 14-10-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 Amico_1520 452d15a11ebaef74bee7cfc5a72d0ee4 438 Pfam PF01134 Glucose inhibited division protein A 7 364 5.0E-101 T 14-10-2018 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related GO:0008033|GO:0050660 Reactome: R-HSA-6787450 Amico_1520 452d15a11ebaef74bee7cfc5a72d0ee4 438 TIGRFAM TIGR00137 gid_trmFO: tRNA:m(5)U-54 methyltransferase 6 434 1.4E-179 T 14-10-2018 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO GO:0005737|GO:0008033|GO:0047151|GO:0050660 Amico_1520 452d15a11ebaef74bee7cfc5a72d0ee4 438 SUPERFAMILY SSF51905 6 367 7.94E-28 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1520 452d15a11ebaef74bee7cfc5a72d0ee4 438 Gene3D G3DSA:3.50.50.60 4 185 7.6E-49 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1520 452d15a11ebaef74bee7cfc5a72d0ee4 438 Gene3D G3DSA:3.50.50.60 293 437 1.9E-43 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_0785 9429adb7dbe5cf223be4b550fb44ca1d 303 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 18 78 1.4E-15 T 14-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Amico_0785 9429adb7dbe5cf223be4b550fb44ca1d 303 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 119 303 1.8E-33 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0785 9429adb7dbe5cf223be4b550fb44ca1d 303 SUPERFAMILY SSF161098 97 283 5.76E-31 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0785 9429adb7dbe5cf223be4b550fb44ca1d 303 Gene3D G3DSA:1.10.3720.10 91 301 6.2E-23 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1200 4fa4421b3ad81121ef5cc5b74b9a448f 371 Gene3D G3DSA:3.40.50.12740 2 135 6.3E-28 T 14-10-2018 Amico_1200 4fa4421b3ad81121ef5cc5b74b9a448f 371 Gene3D G3DSA:3.40.50.300 136 366 4.4E-39 T 14-10-2018 Amico_1200 4fa4421b3ad81121ef5cc5b74b9a448f 371 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 132 363 1.8E-10 T 14-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Amico_1200 4fa4421b3ad81121ef5cc5b74b9a448f 371 SMART SM00448 2 115 8.9E-23 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1200 4fa4421b3ad81121ef5cc5b74b9a448f 371 SUPERFAMILY SSF52540 132 367 1.44E-34 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1200 4fa4421b3ad81121ef5cc5b74b9a448f 371 SUPERFAMILY SSF52172 1 119 2.99E-26 T 14-10-2018 IPR011006 CheY-like superfamily Amico_1200 4fa4421b3ad81121ef5cc5b74b9a448f 371 Pfam PF00072 Response regulator receiver domain 4 115 3.1E-22 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 SUPERFAMILY SSF48179 176 329 9.35E-54 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 6 23 4.7E-41 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 56 83 4.7E-41 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 170 194 4.7E-41 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 195 219 4.7E-41 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 235 252 4.7E-41 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 PRINTS PR00077 NAD-dependent glycerol-3-phosphate dehydrogenase signature 130 150 4.7E-41 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 ProSitePatterns PS00957 NAD-dependent glycerol-3-phosphate dehydrogenase signature. 185 206 - T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 5 154 1.6E-42 T 14-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 PIRSF PIRSF000114 1 329 4.1E-97 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 Pfam PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus 177 315 3.3E-50 T 14-10-2018 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal GO:0004367|GO:0005975|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 SUPERFAMILY SSF51735 4 175 8.87E-50 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 Gene3D G3DSA:1.10.1040.10 186 334 2.0E-49 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 Hamap MF_00394 Glycerol-3-phosphate dehydrogenase [NAD(P)+] [gpsA]. 2 319 34.691 T 14-10-2018 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent GO:0004367|GO:0006072|GO:0009331|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Amico_1622 3c2052a6ce6ce82840aabc33aab8bef6 336 Gene3D G3DSA:3.40.50.720 1 184 6.9E-60 T 14-10-2018 Amico_0841 af1d15e67e0bcfcf7749b5b90997321e 424 TIGRFAM TIGR00350 lytR_cpsA_psr: cell envelope-related function transcriptional attenuator common domain 64 211 1.9E-38 T 14-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain Amico_0841 af1d15e67e0bcfcf7749b5b90997321e 424 Gene3D G3DSA:1.10.260.150 33 320 5.0E-79 T 14-10-2018 Amico_0841 af1d15e67e0bcfcf7749b5b90997321e 424 Pfam PF13399 LytR cell envelope-related transcriptional attenuator 321 409 2.1E-10 T 14-10-2018 IPR027381 Putative LytR/CpsA/Psr regulator, C-terminal domain Amico_0841 af1d15e67e0bcfcf7749b5b90997321e 424 Pfam PF03816 Cell envelope-related transcriptional attenuator domain 64 211 5.8E-44 T 14-10-2018 IPR004474 Cell envelope-related transcriptional attenuator domain Amico_0070 dc33ba5d6cbb8e91fc8765374da43cd6 261 SUPERFAMILY SSF52540 8 252 1.24E-75 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0070 dc33ba5d6cbb8e91fc8765374da43cd6 261 PIRSF PIRSF039085 5 258 1.8E-108 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Amico_0070 dc33ba5d6cbb8e91fc8765374da43cd6 261 Pfam PF00005 ABC transporter 24 182 8.4E-33 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0070 dc33ba5d6cbb8e91fc8765374da43cd6 261 SMART SM00382 33 230 8.4E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0070 dc33ba5d6cbb8e91fc8765374da43cd6 261 Gene3D G3DSA:3.40.50.300 7 260 6.1E-73 T 14-10-2018 Amico_0388 1f05a1c2aa6e95ca9a05eeadbcca66d3 243 TIGRFAM TIGR01163 rpe: ribulose-phosphate 3-epimerase 15 225 1.8E-74 T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Amico_0388 1f05a1c2aa6e95ca9a05eeadbcca66d3 243 PIRSF PIRSF001461 11 236 5.3E-80 T 14-10-2018 IPR026019 Ribulose-phosphate 3-epimerase GO:0004750|GO:0006098 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Amico_0388 1f05a1c2aa6e95ca9a05eeadbcca66d3 243 Pfam PF00834 Ribulose-phosphate 3 epimerase family 16 212 3.7E-68 T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Amico_0388 1f05a1c2aa6e95ca9a05eeadbcca66d3 243 Gene3D G3DSA:3.20.20.70 15 230 5.4E-75 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0388 1f05a1c2aa6e95ca9a05eeadbcca66d3 243 SUPERFAMILY SSF51366 14 226 3.49E-65 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Amico_0388 1f05a1c2aa6e95ca9a05eeadbcca66d3 243 ProSitePatterns PS01085 Ribulose-phosphate 3-epimerase family signature 1. 42 56 - T 14-10-2018 IPR000056 Ribulose-phosphate 3-epimerase-like GO:0005975|GO:0016857 KEGG: 00030+5.1.3.1|KEGG: 00040+5.1.3.1|KEGG: 00710+5.1.3.1|MetaCyc: PWY-1861|MetaCyc: PWY-5723|Reactome: R-HSA-71336 Amico_1433 6020ad220eba7ecfbde211d485d4703d 377 Gene3D G3DSA:3.40.50.2300 48 355 1.3E-103 T 14-10-2018 Amico_1433 6020ad220eba7ecfbde211d485d4703d 377 SUPERFAMILY SSF53822 24 370 1.73E-88 T 14-10-2018 IPR028082 Periplasmic binding protein-like I Amico_1433 6020ad220eba7ecfbde211d485d4703d 377 Pfam PF13458 Periplasmic binding protein 25 366 2.1E-65 T 14-10-2018 IPR028081 Leucine-binding protein domain Amico_1433 6020ad220eba7ecfbde211d485d4703d 377 Gene3D G3DSA:3.40.50.2300 141 271 1.3E-103 T 14-10-2018 Amico_1205 23f8a8a049db2a0621beadb2582f7689 158 Gene3D G3DSA:1.20.120.1220 2 112 2.4E-9 T 14-10-2018 Amico_1205 23f8a8a049db2a0621beadb2582f7689 158 Pfam PF01478 Type IV leader peptidase family 4 102 3.0E-16 T 14-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 Amico_1209 0c6785c322aa0609b15f7a1551932023 381 SMART SM00387 280 378 1.3E-6 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_1209 0c6785c322aa0609b15f7a1551932023 381 Gene3D G3DSA:3.30.565.10 242 380 4.5E-25 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1209 0c6785c322aa0609b15f7a1551932023 381 Pfam PF07730 Histidine kinase 179 242 3.2E-9 T 14-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Amico_1209 0c6785c322aa0609b15f7a1551932023 381 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 284 375 2.6E-9 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_1209 0c6785c322aa0609b15f7a1551932023 381 SUPERFAMILY SSF55874 252 375 4.32E-18 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1713 d1bfaad487bab7ec3aee4fa52292a9fb 753 Pfam PF02563 Polysaccharide biosynthesis/export protein 148 221 9.7E-17 T 14-10-2018 IPR003715 Polysaccharide export protein GO:0015159|GO:0015774|GO:0016020 Amico_1713 d1bfaad487bab7ec3aee4fa52292a9fb 753 Pfam PF10531 SLBB domain 494 534 6.9E-9 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1713 d1bfaad487bab7ec3aee4fa52292a9fb 753 Pfam PF10531 SLBB domain 313 356 1.4E-8 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1713 d1bfaad487bab7ec3aee4fa52292a9fb 753 Pfam PF10531 SLBB domain 228 277 7.0E-8 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1713 d1bfaad487bab7ec3aee4fa52292a9fb 753 Pfam PF10531 SLBB domain 400 452 0.0015 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1713 d1bfaad487bab7ec3aee4fa52292a9fb 753 Gene3D G3DSA:3.30.1950.10 157 221 7.1E-7 T 14-10-2018 Amico_1713 d1bfaad487bab7ec3aee4fa52292a9fb 753 Gene3D G3DSA:3.10.560.10 632 720 9.1E-9 T 14-10-2018 Amico_1713 d1bfaad487bab7ec3aee4fa52292a9fb 753 Gene3D G3DSA:3.10.560.10 222 307 5.1E-18 T 14-10-2018 Amico_1713 d1bfaad487bab7ec3aee4fa52292a9fb 753 Gene3D G3DSA:3.10.560.10 309 391 1.7E-8 T 14-10-2018 Amico_1713 d1bfaad487bab7ec3aee4fa52292a9fb 753 Gene3D G3DSA:3.10.560.10 392 484 6.7E-10 T 14-10-2018 Amico_1713 d1bfaad487bab7ec3aee4fa52292a9fb 753 Pfam PF06251 Capsule biosynthesis GfcC 561 687 4.9E-6 T 14-10-2018 IPR010425 Domain of unknown function DUF1017 Amico_0634 82dfed0fde5557de9c0b7fd18eefa20e 140 ProSitePatterns PS00586 Ribosomal protein L16 signature 1. 59 70 - T 14-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0634 82dfed0fde5557de9c0b7fd18eefa20e 140 SUPERFAMILY SSF54686 1 137 2.62E-56 T 14-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 Amico_0634 82dfed0fde5557de9c0b7fd18eefa20e 140 Pfam PF00252 Ribosomal protein L16p/L10e 4 132 4.7E-50 T 14-10-2018 IPR016180 Ribosomal protein L10e/L16 GO:0003735|GO:0005840|GO:0006412 Amico_0634 82dfed0fde5557de9c0b7fd18eefa20e 140 Gene3D G3DSA:3.90.1170.10 1 138 1.8E-54 T 14-10-2018 IPR036920 Ribosomal protein L10e/L16 superfamily GO:0003735|GO:0005840|GO:0006412 Amico_0634 82dfed0fde5557de9c0b7fd18eefa20e 140 PRINTS PR00060 Ribosomal protein L16 signature 24 36 1.2E-37 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0634 82dfed0fde5557de9c0b7fd18eefa20e 140 PRINTS PR00060 Ribosomal protein L16 signature 88 117 1.2E-37 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0634 82dfed0fde5557de9c0b7fd18eefa20e 140 PRINTS PR00060 Ribosomal protein L16 signature 58 87 1.2E-37 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0634 82dfed0fde5557de9c0b7fd18eefa20e 140 PRINTS PR00060 Ribosomal protein L16 signature 42 53 1.2E-37 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0634 82dfed0fde5557de9c0b7fd18eefa20e 140 Hamap MF_01342 50S ribosomal protein L16 [rplP]. 1 134 37.857 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0634 82dfed0fde5557de9c0b7fd18eefa20e 140 TIGRFAM TIGR01164 rplP_bact: ribosomal protein uL16 2 127 3.5E-57 T 14-10-2018 IPR000114 Ribosomal protein L16 GO:0003735|GO:0006412|GO:0019843 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0634 82dfed0fde5557de9c0b7fd18eefa20e 140 ProSitePatterns PS00701 Ribosomal protein L16 signature 2. 82 93 - T 14-10-2018 IPR020798 Ribosomal protein L16, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0755 3e23f6707ffb706d77410b73178cc275 428 Pfam PF03471 Transporter associated domain 344 417 7.0E-18 T 14-10-2018 IPR005170 Transporter-associated domain Amico_0755 3e23f6707ffb706d77410b73178cc275 428 SUPERFAMILY SSF56176 341 423 3.54E-17 T 14-10-2018 IPR036318 FAD-binding, type PCMH-like superfamily GO:0050660 Amico_0755 3e23f6707ffb706d77410b73178cc275 428 SUPERFAMILY SSF54631 201 341 8.84E-36 T 14-10-2018 Amico_0755 3e23f6707ffb706d77410b73178cc275 428 Pfam PF01595 Domain of unknown function DUF21 13 190 8.3E-42 T 14-10-2018 IPR002550 CNNM, transmembrane domain Amico_0755 3e23f6707ffb706d77410b73178cc275 428 Pfam PF00571 CBS domain 277 326 7.4E-9 T 14-10-2018 IPR000644 CBS domain Amico_0755 3e23f6707ffb706d77410b73178cc275 428 Pfam PF00571 CBS domain 212 262 0.0031 T 14-10-2018 IPR000644 CBS domain Amico_0755 3e23f6707ffb706d77410b73178cc275 428 SMART SM01091 341 419 5.5E-18 T 14-10-2018 IPR005170 Transporter-associated domain Amico_0755 3e23f6707ffb706d77410b73178cc275 428 Gene3D G3DSA:3.30.465.10 340 427 4.0E-17 T 14-10-2018 IPR016169 FAD-binding, type PCMH, subdomain 2 Amico_0755 3e23f6707ffb706d77410b73178cc275 428 SMART SM00116 215 264 2.1 T 14-10-2018 IPR000644 CBS domain Amico_0755 3e23f6707ffb706d77410b73178cc275 428 SMART SM00116 278 326 0.0012 T 14-10-2018 IPR000644 CBS domain Amico_0755 3e23f6707ffb706d77410b73178cc275 428 Gene3D G3DSA:3.10.580.10 187 339 2.3E-55 T 14-10-2018 Amico_0606 729c7189612774c0610ba16e9153ee41 267 TIGRFAM TIGR01968 minD_bact: septum site-determining protein MinD 4 264 4.1E-116 T 14-10-2018 IPR010223 ATP binding protein MinD, bacterial-type GO:0016887 Amico_0606 729c7189612774c0610ba16e9153ee41 267 PIRSF PIRSF003092 1 267 2.6E-89 T 14-10-2018 IPR025501 ATP binding protein MinD Amico_0606 729c7189612774c0610ba16e9153ee41 267 Gene3D G3DSA:3.40.50.300 3 254 5.5E-66 T 14-10-2018 Amico_0606 729c7189612774c0610ba16e9153ee41 267 SUPERFAMILY SSF52540 3 244 5.71E-55 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0606 729c7189612774c0610ba16e9153ee41 267 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 6 220 1.9E-27 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Amico_0861 720a15e4b6dc1b478bb32d31d27302a7 349 TIGRFAM TIGR00113 queA: S-adenosylmethionine:tRNA ribosyltransferase-isomerase 7 348 2.0E-126 T 14-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Amico_0861 720a15e4b6dc1b478bb32d31d27302a7 349 Gene3D G3DSA:2.40.10.240 69 168 8.4E-117 T 14-10-2018 Amico_0861 720a15e4b6dc1b478bb32d31d27302a7 349 SUPERFAMILY SSF111337 7 348 7.72E-122 T 14-10-2018 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Amico_0861 720a15e4b6dc1b478bb32d31d27302a7 349 Gene3D G3DSA:3.40.1780.10 20 348 8.4E-117 T 14-10-2018 Amico_0861 720a15e4b6dc1b478bb32d31d27302a7 349 Pfam PF02547 Queuosine biosynthesis protein 9 348 5.9E-127 T 14-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Amico_0861 720a15e4b6dc1b478bb32d31d27302a7 349 Hamap MF_00113 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [queA]. 6 349 42.948 T 14-10-2018 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA GO:0008616|GO:0016740|GO:0016853 MetaCyc: PWY-6700 Amico_1113 7412a669165ff252a8ac588e45d03d00 174 Pfam PF04985 Phage tail tube protein FII 6 173 1.5E-47 T 14-10-2018 IPR006498 Tail tube protein Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 TIGRFAM TIGR03654 L6_bact: ribosomal protein uL6 2 176 4.8E-73 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 SUPERFAMILY SSF56053 83 176 3.66E-35 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 Gene3D G3DSA:3.90.930.12 83 179 5.8E-39 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 Gene3D G3DSA:3.90.930.12 1 82 8.3E-30 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 SUPERFAMILY SSF56053 1 82 8.64E-25 T 14-10-2018 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 Hamap MF_01365_B 50S ribosomal protein L6 [rplF]. 1 176 37.222 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 Pfam PF00347 Ribosomal protein L6 13 82 4.1E-16 T 14-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 Pfam PF00347 Ribosomal protein L6 90 164 3.4E-19 T 14-10-2018 IPR020040 Ribosomal protein L6, alpha-beta domain GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 ProSitePatterns PS00525 Ribosomal protein L6 signature 1. 154 162 - T 14-10-2018 IPR002358 Ribosomal protein L6, conserved site GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 PIRSF PIRSF002162 1 177 1.9E-46 T 14-10-2018 IPR000702 Ribosomal protein L6 GO:0003735|GO:0005840|GO:0006412|GO:0019843 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72689|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 PRINTS PR00059 Ribosomal protein L6 signature 71 96 8.6E-33 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 PRINTS PR00059 Ribosomal protein L6 signature 141 162 8.6E-33 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Amico_0642 d83d054c694a2263d3de7e5eb1066d09 179 PRINTS PR00059 Ribosomal protein L6 signature 99 115 8.6E-33 T 14-10-2018 IPR019906 Ribosomal protein L6, bacterial-type GO:0003735|GO:0005840|GO:0006412|GO:0019843 Amico_0783 d17adafcb72e2921bd87b38f26bfeaa5 271 Gene3D G3DSA:1.10.3730.10 161 264 7.3E-35 T 14-10-2018 Amico_0783 d17adafcb72e2921bd87b38f26bfeaa5 271 TIGRFAM TIGR00112 proC: pyrroline-5-carboxylate reductase 9 262 3.0E-70 T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Amico_0783 d17adafcb72e2921bd87b38f26bfeaa5 271 Pfam PF03807 NADP oxidoreductase coenzyme F420-dependent 8 96 3.3E-12 T 14-10-2018 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal Amico_0783 d17adafcb72e2921bd87b38f26bfeaa5 271 SUPERFAMILY SSF48179 158 265 5.1E-33 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Amico_0783 d17adafcb72e2921bd87b38f26bfeaa5 271 Pfam PF14748 Pyrroline-5-carboxylate reductase dimerisation 158 262 6.1E-34 T 14-10-2018 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Amico_0783 d17adafcb72e2921bd87b38f26bfeaa5 271 Hamap MF_01925 Pyrroline-5-carboxylate reductase [proC]. 7 262 23.579 T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Amico_0783 d17adafcb72e2921bd87b38f26bfeaa5 271 SUPERFAMILY SSF51735 8 153 4.15E-26 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0783 d17adafcb72e2921bd87b38f26bfeaa5 271 Gene3D G3DSA:3.40.50.720 1 160 1.1E-34 T 14-10-2018 Amico_0783 d17adafcb72e2921bd87b38f26bfeaa5 271 PIRSF PIRSF000193 7 265 1.8E-64 T 14-10-2018 IPR000304 Pyrroline-5-carboxylate reductase GO:0004735|GO:0006561|GO:0055114 KEGG: 00330+1.5.1.2|MetaCyc: PWY-3341|MetaCyc: PWY-4981|MetaCyc: PWY-6344|Reactome: R-HSA-70614 Amico_0867 e3ec5b40500373f7f9865be15c798571 249 SUPERFAMILY SSF75625 5 246 1.96E-96 T 14-10-2018 IPR029072 YebC-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Amico_0867 e3ec5b40500373f7f9865be15c798571 249 Hamap MF_00693 Probable transcriptional regulatory protein YebC [yebC]. 3 240 36.358 T 14-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Amico_0867 e3ec5b40500373f7f9865be15c798571 249 Gene3D G3DSA:1.10.10.200 1 81 1.8E-35 T 14-10-2018 IPR017856 Integrase-like, N-terminal Amico_0867 e3ec5b40500373f7f9865be15c798571 249 TIGRFAM TIGR01033 TIGR01033: DNA-binding regulatory protein, YebC/PmpR family 2 238 7.2E-100 T 14-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Amico_0867 e3ec5b40500373f7f9865be15c798571 249 Gene3D G3DSA:3.30.70.980 84 237 8.3E-57 T 14-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Amico_0867 e3ec5b40500373f7f9865be15c798571 249 Gene3D G3DSA:3.30.70.980 133 205 8.3E-57 T 14-10-2018 IPR026564 Transcriptional regulator TACO1-like, domain 3 Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Amico_0867 e3ec5b40500373f7f9865be15c798571 249 Pfam PF01709 Transcriptional regulator 5 238 1.1E-98 T 14-10-2018 IPR002876 Transcriptional regulator TACO1-like Reactome: R-HSA-5628897|Reactome: R-HSA-611105 Amico_0786 2d423e832f15e156720b2fdbe4745ed0 318 Pfam PF00005 ABC transporter 24 181 2.3E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0786 2d423e832f15e156720b2fdbe4745ed0 318 SUPERFAMILY SSF52540 4 251 1.28E-67 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0786 2d423e832f15e156720b2fdbe4745ed0 318 TIGRFAM TIGR01727 oligo_HPY: oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain 231 317 1.8E-28 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Amico_0786 2d423e832f15e156720b2fdbe4745ed0 318 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0786 2d423e832f15e156720b2fdbe4745ed0 318 Pfam PF08352 Oligopeptide/dipeptide transporter, C-terminal region 233 297 7.8E-19 T 14-10-2018 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal GO:0000166|GO:0005524|GO:0015833 Amico_0786 2d423e832f15e156720b2fdbe4745ed0 318 SMART SM00382 33 239 5.3E-15 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0786 2d423e832f15e156720b2fdbe4745ed0 318 Gene3D G3DSA:3.40.50.300 1 318 1.5E-100 T 14-10-2018 Amico_0431 7353689f32cd8850267737f7b3c0fb5c 238 Pfam PF04366 Las17-binding protein actin regulator 112 232 1.9E-29 T 14-10-2018 IPR007461 Ysc84 actin-binding domain Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 Hamap MF_01897 DNA gyrase subunit A [gyrA]. 2 811 23.428 T 14-10-2018 IPR005743 DNA gyrase, subunit A GO:0003677|GO:0003918|GO:0005524|GO:0005694|GO:0006265 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 SUPERFAMILY SSF101904 505 816 4.97E-83 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 SUPERFAMILY SSF56719 6 494 1.44E-175 T 14-10-2018 IPR013760 DNA topoisomerase, type IIA-like domain superfamily GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 SMART SM00434 16 471 3.6E-269 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 Gene3D G3DSA:3.90.199.10 37 493 1.7E-205 T 14-10-2018 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta GO:0003677|GO:0003918|GO:0005524|GO:0006259|GO:0006265 Reactome: R-HSA-4615885 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 TIGRFAM TIGR01063 gyrA: DNA gyrase, A subunit 14 809 0.0 T 14-10-2018 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 510 556 2.1E-5 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 615 658 7.5E-6 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 763 810 3.1E-10 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 561 605 0.0029 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 715 757 5.2E-9 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 Pfam PF03989 DNA gyrase C-terminal domain, beta-propeller 662 708 1.6E-15 T 14-10-2018 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat GO:0003677|GO:0003916|GO:0005524|GO:0005694|GO:0006265 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 Gene3D G3DSA:1.10.268.10 376 464 1.7E-205 T 14-10-2018 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily GO:0003677|GO:0003918|GO:0005524 Reactome: R-HSA-4615885 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 Pfam PF00521 DNA gyrase/topoisomerase IV, subunit A 37 478 2.2E-158 T 14-10-2018 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal GO:0003677|GO:0003918|GO:0005524|GO:0006265 Reactome: R-HSA-4615885 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 Gene3D G3DSA:3.30.1360.40 243 339 1.7E-205 T 14-10-2018 Amico_0252 c4b2d600e7598baf64ce3b8ec1ce5895 817 Gene3D G3DSA:2.120.10.90 502 810 3.5E-97 T 14-10-2018 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal Amico_0670 4a5b1f4f82eda0cd53c630cd4a1ffadd 276 Pfam PF08282 haloacid dehalogenase-like hydrolase 6 256 1.5E-36 T 14-10-2018 Amico_0670 4a5b1f4f82eda0cd53c630cd4a1ffadd 276 Gene3D G3DSA:3.30.1240.10 83 186 2.7E-41 T 14-10-2018 Amico_0670 4a5b1f4f82eda0cd53c630cd4a1ffadd 276 Gene3D G3DSA:3.40.50.1000 5 257 2.7E-41 T 14-10-2018 IPR023214 HAD superfamily Amico_0670 4a5b1f4f82eda0cd53c630cd4a1ffadd 276 SUPERFAMILY SSF56784 1 258 1.27E-43 T 14-10-2018 IPR036412 HAD-like superfamily Amico_0670 4a5b1f4f82eda0cd53c630cd4a1ffadd 276 TIGRFAM TIGR01484 HAD-SF-IIB: HAD hydrolase, family IIB 5 229 6.6E-21 T 14-10-2018 IPR006379 HAD-superfamily hydrolase, subfamily IIB Reactome: R-HSA-446205 Amico_0472 90c6d0231025f48592fcc3f5d431973a 157 Pfam PF01641 SelR domain 35 153 1.2E-52 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Amico_0472 90c6d0231025f48592fcc3f5d431973a 157 Hamap MF_01400 Peptide methionine sulfoxide reductase MsrB [msrB]. 32 155 35.56 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Amico_0472 90c6d0231025f48592fcc3f5d431973a 157 SUPERFAMILY SSF51316 30 156 1.36E-58 T 14-10-2018 IPR011057 Mss4-like superfamily Amico_0472 90c6d0231025f48592fcc3f5d431973a 157 TIGRFAM TIGR00357 TIGR00357: methionine-R-sulfoxide reductase 31 156 3.5E-56 T 14-10-2018 IPR002579 Peptide methionine sulphoxide reductase MrsB GO:0033743|GO:0055114 Reactome: R-HSA-5676934 Amico_0472 90c6d0231025f48592fcc3f5d431973a 157 Gene3D G3DSA:2.170.150.20 11 157 5.0E-63 T 14-10-2018 Amico_0446 30c4a2d2f133cb1216bc50b54c25f609 295 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 5 224 8.5E-60 T 14-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Amico_0446 30c4a2d2f133cb1216bc50b54c25f609 295 Gene3D G3DSA:3.20.20.60 1 287 3.3E-97 T 14-10-2018 Amico_0446 30c4a2d2f133cb1216bc50b54c25f609 295 SUPERFAMILY SSF51621 2 234 2.41E-61 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Amico_0446 30c4a2d2f133cb1216bc50b54c25f609 295 PIRSF PIRSF015582 1 292 1.2E-83 T 14-10-2018 IPR011206 Citrate lyase beta subunit-like Amico_0902 4c3bebead5498dc20e810dd6114c79ec 441 Gene3D G3DSA:2.30.40.10 19 414 4.5E-69 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_0902 4c3bebead5498dc20e810dd6114c79ec 441 Pfam PF01979 Amidohydrolase family 57 319 1.6E-23 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Amico_0902 4c3bebead5498dc20e810dd6114c79ec 441 Gene3D G3DSA:3.20.20.140 60 353 4.5E-69 T 14-10-2018 Amico_0902 4c3bebead5498dc20e810dd6114c79ec 441 SUPERFAMILY SSF51338 14 426 7.68E-18 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_0902 4c3bebead5498dc20e810dd6114c79ec 441 SUPERFAMILY SSF51556 59 324 8.6E-54 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_0383 051b03fd7f0e5db640b04b18fe1fc814 379 Gene3D G3DSA:3.40.640.10 1 244 5.1E-85 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0383 051b03fd7f0e5db640b04b18fe1fc814 379 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 17 373 3.5E-108 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Amico_0383 051b03fd7f0e5db640b04b18fe1fc814 379 SUPERFAMILY SSF53383 14 377 1.93E-103 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0383 051b03fd7f0e5db640b04b18fe1fc814 379 PIRSF PIRSF000390 3 379 1.3E-100 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Amico_0383 051b03fd7f0e5db640b04b18fe1fc814 379 Gene3D G3DSA:3.90.1150.10 245 379 1.2E-38 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0457 5a6854e519105e267e453f4406915f85 355 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 56 318 2.4E-37 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_0457 5a6854e519105e267e453f4406915f85 355 SUPERFAMILY SSF53850 151 272 6.88E-5 T 14-10-2018 Amico_0457 5a6854e519105e267e453f4406915f85 355 Gene3D G3DSA:3.40.190.170 36 354 1.0E-75 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1357 31e581ea113e888361ada00d789fbd13 192 Pfam PF13242 HAD-hyrolase-like 110 181 7.6E-13 T 14-10-2018 Amico_1357 31e581ea113e888361ada00d789fbd13 192 TIGRFAM TIGR01656 Histidinol-ppas: histidinol-phosphate phosphatase domain 7 152 2.1E-40 T 14-10-2018 IPR006543 Histidinol-phosphate phosphatase GO:0016791 Amico_1357 31e581ea113e888361ada00d789fbd13 192 TIGRFAM TIGR01662 HAD-SF-IIIA: HAD hydrolase, family IIIA 8 157 2.2E-33 T 14-10-2018 IPR006549 HAD-superfamily hydrolase,subfamily IIIA Reactome: R-HSA-5649702 Amico_1357 31e581ea113e888361ada00d789fbd13 192 PIRSF PIRSF004682 1 188 1.0E-58 T 14-10-2018 IPR004446 D,D-heptose 1,7-bisphosphate phosphatase GO:0005975|GO:0016791 Amico_1357 31e581ea113e888361ada00d789fbd13 192 Gene3D G3DSA:3.40.50.1000 1 185 2.1E-57 T 14-10-2018 IPR023214 HAD superfamily Amico_1357 31e581ea113e888361ada00d789fbd13 192 SUPERFAMILY SSF56784 4 181 9.61E-47 T 14-10-2018 IPR036412 HAD-like superfamily Amico_1740 ba5202fffb3b4ad88cf2fd42c2ee014d 65 Pfam PF12841 YvrJ protein family 11 40 4.8E-14 T 14-10-2018 IPR024419 Protein of unknown function YvrJ Amico_0403 c90c5f54f8f6a679017b443c5a642955 289 Pfam PF09674 Protein of unknown function (DUF2400) 42 266 1.7E-69 T 14-10-2018 IPR014127 Conserved hypothetical protein CHP02757 Amico_0403 c90c5f54f8f6a679017b443c5a642955 289 TIGRFAM TIGR02757 TIGR02757: TIGR02757 family protein 39 266 1.1E-57 T 14-10-2018 IPR014127 Conserved hypothetical protein CHP02757 Amico_0262 329f474c54561f279a336f226a90381c 167 Gene3D G3DSA:1.10.1760.20 2 166 5.4E-56 T 14-10-2018 Amico_0262 329f474c54561f279a336f226a90381c 167 Pfam PF09515 Thiamine transporter protein (Thia_YuaJ) 8 158 2.8E-49 T 14-10-2018 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 Amico_0262 329f474c54561f279a336f226a90381c 167 TIGRFAM TIGR02357 ECF_ThiT_YuaJ: energy-coupled thiamine transporter ThiT 6 158 3.5E-41 T 14-10-2018 IPR012651 Thiamine transporter ThiT GO:0005886|GO:0015234|GO:0015888 Amico_0150 298a492b2f898fd65ee8d991f8b9f503 72 Pfam PF01206 Sulfurtransferase TusA 6 72 3.9E-17 T 14-10-2018 IPR001455 TusA-like domain Amico_0150 298a492b2f898fd65ee8d991f8b9f503 72 ProSitePatterns PS01148 Uncharacterized protein family UPF0033 signature. 7 31 - T 14-10-2018 IPR001455 TusA-like domain Amico_0150 298a492b2f898fd65ee8d991f8b9f503 72 SUPERFAMILY SSF64307 5 72 9.68E-16 T 14-10-2018 IPR036868 TusA-like domain superfamily Amico_0150 298a492b2f898fd65ee8d991f8b9f503 72 Gene3D G3DSA:3.30.110.40 4 72 6.0E-21 T 14-10-2018 IPR036868 TusA-like domain superfamily Amico_0572 2c66d9124606e7ed10828fd9cd13b636 349 Gene3D G3DSA:3.40.50.1100 59 155 2.4E-118 T 14-10-2018 Amico_0572 2c66d9124606e7ed10828fd9cd13b636 349 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 24 317 3.0E-77 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Amico_0572 2c66d9124606e7ed10828fd9cd13b636 349 Gene3D G3DSA:3.40.50.1100 9 323 2.4E-118 T 14-10-2018 Amico_0572 2c66d9124606e7ed10828fd9cd13b636 349 PIRSF PIRSF038945 1 349 4.5E-148 T 14-10-2018 IPR026260 Threonine synthase, bacterial/archaeal GO:0004795|GO:0009088 KEGG: 00260+4.2.3.1|KEGG: 00750+4.2.3.1 Amico_0572 2c66d9124606e7ed10828fd9cd13b636 349 SUPERFAMILY SSF53686 9 332 1.24E-100 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Amico_0572 2c66d9124606e7ed10828fd9cd13b636 349 TIGRFAM TIGR00260 thrC: threonine synthase 8 324 1.6E-92 T 14-10-2018 IPR004450 Threonine synthase-like Amico_0572 2c66d9124606e7ed10828fd9cd13b636 349 ProSitePatterns PS00165 Serine/threonine dehydratases pyridoxal-phosphate attachment site. 51 64 - T 14-10-2018 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site GO:0006520|GO:0030170 Amico_1088 c54c105b472ac021851b135404bb8c12 208 SUPERFAMILY SSF69593 5 204 5.1E-42 T 14-10-2018 Amico_1088 c54c105b472ac021851b135404bb8c12 208 SMART SM00563 37 151 2.1E-32 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Amico_1088 c54c105b472ac021851b135404bb8c12 208 Pfam PF01553 Acyltransferase 25 148 5.6E-24 T 14-10-2018 IPR002123 Phospholipid/glycerol acyltransferase GO:0016746 Amico_1775 71ece53fde352d20b6fb40f6cb439048 284 SMART SM01321 9 123 7.4E-40 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Amico_1775 71ece53fde352d20b6fb40f6cb439048 284 Pfam PF01797 Transposase IS200 like 13 121 3.3E-15 T 14-10-2018 IPR002686 Transposase IS200-like GO:0003677|GO:0004803|GO:0006313 Amico_1775 71ece53fde352d20b6fb40f6cb439048 284 SUPERFAMILY SSF143422 1 128 2.35E-26 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Amico_1775 71ece53fde352d20b6fb40f6cb439048 284 Gene3D G3DSA:3.30.70.1290 1 162 4.7E-41 T 14-10-2018 IPR036515 Transposase IS200-like superfamily GO:0003677|GO:0004803|GO:0006313 Amico_1775 71ece53fde352d20b6fb40f6cb439048 284 Pfam PF13384 Homeodomain-like domain 249 283 6.7E-6 T 14-10-2018 Amico_1681 5795d67b16fd5bfa69525249b0ad041b 252 SUPERFAMILY SSF52540 7 239 9.44E-56 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1681 5795d67b16fd5bfa69525249b0ad041b 252 Pfam PF00005 ABC transporter 21 177 8.2E-29 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1681 5795d67b16fd5bfa69525249b0ad041b 252 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1681 5795d67b16fd5bfa69525249b0ad041b 252 TIGRFAM TIGR00972 3a0107s01c2: phosphate ABC transporter, ATP-binding protein 8 252 1.5E-124 T 14-10-2018 IPR005670 Phosphate transport system permease protein 1 GO:0005315|GO:0016020|GO:0035435 Amico_1681 5795d67b16fd5bfa69525249b0ad041b 252 Gene3D G3DSA:3.40.50.300 2 248 1.1E-60 T 14-10-2018 Amico_1681 5795d67b16fd5bfa69525249b0ad041b 252 SMART SM00382 30 233 3.6E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0550 18304a327a237241f9b31ecfd76d9acd 97 Pfam PF04297 Putative helix-turn-helix protein, YlxM / p13 like 7 95 9.6E-20 T 14-10-2018 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like Amico_0550 18304a327a237241f9b31ecfd76d9acd 97 SUPERFAMILY SSF88659 8 94 4.11E-20 T 14-10-2018 IPR013324 RNA polymerase sigma factor, region 3/4-like Amico_0550 18304a327a237241f9b31ecfd76d9acd 97 Gene3D G3DSA:1.10.10.10 1 97 2.1E-25 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0218 9c215ee8a9279042558e0d153d58f5d8 97 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 51 94 2.0E-7 T 14-10-2018 Amico_0218 9c215ee8a9279042558e0d153d58f5d8 97 Gene3D G3DSA:3.40.30.10 35 94 1.8E-8 T 14-10-2018 Amico_0218 9c215ee8a9279042558e0d153d58f5d8 97 SUPERFAMILY SSF52833 29 94 6.37E-8 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Amico_0659 6c61cc9a9f6bf4c4f184031f0773de54 281 SUPERFAMILY SSF52540 1 235 1.0E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0659 6c61cc9a9f6bf4c4f184031f0773de54 281 Gene3D G3DSA:3.40.50.300 1 246 1.5E-66 T 14-10-2018 Amico_0659 6c61cc9a9f6bf4c4f184031f0773de54 281 ProSitePatterns PS00211 ABC transporters family signature. 144 158 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0659 6c61cc9a9f6bf4c4f184031f0773de54 281 Pfam PF00005 ABC transporter 23 172 3.6E-26 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0659 6c61cc9a9f6bf4c4f184031f0773de54 281 SMART SM00382 32 220 3.7E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1009 251659b91fb62b6b387e9c081d58c1b6 130 SUPERFAMILY SSF55159 42 125 4.45E-19 T 14-10-2018 IPR036877 SUI1 domain superfamily GO:0003743|GO:0006413 Amico_1009 251659b91fb62b6b387e9c081d58c1b6 130 Gene3D G3DSA:3.30.780.10 36 128 1.0E-21 T 14-10-2018 Amico_1009 251659b91fb62b6b387e9c081d58c1b6 130 PIRSF PIRSF037511 10 129 1.5E-20 T 14-10-2018 IPR005872 Archaeal/bacterial translation initiation factor SUI1 GO:0003743 Amico_1009 251659b91fb62b6b387e9c081d58c1b6 130 Pfam PF01253 Translation initiation factor SUI1 54 125 3.0E-17 T 14-10-2018 IPR001950 SUI1 domain GO:0003743|GO:0006413 Amico_1797 47ab5fc1e2bd42f93e130ab8902d1dd2 74 Pfam PF11823 Protein of unknown function (DUF3343) 2 69 1.2E-21 T 14-10-2018 IPR021778 Domain of unknown function DUF3343 Amico_1264 0fcc558143af20e1ea26391cfaea1631 412 Pfam PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit 123 379 4.9E-57 T 14-10-2018 IPR001135 NADH-quinone oxidoreductase, subunit D GO:0016651|GO:0048038|GO:0051287|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1264 0fcc558143af20e1ea26391cfaea1631 412 Pfam PF00374 Nickel-dependent hydrogenase 47 115 1.9E-17 T 14-10-2018 IPR001501 Nickel-dependent hydrogenase, large subunit GO:0016151 Amico_1264 0fcc558143af20e1ea26391cfaea1631 412 ProSitePatterns PS00507 Nickel-dependent hydrogenases large subunit signature 1. 47 72 - T 14-10-2018 IPR018194 Nickel-dependent hydrogenase, large subunit, nickel binding site GO:0008901|GO:0016151|GO:0055114 Amico_1264 0fcc558143af20e1ea26391cfaea1631 412 Gene3D G3DSA:1.10.645.20 10 379 1.1E-116 T 14-10-2018 IPR038290 NADH-quinone oxidoreductase, subunit D superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1264 0fcc558143af20e1ea26391cfaea1631 412 SUPERFAMILY SSF56762 21 379 1.83E-103 T 14-10-2018 IPR029014 [NiFe]-hydrogenase, large subunit Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1068 7462d041ba2e62f1c3bb1d2f25fd40c2 192 Gene3D G3DSA:3.10.129.10 70 186 3.3E-27 T 14-10-2018 Amico_1068 7462d041ba2e62f1c3bb1d2f25fd40c2 192 Gene3D G3DSA:1.10.10.10 3 63 4.1E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1068 7462d041ba2e62f1c3bb1d2f25fd40c2 192 SUPERFAMILY SSF54637 76 181 1.67E-12 T 14-10-2018 IPR029069 HotDog domain superfamily Amico_0146 6e3ae25baa0d6fa4bdd894dff5b12591 329 SUPERFAMILY SSF51569 2 256 6.59E-50 T 14-10-2018 Amico_0146 6e3ae25baa0d6fa4bdd894dff5b12591 329 Gene3D G3DSA:3.20.20.70 1 261 1.0E-66 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0146 6e3ae25baa0d6fa4bdd894dff5b12591 329 Pfam PF00682 HMGL-like 2 253 1.3E-35 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Amico_1800 45d9bccbf4d865a36fc4ba36f5125aa4 463 ProSitePatterns PS00758 ArgE / dapE / ACY1 / CPG2 / yscS family signature 1. 77 86 - T 14-10-2018 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site GO:0006508|GO:0008237 Amico_1800 45d9bccbf4d865a36fc4ba36f5125aa4 463 Gene3D G3DSA:3.30.70.360 198 289 1.9E-158 T 14-10-2018 Amico_1800 45d9bccbf4d865a36fc4ba36f5125aa4 463 Gene3D G3DSA:3.40.630.10 12 461 1.9E-158 T 14-10-2018 Amico_1800 45d9bccbf4d865a36fc4ba36f5125aa4 463 Pfam PF01546 Peptidase family M20/M25/M40 79 458 1.9E-35 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1800 45d9bccbf4d865a36fc4ba36f5125aa4 463 SUPERFAMILY SSF53187 4 462 3.55E-64 T 14-10-2018 Amico_1800 45d9bccbf4d865a36fc4ba36f5125aa4 463 SUPERFAMILY SSF55031 181 373 7.09E-33 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1800 45d9bccbf4d865a36fc4ba36f5125aa4 463 Gene3D G3DSA:3.30.70.360 181 377 1.9E-158 T 14-10-2018 Amico_1800 45d9bccbf4d865a36fc4ba36f5125aa4 463 TIGRFAM TIGR01887 dipeptidaselike: putative dipeptidase 11 458 2.2E-144 T 14-10-2018 IPR010964 Peptidase M20A, peptidase V-related GO:0008270|GO:0016805 Amico_1844 bf70ae7c41818c0e944a9acbb8fed61e 275 Gene3D G3DSA:3.30.470.10 1 111 7.9E-23 T 14-10-2018 Amico_1844 bf70ae7c41818c0e944a9acbb8fed61e 275 Pfam PF01063 Amino-transferase class IV 30 245 1.1E-38 T 14-10-2018 IPR001544 Aminotransferase class IV GO:0003824 Reactome: R-HSA-70895 Amico_1844 bf70ae7c41818c0e944a9acbb8fed61e 275 SUPERFAMILY SSF56752 3 269 5.1E-57 T 14-10-2018 IPR036038 Aminotransferase-like, PLP-dependent enzymes GO:0003824 Reactome: R-HSA-70895 Amico_1844 bf70ae7c41818c0e944a9acbb8fed61e 275 Gene3D G3DSA:3.20.10.10 117 272 1.5E-38 T 14-10-2018 Amico_1526 af08064bfbd4f118b318c157fcd8017d 195 Pfam PF01351 Ribonuclease HII 7 188 3.8E-40 T 14-10-2018 IPR024567 Ribonuclease HII/HIII domain Amico_1526 af08064bfbd4f118b318c157fcd8017d 195 SUPERFAMILY SSF53098 2 188 1.17E-62 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Amico_1526 af08064bfbd4f118b318c157fcd8017d 195 Hamap MF_00052_B Ribonuclease HII [rnhB]. 5 190 34.194 T 14-10-2018 IPR022898 Ribonuclease HII GO:0004523 Amico_1526 af08064bfbd4f118b318c157fcd8017d 195 Gene3D G3DSA:3.30.420.10 1 194 1.7E-67 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Amico_0790 b80ccd6275282bcc786a58f1f29e1730 127 Pfam PF01648 4'-phosphopantetheinyl transferase superfamily 4 115 1.3E-12 T 14-10-2018 IPR008278 4'-phosphopantetheinyl transferase domain GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Amico_0790 b80ccd6275282bcc786a58f1f29e1730 127 Gene3D G3DSA:3.90.470.20 1 120 1.5E-29 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Amico_0790 b80ccd6275282bcc786a58f1f29e1730 127 Hamap MF_00101 Holo-[acyl-carrier-protein] synthase [acpS]. 3 120 18.528 T 14-10-2018 IPR002582 Holo-[acyl carrier protein] synthase GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 Amico_0790 b80ccd6275282bcc786a58f1f29e1730 127 TIGRFAM TIGR00556 pantethn_trn: phosphopantetheine--protein transferase domain 2 119 1.6E-21 T 14-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 Amico_0790 b80ccd6275282bcc786a58f1f29e1730 127 SUPERFAMILY SSF56214 1 119 5.76E-22 T 14-10-2018 IPR037143 4'-phosphopantetheinyl transferase domain superfamily GO:0000287|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289|Reactome: R-HSA-199220 Amico_0790 b80ccd6275282bcc786a58f1f29e1730 127 ProDom PD004282 TRANSFERASE SYNTHASE HOLO-ACYL-CARRIER-PROTEIN HOLO-ACP 4'-PHOSPHOPANTETHEINYL FATTY ACID METAL-BINDING MAGNESIUM LIPID 8 119 1.0E-4 T 14-10-2018 IPR004568 Phosphopantetheine-protein transferase domain GO:0000287|GO:0006633|GO:0008897 KEGG: 00770+2.7.8.7|MetaCyc: PWY-6012|MetaCyc: PWY-6012-1|MetaCyc: PWY-6289 Amico_0907 ccf57e78b2df1988c475a6e40dfe41c4 308 Pfam PF14020 Protein of unknown function (DUF4236) 3 56 4.2E-22 T 14-10-2018 IPR025330 Domain of unknown function DUF4236 Amico_0907 ccf57e78b2df1988c475a6e40dfe41c4 308 SUPERFAMILY SSF48452 101 241 6.51E-10 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Amico_0907 ccf57e78b2df1988c475a6e40dfe41c4 308 Gene3D G3DSA:1.25.40.10 109 306 3.5E-11 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Amico_0238 5dac3830a51533cc93f128433a60b4f5 418 PIRSF PIRSF000151 1 418 7.1E-180 T 14-10-2018 IPR012134 Glutamate-5-semialdehyde dehydrogenase GO:0004350|GO:0006561|GO:0050661|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922 Amico_0238 5dac3830a51533cc93f128433a60b4f5 418 ProSitePatterns PS01223 Gamma-glutamyl phosphate reductase signature. 324 345 - T 14-10-2018 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Amico_0238 5dac3830a51533cc93f128433a60b4f5 418 Pfam PF00171 Aldehyde dehydrogenase family 5 283 1.0E-16 T 14-10-2018 IPR015590 Aldehyde dehydrogenase domain GO:0016491|GO:0055114 Amico_0238 5dac3830a51533cc93f128433a60b4f5 418 Hamap MF_00412 Gamma-glutamyl phosphate reductase [proA]. 6 417 42.605 T 14-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Amico_0238 5dac3830a51533cc93f128433a60b4f5 418 Gene3D G3DSA:3.40.605.10 19 412 1.3E-165 T 14-10-2018 IPR016162 Aldehyde dehydrogenase, N-terminal GO:0016491|GO:0055114 Amico_0238 5dac3830a51533cc93f128433a60b4f5 418 SUPERFAMILY SSF53720 5 417 4.19E-120 T 14-10-2018 IPR016161 Aldehyde/histidinol dehydrogenase GO:0016491|GO:0055114 Amico_0238 5dac3830a51533cc93f128433a60b4f5 418 TIGRFAM TIGR00407 proA: glutamate-5-semialdehyde dehydrogenase 14 407 3.4E-159 T 14-10-2018 IPR000965 GPR domain GO:0004350|GO:0006561|GO:0055114 KEGG: 00330+1.2.1.41|KEGG: 00332+1.2.1.41|MetaCyc: PWY-3341|MetaCyc: PWY-6922|Reactome: R-HSA-70614 Amico_0238 5dac3830a51533cc93f128433a60b4f5 418 Gene3D G3DSA:3.40.309.10 227 375 1.3E-165 T 14-10-2018 IPR016163 Aldehyde dehydrogenase, C-terminal GO:0016491|GO:0016620|GO:0055114 Amico_1888 9c374ee8fb4d7859cc8c6fb081bd3ba8 340 Gene3D G3DSA:3.40.190.10 43 303 1.6E-89 T 14-10-2018 Amico_1888 9c374ee8fb4d7859cc8c6fb081bd3ba8 340 Pfam PF13343 Bacterial extracellular solute-binding protein 86 300 3.9E-33 T 14-10-2018 Amico_1888 9c374ee8fb4d7859cc8c6fb081bd3ba8 340 Gene3D G3DSA:3.40.190.10 132 315 1.6E-89 T 14-10-2018 Amico_1888 9c374ee8fb4d7859cc8c6fb081bd3ba8 340 SUPERFAMILY SSF53850 43 332 1.32E-72 T 14-10-2018 Amico_1888 9c374ee8fb4d7859cc8c6fb081bd3ba8 340 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 149 163 4.7E-8 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Amico_1888 9c374ee8fb4d7859cc8c6fb081bd3ba8 340 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 245 264 4.7E-8 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Amico_1888 9c374ee8fb4d7859cc8c6fb081bd3ba8 340 PRINTS PR00909 Bacterial periplasmic spermidine/putrescine-binding protein signature 52 73 4.7E-8 T 14-10-2018 IPR001188 Bacterial periplasmic spermidine/putrescine-binding protein GO:0015846|GO:0019808|GO:0042597 Amico_1888 9c374ee8fb4d7859cc8c6fb081bd3ba8 340 PIRSF PIRSF002825 1 335 5.3E-78 T 14-10-2018 IPR026045 Ferric binding protein Amico_0905 ec5382efde61b3fbbdfe1382dbaa97e2 183 SUPERFAMILY SSF140478 25 172 1.44E-56 T 14-10-2018 IPR023353 LemA-like domain superfamily Amico_0905 ec5382efde61b3fbbdfe1382dbaa97e2 183 Gene3D G3DSA:1.20.1440.20 15 183 2.4E-66 T 14-10-2018 IPR023353 LemA-like domain superfamily Amico_0905 ec5382efde61b3fbbdfe1382dbaa97e2 183 Pfam PF04011 LemA family 7 183 6.0E-71 T 14-10-2018 IPR007156 LemA Amico_0280 542e5a2574dccd0579586f63a9aa5ea8 319 SUPERFAMILY SSF53067 6 126 2.29E-28 T 14-10-2018 Amico_0280 542e5a2574dccd0579586f63a9aa5ea8 319 Gene3D G3DSA:3.30.420.40 1 127 4.2E-33 T 14-10-2018 Amico_0280 542e5a2574dccd0579586f63a9aa5ea8 319 Pfam PF02541 Ppx/GppA phosphatase family 21 303 1.2E-53 T 14-10-2018 IPR003695 Ppx/GppA phosphatase KEGG: 00230+3.6.1.40 Amico_0280 542e5a2574dccd0579586f63a9aa5ea8 319 SUPERFAMILY SSF53067 134 308 3.17E-40 T 14-10-2018 Amico_0280 542e5a2574dccd0579586f63a9aa5ea8 319 Gene3D G3DSA:3.30.420.150 132 310 5.6E-49 T 14-10-2018 Amico_1102 76f7ff897575e2967dc1cc243e206352 561 Pfam PF12571 Phage tail-collar fibre protein 1 149 1.9E-64 T 14-10-2018 IPR022225 Phage tail fibre protein Amico_0042 a43897e2b7d4ce6b00b3cd38c2b4dab9 280 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 270 1.4E-6 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0042 a43897e2b7d4ce6b00b3cd38c2b4dab9 280 SUPERFAMILY SSF161098 17 269 8.32E-25 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0042 a43897e2b7d4ce6b00b3cd38c2b4dab9 280 Gene3D G3DSA:1.10.3720.10 59 274 5.8E-20 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1220 df3b1771b1374cb8e7f553bd9d6b3de6 212 Pfam PF00440 Bacterial regulatory proteins, tetR family 22 63 1.7E-14 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Amico_1220 df3b1771b1374cb8e7f553bd9d6b3de6 212 Gene3D G3DSA:1.10.357.10 62 206 6.6E-20 T 14-10-2018 Amico_1220 df3b1771b1374cb8e7f553bd9d6b3de6 212 SUPERFAMILY SSF46689 10 83 8.25E-17 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Amico_1220 df3b1771b1374cb8e7f553bd9d6b3de6 212 SUPERFAMILY SSF48498 91 205 1.97E-11 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Amico_1220 df3b1771b1374cb8e7f553bd9d6b3de6 212 Gene3D G3DSA:1.10.10.60 8 61 1.4E-15 T 14-10-2018 Amico_1220 df3b1771b1374cb8e7f553bd9d6b3de6 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 20 33 9.8E-9 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Amico_1220 df3b1771b1374cb8e7f553bd9d6b3de6 212 PRINTS PR00455 TetR bacterial regulatory protein HTH signature 41 64 9.8E-9 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Amico_1528 a27d4e1d5e2e2c950011681d58bb105f 179 Pfam PF00717 Peptidase S24-like 34 104 3.7E-18 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Amico_1528 a27d4e1d5e2e2c950011681d58bb105f 179 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 28 44 5.7E-23 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Amico_1528 a27d4e1d5e2e2c950011681d58bb105f 179 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 80 92 5.7E-23 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Amico_1528 a27d4e1d5e2e2c950011681d58bb105f 179 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 132 151 5.7E-23 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Amico_1528 a27d4e1d5e2e2c950011681d58bb105f 179 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 12 172 9.9E-52 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Amico_1528 a27d4e1d5e2e2c950011681d58bb105f 179 SUPERFAMILY SSF51306 26 178 2.04E-57 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Amico_1528 a27d4e1d5e2e2c950011681d58bb105f 179 ProSitePatterns PS00501 Signal peptidases I serine active site. 37 44 - T 14-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 Amico_1528 a27d4e1d5e2e2c950011681d58bb105f 179 ProSitePatterns PS00760 Signal peptidases I lysine active site. 82 94 - T 14-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 Amico_1403 5bfe459de1d7743619538e2c5ffaaefd 329 TIGRFAM TIGR02124 hypE: hydrogenase expression/formation protein HypE 3 329 5.1E-107 T 14-10-2018 IPR011854 Carbamoyl dehydratase HypE Amico_1403 5bfe459de1d7743619538e2c5ffaaefd 329 Pfam PF00586 AIR synthase related protein, N-terminal domain 36 144 1.3E-11 T 14-10-2018 IPR016188 PurM-like, N-terminal domain Amico_1403 5bfe459de1d7743619538e2c5ffaaefd 329 Gene3D G3DSA:3.90.650.10 152 329 1.8E-44 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Amico_1403 5bfe459de1d7743619538e2c5ffaaefd 329 Gene3D G3DSA:3.30.1330.10 1 146 2.6E-35 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Amico_1403 5bfe459de1d7743619538e2c5ffaaefd 329 SUPERFAMILY SSF55326 3 144 1.45E-20 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Amico_1403 5bfe459de1d7743619538e2c5ffaaefd 329 PIRSF PIRSF005644 1 329 4.3E-97 T 14-10-2018 IPR011854 Carbamoyl dehydratase HypE Amico_1403 5bfe459de1d7743619538e2c5ffaaefd 329 SUPERFAMILY SSF56042 153 324 2.54E-36 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Amico_1403 5bfe459de1d7743619538e2c5ffaaefd 329 Pfam PF02769 AIR synthase related protein, C-terminal domain 157 301 5.5E-24 T 14-10-2018 IPR010918 PurM-like, C-terminal domain Amico_1353 d917829f08e0d2316f774dd14125a963 413 SUPERFAMILY SSF53223 7 158 6.62E-38 T 14-10-2018 Amico_1353 d917829f08e0d2316f774dd14125a963 413 SMART SM00919 160 383 7.2E-54 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Amico_1353 d917829f08e0d2316f774dd14125a963 413 SMART SM01274 16 149 6.9E-43 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Amico_1353 d917829f08e0d2316f774dd14125a963 413 Gene3D G3DSA:3.40.50.720 158 390 1.3E-61 T 14-10-2018 Amico_1353 d917829f08e0d2316f774dd14125a963 413 SUPERFAMILY SSF51735 160 404 6.81E-57 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1353 d917829f08e0d2316f774dd14125a963 413 Pfam PF00390 Malic enzyme, N-terminal domain 30 146 1.9E-14 T 14-10-2018 IPR012301 Malic enzyme, N-terminal domain GO:0004471|GO:0055114 Amico_1353 d917829f08e0d2316f774dd14125a963 413 Pfam PF03949 Malic enzyme, NAD binding domain 161 382 3.9E-17 T 14-10-2018 IPR012302 Malic enzyme, NAD-binding GO:0051287 Amico_1353 d917829f08e0d2316f774dd14125a963 413 Gene3D G3DSA:3.40.50.10380 2 157 1.3E-52 T 14-10-2018 IPR037062 Malic enzyme, N-terminal domain superfamily GO:0004471|GO:0055114 Amico_1353 d917829f08e0d2316f774dd14125a963 413 PIRSF PIRSF000106 26 406 1.0E-59 T 14-10-2018 IPR001891 Malic oxidoreductase GO:0004470|GO:0004471 Amico_0526 036994334ecefc03697fe5066027dc90 392 PIRSF PIRSF001413 1 391 6.0E-161 T 14-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Amico_0526 036994334ecefc03697fe5066027dc90 392 Gene3D G3DSA:3.40.50.1100 55 384 5.1E-174 T 14-10-2018 Amico_0526 036994334ecefc03697fe5066027dc90 392 Gene3D G3DSA:3.40.50.1100 11 206 5.1E-174 T 14-10-2018 Amico_0526 036994334ecefc03697fe5066027dc90 392 ProSitePatterns PS00168 Tryptophan synthase beta chain pyridoxal-phosphate attachment site. 82 96 - T 14-10-2018 IPR006653 Tryptophan synthase, beta chain, conserved site GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Amico_0526 036994334ecefc03697fe5066027dc90 392 Pfam PF00291 Pyridoxal-phosphate dependent enzyme 53 378 7.5E-47 T 14-10-2018 IPR001926 Pyridoxal-phosphate dependent enzyme Amico_0526 036994334ecefc03697fe5066027dc90 392 SUPERFAMILY SSF53686 6 388 1.57E-135 T 14-10-2018 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme Amico_0526 036994334ecefc03697fe5066027dc90 392 TIGRFAM TIGR00263 trpB: tryptophan synthase, beta subunit 8 388 4.7E-178 T 14-10-2018 IPR006654 Tryptophan synthase, beta chain GO:0004834|GO:0006568 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Amico_0526 036994334ecefc03697fe5066027dc90 392 Hamap MF_00133 Tryptophan synthase beta chain [trpB]. 3 391 48.613 T 14-10-2018 IPR023026 Tryptophan synthase beta chain/beta chain-like GO:0000162|GO:0004834 KEGG: 00260+4.2.1.20|KEGG: 00400+4.2.1.20 Amico_0464 01477932f65bcd350d4c573b329c264d 228 SUPERFAMILY SSF52540 16 227 7.14E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0464 01477932f65bcd350d4c573b329c264d 228 SMART SM00382 36 228 4.5E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0464 01477932f65bcd350d4c573b329c264d 228 Gene3D G3DSA:3.40.50.300 6 228 9.8E-49 T 14-10-2018 Amico_0464 01477932f65bcd350d4c573b329c264d 228 ProSitePatterns PS00211 ABC transporters family signature. 154 168 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0464 01477932f65bcd350d4c573b329c264d 228 Pfam PF00005 ABC transporter 28 182 2.9E-25 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0418 e5442a3ba3a920ed3c2843e5caf678f3 295 SMART SM00849 16 205 1.4E-20 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0418 e5442a3ba3a920ed3c2843e5caf678f3 295 Gene3D G3DSA:3.60.15.10 3 231 1.6E-30 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_0418 e5442a3ba3a920ed3c2843e5caf678f3 295 SUPERFAMILY SSF56281 14 280 2.71E-36 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_0418 e5442a3ba3a920ed3c2843e5caf678f3 295 Pfam PF00753 Metallo-beta-lactamase superfamily 15 205 6.7E-16 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 Gene3D G3DSA:2.40.50.140 68 130 1.0E-21 T 14-10-2018 Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 SMART SM01185 70 124 4.9E-22 T 14-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 SUPERFAMILY SSF50249 69 132 6.43E-17 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 PIRSF PIRSF005901 3 189 1.5E-67 T 14-10-2018 IPR020599 Translation elongation factor P/YeiP Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 TIGRFAM TIGR00038 efp: translation elongation factor P 5 188 2.9E-71 T 14-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 Gene3D G3DSA:2.30.30.30 4 66 1.4E-25 T 14-10-2018 IPR014722 Ribosomal protein L2, domain 2 Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 Pfam PF09285 Elongation factor P, C-terminal 132 187 2.5E-25 T 14-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 Gene3D G3DSA:2.40.50.140 131 188 5.7E-26 T 14-10-2018 Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 SMART SM00841 132 187 3.5E-30 T 14-10-2018 IPR015365 Elongation factor P, C-terminal GO:0005737|GO:0043043 Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 Hamap MF_00141 Elongation factor P [efp]. 4 188 45.023 T 14-10-2018 IPR011768 Translation elongation factor P GO:0003746|GO:0005737|GO:0006414 Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 SUPERFAMILY SSF50249 132 188 1.15E-17 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 SUPERFAMILY SSF50104 5 66 3.43E-16 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 Pfam PF08207 Elongation factor P (EF-P) KOW-like domain 7 63 8.1E-20 T 14-10-2018 IPR013185 Translation elongation factor, KOW-like Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 Pfam PF01132 Elongation factor P (EF-P) OB domain 72 123 1.4E-19 T 14-10-2018 IPR001059 Translation elongation factor P/YeiP, central GO:0003746|GO:0006414 Amico_1038 7a16e0ea24961b0ce49be7fc39543116 190 ProSitePatterns PS01275 Elongation factor P signature. 153 172 - T 14-10-2018 IPR013852 Translation elongation factor P/YeiP, conserved site Amico_1240 be5074ca659f4b429d107765d1bf4e62 220 Pfam PF13309 HTH domain 152 214 1.1E-19 T 14-10-2018 IPR039445 Transcriptional regulator DauR-like, HTH domain Amico_1240 be5074ca659f4b429d107765d1bf4e62 220 Pfam PF08348 YheO-like PAS domain 11 122 2.2E-34 T 14-10-2018 IPR013559 YheO-like Amico_1240 be5074ca659f4b429d107765d1bf4e62 220 ProDom PD037769 DNA-BINDING YHEO UNCHARACTERIZED BACTERIA SIMILAR HI0575 CONTAINING TRANSCRIPTION REGULATOR HELIX-TURN-HELIX 1 113 2.0E-17 T 14-10-2018 IPR013559 YheO-like Amico_0882 2ff27a2ba1a081510d141b760dd03a11 365 TIGRFAM TIGR01091 upp: uracil phosphoribosyltransferase 160 365 5.7E-89 T 14-10-2018 IPR005765 Uracil phosphoribosyl transferase GO:0004845|GO:0006223 KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Amico_0882 2ff27a2ba1a081510d141b760dd03a11 365 Gene3D G3DSA:3.40.1400.10 1 148 5.8E-62 T 14-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Amico_0882 2ff27a2ba1a081510d141b760dd03a11 365 Pfam PF14681 Uracil phosphoribosyltransferase 163 364 1.9E-75 T 14-10-2018 Amico_0882 2ff27a2ba1a081510d141b760dd03a11 365 SUPERFAMILY SSF89623 1 147 4.19E-55 T 14-10-2018 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Amico_0882 2ff27a2ba1a081510d141b760dd03a11 365 SUPERFAMILY SSF53271 160 363 4.33E-73 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Amico_0882 2ff27a2ba1a081510d141b760dd03a11 365 TIGRFAM TIGR00689 rpiB_lacA_lacB: sugar-phosphate isomerase, RpiB/LacA/LacB family 3 146 2.5E-53 T 14-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Amico_0882 2ff27a2ba1a081510d141b760dd03a11 365 Gene3D G3DSA:3.40.50.2020 153 365 2.0E-84 T 14-10-2018 Amico_0882 2ff27a2ba1a081510d141b760dd03a11 365 Hamap MF_01218_B Uracil phosphoribosyltransferase [upp]. 159 365 47.49 T 14-10-2018 IPR034332 Uracil phosphoribosyltransferase, bacterial-type KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Amico_0882 2ff27a2ba1a081510d141b760dd03a11 365 Pfam PF02502 Ribose/Galactose Isomerase 3 141 2.5E-54 T 14-10-2018 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family GO:0005975|GO:0016853 KEGG: 00052+5.3.1.26 Amico_0882 2ff27a2ba1a081510d141b760dd03a11 365 TIGRFAM TIGR01120 rpiB: ribose 5-phosphate isomerase B 2 143 7.7E-47 T 14-10-2018 IPR004785 Ribose 5-phosphate isomerase B GO:0004751|GO:0006098 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 Pfam PF01336 OB-fold nucleic acid binding domain 72 148 1.3E-13 T 14-10-2018 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type GO:0003676 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 PIRSF PIRSF039101 2 506 5.6E-195 T 14-10-2018 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 TIGRFAM TIGR00499 lysS_bact: lysine--tRNA ligase 18 505 3.6E-196 T 14-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 SUPERFAMILY SSF50249 16 158 1.52E-35 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 Gene3D G3DSA:3.30.930.10 161 506 4.6E-128 T 14-10-2018 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 SUPERFAMILY SSF55681 165 503 1.13E-112 T 14-10-2018 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 Pfam PF00152 tRNA synthetases class II (D, K and N) 166 502 9.3E-77 T 14-10-2018 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) GO:0000166|GO:0004812|GO:0005524|GO:0006418 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 Gene3D G3DSA:2.40.50.140 8 160 3.4E-40 T 14-10-2018 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 Hamap MF_00252 Lysine--tRNA ligase [lysS]. 22 505 42.984 T 14-10-2018 IPR002313 Lysine-tRNA ligase, class II GO:0004824|GO:0005524|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 202 212 2.5E-34 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 247 260 2.5E-34 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 387 403 2.5E-34 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 265 282 2.5E-34 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Amico_1376 588198960ff68ea944dd9f1dd61845fb 506 PRINTS PR00982 Lysyl-tRNA synthetase signature 218 234 2.5E-34 T 14-10-2018 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal GO:0000166|GO:0004824|GO:0005524|GO:0005737|GO:0006430 KEGG: 00970+6.1.1.6|Reactome: R-HSA-2408517|Reactome: R-HSA-379716|Reactome: R-HSA-379726 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 SUPERFAMILY SSF55424 327 446 2.75E-31 T 14-10-2018 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily GO:0016491|GO:0050660|GO:0055114 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 Pfam PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain 334 435 1.1E-17 T 14-10-2018 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO:0045454|GO:0055114 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 Pfam PF07992 Pyridine nucleotide-disulphide oxidoreductase 5 292 4.3E-56 T 14-10-2018 IPR023753 FAD/NAD(P)-binding domain GO:0016491|GO:0055114 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 SUPERFAMILY SSF51905 1 350 3.01E-43 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 Gene3D G3DSA:3.50.50.60 117 444 4.3E-166 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 Gene3D G3DSA:3.50.50.60 5 344 4.3E-166 T 14-10-2018 IPR036188 FAD/NAD(P)-binding domain superfamily Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 391 406 1.3E-15 T 14-10-2018 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 5 27 1.3E-15 T 14-10-2018 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 281 288 1.3E-15 T 14-10-2018 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 240 254 1.3E-15 T 14-10-2018 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 PRINTS PR00411 Pyridine nucleotide disulphide reductase class-I signature 155 180 1.3E-15 T 14-10-2018 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 155 173 7.6E-24 T 14-10-2018 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 108 126 7.6E-24 T 14-10-2018 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 6 25 7.6E-24 T 14-10-2018 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 239 255 7.6E-24 T 14-10-2018 Amico_1799 8a4fe82f505d21f3b93ec0ccdc437bca 448 PRINTS PR00368 FAD-dependent pyridine nucleotide reductase signature 266 288 7.6E-24 T 14-10-2018 Amico_1679 8c444c673214686455a7264acde82052 289 TIGRFAM TIGR02138 phosphate_pstC: phosphate ABC transporter, permease protein PstC 10 284 3.6E-78 T 14-10-2018 IPR011864 Phosphate ABC transporter, permease protein PstC GO:0005315|GO:0006817|GO:0016021 Amico_1679 8c444c673214686455a7264acde82052 289 Gene3D G3DSA:1.10.3720.10 60 286 1.5E-34 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1679 8c444c673214686455a7264acde82052 289 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 85 284 4.6E-20 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_1679 8c444c673214686455a7264acde82052 289 SUPERFAMILY SSF161098 18 280 2.8E-34 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1158 a1dac0d9c86152e2e6cbb15620922f47 195 SUPERFAMILY SSF64307 2 61 8.11E-12 T 14-10-2018 IPR036868 TusA-like domain superfamily Amico_1158 a1dac0d9c86152e2e6cbb15620922f47 195 Gene3D G3DSA:3.40.1260.10 110 195 1.8E-7 T 14-10-2018 IPR027396 DsrEFH-like Amico_1158 a1dac0d9c86152e2e6cbb15620922f47 195 SUPERFAMILY SSF75169 94 195 2.52E-11 T 14-10-2018 IPR027396 DsrEFH-like Amico_1158 a1dac0d9c86152e2e6cbb15620922f47 195 Gene3D G3DSA:3.30.110.40 3 74 1.4E-16 T 14-10-2018 IPR036868 TusA-like domain superfamily Amico_1158 a1dac0d9c86152e2e6cbb15620922f47 195 Pfam PF01206 Sulfurtransferase TusA 3 65 2.9E-13 T 14-10-2018 IPR001455 TusA-like domain Amico_1158 a1dac0d9c86152e2e6cbb15620922f47 195 TIGRFAM TIGR03527 selenium_YedF: selenium metabolism protein YedF 5 194 1.3E-54 T 14-10-2018 IPR019870 Selenium metabolism protein YedF Amico_1158 a1dac0d9c86152e2e6cbb15620922f47 195 Pfam PF02635 DsrE/DsrF-like family 124 195 2.6E-7 T 14-10-2018 IPR003787 Sulphur relay, DsrE/F-like protein Amico_1892 b6fb1dc0982f0d6f0458d193bb7d065f 253 Gene3D G3DSA:3.20.20.60 1 253 7.0E-80 T 14-10-2018 Amico_1892 b6fb1dc0982f0d6f0458d193bb7d065f 253 SUPERFAMILY SSF51621 2 251 5.93E-69 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Amico_1892 b6fb1dc0982f0d6f0458d193bb7d065f 253 Pfam PF03328 HpcH/HpaI aldolase/citrate lyase family 17 239 2.6E-29 T 14-10-2018 IPR005000 HpcH/HpaI aldolase/citrate lyase domain GO:0003824 Amico_0047 60046a4ced0e8f267ff21a386658ba56 259 Gene3D G3DSA:3.40.50.300 5 251 3.6E-76 T 14-10-2018 Amico_0047 60046a4ced0e8f267ff21a386658ba56 259 SUPERFAMILY SSF52540 9 243 1.86E-77 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0047 60046a4ced0e8f267ff21a386658ba56 259 PIRSF PIRSF039085 6 249 2.6E-107 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Amico_0047 60046a4ced0e8f267ff21a386658ba56 259 SMART SM00382 34 238 9.1E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0047 60046a4ced0e8f267ff21a386658ba56 259 ProSitePatterns PS00211 ABC transporters family signature. 145 159 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0047 60046a4ced0e8f267ff21a386658ba56 259 Pfam PF00005 ABC transporter 25 173 1.4E-34 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0299 95dd5eda41056e17e696cd9877794b4d 131 Gene3D G3DSA:3.30.230.10 3 131 3.8E-49 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Amico_0299 95dd5eda41056e17e696cd9877794b4d 131 Pfam PF00380 Ribosomal protein S9/S16 11 131 3.3E-45 T 14-10-2018 IPR000754 Ribosomal protein S9 GO:0003735|GO:0005840|GO:0006412 Amico_0299 95dd5eda41056e17e696cd9877794b4d 131 ProSitePatterns PS00360 Ribosomal protein S9 signature. 70 88 - T 14-10-2018 IPR020574 Ribosomal protein S9, conserved site GO:0003735|GO:0005840|GO:0006412 Amico_0299 95dd5eda41056e17e696cd9877794b4d 131 SUPERFAMILY SSF54211 6 131 5.69E-46 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0299 95dd5eda41056e17e696cd9877794b4d 131 Hamap MF_00532_B 30S ribosomal protein S9 [rpsI]. 2 131 31.533 T 14-10-2018 IPR023035 Ribosomal protein S9, bacterial/plastid Amico_0632 13e9900a4b65a71ce4b6bcf4abc46e5a 110 TIGRFAM TIGR01044 rplV_bact: ribosomal protein uL22 5 107 2.3E-41 T 14-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0632 13e9900a4b65a71ce4b6bcf4abc46e5a 110 Pfam PF00237 Ribosomal protein L22p/L17e 7 107 2.7E-36 T 14-10-2018 IPR001063 Ribosomal protein L22/L17 GO:0003735|GO:0005840|GO:0006412 Amico_0632 13e9900a4b65a71ce4b6bcf4abc46e5a 110 Gene3D G3DSA:3.90.470.10 1 110 3.4E-45 T 14-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 Amico_0632 13e9900a4b65a71ce4b6bcf4abc46e5a 110 SUPERFAMILY SSF54843 1 110 1.44E-41 T 14-10-2018 IPR036394 Ribosomal protein L22/L17 superfamily GO:0003735|GO:0005840|GO:0006412 Amico_0632 13e9900a4b65a71ce4b6bcf4abc46e5a 110 Hamap MF_01331_B 50S ribosomal protein L22 [rplV]. 1 110 28.017 T 14-10-2018 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0064 91ef3fb4d9a4143e825655937d3efd20 240 Pfam PF02361 Cobalt transport protein 19 208 7.6E-28 T 14-10-2018 IPR003339 ABC/ECF transporter, transmembrane component Amico_0064 91ef3fb4d9a4143e825655937d3efd20 240 TIGRFAM TIGR02454 ECF_T_CbiQ: cobalt ECF transporter T component CbiQ 25 204 2.7E-34 T 14-10-2018 IPR012809 Cobalt ECF transporter T component CbiQ GO:0005887|GO:0006824|GO:0043190 Amico_0088 990c5526f02b0bd9471b00c871900798 334 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 37 293 4.4E-85 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_0088 990c5526f02b0bd9471b00c871900798 334 Gene3D G3DSA:3.40.190.170 30 332 9.3E-113 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_0088 990c5526f02b0bd9471b00c871900798 334 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 37 316 3.9E-101 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_0088 990c5526f02b0bd9471b00c871900798 334 PIRSF PIRSF006470 2 334 1.0E-109 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_0652 5bcbece82871d9a5781af934e2ea3c50 41 Hamap MF_00251 50S ribosomal protein L36 [rpmJ]. 1 38 18.086 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0652 5bcbece82871d9a5781af934e2ea3c50 41 Pfam PF00444 Ribosomal protein L36 1 38 9.2E-21 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0652 5bcbece82871d9a5781af934e2ea3c50 41 TIGRFAM TIGR01022 rpmJ_bact: ribosomal protein bL36 1 38 4.1E-20 T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0652 5bcbece82871d9a5781af934e2ea3c50 41 SUPERFAMILY SSF57840 1 38 8.63E-17 T 14-10-2018 IPR035977 Ribosomal protein L36 superfamily GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0652 5bcbece82871d9a5781af934e2ea3c50 41 ProSitePatterns PS00828 Ribosomal protein L36 signature. 11 37 - T 14-10-2018 IPR000473 Ribosomal protein L36 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 TIGRFAM TIGR01174 ftsA: cell division protein FtsA 7 375 3.6E-91 T 14-10-2018 IPR020823 Cell division protein FtsA Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 Gene3D G3DSA:3.90.640.10 237 297 9.9E-90 T 14-10-2018 Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 SUPERFAMILY SSF53067 200 367 1.79E-24 T 14-10-2018 Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 Gene3D G3DSA:3.30.420.40 11 353 9.9E-90 T 14-10-2018 Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 SMART SM00842 8 198 2.2E-71 T 14-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 Pfam PF14450 Cell division protein FtsA 9 197 3.6E-11 T 14-10-2018 Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 Hamap MF_02033 Cell division protein FtsA [ftsA]. 4 438 25.322 T 14-10-2018 IPR020823 Cell division protein FtsA Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 PIRSF PIRSF003101 1 438 3.7E-99 T 14-10-2018 IPR020823 Cell division protein FtsA Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 Gene3D G3DSA:3.30.1490.110 84 171 9.9E-90 T 14-10-2018 Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 SUPERFAMILY SSF53067 7 197 1.58E-44 T 14-10-2018 Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 Gene3D G3DSA:3.30.420.40 199 349 9.9E-90 T 14-10-2018 Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 Pfam PF02491 SHS2 domain inserted in FTSA 88 163 1.4E-19 T 14-10-2018 IPR003494 SHS2 domain inserted in FtsA GO:0005515|GO:0051301 Amico_0823 d7a095076d7540c35b5bd2ca88debb64 438 Pfam PF14450 Cell division protein FtsA 213 342 1.5E-14 T 14-10-2018 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 239 261 5.2E-78 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 31 44 5.2E-78 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 158 174 5.2E-78 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 120 137 5.2E-78 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 6 25 5.2E-78 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 176 193 5.2E-78 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 93 109 5.2E-78 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 138 156 5.2E-78 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 PRINTS PR00476 ATP-dependent phosphofructokinase family signature 212 224 5.2E-78 T 14-10-2018 IPR022953 ATP-dependent 6-phosphofructokinase GO:0003872|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 Gene3D G3DSA:3.40.50.460 142 251 8.3E-108 T 14-10-2018 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 PIRSF PIRSF000532 1 318 3.4E-112 T 14-10-2018 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type GO:0005524|GO:0006002|GO:0006096|GO:0008443 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 TIGRFAM TIGR02482 PFKA_ATP: 6-phosphofructokinase 3 296 3.8E-119 T 14-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 SUPERFAMILY SSF53784 2 310 9.68E-114 T 14-10-2018 IPR035966 Phosphofructokinase superfamily GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 Pfam PF00365 Phosphofructokinase 3 274 3.0E-105 T 14-10-2018 IPR000023 Phosphofructokinase domain GO:0003872|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385|Reactome: R-HSA-70171 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 Gene3D G3DSA:3.40.50.450 3 285 8.3E-108 T 14-10-2018 Amico_1481 2607ad7e8e8e7d9c986d1dcd9cb922fc 319 Hamap MF_00339 ATP-dependent 6-phosphofructokinase [pfkA]. 1 318 43.381 T 14-10-2018 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic GO:0003872|GO:0005524|GO:0006002|GO:0006096 KEGG: 00010+2.7.1.11|KEGG: 00030+2.7.1.11|KEGG: 00051+2.7.1.11|KEGG: 00052+2.7.1.11|KEGG: 00680+2.7.1.11|MetaCyc: PWY-1042|MetaCyc: PWY-1861|MetaCyc: PWY-5484|MetaCyc: PWY-7385 Amico_1299 cf3092b4f3428f7a2b8217c7c716e004 326 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 57 309 3.6E-39 T 14-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Amico_1299 cf3092b4f3428f7a2b8217c7c716e004 326 SUPERFAMILY SSF53850 120 290 2.21E-7 T 14-10-2018 Amico_1299 cf3092b4f3428f7a2b8217c7c716e004 326 PIRSF PIRSF017082 1 324 2.4E-76 T 14-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Amico_1299 cf3092b4f3428f7a2b8217c7c716e004 326 Gene3D G3DSA:3.40.190.150 36 316 6.7E-72 T 14-10-2018 Amico_1299 cf3092b4f3428f7a2b8217c7c716e004 326 Gene3D G3DSA:3.40.190.10 131 253 6.7E-72 T 14-10-2018 Amico_0103 2364a65f9a00a15dfc32a31c9960e6b5 402 Gene3D G3DSA:3.30.750.80 79 183 3.2E-26 T 14-10-2018 Amico_0103 2364a65f9a00a15dfc32a31c9960e6b5 402 SUPERFAMILY SSF53335 87 395 5.82E-61 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0103 2364a65f9a00a15dfc32a31c9960e6b5 402 Pfam PF10672 S-adenosylmethionine-dependent methyltransferase 193 362 6.7E-14 T 14-10-2018 IPR019614 S-adenosylmethionine-dependent methyltransferase GO:0008168 Amico_0103 2364a65f9a00a15dfc32a31c9960e6b5 402 Gene3D G3DSA:2.30.130.10 12 75 1.7E-10 T 14-10-2018 IPR036974 PUA domain superfamily GO:0003723 Amico_0103 2364a65f9a00a15dfc32a31c9960e6b5 402 Gene3D G3DSA:3.40.50.150 188 400 2.5E-57 T 14-10-2018 Amico_0158 9098b57923d46b3362b32bb78c1aa9a0 257 Gene3D G3DSA:3.40.50.300 1 255 5.4E-61 T 14-10-2018 Amico_0158 9098b57923d46b3362b32bb78c1aa9a0 257 SUPERFAMILY SSF52540 4 253 1.88E-63 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0158 9098b57923d46b3362b32bb78c1aa9a0 257 SMART SM00382 29 210 1.2E-6 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0158 9098b57923d46b3362b32bb78c1aa9a0 257 Pfam PF00005 ABC transporter 21 180 1.8E-31 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0158 9098b57923d46b3362b32bb78c1aa9a0 257 Pfam PF12399 Branched-chain amino acid ATP-binding cassette transporter 231 252 1.6E-9 T 14-10-2018 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal Amico_1623 219b1f66e9bda2c901ad24a1bb5d7c91 57 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 40 51 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1623 219b1f66e9bda2c901ad24a1bb5d7c91 57 Gene3D G3DSA:3.30.70.20 32 57 1.2E-9 T 14-10-2018 Amico_1623 219b1f66e9bda2c901ad24a1bb5d7c91 57 Gene3D G3DSA:3.30.70.20 1 31 3.0E-8 T 14-10-2018 Amico_1623 219b1f66e9bda2c901ad24a1bb5d7c91 57 Pfam PF12838 4Fe-4S dicluster domain 10 54 9.5E-11 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_1623 219b1f66e9bda2c901ad24a1bb5d7c91 57 SUPERFAMILY SSF54862 4 56 4.41E-21 T 14-10-2018 Amico_1281 c911b726952b8c3850352804d85e2eb9 356 Pfam PF01544 CorA-like Mg2+ transporter protein 64 352 2.0E-78 T 14-10-2018 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB GO:0016020|GO:0030001|GO:0046873|GO:0055085 Amico_1281 c911b726952b8c3850352804d85e2eb9 356 SUPERFAMILY SSF143865 13 290 7.19E-74 T 14-10-2018 Amico_1281 c911b726952b8c3850352804d85e2eb9 356 SUPERFAMILY SSF144083 291 354 8.89E-23 T 14-10-2018 Amico_1281 c911b726952b8c3850352804d85e2eb9 356 Gene3D G3DSA:1.20.58.340 166 278 5.5E-39 T 14-10-2018 Amico_1281 c911b726952b8c3850352804d85e2eb9 356 TIGRFAM TIGR00383 corA: magnesium and cobalt transport protein CorA 65 356 6.6E-97 T 14-10-2018 IPR004488 Magnesium/cobalt transport protein CorA GO:0006824|GO:0015087|GO:0015095|GO:0015693|GO:0016020 Amico_1281 c911b726952b8c3850352804d85e2eb9 356 Gene3D G3DSA:3.30.460.20 3 165 2.8E-43 T 14-10-2018 Amico_1281 c911b726952b8c3850352804d85e2eb9 356 Gene3D G3DSA:1.20.58.340 279 356 1.0E-36 T 14-10-2018 Amico_0966 417b0cab40d80c9a51cf5c894429fbba 434 Pfam PF13438 Domain of unknown function (DUF4113) 378 430 3.7E-13 T 14-10-2018 IPR025188 Domain of unknown function DUF4113 Amico_0966 417b0cab40d80c9a51cf5c894429fbba 434 Pfam PF11799 impB/mucB/samB family C-terminal domain 246 359 5.4E-12 T 14-10-2018 IPR017961 DNA polymerase, Y-family, little finger domain GO:0003684|GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Amico_0966 417b0cab40d80c9a51cf5c894429fbba 434 Gene3D G3DSA:1.10.150.20 177 237 5.5E-9 T 14-10-2018 Amico_0966 417b0cab40d80c9a51cf5c894429fbba 434 Gene3D G3DSA:2.30.40.20 17 80 3.8E-43 T 14-10-2018 Amico_0966 417b0cab40d80c9a51cf5c894429fbba 434 Gene3D G3DSA:3.30.70.270 9 161 3.8E-43 T 14-10-2018 Amico_0966 417b0cab40d80c9a51cf5c894429fbba 434 SUPERFAMILY SSF56672 9 244 2.13E-58 T 14-10-2018 Amico_0966 417b0cab40d80c9a51cf5c894429fbba 434 Pfam PF00817 impB/mucB/samB family 13 157 1.1E-32 T 14-10-2018 IPR001126 UmuC domain GO:0006281 KEGG: 00230+2.7.7.7|KEGG: 00240+2.7.7.7|Reactome: R-HSA-5656169 Amico_0750 e5224e381208cfddde29b53df379edef 281 TIGRFAM TIGR00444 mazG: MazG family protein 15 263 2.1E-95 T 14-10-2018 IPR011551 NTP pyrophosphohydrolase MazG Amico_0750 e5224e381208cfddde29b53df379edef 281 Gene3D G3DSA:1.10.287.1080 135 266 1.4E-39 T 14-10-2018 Amico_0750 e5224e381208cfddde29b53df379edef 281 SUPERFAMILY SSF101386 10 109 1.6E-25 T 14-10-2018 Amico_0750 e5224e381208cfddde29b53df379edef 281 Gene3D G3DSA:1.10.287.1080 8 128 1.8E-44 T 14-10-2018 Amico_0750 e5224e381208cfddde29b53df379edef 281 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 31 104 1.8E-27 T 14-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Amico_0750 e5224e381208cfddde29b53df379edef 281 Pfam PF03819 MazG nucleotide pyrophosphohydrolase domain 176 234 6.9E-7 T 14-10-2018 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core Amico_0750 e5224e381208cfddde29b53df379edef 281 SUPERFAMILY SSF101386 142 242 8.6E-22 T 14-10-2018 Amico_1527 ec9b7e7bf8255f7da2b183eaf905fd11 278 Pfam PF01926 50S ribosome-binding GTPase 112 186 4.1E-12 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_1527 ec9b7e7bf8255f7da2b183eaf905fd11 278 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 157 172 4.1E-5 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_1527 ec9b7e7bf8255f7da2b183eaf905fd11 278 PRINTS PR00326 GTP1/OBG GTP-binding protein family signature 112 132 4.1E-5 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_1527 ec9b7e7bf8255f7da2b183eaf905fd11 278 Gene3D G3DSA:3.40.50.300 4 164 1.8E-33 T 14-10-2018 Amico_1527 ec9b7e7bf8255f7da2b183eaf905fd11 278 SUPERFAMILY SSF52540 10 176 7.0E-31 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1527 ec9b7e7bf8255f7da2b183eaf905fd11 278 PIRSF PIRSF006230 2 272 4.4E-57 T 14-10-2018 IPR016478 GTPase, MTG1 Amico_1527 ec9b7e7bf8255f7da2b183eaf905fd11 278 Gene3D G3DSA:1.10.1580.10 168 270 3.9E-17 T 14-10-2018 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily Amico_0266 3a54db8ceae47b56aafff2b48920498b 133 SUPERFAMILY SSF54593 1 133 6.5E-33 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Amico_0266 3a54db8ceae47b56aafff2b48920498b 133 Pfam PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily 7 117 2.1E-23 T 14-10-2018 Amico_0266 3a54db8ceae47b56aafff2b48920498b 133 Gene3D G3DSA:3.10.180.10 1 133 3.1E-42 T 14-10-2018 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase Amico_0266 3a54db8ceae47b56aafff2b48920498b 133 TIGRFAM TIGR03081 metmalonyl_epim: methylmalonyl-CoA epimerase 5 132 2.9E-51 T 14-10-2018 IPR017515 Methylmalonyl-CoA epimerase KEGG: 00280+5.1.99.1|KEGG: 00630+5.1.99.1|KEGG: 00640+5.1.99.1|KEGG: 00720+5.1.99.1|MetaCyc: PWY-5741|MetaCyc: PWY-5743|MetaCyc: PWY-5789|MetaCyc: PWY-6728|MetaCyc: PWY-7384|MetaCyc: PWY-7854|Reactome: R-HSA-71032 Amico_1086 1355950890169d71c43ea07ecef1310e 294 Pfam PF08340 Domain of unknown function (DUF1732) 210 294 1.5E-33 T 14-10-2018 IPR013551 Domain of unknown function DUF1732 Amico_1086 1355950890169d71c43ea07ecef1310e 294 Pfam PF03755 YicC-like family, N-terminal region 4 156 2.3E-37 T 14-10-2018 IPR013527 YicC-like, N-terminal Amico_1086 1355950890169d71c43ea07ecef1310e 294 TIGRFAM TIGR00255 TIGR00255: TIGR00255 family protein 2 294 6.5E-64 T 14-10-2018 IPR005229 Conserved hypothetical protein CHP00255 Amico_1812 0fd55057530d2ca382fd2c4db0596cda 394 Pfam PF07690 Major Facilitator Superfamily 17 291 5.8E-25 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Amico_1812 0fd55057530d2ca382fd2c4db0596cda 394 Gene3D G3DSA:1.20.1250.20 8 199 1.3E-27 T 14-10-2018 Amico_1812 0fd55057530d2ca382fd2c4db0596cda 394 Gene3D G3DSA:1.20.1250.20 200 389 1.6E-12 T 14-10-2018 Amico_1812 0fd55057530d2ca382fd2c4db0596cda 394 SUPERFAMILY SSF103473 10 388 3.53E-48 T 14-10-2018 IPR036259 MFS transporter superfamily Amico_0505 a5d7f6b24f823beaa3488590409f7a29 241 PIRSF PIRSF015736 1 240 3.0E-46 T 14-10-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase Amico_0505 a5d7f6b24f823beaa3488590409f7a29 241 Gene3D G3DSA:3.40.50.12500 1 238 2.7E-51 T 14-10-2018 Amico_0745 9d4d400b1c795faa2142a5ef92e45654 467 Hamap MF_01631 Bifunctional protein GlmU [glmU]. 6 456 36.361 T 14-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 Amico_0745 9d4d400b1c795faa2142a5ef92e45654 467 Pfam PF14602 Hexapeptide repeat of succinyl-transferase 398 433 1.9E-9 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_0745 9d4d400b1c795faa2142a5ef92e45654 467 Pfam PF12804 MobA-like NTP transferase domain 9 136 1.7E-16 T 14-10-2018 IPR025877 MobA-like NTP transferase Amico_0745 9d4d400b1c795faa2142a5ef92e45654 467 Gene3D G3DSA:2.160.10.10 234 459 2.7E-65 T 14-10-2018 Amico_0745 9d4d400b1c795faa2142a5ef92e45654 467 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 322 355 2.9E-6 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_0745 9d4d400b1c795faa2142a5ef92e45654 467 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 275 304 3.8E-4 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_0745 9d4d400b1c795faa2142a5ef92e45654 467 TIGRFAM TIGR01173 glmU: UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase 9 456 3.9E-155 T 14-10-2018 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase GO:0000287|GO:0000902|GO:0003977|GO:0005737|GO:0009103|GO:0009252|GO:0019134 KEGG: 00520+2.3.1.157+2.7.7.23|MetaCyc: PWY-5514 Amico_0745 9d4d400b1c795faa2142a5ef92e45654 467 SUPERFAMILY SSF51161 259 442 1.45E-49 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Amico_0745 9d4d400b1c795faa2142a5ef92e45654 467 SUPERFAMILY SSF53448 7 256 2.07E-49 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_0745 9d4d400b1c795faa2142a5ef92e45654 467 Gene3D G3DSA:3.90.550.10 2 231 2.5E-55 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_1683 44a358de10d81461826dba778994a1b7 232 SUPERFAMILY SSF52172 4 134 1.2E-44 T 14-10-2018 IPR011006 CheY-like superfamily Amico_1683 44a358de10d81461826dba778994a1b7 232 SUPERFAMILY SSF46894 133 226 3.57E-28 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Amico_1683 44a358de10d81461826dba778994a1b7 232 Pfam PF00486 Transcriptional regulatory protein, C terminal 151 226 3.9E-25 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Amico_1683 44a358de10d81461826dba778994a1b7 232 Pfam PF00072 Response regulator receiver domain 6 117 1.9E-29 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1683 44a358de10d81461826dba778994a1b7 232 Gene3D G3DSA:3.40.50.2300 2 130 2.1E-41 T 14-10-2018 Amico_1683 44a358de10d81461826dba778994a1b7 232 Gene3D G3DSA:1.10.10.10 131 231 4.6E-30 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1683 44a358de10d81461826dba778994a1b7 232 SMART SM00862 151 226 8.7E-29 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Amico_1683 44a358de10d81461826dba778994a1b7 232 SMART SM00448 4 117 8.5E-45 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_0130 81d5df29076d2c0a186fea03b5dd69e2 236 Pfam PF00392 Bacterial regulatory proteins, gntR family 14 77 1.7E-20 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0130 81d5df29076d2c0a186fea03b5dd69e2 236 Pfam PF07729 FCD domain 105 225 3.5E-25 T 14-10-2018 IPR011711 GntR, C-terminal Amico_0130 81d5df29076d2c0a186fea03b5dd69e2 236 SMART SM00895 104 226 6.6E-24 T 14-10-2018 IPR011711 GntR, C-terminal Amico_0130 81d5df29076d2c0a186fea03b5dd69e2 236 Gene3D G3DSA:1.10.10.10 4 77 5.5E-22 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0130 81d5df29076d2c0a186fea03b5dd69e2 236 SUPERFAMILY SSF48008 100 227 1.67E-26 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_0130 81d5df29076d2c0a186fea03b5dd69e2 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 37 51 4.4E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0130 81d5df29076d2c0a186fea03b5dd69e2 236 PRINTS PR00035 GntR bacterial regulatory protein HTH signature 51 67 4.4E-9 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0130 81d5df29076d2c0a186fea03b5dd69e2 236 SMART SM00345 18 77 1.9E-19 T 14-10-2018 IPR000524 Transcription regulator HTH, GntR GO:0003700|GO:0006355 Amico_0130 81d5df29076d2c0a186fea03b5dd69e2 236 Gene3D G3DSA:1.20.120.530 99 231 9.1E-28 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_0130 81d5df29076d2c0a186fea03b5dd69e2 236 SUPERFAMILY SSF46785 5 81 7.04E-21 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0353 ae7c3daca1ad9d72833ce71432e50f6f 221 Gene3D G3DSA:1.10.530.10 44 219 1.9E-19 T 14-10-2018 Amico_0353 ae7c3daca1ad9d72833ce71432e50f6f 221 Pfam PF01464 Transglycosylase SLT domain 96 197 1.9E-14 T 14-10-2018 IPR008258 Transglycosylase SLT domain 1 Amico_0353 ae7c3daca1ad9d72833ce71432e50f6f 221 SUPERFAMILY SSF53955 86 207 3.26E-19 T 14-10-2018 IPR023346 Lysozyme-like domain superfamily Amico_1834 bacf0f8f79761616e7d60a93d9fa76d5 465 SUPERFAMILY SSF51556 60 388 4.68E-99 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_1834 bacf0f8f79761616e7d60a93d9fa76d5 465 SUPERFAMILY SSF51338 7 450 5.17E-25 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1834 bacf0f8f79761616e7d60a93d9fa76d5 465 Pfam PF01979 Amidohydrolase family 57 415 1.3E-25 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Amico_1834 bacf0f8f79761616e7d60a93d9fa76d5 465 Gene3D G3DSA:2.30.40.10 10 457 2.1E-144 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1834 bacf0f8f79761616e7d60a93d9fa76d5 465 TIGRFAM TIGR03178 allantoinase: allantoinase 8 456 3.7E-108 T 14-10-2018 IPR017593 Allantoinase GO:0000256|GO:0004038|GO:0008270|GO:0050897 KEGG: 00230+3.5.2.5|MetaCyc: PWY-5697|MetaCyc: PWY-5698 Amico_1834 bacf0f8f79761616e7d60a93d9fa76d5 465 Gene3D G3DSA:3.20.20.140 60 384 2.1E-144 T 14-10-2018 Amico_1834 bacf0f8f79761616e7d60a93d9fa76d5 465 ProSitePatterns PS00482 Dihydroorotase signature 1. 63 71 - T 14-10-2018 IPR002195 Dihydroorotase, conserved site GO:0016812 KEGG: 00240+3.5.2.3|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Amico_0230 e5ab84ff4aee756619c2c723c17f268f 281 TIGRFAM TIGR00652 DapF: diaminopimelate epimerase 3 272 1.7E-72 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Amico_0230 e5ab84ff4aee756619c2c723c17f268f 281 Pfam PF01678 Diaminopimelate epimerase 144 265 1.4E-16 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Amico_0230 e5ab84ff4aee756619c2c723c17f268f 281 Pfam PF01678 Diaminopimelate epimerase 4 121 1.2E-29 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Amico_0230 e5ab84ff4aee756619c2c723c17f268f 281 Hamap MF_00197 Diaminopimelate epimerase [dapF]. 2 273 31.257 T 14-10-2018 IPR001653 Diaminopimelate epimerase, DapF GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Amico_0230 e5ab84ff4aee756619c2c723c17f268f 281 ProSitePatterns PS01326 Diaminopimelate epimerase signature. 65 79 - T 14-10-2018 IPR018510 Diaminopimelate epimerase, active site GO:0005737|GO:0008837|GO:0009089 KEGG: 00300+5.1.1.7|MetaCyc: PWY-2941|MetaCyc: PWY-5097 Amico_0230 e5ab84ff4aee756619c2c723c17f268f 281 Gene3D G3DSA:3.10.310.10 4 269 1.5E-76 T 14-10-2018 Amico_0230 e5ab84ff4aee756619c2c723c17f268f 281 SUPERFAMILY SSF54506 2 122 2.88E-34 T 14-10-2018 Amico_0230 e5ab84ff4aee756619c2c723c17f268f 281 SUPERFAMILY SSF54506 131 270 4.71E-27 T 14-10-2018 Amico_0230 e5ab84ff4aee756619c2c723c17f268f 281 Gene3D G3DSA:3.10.310.10 118 263 1.5E-76 T 14-10-2018 Amico_1342 b794f9441c27ac44b25f77c0c51c19cd 345 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 39 318 3.1E-74 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_1342 b794f9441c27ac44b25f77c0c51c19cd 345 Gene3D G3DSA:3.40.190.170 25 345 9.9E-101 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1003 188af91f1821e11171944bb22d815e7a 162 Pfam PF06177 QueT transporter 14 154 2.6E-47 T 14-10-2018 IPR010387 Queuosine precursor transporter QueT GO:0005886 Amico_1003 188af91f1821e11171944bb22d815e7a 162 PIRSF PIRSF031501 1 162 9.1E-41 T 14-10-2018 IPR010387 Queuosine precursor transporter QueT GO:0005886 Amico_1045 ed9850ce48f862a94dfdc2ee7643cfd6 178 Pfam PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP 10 178 3.3E-63 T 14-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 Amico_1045 ed9850ce48f862a94dfdc2ee7643cfd6 178 PIRSF PIRSF015617 4 178 1.9E-58 T 14-10-2018 IPR003724 ATP:cob(I)alamin adenosyltransferase CobA/CobO/ButR GO:0005524|GO:0008817|GO:0009236 KEGG: 00860+2.5.1.17 Amico_1045 ed9850ce48f862a94dfdc2ee7643cfd6 178 SUPERFAMILY SSF52540 8 178 1.95E-54 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1045 ed9850ce48f862a94dfdc2ee7643cfd6 178 Gene3D G3DSA:3.40.50.300 2 178 2.6E-63 T 14-10-2018 Amico_1653 0af2dfb720766d4ebddd700ad7e3e0c6 331 Gene3D G3DSA:3.20.20.210 1 328 1.4E-55 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Amico_1653 0af2dfb720766d4ebddd700ad7e3e0c6 331 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 27 326 3.0E-30 T 14-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Amico_1653 0af2dfb720766d4ebddd700ad7e3e0c6 331 SUPERFAMILY SSF51726 1 327 7.46E-43 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Amico_0960 01f742b585155570ad6b24c7dd9a8bec 326 SMART SM00363 32 90 0.0011 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0960 01f742b585155570ad6b24c7dd9a8bec 326 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 29 318 1.2E-83 T 14-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0960 01f742b585155570ad6b24c7dd9a8bec 326 Gene3D G3DSA:3.10.290.10 16 87 3.2E-10 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Amico_0960 01f742b585155570ad6b24c7dd9a8bec 326 SUPERFAMILY SSF55120 91 317 1.97E-72 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0960 01f742b585155570ad6b24c7dd9a8bec 326 Pfam PF00849 RNA pseudouridylate synthase 107 260 5.3E-36 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0960 01f742b585155570ad6b24c7dd9a8bec 326 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 152 166 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0960 01f742b585155570ad6b24c7dd9a8bec 326 Gene3D G3DSA:3.30.2350.10 99 322 1.2E-74 T 14-10-2018 Amico_1146 91dbcd367e6bb239424bd2fb5da93cf0 359 SUPERFAMILY SSF56219 19 246 1.08E-20 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Amico_1146 91dbcd367e6bb239424bd2fb5da93cf0 359 Gene3D G3DSA:3.60.10.10 19 269 4.9E-24 T 14-10-2018 IPR036691 Endonuclease/exonuclease/phosphatase superfamily Amico_1146 91dbcd367e6bb239424bd2fb5da93cf0 359 Pfam PF03372 Endonuclease/Exonuclease/phosphatase family 29 236 7.0E-6 T 14-10-2018 IPR005135 Endonuclease/exonuclease/phosphatase Amico_1146 91dbcd367e6bb239424bd2fb5da93cf0 359 SUPERFAMILY SSF57884 308 357 6.93E-7 T 14-10-2018 IPR035451 Ada-like domain superfamily Amico_1265 90da924b18ec3eaa1fe2e5c3fdc098d1 181 Pfam PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit 52 169 1.3E-19 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1265 90da924b18ec3eaa1fe2e5c3fdc098d1 181 Gene3D G3DSA:3.30.460.80 26 149 2.6E-12 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1265 90da924b18ec3eaa1fe2e5c3fdc098d1 181 ProDom PD001581 OXIDOREDUCTASE SUBUNIT NADH DEHYDROGENASE CHAIN C NAD DEHYDROGENASE UBIQUINONE F420H2 105 158 5.0E-6 T 14-10-2018 IPR001268 NADH:ubiquinone oxidoreductase, 30kDa subunit GO:0008137|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1265 90da924b18ec3eaa1fe2e5c3fdc098d1 181 SUPERFAMILY SSF143243 43 174 2.09E-22 T 14-10-2018 IPR037232 NADH:ubiquinone oxidoreductase, 30kDa subunit superfamily Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_0699 97012dc68c19e56b2b0c5a97de382e9b 226 SUPERFAMILY SSF52172 2 178 9.36E-39 T 14-10-2018 IPR011006 CheY-like superfamily Amico_0699 97012dc68c19e56b2b0c5a97de382e9b 226 SMART SM00862 145 220 1.4E-22 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Amico_0699 97012dc68c19e56b2b0c5a97de382e9b 226 SMART SM00448 1 112 1.5E-39 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_0699 97012dc68c19e56b2b0c5a97de382e9b 226 Pfam PF00486 Transcriptional regulatory protein, C terminal 148 219 8.3E-25 T 14-10-2018 IPR001867 OmpR/PhoB-type DNA-binding domain GO:0000160|GO:0003677|GO:0006355 Amico_0699 97012dc68c19e56b2b0c5a97de382e9b 226 Gene3D G3DSA:1.10.10.10 118 223 6.9E-31 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0699 97012dc68c19e56b2b0c5a97de382e9b 226 Pfam PF00072 Response regulator receiver domain 4 113 3.3E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_0699 97012dc68c19e56b2b0c5a97de382e9b 226 Gene3D G3DSA:3.40.50.2300 1 117 4.0E-36 T 14-10-2018 Amico_0371 f5805a2f1994610f4f479b0cddc47e06 314 TIGRFAM TIGR00005 rluA_subfam: pseudouridine synthase, RluA family 10 279 1.2E-57 T 14-10-2018 IPR006225 Pseudouridine synthase, RluC/RluD GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0371 f5805a2f1994610f4f479b0cddc47e06 314 ProSitePatterns PS01129 Rlu family of pseudouridine synthase signature. 131 145 - T 14-10-2018 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0371 f5805a2f1994610f4f479b0cddc47e06 314 Pfam PF00849 RNA pseudouridylate synthase 91 236 1.9E-27 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0371 f5805a2f1994610f4f479b0cddc47e06 314 Gene3D G3DSA:3.30.2350.10 82 305 1.7E-54 T 14-10-2018 Amico_0371 f5805a2f1994610f4f479b0cddc47e06 314 SUPERFAMILY SSF55174 11 105 8.05E-5 T 14-10-2018 Amico_0371 f5805a2f1994610f4f479b0cddc47e06 314 Gene3D G3DSA:3.10.290.10 1 68 1.2E-9 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Amico_0371 f5805a2f1994610f4f479b0cddc47e06 314 SUPERFAMILY SSF55120 82 308 3.2E-55 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_0371 f5805a2f1994610f4f479b0cddc47e06 314 SMART SM00363 14 75 0.0093 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0694 e99c825d79d93169aaa0ff842fc89b38 263 TIGRFAM TIGR03592 yidC_oxa1_cterm: membrane protein insertase, YidC/Oxa1 family 25 240 5.3E-58 T 14-10-2018 IPR028055 Membrane insertase YidC/Oxa1, C-terminal Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0694 e99c825d79d93169aaa0ff842fc89b38 263 Pfam PF02096 60Kd inner membrane protein 26 240 1.2E-55 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Amico_0694 e99c825d79d93169aaa0ff842fc89b38 263 PRINTS PR01900 YidC translocation/secretion protein signature 177 192 1.5E-8 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Amico_0694 e99c825d79d93169aaa0ff842fc89b38 263 PRINTS PR01900 YidC translocation/secretion protein signature 11 27 1.5E-8 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Amico_0694 e99c825d79d93169aaa0ff842fc89b38 263 PRINTS PR01900 YidC translocation/secretion protein signature 195 219 1.5E-8 T 14-10-2018 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 GO:0016021|GO:0032977 Amico_1570 d1b8ba8a4ba34f6ec749ba1421e65379 334 SUPERFAMILY SSF53822 30 271 8.07E-13 T 14-10-2018 IPR028082 Periplasmic binding protein-like I Amico_1570 d1b8ba8a4ba34f6ec749ba1421e65379 334 Gene3D G3DSA:3.40.50.2300 32 291 2.9E-99 T 14-10-2018 Amico_1570 d1b8ba8a4ba34f6ec749ba1421e65379 334 Pfam PF02608 ABC transporter substrate-binding protein PnrA-like 29 322 1.1E-62 T 14-10-2018 IPR003760 ABC transporter substrate-binding protein PnrA-like GO:0005886 Amico_1570 d1b8ba8a4ba34f6ec749ba1421e65379 334 Gene3D G3DSA:3.40.50.2300 132 328 2.9E-99 T 14-10-2018 Amico_0721 c2719b0f786d80f8d56982e117472000 182 Pfam PF09021 HutP 52 180 5.1E-41 T 14-10-2018 IPR015111 Hut operon regulatory protein HutP Amico_0721 c2719b0f786d80f8d56982e117472000 182 SUPERFAMILY SSF111064 50 182 4.32E-25 T 14-10-2018 IPR036482 Hut operon regulatory protein HutP superfamily Amico_0721 c2719b0f786d80f8d56982e117472000 182 Gene3D G3DSA:3.40.1510.10 45 182 2.6E-39 T 14-10-2018 IPR036482 Hut operon regulatory protein HutP superfamily Amico_0255 bd64bf1be7c3e27c16b01ffc13edc83d 281 SUPERFAMILY SSF53613 5 265 2.34E-79 T 14-10-2018 IPR029056 Ribokinase-like Amico_0255 bd64bf1be7c3e27c16b01ffc13edc83d 281 TIGRFAM TIGR00097 HMP-P_kinase: hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase 8 264 1.7E-105 T 14-10-2018 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase GO:0008972|GO:0009228 KEGG: 00730+2.7.1.49|MetaCyc: PWY-6910|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_0255 bd64bf1be7c3e27c16b01ffc13edc83d 281 Gene3D G3DSA:3.40.1190.20 4 278 5.7E-104 T 14-10-2018 IPR029056 Ribokinase-like Amico_0255 bd64bf1be7c3e27c16b01ffc13edc83d 281 Pfam PF08543 Phosphomethylpyrimidine kinase 15 262 1.0E-96 T 14-10-2018 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase Reactome: R-HSA-6798695|Reactome: R-HSA-964975 Amico_0730 bf901f70fa99970782fa5ccc3cd835a0 359 Pfam PF01435 Peptidase family M48 72 233 1.2E-21 T 14-10-2018 IPR001915 Peptidase M48 GO:0004222|GO:0006508 Amico_1909 b2d4039985d04075af4aeb67bb54620f 392 SUPERFAMILY SSF53383 3 387 5.92E-89 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1909 b2d4039985d04075af4aeb67bb54620f 392 TIGRFAM TIGR01977 am_tr_V_EF2568: cysteine desulfurase family protein 3 385 1.3E-116 T 14-10-2018 IPR010969 Cysteine desulfurase-related, unknown function Amico_1909 b2d4039985d04075af4aeb67bb54620f 392 Pfam PF00266 Aminotransferase class-V 3 376 5.1E-75 T 14-10-2018 IPR000192 Aminotransferase class V domain Amico_1909 b2d4039985d04075af4aeb67bb54620f 392 Gene3D G3DSA:3.90.1150.10 3 379 1.7E-102 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1909 b2d4039985d04075af4aeb67bb54620f 392 Gene3D G3DSA:3.40.640.10 17 274 1.7E-102 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0256 8a53d5bb692c0eece448bc76b70b50c2 284 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 126 140 3.2E-25 T 14-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_0256 8a53d5bb692c0eece448bc76b70b50c2 284 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 38 59 3.2E-25 T 14-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_0256 8a53d5bb692c0eece448bc76b70b50c2 284 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 25 32 3.2E-25 T 14-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_0256 8a53d5bb692c0eece448bc76b70b50c2 284 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 169 186 3.2E-25 T 14-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_0256 8a53d5bb692c0eece448bc76b70b50c2 284 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 69 77 3.2E-25 T 14-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_0256 8a53d5bb692c0eece448bc76b70b50c2 284 PRINTS PR01099 Hydroxyethylthiazole kinase family signature 95 112 3.2E-25 T 14-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_0256 8a53d5bb692c0eece448bc76b70b50c2 284 Gene3D G3DSA:3.40.1190.20 1 273 5.3E-67 T 14-10-2018 IPR029056 Ribokinase-like Amico_0256 8a53d5bb692c0eece448bc76b70b50c2 284 Hamap MF_00228 Hydroxyethylthiazole kinase [thiM]. 19 270 24.296 T 14-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_0256 8a53d5bb692c0eece448bc76b70b50c2 284 SUPERFAMILY SSF53613 16 270 3.07E-42 T 14-10-2018 IPR029056 Ribokinase-like Amico_0256 8a53d5bb692c0eece448bc76b70b50c2 284 Pfam PF02110 Hydroxyethylthiazole kinase family 19 265 5.6E-60 T 14-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_0256 8a53d5bb692c0eece448bc76b70b50c2 284 PIRSF PIRSF000513 11 277 1.1E-61 T 14-10-2018 IPR000417 Hydroxyethylthiazole kinase GO:0004417|GO:0009228 KEGG: 00730+2.7.1.50|MetaCyc: PWY-6897|MetaCyc: PWY-7356|MetaCyc: PWY-7357 Amico_1065 3083289f35a10ad12097c1d4d6f16a36 315 Gene3D G3DSA:3.20.20.70 4 312 5.0E-112 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_1065 3083289f35a10ad12097c1d4d6f16a36 315 Pfam PF03060 Nitronate monooxygenase 6 300 2.4E-74 T 14-10-2018 IPR004136 Nitronate monooxygenase GO:0018580|GO:0055114 KEGG: 00910+1.13.12.16|MetaCyc: PWY-723 Amico_1065 3083289f35a10ad12097c1d4d6f16a36 315 SUPERFAMILY SSF51412 5 306 4.58E-76 T 14-10-2018 Amico_0772 b90bf52a80731c84aa50b5fa42fefbb5 299 Gene3D G3DSA:3.30.420.40 23 186 6.9E-8 T 14-10-2018 Amico_0772 b90bf52a80731c84aa50b5fa42fefbb5 299 Gene3D G3DSA:3.30.1490.300 89 148 6.9E-8 T 14-10-2018 Amico_0772 b90bf52a80731c84aa50b5fa42fefbb5 299 Gene3D G3DSA:3.30.420.40 187 204 6.9E-8 T 14-10-2018 Amico_1079 b9ca9c0a35b1e8099d665f28c53e9435 91 SMART SM00411 1 91 1.5E-41 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Amico_1079 b9ca9c0a35b1e8099d665f28c53e9435 91 PRINTS PR01727 Prokaryotic integration host factor signature 40 55 1.6E-12 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Amico_1079 b9ca9c0a35b1e8099d665f28c53e9435 91 PRINTS PR01727 Prokaryotic integration host factor signature 75 89 1.6E-12 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Amico_1079 b9ca9c0a35b1e8099d665f28c53e9435 91 Pfam PF00216 Bacterial DNA-binding protein 1 90 2.0E-31 T 14-10-2018 IPR000119 Histone-like DNA-binding protein GO:0003677 Amico_1079 b9ca9c0a35b1e8099d665f28c53e9435 91 SUPERFAMILY SSF47729 1 91 1.0E-29 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Amico_1079 b9ca9c0a35b1e8099d665f28c53e9435 91 Gene3D G3DSA:4.10.520.10 1 91 4.4E-34 T 14-10-2018 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily GO:0003677 Amico_0693 b506989f26f465103f1ef443ea73484b 86 ProDom PD004225 UPF0161 ALPHA-HEMOLYSIN YIDD UNCHARACTERIZED CYTOSOLIC PRECURSOR SIGNAL YTJA RNPA SIMILAR 17 69 5.0E-17 T 14-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Amico_0693 b506989f26f465103f1ef443ea73484b 86 Hamap MF_00386 Putative membrane protein insertion efficiency factor [yidD]. 2 70 24.418 T 14-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Amico_0693 b506989f26f465103f1ef443ea73484b 86 Pfam PF01809 Haemolytic domain 4 69 4.4E-30 T 14-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Amico_0693 b506989f26f465103f1ef443ea73484b 86 SMART SM01234 2 69 9.9E-43 T 14-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Amico_0693 b506989f26f465103f1ef443ea73484b 86 TIGRFAM TIGR00278 TIGR00278: putative membrane protein insertion efficiency factor 7 71 1.0E-29 T 14-10-2018 IPR002696 Putative membrane protein insertion efficiency factor Amico_0669 0a980400116c0f78f07af78cc7d1be2c 147 Pfam PF03938 Outer membrane protein (OmpH-like) 74 140 2.2E-12 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Amico_0669 0a980400116c0f78f07af78cc7d1be2c 147 Pfam PF03938 Outer membrane protein (OmpH-like) 14 77 4.4E-8 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Amico_0669 0a980400116c0f78f07af78cc7d1be2c 147 Gene3D G3DSA:3.30.910.20 19 141 7.7E-22 T 14-10-2018 IPR024930 Skp domain superfamily Amico_0669 0a980400116c0f78f07af78cc7d1be2c 147 SUPERFAMILY SSF111384 27 141 3.27E-16 T 14-10-2018 Amico_0669 0a980400116c0f78f07af78cc7d1be2c 147 SMART SM00935 16 141 3.1E-19 T 14-10-2018 IPR005632 Chaperone protein Skp GO:0051082 Amico_0076 02099becc89233f9685f9d83bbc4ad78 187 Gene3D G3DSA:3.40.140.10 17 185 7.6E-15 T 14-10-2018 Amico_0076 02099becc89233f9685f9d83bbc4ad78 187 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 28 107 5.6E-9 T 14-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Amico_0076 02099becc89233f9685f9d83bbc4ad78 187 SUPERFAMILY SSF53927 19 118 2.26E-20 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Amico_0119 236632d0d03a6947ec32053221e2e4fa 393 Pfam PF00155 Aminotransferase class I and II 44 384 1.2E-38 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_0119 236632d0d03a6947ec32053221e2e4fa 393 SUPERFAMILY SSF53383 4 388 2.42E-104 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0119 236632d0d03a6947ec32053221e2e4fa 393 Gene3D G3DSA:3.40.640.10 69 292 9.9E-155 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0119 236632d0d03a6947ec32053221e2e4fa 393 TIGRFAM TIGR04350 C_S_lyase_PatB: putative C-S lyase 6 388 6.6E-156 T 14-10-2018 IPR027619 Putative C-S lyase KEGG: 00270+4.4.1.8|KEGG: 00450+4.4.1.8 Amico_0119 236632d0d03a6947ec32053221e2e4fa 393 Gene3D G3DSA:3.90.1150.10 14 384 9.9E-155 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0208 c4bb34e86e8678c12e39d99a5598ceb0 357 SUPERFAMILY SSF53850 154 290 4.71E-6 T 14-10-2018 Amico_0208 c4bb34e86e8678c12e39d99a5598ceb0 357 Gene3D G3DSA:3.40.190.170 36 336 3.4E-72 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_0208 c4bb34e86e8678c12e39d99a5598ceb0 357 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 44 314 1.8E-52 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_1491 3334668246d169622178a52069666a80 403 Pfam PF01916 Deoxyhypusine synthase 22 102 1.3E-4 T 14-10-2018 IPR002773 Deoxyhypusine synthase GO:0008612 Reactome: R-HSA-204626 Amico_0326 8f75e13c1be03da2c0c9bd2b21045d2a 436 Gene3D G3DSA:3.80.30.20 184 400 9.8E-19 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Amico_0326 8f75e13c1be03da2c0c9bd2b21045d2a 436 Pfam PF02310 B12 binding domain 34 161 8.6E-8 T 14-10-2018 IPR006158 Cobalamin (vitamin B12)-binding domain GO:0031419|GO:0046872 Reactome: R-HSA-196741 Amico_0326 8f75e13c1be03da2c0c9bd2b21045d2a 436 SUPERFAMILY SSF102114 176 391 1.44E-24 T 14-10-2018 Amico_0326 8f75e13c1be03da2c0c9bd2b21045d2a 436 SMART SM00729 186 400 1.0E-12 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Amico_0326 8f75e13c1be03da2c0c9bd2b21045d2a 436 Pfam PF04055 Radical SAM superfamily 195 358 1.4E-11 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_0031 87c2d41ae75e6f6d95f8f2cb7feba020 527 Gene3D G3DSA:3.40.50.300 177 343 3.5E-33 T 14-10-2018 Amico_0031 87c2d41ae75e6f6d95f8f2cb7feba020 527 SMART SM00487 1 180 4.1E-7 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Amico_0031 87c2d41ae75e6f6d95f8f2cb7feba020 527 Pfam PF00271 Helicase conserved C-terminal domain 252 326 6.8E-8 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_0031 87c2d41ae75e6f6d95f8f2cb7feba020 527 SUPERFAMILY SSF52540 20 336 8.15E-36 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0031 87c2d41ae75e6f6d95f8f2cb7feba020 527 Pfam PF00270 DEAD/DEAH box helicase 8 155 1.2E-7 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Amico_0031 87c2d41ae75e6f6d95f8f2cb7feba020 527 Gene3D G3DSA:3.40.50.300 1 176 1.1E-28 T 14-10-2018 Amico_0031 87c2d41ae75e6f6d95f8f2cb7feba020 527 SMART SM00490 233 326 4.4E-14 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_1783 1381ef2b06661d0427cd1410584997d0 198 Pfam PF13456 Reverse transcriptase-like 6 126 2.2E-21 T 14-10-2018 IPR002156 Ribonuclease H domain GO:0003676|GO:0004523 Amico_1783 1381ef2b06661d0427cd1410584997d0 198 Gene3D G3DSA:3.30.420.10 4 142 1.1E-38 T 14-10-2018 IPR036397 Ribonuclease H superfamily GO:0003676 Amico_1783 1381ef2b06661d0427cd1410584997d0 198 Pfam PF04434 SWIM zinc finger 160 191 4.4E-5 T 14-10-2018 IPR007527 Zinc finger, SWIM-type GO:0008270 Amico_1783 1381ef2b06661d0427cd1410584997d0 198 SUPERFAMILY SSF53098 5 124 6.07E-28 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Amico_1579 f65fa499bcfff6f852f23f5996428219 363 Gene3D G3DSA:4.10.1250.10 237 277 1.9E-15 T 14-10-2018 Amico_1579 f65fa499bcfff6f852f23f5996428219 363 Gene3D G3DSA:3.30.70.1400 51 136 4.6E-91 T 14-10-2018 Amico_1579 f65fa499bcfff6f852f23f5996428219 363 Pfam PF01571 Aminomethyltransferase folate-binding domain 7 258 5.5E-95 T 14-10-2018 IPR006222 Aminomethyltransferase, folate-binding domain Amico_1579 f65fa499bcfff6f852f23f5996428219 363 Gene3D G3DSA:2.40.30.110 278 363 7.9E-25 T 14-10-2018 Amico_1579 f65fa499bcfff6f852f23f5996428219 363 SUPERFAMILY SSF103025 1 279 5.02E-101 T 14-10-2018 Amico_1579 f65fa499bcfff6f852f23f5996428219 363 Pfam PF08669 Glycine cleavage T-protein C-terminal barrel domain 264 350 1.5E-19 T 14-10-2018 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Amico_1579 f65fa499bcfff6f852f23f5996428219 363 PIRSF PIRSF006487 1 363 5.6E-101 T 14-10-2018 IPR028896 Aminomethyltransferase-like KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Amico_1579 f65fa499bcfff6f852f23f5996428219 363 Hamap MF_00259 Aminomethyltransferase [gcvT]. 1 359 42.782 T 14-10-2018 IPR022903 Glycine cleavage system T protein, bacteria GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10 Amico_1579 f65fa499bcfff6f852f23f5996428219 363 TIGRFAM TIGR00528 gcvT: glycine cleavage system T protein 2 358 1.1E-120 T 14-10-2018 IPR006223 Glycine cleavage system T protein GO:0004047|GO:0006546 KEGG: 00260+2.1.2.10|KEGG: 00670+2.1.2.10|Reactome: R-HSA-6783984 Amico_1579 f65fa499bcfff6f852f23f5996428219 363 SUPERFAMILY SSF101790 272 363 1.55E-22 T 14-10-2018 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal Amico_1579 f65fa499bcfff6f852f23f5996428219 363 Gene3D G3DSA:3.30.1360.120 3 235 4.6E-91 T 14-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Amico_0041 0b7b7bf2e7ecc50ab12df1a757992d44 252 Gene3D G3DSA:3.40.50.300 1 251 2.7E-67 T 14-10-2018 Amico_0041 0b7b7bf2e7ecc50ab12df1a757992d44 252 Pfam PF00005 ABC transporter 20 176 5.4E-32 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0041 0b7b7bf2e7ecc50ab12df1a757992d44 252 SMART SM00382 29 227 4.1E-14 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0041 0b7b7bf2e7ecc50ab12df1a757992d44 252 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0041 0b7b7bf2e7ecc50ab12df1a757992d44 252 SUPERFAMILY SSF52540 4 238 1.54E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0333 216c0219b6f2c165819f2b476f160015 610 Pfam PF07715 TonB-dependent Receptor Plug Domain 46 156 2.9E-24 T 14-10-2018 IPR012910 TonB-dependent receptor, plug domain Amico_0333 216c0219b6f2c165819f2b476f160015 610 Gene3D G3DSA:2.40.170.20 180 610 9.0E-56 T 14-10-2018 IPR036942 TonB-dependent receptor-like, beta-barrel domain superfamily Amico_0333 216c0219b6f2c165819f2b476f160015 610 Gene3D G3DSA:2.170.130.10 45 165 9.8E-32 T 14-10-2018 IPR037066 TonB-dependent receptor, plug domain superfamily Amico_0333 216c0219b6f2c165819f2b476f160015 610 Pfam PF00593 TonB dependent receptor 178 609 3.5E-39 T 14-10-2018 IPR000531 TonB-dependent receptor-like, beta-barrel Amico_0333 216c0219b6f2c165819f2b476f160015 610 SUPERFAMILY SSF56935 37 610 3.89E-96 T 14-10-2018 Amico_1374 34f7b2d1c009871b77b22a0c9bf8d7e8 97 TIGRFAM TIGR00135 gatC: aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit 3 95 1.4E-24 T 14-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Amico_1374 34f7b2d1c009871b77b22a0c9bf8d7e8 97 Pfam PF02686 Glu-tRNAGln amidotransferase C subunit 19 90 2.5E-14 T 14-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Amico_1374 34f7b2d1c009871b77b22a0c9bf8d7e8 97 Gene3D G3DSA:1.10.20.60 1 93 1.4E-23 T 14-10-2018 Amico_1374 34f7b2d1c009871b77b22a0c9bf8d7e8 97 SUPERFAMILY SSF141000 3 93 9.55E-24 T 14-10-2018 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C GO:0006450 Amico_1374 34f7b2d1c009871b77b22a0c9bf8d7e8 97 Hamap MF_00122 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C [gatC]. 2 95 20.738 T 14-10-2018 IPR003837 Glu-tRNAGln amidotransferase C subunit GO:0006450 Amico_1305 81700bef3d5fa0aede0bafc1307d1e81 424 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 415 3.4E-116 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1305 81700bef3d5fa0aede0bafc1307d1e81 424 PIRSF PIRSF006066 1 424 9.7E-150 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1305 81700bef3d5fa0aede0bafc1307d1e81 424 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 420 2.1E-132 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0062 e170c2388d998766c681e9e26c647f04 126 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 32 43 7.2E-15 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Amico_0062 e170c2388d998766c681e9e26c647f04 126 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 45 60 7.2E-15 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Amico_0062 e170c2388d998766c681e9e26c647f04 126 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 13 28 7.2E-15 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Amico_0062 e170c2388d998766c681e9e26c647f04 126 PRINTS PR00778 Bacterial regulatory protein ArsR family signature 60 75 7.2E-15 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Amico_0062 e170c2388d998766c681e9e26c647f04 126 SUPERFAMILY SSF46785 5 89 2.43E-23 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0062 e170c2388d998766c681e9e26c647f04 126 Gene3D G3DSA:1.10.10.10 2 102 6.5E-27 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0062 e170c2388d998766c681e9e26c647f04 126 Pfam PF01022 Bacterial regulatory protein, arsR family 18 63 3.5E-12 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Amico_0062 e170c2388d998766c681e9e26c647f04 126 SMART SM00418 11 85 1.1E-26 T 14-10-2018 IPR001845 HTH ArsR-type DNA-binding domain GO:0003700|GO:0006355 Amico_1880 714eb0da09a041943f4c76d9f2592306 636 Gene3D G3DSA:2.120.10.30 14 255 2.4E-9 T 14-10-2018 IPR011042 Six-bladed beta-propeller, TolB-like Amico_1880 714eb0da09a041943f4c76d9f2592306 636 SUPERFAMILY SSF82171 45 374 2.75E-23 T 14-10-2018 Amico_1880 714eb0da09a041943f4c76d9f2592306 636 Gene3D G3DSA:3.40.50.1820 351 635 4.7E-80 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Amico_1880 714eb0da09a041943f4c76d9f2592306 636 SUPERFAMILY SSF53474 376 632 1.29E-70 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Amico_1880 714eb0da09a041943f4c76d9f2592306 636 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 489 509 1.2E-5 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Amico_1880 714eb0da09a041943f4c76d9f2592306 636 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 459 478 1.2E-5 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Amico_1880 714eb0da09a041943f4c76d9f2592306 636 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 565 587 1.2E-5 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Amico_1880 714eb0da09a041943f4c76d9f2592306 636 PRINTS PR00862 Prolyl oligopeptidase serine protease (S9A) signature 431 455 1.2E-5 T 14-10-2018 IPR002470 Peptidase S9A, prolyl oligopeptidase GO:0004252|GO:0006508 Amico_1880 714eb0da09a041943f4c76d9f2592306 636 Pfam PF00326 Prolyl oligopeptidase family 420 633 6.1E-45 T 14-10-2018 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain GO:0006508|GO:0008236 Amico_0681 bcdef52ee8c3be92800aaa9a80338403 189 SUPERFAMILY SSF54211 4 83 1.07E-20 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0681 bcdef52ee8c3be92800aaa9a80338403 189 Hamap MF_00076 Imidazoleglycerol-phosphate dehydratase [hisB]. 1 188 30.0 T 14-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Amico_0681 bcdef52ee8c3be92800aaa9a80338403 189 Gene3D G3DSA:3.30.230.40 87 188 3.6E-30 T 14-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 Amico_0681 bcdef52ee8c3be92800aaa9a80338403 189 Pfam PF00475 Imidazoleglycerol-phosphate dehydratase 31 171 9.7E-45 T 14-10-2018 IPR000807 Imidazoleglycerol-phosphate dehydratase GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Amico_0681 bcdef52ee8c3be92800aaa9a80338403 189 Gene3D G3DSA:3.30.230.40 2 85 1.1E-22 T 14-10-2018 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily KEGG: 00340+4.2.1.19 Amico_0681 bcdef52ee8c3be92800aaa9a80338403 189 SUPERFAMILY SSF54211 85 175 2.4E-24 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0681 bcdef52ee8c3be92800aaa9a80338403 189 ProSitePatterns PS00954 Imidazoleglycerol-phosphate dehydratase signature 1. 59 72 - T 14-10-2018 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site GO:0000105|GO:0004424 KEGG: 00340+4.2.1.19 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 PIRSF PIRSF036458 1 356 5.8E-153 T 14-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 Gene3D G3DSA:3.30.420.40 136 332 1.2E-148 T 14-10-2018 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 Hamap MF_00542 Probable butyrate kinase [buk]. 1 356 156.686 T 14-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 PRINTS PR00471 Acetate kinase family signature 297 313 2.1E-16 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 PRINTS PR00471 Acetate kinase family signature 178 199 2.1E-16 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 PRINTS PR00471 Acetate kinase family signature 274 287 2.1E-16 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 PRINTS PR00471 Acetate kinase family signature 3 14 2.1E-16 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 Gene3D G3DSA:3.30.420.40 2 355 1.2E-148 T 14-10-2018 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 Pfam PF00871 Acetokinase family 2 342 3.4E-62 T 14-10-2018 IPR000890 Aliphatic acid kinase, short-chain GO:0005622|GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 SUPERFAMILY SSF53067 1 171 3.15E-62 T 14-10-2018 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 ProSitePatterns PS01075 Acetate and butyrate kinases family signature 1. 3 14 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 ProSitePatterns PS01076 Acetate and butyrate kinases family signature 2. 178 195 - T 14-10-2018 IPR023865 Aliphatic acid kinase, short-chain, conserved site GO:0016301|GO:0016310|GO:0016774 KEGG: 00430+2.7.2.1|KEGG: 00620+2.7.2.1|KEGG: 00640+2.7.2.1|KEGG: 00680+2.7.2.1|KEGG: 00720+2.7.2.1|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 SUPERFAMILY SSF53067 147 348 7.69E-51 T 14-10-2018 Amico_1839 3b50a68a492bcf0ea1cd97122abc4e98 356 TIGRFAM TIGR02707 butyr_kinase: butyrate kinase 2 353 8.9E-153 T 14-10-2018 IPR011245 Butyrate kinase GO:0005524|GO:0005737|GO:0016310|GO:0047761 KEGG: 00650+2.7.2.7 Amico_1082 2690d58494be015029d1ba8e4b6079a2 411 SUPERFAMILY SSF52507 7 187 2.22E-51 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Amico_1082 2690d58494be015029d1ba8e4b6079a2 411 TIGRFAM TIGR00521 coaBC_dfp: phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase 9 401 4.3E-128 T 14-10-2018 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC GO:0004632|GO:0004633|GO:0010181|GO:0015937|GO:0015941 KEGG: 00770+4.1.1.36+6.3.2.5|MetaCyc: PWY-7851 Amico_1082 2690d58494be015029d1ba8e4b6079a2 411 SUPERFAMILY SSF102645 191 406 2.35E-71 T 14-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Amico_1082 2690d58494be015029d1ba8e4b6079a2 411 Pfam PF02441 Flavoprotein 12 184 3.6E-39 T 14-10-2018 IPR003382 Flavoprotein GO:0003824 Reactome: R-HSA-196783 Amico_1082 2690d58494be015029d1ba8e4b6079a2 411 Gene3D G3DSA:3.40.50.1950 5 191 2.3E-51 T 14-10-2018 IPR036551 Flavin prenyltransferase-like GO:0003824 Reactome: R-HSA-196783 Amico_1082 2690d58494be015029d1ba8e4b6079a2 411 Pfam PF04127 DNA / pantothenate metabolism flavoprotein 194 377 2.6E-69 T 14-10-2018 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Amico_1082 2690d58494be015029d1ba8e4b6079a2 411 Gene3D G3DSA:3.40.50.10300 192 411 9.5E-76 T 14-10-2018 IPR035929 CoaB-like superfamily KEGG: 00770+6.3.2.5|Reactome: R-HSA-196783 Amico_0155 39c4b7c5fcbcd185ac861159d9b54527 393 Gene3D G3DSA:3.40.50.2300 160 290 2.6E-91 T 14-10-2018 Amico_0155 39c4b7c5fcbcd185ac861159d9b54527 393 Gene3D G3DSA:3.40.50.2300 38 352 2.6E-91 T 14-10-2018 Amico_0155 39c4b7c5fcbcd185ac861159d9b54527 393 Pfam PF13458 Periplasmic binding protein 36 370 3.8E-60 T 14-10-2018 IPR028081 Leucine-binding protein domain Amico_0155 39c4b7c5fcbcd185ac861159d9b54527 393 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 59 75 1.6E-7 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Amico_0155 39c4b7c5fcbcd185ac861159d9b54527 393 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 294 307 1.6E-7 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Amico_0155 39c4b7c5fcbcd185ac861159d9b54527 393 PRINTS PR00337 Leu/Ile/Val-binding protein family signature 37 53 1.6E-7 T 14-10-2018 IPR000709 Leu/Ile/Val-binding protein GO:0006865 Amico_0155 39c4b7c5fcbcd185ac861159d9b54527 393 SUPERFAMILY SSF53822 36 374 2.83E-82 T 14-10-2018 IPR028082 Periplasmic binding protein-like I Amico_0224 419403ddc97204b5133ceb495fa18587 211 SUPERFAMILY SSF46785 137 189 6.3E-7 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0224 419403ddc97204b5133ceb495fa18587 211 Gene3D G3DSA:1.10.10.10 142 193 1.0E-5 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0224 419403ddc97204b5133ceb495fa18587 211 Pfam PF00072 Response regulator receiver domain 7 114 4.4E-17 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_0224 419403ddc97204b5133ceb495fa18587 211 Pfam PF09339 IclR helix-turn-helix domain 144 186 2.7E-5 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_0224 419403ddc97204b5133ceb495fa18587 211 Gene3D G3DSA:3.40.50.2300 4 141 4.3E-22 T 14-10-2018 Amico_0224 419403ddc97204b5133ceb495fa18587 211 SUPERFAMILY SSF52172 4 128 1.04E-22 T 14-10-2018 IPR011006 CheY-like superfamily Amico_0224 419403ddc97204b5133ceb495fa18587 211 SMART SM00448 3 114 5.8E-17 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_0514 72704859d06d77677cdafe199fa4f68d 188 Gene3D G3DSA:3.40.920.10 2 186 1.3E-51 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_0514 72704859d06d77677cdafe199fa4f68d 188 SUPERFAMILY SSF53323 4 179 3.92E-39 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_0514 72704859d06d77677cdafe199fa4f68d 188 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 12 174 3.0E-32 T 14-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Amico_0282 071d3624d3b5897c3e9a70c223da023b 233 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 11 215 2.8E-57 T 14-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Amico_0282 071d3624d3b5897c3e9a70c223da023b 233 Gene3D G3DSA:1.20.58.220 4 110 1.2E-34 T 14-10-2018 IPR038078 PhoU-like domain superfamily Amico_0282 071d3624d3b5897c3e9a70c223da023b 233 SUPERFAMILY SSF109755 5 218 1.78E-62 T 14-10-2018 Amico_0282 071d3624d3b5897c3e9a70c223da023b 233 Pfam PF01895 PhoU domain 119 205 1.8E-20 T 14-10-2018 IPR026022 PhoU domain Amico_0282 071d3624d3b5897c3e9a70c223da023b 233 Pfam PF01895 PhoU domain 17 102 3.4E-23 T 14-10-2018 IPR026022 PhoU domain Amico_0282 071d3624d3b5897c3e9a70c223da023b 233 Gene3D G3DSA:1.20.58.220 111 231 6.4E-38 T 14-10-2018 IPR038078 PhoU-like domain superfamily Amico_0282 071d3624d3b5897c3e9a70c223da023b 233 PIRSF PIRSF003107 1 220 5.8E-60 T 14-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Amico_0305 1097bb7f682e08421551507cab69e4a9 99 Gene3D G3DSA:3.30.70.120 1 99 5.0E-6 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Amico_0293 1ce38ad13cdfa3e774cc4214deaea08c 250 Pfam PF10646 Sporulation and spore germination 147 232 4.7E-9 T 14-10-2018 IPR019606 GerMN domain Amico_0293 1ce38ad13cdfa3e774cc4214deaea08c 250 SMART SM00909 154 238 8.9E-5 T 14-10-2018 IPR019606 GerMN domain Amico_1074 a21d9063f113b72954860aacb7f14e0f 169 Pfam PF03602 Conserved hypothetical protein 95 2 162 1.0E-32 T 14-10-2018 Amico_1074 a21d9063f113b72954860aacb7f14e0f 169 Gene3D G3DSA:3.40.50.150 1 168 3.8E-40 T 14-10-2018 Amico_1074 a21d9063f113b72954860aacb7f14e0f 169 PIRSF PIRSF004553 1 166 6.2E-38 T 14-10-2018 IPR004398 RNA methyltransferase, RsmD GO:0008168|GO:0031167 Amico_1074 a21d9063f113b72954860aacb7f14e0f 169 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 98 104 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Amico_1074 a21d9063f113b72954860aacb7f14e0f 169 SUPERFAMILY SSF53335 4 162 4.25E-35 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_1680 05072b416ec51b929589af9edf323322 283 Gene3D G3DSA:1.10.3720.10 57 281 5.9E-31 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1680 05072b416ec51b929589af9edf323322 283 SUPERFAMILY SSF161098 15 265 1.15E-35 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1680 05072b416ec51b929589af9edf323322 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 81 278 3.7E-24 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_1680 05072b416ec51b929589af9edf323322 283 TIGRFAM TIGR00974 3a0107s02c: phosphate ABC transporter, permease protein PstA 9 279 1.2E-82 T 14-10-2018 IPR005672 Phosphate transport system permease protein PstA GO:0005315|GO:0005887|GO:0035435 Amico_0138 e461acc0ce1e61eed3ef2c45900d64f9 451 Gene3D G3DSA:1.10.4100.10 30 418 1.5E-113 T 14-10-2018 Amico_0138 e461acc0ce1e61eed3ef2c45900d64f9 451 SUPERFAMILY SSF103378 7 447 4.58E-113 T 14-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Amico_0138 e461acc0ce1e61eed3ef2c45900d64f9 451 Gene3D G3DSA:3.30.1330.120 271 402 1.5E-113 T 14-10-2018 Amico_0138 e461acc0ce1e61eed3ef2c45900d64f9 451 Pfam PF03972 MmgE/PrpD family 10 434 4.9E-128 T 14-10-2018 IPR005656 MmgE/PrpD GO:0016829 Amico_1151 20470594ff5f5002bb6d131566d8c06b 375 Pfam PF13356 Arm DNA-binding domain 3 73 2.8E-8 T 14-10-2018 IPR025166 Integrase, DNA-binding domain Amico_1151 20470594ff5f5002bb6d131566d8c06b 375 Gene3D G3DSA:1.10.150.130 80 190 3.9E-26 T 14-10-2018 IPR010998 Integrase/recombinase, N-terminal Amico_1151 20470594ff5f5002bb6d131566d8c06b 375 SUPERFAMILY SSF56349 82 365 4.71E-63 T 14-10-2018 IPR011010 DNA breaking-rejoining enzyme, catalytic core GO:0003677 Amico_1151 20470594ff5f5002bb6d131566d8c06b 375 Pfam PF00589 Phage integrase family 193 355 1.4E-21 T 14-10-2018 IPR002104 Integrase, catalytic domain GO:0003677|GO:0006310|GO:0015074 Amico_1151 20470594ff5f5002bb6d131566d8c06b 375 Gene3D G3DSA:1.10.443.10 192 366 4.3E-19 T 14-10-2018 IPR013762 Integrase-like, catalytic domain superfamily GO:0003677|GO:0006310|GO:0015074 Amico_1151 20470594ff5f5002bb6d131566d8c06b 375 Gene3D G3DSA:3.30.160.390 1 79 4.5E-21 T 14-10-2018 IPR038488 Integrase, DNA-binding domain superfamily Amico_0409 9760a4bb26a10a10701e7d0594581b06 470 Pfam PF07730 Histidine kinase 252 316 1.9E-10 T 14-10-2018 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain GO:0000155|GO:0000160|GO:0016021|GO:0046983 Amico_0409 9760a4bb26a10a10701e7d0594581b06 470 SUPERFAMILY SSF55874 327 451 5.11E-16 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_0409 9760a4bb26a10a10701e7d0594581b06 470 Gene3D G3DSA:3.30.565.10 318 458 4.2E-26 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_0409 9760a4bb26a10a10701e7d0594581b06 470 Pfam PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 358 450 6.8E-8 T 14-10-2018 IPR003594 Histidine kinase/HSP90-like ATPase Amico_1278 6a2ef2b54f1afe4ede3ddc447e8883ca 619 Pfam PF11842 Domain of unknown function (DUF3362) 519 615 5.5E-37 T 14-10-2018 IPR024560 Uncharacterised protein family UPF0313, C-terminal Amico_1278 6a2ef2b54f1afe4ede3ddc447e8883ca 619 Pfam PF04055 Radical SAM superfamily 304 511 3.1E-16 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_1278 6a2ef2b54f1afe4ede3ddc447e8883ca 619 SMART SM00729 298 551 1.3E-6 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Amico_1278 6a2ef2b54f1afe4ede3ddc447e8883ca 619 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 302 322 - T 14-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Amico_1278 6a2ef2b54f1afe4ede3ddc447e8883ca 619 Pfam PF08497 Radical SAM N-terminal 5 301 4.6E-131 T 14-10-2018 IPR013704 Uncharacterised protein family UPF0313, N-terminal Amico_1278 6a2ef2b54f1afe4ede3ddc447e8883ca 619 Gene3D G3DSA:3.80.30.20 299 561 1.9E-13 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Amico_1278 6a2ef2b54f1afe4ede3ddc447e8883ca 619 TIGRFAM TIGR03904 SAM_YgiQ: uncharacterized radical SAM protein YgiQ 5 565 2.1E-261 T 14-10-2018 IPR022946 Uncharacterised protein family UPF0313 Amico_1278 6a2ef2b54f1afe4ede3ddc447e8883ca 619 SUPERFAMILY SSF102114 298 562 2.09E-14 T 14-10-2018 Amico_1278 6a2ef2b54f1afe4ede3ddc447e8883ca 619 Hamap MF_01251 UPF0313 protein YgiQ [ygiQ]. 5 566 52.258 T 14-10-2018 IPR022946 Uncharacterised protein family UPF0313 Amico_0303 26b59e7c7283e6d5011f7395aaba3568 363 Gene3D G3DSA:2.40.50.100 65 205 7.2E-65 T 14-10-2018 Amico_0303 26b59e7c7283e6d5011f7395aaba3568 363 Gene3D G3DSA:2.40.30.170 53 284 7.2E-65 T 14-10-2018 Amico_0303 26b59e7c7283e6d5011f7395aaba3568 363 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 52 278 7.2E-24 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Amico_0303 26b59e7c7283e6d5011f7395aaba3568 363 Gene3D G3DSA:1.10.287.470 104 172 7.2E-65 T 14-10-2018 Amico_0303 26b59e7c7283e6d5011f7395aaba3568 363 Gene3D G3DSA:2.40.420.20 42 345 7.2E-65 T 14-10-2018 Amico_0303 26b59e7c7283e6d5011f7395aaba3568 363 SUPERFAMILY SSF111369 54 285 1.57E-24 T 14-10-2018 Amico_0303 26b59e7c7283e6d5011f7395aaba3568 363 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 40 360 2.4E-64 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Amico_0063 dbb4b7e83f3d8254e746656e1c2e3b94 218 Gene3D G3DSA:3.40.50.300 4 218 6.0E-57 T 14-10-2018 Amico_0063 dbb4b7e83f3d8254e746656e1c2e3b94 218 Pfam PF00005 ABC transporter 23 167 6.9E-30 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0063 dbb4b7e83f3d8254e746656e1c2e3b94 218 SUPERFAMILY SSF52540 2 212 7.93E-50 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0063 dbb4b7e83f3d8254e746656e1c2e3b94 218 SMART SM00382 30 217 6.0E-10 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 Pfam PF13426 PAS domain 388 491 2.0E-11 T 14-10-2018 IPR000014 PAS domain Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 TIGRFAM TIGR00229 sensory_box: PAS domain S-box protein 375 499 1.3E-19 T 14-10-2018 IPR000014 PAS domain Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 SUPERFAMILY SSF109604 695 867 2.75E-38 T 14-10-2018 Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 Gene3D G3DSA:3.40.50.2300 89 299 1.0E-13 T 14-10-2018 Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 SUPERFAMILY SSF55785 367 491 7.5E-18 T 14-10-2018 IPR035965 PAS domain superfamily Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 SMART SM00091 378 445 1.4E-7 T 14-10-2018 IPR000014 PAS domain Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 Pfam PF01966 HD domain 706 827 7.1E-21 T 14-10-2018 IPR006674 HD domain Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 Gene3D G3DSA:3.30.450.20 373 528 4.6E-20 T 14-10-2018 Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 TIGRFAM TIGR00277 HDIG: HDIG domain 706 795 4.9E-10 T 14-10-2018 IPR006675 HDIG domain Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 Gene3D G3DSA:1.10.3210.10 682 872 1.2E-66 T 14-10-2018 Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 Gene3D G3DSA:3.40.50.2300 148 269 1.0E-13 T 14-10-2018 Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 Pfam PF04392 ABC transporter substrate binding protein 95 298 2.0E-6 T 14-10-2018 IPR007487 ABC transporter, substrate-binding protein Amico_1843 ac529fe9ddcdc097d2212221d0372607 884 SMART SM00471 701 836 1.6E-11 T 14-10-2018 IPR003607 HD/PDEase domain Amico_1602 555e1caf6c1598fdbf6c276f4c68dab7 185 Hamap MF_01219 Bifunctional protein PyrR [pyrR]. 6 179 36.548 T 14-10-2018 IPR023050 Bifunctional protein PyrR KEGG: 00240+2.4.2.9|MetaCyc: PWY-7183 Amico_1602 555e1caf6c1598fdbf6c276f4c68dab7 185 SUPERFAMILY SSF53271 8 172 9.83E-42 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Amico_1602 555e1caf6c1598fdbf6c276f4c68dab7 185 Gene3D G3DSA:3.40.50.2020 2 183 2.7E-58 T 14-10-2018 Amico_1602 555e1caf6c1598fdbf6c276f4c68dab7 185 Pfam PF00156 Phosphoribosyl transferase domain 10 150 3.0E-22 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Amico_0020 88ce10e4b1310a5e0e1876f2d1e1d447 189 SUPERFAMILY SSF46785 11 144 4.53E-29 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0020 88ce10e4b1310a5e0e1876f2d1e1d447 189 Gene3D G3DSA:1.10.10.10 10 91 5.6E-21 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0020 88ce10e4b1310a5e0e1876f2d1e1d447 189 Pfam PF01475 Ferric uptake regulator family 18 137 5.7E-25 T 14-10-2018 IPR002481 Ferric-uptake regulator GO:0003700|GO:0006355 Amico_0020 88ce10e4b1310a5e0e1876f2d1e1d447 189 Gene3D G3DSA:3.30.1490.190 92 149 3.5E-10 T 14-10-2018 Amico_1641 93d04256b54bd413fb1b1016993c78d0 207 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 60 172 2.7E-9 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Amico_1641 93d04256b54bd413fb1b1016993c78d0 207 Gene3D G3DSA:3.40.50.1000 5 193 4.1E-43 T 14-10-2018 IPR023214 HAD superfamily Amico_1641 93d04256b54bd413fb1b1016993c78d0 207 Gene3D G3DSA:1.10.150.240 17 77 4.1E-43 T 14-10-2018 IPR023198 Phosphoglycolate phosphatase-like, domain 2 Amico_1641 93d04256b54bd413fb1b1016993c78d0 207 SUPERFAMILY SSF56784 2 206 5.51E-49 T 14-10-2018 IPR036412 HAD-like superfamily Amico_1641 93d04256b54bd413fb1b1016993c78d0 207 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 140 160 2.9E-5 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Amico_1641 93d04256b54bd413fb1b1016993c78d0 207 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 2 13 2.9E-5 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Amico_1641 93d04256b54bd413fb1b1016993c78d0 207 PRINTS PR00413 Haloacid dehalogenase/epoxide hydrolase family signature 122 138 2.9E-5 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Amico_1641 93d04256b54bd413fb1b1016993c78d0 207 Pfam PF13419 Haloacid dehalogenase-like hydrolase 5 177 1.2E-37 T 14-10-2018 Amico_1624 e3fb56aebdeed560cf19c21299cc23b7 117 Pfam PF07883 Cupin domain 45 113 1.4E-17 T 14-10-2018 IPR013096 Cupin 2, conserved barrel Amico_1624 e3fb56aebdeed560cf19c21299cc23b7 117 SUPERFAMILY SSF51182 34 114 7.08E-20 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Amico_1624 e3fb56aebdeed560cf19c21299cc23b7 117 Gene3D G3DSA:2.60.120.10 1 116 4.5E-23 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Amico_0196 4c3eb5763c757dc3b72c09d2facae3c8 397 SUPERFAMILY SSF53187 9 395 2.23E-43 T 14-10-2018 Amico_0196 4c3eb5763c757dc3b72c09d2facae3c8 397 Pfam PF07687 Peptidase dimerisation domain 174 278 3.0E-12 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_0196 4c3eb5763c757dc3b72c09d2facae3c8 397 Gene3D G3DSA:3.40.630.10 15 381 3.2E-66 T 14-10-2018 Amico_0196 4c3eb5763c757dc3b72c09d2facae3c8 397 SUPERFAMILY SSF55031 176 288 2.54E-11 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_0196 4c3eb5763c757dc3b72c09d2facae3c8 397 Pfam PF01546 Peptidase family M20/M25/M40 70 392 1.7E-19 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_0196 4c3eb5763c757dc3b72c09d2facae3c8 397 Gene3D G3DSA:3.30.70.360 177 296 3.2E-66 T 14-10-2018 Amico_0426 9c7e715f8283b81fe326f9d2674f47b4 278 Hamap MF_02040 Iron-sulfur cluster carrier protein. 24 269 33.789 T 14-10-2018 IPR019591 Mrp/NBP35 ATP-binding protein Amico_0426 9c7e715f8283b81fe326f9d2674f47b4 278 SUPERFAMILY SSF52540 26 251 2.29E-52 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0426 9c7e715f8283b81fe326f9d2674f47b4 278 Pfam PF10609 NUBPL iron-transfer P-loop NTPase 29 259 1.5E-86 T 14-10-2018 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 Amico_0426 9c7e715f8283b81fe326f9d2674f47b4 278 Gene3D G3DSA:3.40.50.300 20 265 2.1E-75 T 14-10-2018 Amico_0049 32b9a25ecf701c827b0e203aba73c426 251 SMART SM00062 28 250 2.7E-45 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_0049 32b9a25ecf701c827b0e203aba73c426 251 SUPERFAMILY SSF53850 1 248 6.98E-58 T 14-10-2018 Amico_0049 32b9a25ecf701c827b0e203aba73c426 251 Gene3D G3DSA:3.40.190.10 114 208 1.4E-58 T 14-10-2018 Amico_0049 32b9a25ecf701c827b0e203aba73c426 251 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 30 248 5.7E-54 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_0049 32b9a25ecf701c827b0e203aba73c426 251 Gene3D G3DSA:3.40.190.10 30 248 1.4E-58 T 14-10-2018 Amico_1712 68e3593b7bb9eaafcb25d66dce85bcb2 418 SUPERFAMILY SSF57997 184 279 7.19E-5 T 14-10-2018 Amico_1712 68e3593b7bb9eaafcb25d66dce85bcb2 418 Pfam PF02706 Chain length determinant protein 16 111 6.0E-12 T 14-10-2018 IPR003856 Polysaccharide chain length determinant N-terminal domain GO:0009103|GO:0016020 Amico_1712 68e3593b7bb9eaafcb25d66dce85bcb2 418 Pfam PF13807 G-rich domain on putative tyrosine kinase 306 375 3.4E-13 T 14-10-2018 IPR032807 Tyrosine kinase, G-rich domain Amico_0678 e14d50228220c8c0af68c80ce75bad4c 254 TIGRFAM TIGR00735 hisF: imidazoleglycerol phosphate synthase, cyclase subunit 1 250 6.6E-100 T 14-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Amico_0678 e14d50228220c8c0af68c80ce75bad4c 254 Gene3D G3DSA:3.20.20.70 1 254 1.2E-98 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0678 e14d50228220c8c0af68c80ce75bad4c 254 Pfam PF00977 Histidine biosynthesis protein 5 233 6.7E-81 T 14-10-2018 IPR006062 Histidine biosynthesis GO:0000105 Amico_0678 e14d50228220c8c0af68c80ce75bad4c 254 Hamap MF_01013 Imidazole glycerol phosphate synthase subunit HisF [hisF]. 1 250 44.22 T 14-10-2018 IPR004651 Histidine biosynthesis, HisF GO:0000105|GO:0000107|GO:0005737 Amico_0678 e14d50228220c8c0af68c80ce75bad4c 254 SUPERFAMILY SSF51366 1 251 4.63E-80 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Amico_0329 4cc77c2fb26ce865b2866553afac8321 361 Pfam PF00730 HhH-GPD superfamily base excision DNA repair protein 30 147 1.4E-20 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Amico_0329 4cc77c2fb26ce865b2866553afac8321 361 ProSitePatterns PS01155 Endonuclease III family signature. 97 126 - T 14-10-2018 IPR004036 Endonuclease III-like, conserved site-2 Reactome: R-HSA-110357 Amico_0329 4cc77c2fb26ce865b2866553afac8321 361 SUPERFAMILY SSF55811 215 345 3.08E-16 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Amico_0329 4cc77c2fb26ce865b2866553afac8321 361 SMART SM00478 34 185 5.8E-37 T 14-10-2018 IPR003265 HhH-GPD domain GO:0006284 Reactome: R-HSA-110357 Amico_0329 4cc77c2fb26ce865b2866553afac8321 361 Gene3D G3DSA:1.10.1670.10 6 208 1.2E-80 T 14-10-2018 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal Reactome: R-HSA-110357 Amico_0329 4cc77c2fb26ce865b2866553afac8321 361 Gene3D G3DSA:1.10.340.30 16 127 1.2E-80 T 14-10-2018 Amico_0329 4cc77c2fb26ce865b2866553afac8321 361 ProSitePatterns PS00764 Endonuclease III iron-sulfur binding region signature. 187 203 - T 14-10-2018 IPR004035 Endonuclease III, iron-sulphur binding site Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Amico_0329 4cc77c2fb26ce865b2866553afac8321 361 SUPERFAMILY SSF48150 2 216 1.27E-69 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Amico_0329 4cc77c2fb26ce865b2866553afac8321 361 SMART SM00525 186 206 3.5E-4 T 14-10-2018 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif GO:0051539 Reactome: R-HSA-110357 Amico_0329 4cc77c2fb26ce865b2866553afac8321 361 Gene3D G3DSA:3.90.79.10 226 351 9.1E-16 T 14-10-2018 Amico_0329 4cc77c2fb26ce865b2866553afac8321 361 Pfam PF14815 NUDIX domain 231 342 3.7E-14 T 14-10-2018 IPR029119 MutY, C-terminal Reactome: R-HSA-110330|Reactome: R-HSA-110331|Reactome: R-HSA-110357 Amico_0329 4cc77c2fb26ce865b2866553afac8321 361 TIGRFAM TIGR01084 mutY: A/G-specific adenine glycosylase 3 265 1.0E-90 T 14-10-2018 IPR005760 A/G-specific adenine glycosylase MutY GO:0006284|GO:0019104 Amico_1234 dd00d4154a372e5b734915a4cd146408 318 TIGRFAM TIGR00345 GET3_arsA_TRC40: transport-energizing ATPase, TRC40/GET3/ArsA family 11 309 1.9E-88 T 14-10-2018 IPR016300 Arsenical pump ATPase, ArsA/GET3 GO:0005524|GO:0016887 Reactome: R-HSA-381038 Amico_1234 dd00d4154a372e5b734915a4cd146408 318 Pfam PF02374 Anion-transporting ATPase 8 312 1.9E-88 T 14-10-2018 IPR025723 Anion-transporting ATPase-like domain Reactome: R-HSA-381038 Amico_1234 dd00d4154a372e5b734915a4cd146408 318 Gene3D G3DSA:3.40.50.300 1 317 2.1E-86 T 14-10-2018 Amico_1234 dd00d4154a372e5b734915a4cd146408 318 SUPERFAMILY SSF52540 1 305 7.0E-47 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0363 3c03c986e3cc551f3af9c93f9f07f876 455 Gene3D G3DSA:3.40.50.300 220 383 1.5E-92 T 14-10-2018 Amico_0363 3c03c986e3cc551f3af9c93f9f07f876 455 Hamap MF_00379 tRNA modification GTPase MnmE [mnmE]. 4 455 30.363 T 14-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Amico_0363 3c03c986e3cc551f3af9c93f9f07f876 455 Pfam PF01926 50S ribosome-binding GTPase 221 333 4.8E-25 T 14-10-2018 IPR006073 GTP binding domain GO:0005525 Amico_0363 3c03c986e3cc551f3af9c93f9f07f876 455 TIGRFAM TIGR00450 mnmE_trmE_thdF: tRNA modification GTPase TrmE 11 455 4.5E-106 T 14-10-2018 IPR004520 tRNA modification GTPase MnmE GO:0003924|GO:0005525|GO:0005622|GO:0006400 Reactome: R-HSA-6787450 Amico_0363 3c03c986e3cc551f3af9c93f9f07f876 455 Gene3D G3DSA:3.30.1360.120 1 123 3.5E-41 T 14-10-2018 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 GO:0005515 Amico_0363 3c03c986e3cc551f3af9c93f9f07f876 455 Pfam PF10396 GTP-binding protein TrmE N-terminus 6 123 6.7E-36 T 14-10-2018 IPR018948 GTP-binding protein TrmE, N-terminal Reactome: R-HSA-6787450 Amico_0363 3c03c986e3cc551f3af9c93f9f07f876 455 Pfam PF12631 MnmE helical domain 126 452 1.9E-43 T 14-10-2018 IPR025867 MnmE, helical domain Reactome: R-HSA-6787450 Amico_0363 3c03c986e3cc551f3af9c93f9f07f876 455 TIGRFAM TIGR00231 small_GTP: small GTP-binding protein domain 219 372 5.5E-25 T 14-10-2018 IPR005225 Small GTP-binding protein domain GO:0005525 Amico_0363 3c03c986e3cc551f3af9c93f9f07f876 455 SUPERFAMILY SSF52540 77 373 1.27E-44 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0363 3c03c986e3cc551f3af9c93f9f07f876 455 Gene3D G3DSA:1.20.120.430 124 455 1.5E-92 T 14-10-2018 IPR027368 tRNA modification GTPase MnmE domain 2 Reactome: R-HSA-6787450 Amico_0032 f72ee5e4dbf976cdae2a179076ffcea8 283 Gene3D G3DSA:1.10.3720.10 84 278 1.9E-33 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0032 f72ee5e4dbf976cdae2a179076ffcea8 283 SUPERFAMILY SSF161098 87 271 6.8E-39 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0032 f72ee5e4dbf976cdae2a179076ffcea8 283 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 110 280 7.6E-25 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0599 e88de5bdf76594b29bf61edfcf0ac32e 215 Pfam PF00753 Metallo-beta-lactamase superfamily 14 191 9.5E-22 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0599 e88de5bdf76594b29bf61edfcf0ac32e 215 SUPERFAMILY SSF56281 6 214 1.44E-46 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_0599 e88de5bdf76594b29bf61edfcf0ac32e 215 Gene3D G3DSA:3.60.15.10 1 213 7.0E-59 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_0599 e88de5bdf76594b29bf61edfcf0ac32e 215 SMART SM00849 12 191 2.2E-28 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0528 a98e7f261ea1d647b16b0a77823efa76 371 Gene3D G3DSA:3.40.50.12780 3 313 1.1E-108 T 14-10-2018 Amico_0528 a98e7f261ea1d647b16b0a77823efa76 371 Pfam PF00501 AMP-binding enzyme 70 273 4.9E-14 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Amico_0528 a98e7f261ea1d647b16b0a77823efa76 371 Gene3D G3DSA:3.30.300.30 314 370 2.2E-12 T 14-10-2018 Amico_0528 a98e7f261ea1d647b16b0a77823efa76 371 SUPERFAMILY SSF56801 31 359 2.09E-53 T 14-10-2018 Amico_0528 a98e7f261ea1d647b16b0a77823efa76 371 Pfam PF14535 AMP-binding enzyme C-terminal domain 322 365 7.0E-8 T 14-10-2018 IPR028154 AMP-dependent ligase, C-terminal Amico_1581 fba11cf3e314ed378460790806fe67f1 448 SUPERFAMILY SSF53383 3 441 8.68E-114 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1581 fba11cf3e314ed378460790806fe67f1 448 Gene3D G3DSA:3.40.640.10 83 348 6.1E-162 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1581 fba11cf3e314ed378460790806fe67f1 448 PIRSF PIRSF006815 2 446 7.6E-188 T 14-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 Amico_1581 fba11cf3e314ed378460790806fe67f1 448 Hamap MF_00712 Probable glycine dehydrogenase (decarboxylating) subunit 1 [gcvPA]. 2 446 46.593 T 14-10-2018 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 GO:0004375|GO:0009116 KEGG: 00260+1.4.4.2 Amico_1581 fba11cf3e314ed378460790806fe67f1 448 Pfam PF02347 Glycine cleavage system P-protein 3 440 8.1E-140 T 14-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Amico_1581 fba11cf3e314ed378460790806fe67f1 448 Gene3D G3DSA:3.90.1150.10 72 441 6.1E-162 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0819 ddab7bd7fcfd960c40b29a0db3981bc4 362 SUPERFAMILY SSF53756 2 356 9.68E-56 T 14-10-2018 Amico_0819 ddab7bd7fcfd960c40b29a0db3981bc4 362 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 247 329 3.7E-14 T 14-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 Amico_0819 ddab7bd7fcfd960c40b29a0db3981bc4 362 Gene3D G3DSA:3.40.50.2000 1 182 2.8E-42 T 14-10-2018 Amico_0819 ddab7bd7fcfd960c40b29a0db3981bc4 362 Gene3D G3DSA:3.40.50.2000 188 339 2.7E-17 T 14-10-2018 Amico_0819 ddab7bd7fcfd960c40b29a0db3981bc4 362 Pfam PF03033 Glycosyltransferase family 28 N-terminal domain 5 141 7.4E-25 T 14-10-2018 IPR004276 Glycosyltransferase family 28, N-terminal domain GO:0005975|GO:0016758|GO:0030259 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_0930 84fef9ae21028ab559d26e7509a796b2 589 Pfam PF05872 Bacterial protein of unknown function (DUF853) 437 535 1.9E-6 T 14-10-2018 IPR033186 Helicase HerA-like C-terminal Amico_0930 84fef9ae21028ab559d26e7509a796b2 589 SUPERFAMILY SSF52540 132 555 1.28E-37 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0930 84fef9ae21028ab559d26e7509a796b2 589 Gene3D G3DSA:3.40.50.300 352 564 3.8E-47 T 14-10-2018 Amico_0930 84fef9ae21028ab559d26e7509a796b2 589 Gene3D G3DSA:3.40.50.300 118 229 1.6E-21 T 14-10-2018 Amico_0930 84fef9ae21028ab559d26e7509a796b2 589 Pfam PF01935 Domain of unknown function DUF87 133 417 2.9E-48 T 14-10-2018 IPR002789 Helicase HerA, central domain Amico_0840 a8e950aef7a89f42b941a2b2c335fc1b 119 SUPERFAMILY SSF81301 9 117 4.25E-29 T 14-10-2018 Amico_0840 a8e950aef7a89f42b941a2b2c335fc1b 119 Gene3D G3DSA:3.30.460.10 1 111 5.7E-29 T 14-10-2018 Amico_0840 a8e950aef7a89f42b941a2b2c335fc1b 119 Pfam PF02410 Ribosomal silencing factor during starvation 15 107 1.5E-22 T 14-10-2018 Amico_0840 a8e950aef7a89f42b941a2b2c335fc1b 119 TIGRFAM TIGR00090 rsfS_iojap_ybeB: ribosome silencing factor 14 107 4.1E-26 T 14-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Amico_0840 a8e950aef7a89f42b941a2b2c335fc1b 119 Hamap MF_01477 Ribosomal silencing factor RsfS [rsfS]. 2 108 20.664 T 14-10-2018 IPR004394 Protein Iojap/ribosomal silencing factor RsfS Amico_1586 fd08589fac6b2728d14dd8ef46ee86b2 433 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 14 421 9.6E-106 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1586 fd08589fac6b2728d14dd8ef46ee86b2 433 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 25 427 9.7E-125 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1586 fd08589fac6b2728d14dd8ef46ee86b2 433 PIRSF PIRSF006066 9 433 7.1E-135 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0875 c922e1ac18c4ff0695004d3755f2ff86 228 SUPERFAMILY SSF64005 4 219 9.02E-81 T 14-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 Amico_0875 c922e1ac18c4ff0695004d3755f2ff86 228 Hamap MF_01139 Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific) [uppS]. 2 225 38.786 T 14-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Amico_0875 c922e1ac18c4ff0695004d3755f2ff86 228 Pfam PF01255 Putative undecaprenyl diphosphate synthase 9 224 5.4E-80 T 14-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Amico_0875 c922e1ac18c4ff0695004d3755f2ff86 228 TIGRFAM TIGR00055 uppS: di-trans,poly-cis-decaprenylcistransferase 4 224 6.5E-81 T 14-10-2018 IPR001441 Decaprenyl diphosphate synthase-like GO:0016765 Reactome: R-HSA-446199 Amico_0875 c922e1ac18c4ff0695004d3755f2ff86 228 Gene3D G3DSA:3.40.1180.10 1 227 3.5E-91 T 14-10-2018 IPR036424 Decaprenyl diphosphate synthase-like superfamily GO:0016765 Reactome: R-HSA-446199 Amico_1856 9cd8574d4d16d520f8eefe82429172d0 537 Pfam PF07905 Purine catabolism regulatory protein-like family 8 126 6.9E-32 T 14-10-2018 IPR012914 Purine catabolism PurC-like domain Amico_1856 9cd8574d4d16d520f8eefe82429172d0 537 Gene3D G3DSA:1.10.10.2840 401 533 1.6E-16 T 14-10-2018 Amico_1856 9cd8574d4d16d520f8eefe82429172d0 537 Pfam PF13556 PucR C-terminal helix-turn-helix domain 470 528 4.8E-17 T 14-10-2018 IPR025736 PucR C-terminal helix-turn-helix domain Amico_1466 9f76db04ddd67534702171dc7dd97fba 267 Hamap MF_01006 Undecaprenyl-diphosphatase [uppP]. 1 264 14.682 T 14-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Amico_1466 9f76db04ddd67534702171dc7dd97fba 267 Pfam PF02673 Bacitracin resistance protein BacA 6 256 2.8E-68 T 14-10-2018 IPR003824 Undecaprenyl-diphosphatase UppP GO:0016020|GO:0016311|GO:0050380 KEGG: 00550+3.6.1.27|MetaCyc: PWY-5785 Amico_0101 8d915cd1f769f76b1673e077f229cb80 517 Pfam PF00682 HMGL-like 7 274 3.1E-95 T 14-10-2018 IPR000891 Pyruvate carboxyltransferase GO:0003824 Amico_0101 8d915cd1f769f76b1673e077f229cb80 517 TIGRFAM TIGR00973 leuA_bact: 2-isopropylmalate synthase 6 498 3.9E-204 T 14-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Amico_0101 8d915cd1f769f76b1673e077f229cb80 517 ProSitePatterns PS00816 Alpha-isopropylmalate and homocitrate synthases signature 2. 200 213 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Amico_0101 8d915cd1f769f76b1673e077f229cb80 517 SUPERFAMILY SSF110921 395 500 4.58E-23 T 14-10-2018 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Amico_0101 8d915cd1f769f76b1673e077f229cb80 517 Gene3D G3DSA:3.20.20.70 3 277 1.9E-106 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0101 8d915cd1f769f76b1673e077f229cb80 517 ProSitePatterns PS00815 Alpha-isopropylmalate and homocitrate synthases signature 1. 14 30 - T 14-10-2018 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site GO:0019752|GO:0046912 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Amico_0101 8d915cd1f769f76b1673e077f229cb80 517 Gene3D G3DSA:1.10.238.260 281 395 2.1E-36 T 14-10-2018 Amico_0101 8d915cd1f769f76b1673e077f229cb80 517 Gene3D G3DSA:3.30.160.270 396 502 8.0E-8 T 14-10-2018 Amico_0101 8d915cd1f769f76b1673e077f229cb80 517 Pfam PF08502 LeuA allosteric (dimerisation) domain 371 500 6.0E-32 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Amico_0101 8d915cd1f769f76b1673e077f229cb80 517 Hamap MF_01025 2-isopropylmalate synthase [leuA]. 4 510 40.373 T 14-10-2018 IPR005671 2-isopropylmalate synthase, bacterial-type GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Amico_0101 8d915cd1f769f76b1673e077f229cb80 517 SMART SM00917 370 501 1.4E-33 T 14-10-2018 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain GO:0003852|GO:0009098 KEGG: 00290+2.3.3.13|KEGG: 00620+2.3.3.13|MetaCyc: PWY-6871 Amico_0101 8d915cd1f769f76b1673e077f229cb80 517 SUPERFAMILY SSF51569 3 292 2.93E-95 T 14-10-2018 Amico_1025 d13253c8f58a0e47d8584fa89e03e6bb 319 TIGRFAM TIGR00174 miaA: tRNA dimethylallyltransferase 10 293 5.6E-82 T 14-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Amico_1025 d13253c8f58a0e47d8584fa89e03e6bb 319 Gene3D G3DSA:3.40.50.300 12 291 3.9E-89 T 14-10-2018 Amico_1025 d13253c8f58a0e47d8584fa89e03e6bb 319 Gene3D G3DSA:1.10.20.140 115 187 3.9E-89 T 14-10-2018 Amico_1025 d13253c8f58a0e47d8584fa89e03e6bb 319 SUPERFAMILY SSF52540 8 163 6.95E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1025 d13253c8f58a0e47d8584fa89e03e6bb 319 Pfam PF01715 IPP transferase 41 284 8.3E-68 T 14-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Amico_1025 d13253c8f58a0e47d8584fa89e03e6bb 319 Hamap MF_00185 tRNA dimethylallyltransferase [miaA]. 8 307 26.168 T 14-10-2018 IPR018022 IPP transferase GO:0008033 KEGG: 00908+2.5.1.75|MetaCyc: PWY-2781|Reactome: R-HSA-6782315|Reactome: R-HSA-6787450 Amico_0400 f0dd0b0c1d399f80cd4d35e17bd3a40f 172 SUPERFAMILY SSF47240 1 160 4.92E-59 T 14-10-2018 IPR009078 Ferritin-like superfamily Amico_0400 f0dd0b0c1d399f80cd4d35e17bd3a40f 172 Gene3D G3DSA:1.20.1260.10 1 171 2.2E-54 T 14-10-2018 IPR012347 Ferritin-like Amico_0400 f0dd0b0c1d399f80cd4d35e17bd3a40f 172 Pfam PF00210 Ferritin-like domain 8 142 2.3E-41 T 14-10-2018 IPR008331 Ferritin/DPS protein domain GO:0006879|GO:0008199 Amico_1028 7b5672dd3f1fa2c163be3534a9c04bb9 138 Pfam PF03652 Holliday junction resolvase 3 133 2.3E-37 T 14-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Amico_1028 7b5672dd3f1fa2c163be3534a9c04bb9 138 SMART SM00732 2 101 4.7E-20 T 14-10-2018 IPR006641 YqgF/RNase H-like domain GO:0006139 Amico_1028 7b5672dd3f1fa2c163be3534a9c04bb9 138 Hamap MF_00651 Putative pre-16S rRNA nuclease [yqgF]. 2 136 22.3 T 14-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Amico_1028 7b5672dd3f1fa2c163be3534a9c04bb9 138 SUPERFAMILY SSF53098 1 135 2.58E-34 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Amico_1028 7b5672dd3f1fa2c163be3534a9c04bb9 138 Gene3D G3DSA:3.30.420.140 1 137 1.3E-39 T 14-10-2018 IPR037027 YqgF/RNase H-like domain superfamily GO:0006139 Amico_1028 7b5672dd3f1fa2c163be3534a9c04bb9 138 TIGRFAM TIGR00250 RNAse_H_YqgF: putative transcription antitermination factor YqgF 5 133 3.2E-27 T 14-10-2018 IPR005227 Putative pre-16S rRNA nuclease GO:0006364 Amico_0893 41b0af695cad4765f361f6f6ace3e508 444 Gene3D G3DSA:3.90.190.20 304 442 2.6E-25 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Amico_0893 41b0af695cad4765f361f6f6ace3e508 444 SUPERFAMILY SSF53623 8 302 1.49E-80 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Amico_0893 41b0af695cad4765f361f6f6ace3e508 444 Gene3D G3DSA:3.40.1190.10 2 302 5.8E-88 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Amico_0893 41b0af695cad4765f361f6f6ace3e508 444 PIRSF PIRSF001563 2 442 4.3E-117 T 14-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Amico_0893 41b0af695cad4765f361f6f6ace3e508 444 TIGRFAM TIGR01499 folC: bifunctional protein FolC 26 434 9.5E-105 T 14-10-2018 IPR001645 Folylpolyglutamate synthetase GO:0004326|GO:0005524|GO:0009396 KEGG: 00790+6.3.2.17|MetaCyc: PWY-2161|Reactome: R-HSA-196757 Amico_0893 41b0af695cad4765f361f6f6ace3e508 444 Pfam PF08245 Mur ligase middle domain 48 277 3.9E-13 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Amico_0893 41b0af695cad4765f361f6f6ace3e508 444 SUPERFAMILY SSF53244 304 436 1.06E-19 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Amico_1120 04b504798503ad835cdafb1d5cb3d4c4 641 Pfam PF04586 Caudovirus prohead serine protease 77 177 5.0E-6 T 14-10-2018 IPR006433 Prohead protease Amico_1751 cd449fb01003e85a58305c4462dbf9d9 331 Gene3D G3DSA:3.40.190.170 25 326 4.5E-104 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1751 cd449fb01003e85a58305c4462dbf9d9 331 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 36 287 2.3E-77 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_1751 cd449fb01003e85a58305c4462dbf9d9 331 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 34 314 1.0E-90 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_1751 cd449fb01003e85a58305c4462dbf9d9 331 PIRSF PIRSF006470 1 330 9.4E-108 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_1549 9813a128ce6823d0cf4d16c052776d39 373 Pfam PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit 15 371 9.9E-144 T 14-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Amico_1549 9813a128ce6823d0cf4d16c052776d39 373 PIRSF PIRSF015658 3 373 3.8E-147 T 14-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Amico_1549 9813a128ce6823d0cf4d16c052776d39 373 TIGRFAM TIGR01109 Na_pump_decarbB: sodium ion-translocating decarboxylase, beta subunit 16 366 2.7E-125 T 14-10-2018 IPR005661 Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit GO:0006814|GO:0016829 KEGG: 00620+4.1.1.3 Amico_1390 3ee2e7c10dcb683f1bcd813eea041cd6 463 PRINTS PR00175 Sodium/alanine symporter signature 212 231 2.2E-51 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_1390 3ee2e7c10dcb683f1bcd813eea041cd6 463 PRINTS PR00175 Sodium/alanine symporter signature 422 442 2.2E-51 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_1390 3ee2e7c10dcb683f1bcd813eea041cd6 463 PRINTS PR00175 Sodium/alanine symporter signature 308 326 2.2E-51 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_1390 3ee2e7c10dcb683f1bcd813eea041cd6 463 PRINTS PR00175 Sodium/alanine symporter signature 354 376 2.2E-51 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_1390 3ee2e7c10dcb683f1bcd813eea041cd6 463 PRINTS PR00175 Sodium/alanine symporter signature 93 115 2.2E-51 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_1390 3ee2e7c10dcb683f1bcd813eea041cd6 463 PRINTS PR00175 Sodium/alanine symporter signature 184 202 2.2E-51 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_1390 3ee2e7c10dcb683f1bcd813eea041cd6 463 TIGRFAM TIGR00835 agcS: amino acid carrier protein 16 453 1.7E-136 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_1390 3ee2e7c10dcb683f1bcd813eea041cd6 463 Pfam PF01235 Sodium:alanine symporter family 56 460 1.2E-130 T 14-10-2018 IPR001463 Sodium:alanine symporter GO:0006814|GO:0015655|GO:0016020|GO:0032328 Amico_0922 50a7c9ddb919e0d3acba1f4a30cbc67e 296 SUPERFAMILY SSF46689 8 83 5.55E-16 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Amico_0922 50a7c9ddb919e0d3acba1f4a30cbc67e 296 Pfam PF01418 Helix-turn-helix domain, rpiR family 9 78 4.6E-10 T 14-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Amico_0922 50a7c9ddb919e0d3acba1f4a30cbc67e 296 Pfam PF01380 SIS domain 133 258 6.5E-10 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Amico_0922 50a7c9ddb919e0d3acba1f4a30cbc67e 296 Gene3D G3DSA:3.40.50.10490 99 283 4.3E-23 T 14-10-2018 Amico_0922 50a7c9ddb919e0d3acba1f4a30cbc67e 296 SUPERFAMILY SSF53697 101 264 2.2E-17 T 14-10-2018 Amico_0922 50a7c9ddb919e0d3acba1f4a30cbc67e 296 Gene3D G3DSA:1.10.10.10 4 82 7.8E-19 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0107 6ce88fb6a7204bfa5549941992462536 189 Pfam PF04205 FMN-binding domain 91 177 2.2E-20 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Amico_0107 6ce88fb6a7204bfa5549941992462536 189 PIRSF PIRSF006091 1 188 3.8E-44 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Amico_0107 6ce88fb6a7204bfa5549941992462536 189 SMART SM00900 91 180 2.8E-27 T 14-10-2018 IPR007329 FMN-binding GO:0010181|GO:0016020 Amico_0107 6ce88fb6a7204bfa5549941992462536 189 Hamap MF_00479 Ion-translocating oxidoreductase complex subunit G [rsxG]. 1 182 23.327 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Amico_0107 6ce88fb6a7204bfa5549941992462536 189 TIGRFAM TIGR01947 rnfG: electron transport complex, RnfABCDGE type, G subunit 8 181 1.9E-33 T 14-10-2018 IPR010209 Ion-translocating oxidoreductase complex, subunit RnfG/RsxG GO:0005886|GO:0009055|GO:0022900 Amico_1832 61e91041f2f62f915db2aa31adcfd7eb 340 PIRSF PIRSF006470 1 332 7.7E-93 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_1832 61e91041f2f62f915db2aa31adcfd7eb 340 Gene3D G3DSA:3.40.190.170 28 335 9.8E-99 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1832 61e91041f2f62f915db2aa31adcfd7eb 340 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 35 287 2.6E-65 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_1832 61e91041f2f62f915db2aa31adcfd7eb 340 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 34 314 6.6E-83 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_1816 36a1a661aa048bc59079b07ca4238075 452 Pfam PF01554 MatE 22 183 8.0E-31 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1816 36a1a661aa048bc59079b07ca4238075 452 Pfam PF01554 MatE 251 401 8.1E-24 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1816 36a1a661aa048bc59079b07ca4238075 452 TIGRFAM TIGR00797 matE: MATE efflux family protein 22 412 2.4E-64 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1816 36a1a661aa048bc59079b07ca4238075 452 PIRSF PIRSF006603 1 452 1.5E-100 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1870 05908443ea6f1e9efdccb2be32b7422d 223 Gene3D G3DSA:3.40.50.12740 7 220 4.4E-66 T 14-10-2018 Amico_1870 05908443ea6f1e9efdccb2be32b7422d 223 SMART SM00448 7 120 7.8E-30 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1870 05908443ea6f1e9efdccb2be32b7422d 223 ProSitePatterns PS00622 LuxR-type HTH domain signature. 174 201 - T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1870 05908443ea6f1e9efdccb2be32b7422d 223 Pfam PF00072 Response regulator receiver domain 9 121 2.5E-28 T 14-10-2018 IPR001789 Signal transduction response regulator, receiver domain GO:0000160 Amico_1870 05908443ea6f1e9efdccb2be32b7422d 223 Pfam PF00196 Bacterial regulatory proteins, luxR family 159 214 6.3E-22 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1870 05908443ea6f1e9efdccb2be32b7422d 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 160 174 3.5E-15 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1870 05908443ea6f1e9efdccb2be32b7422d 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 190 202 3.5E-15 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1870 05908443ea6f1e9efdccb2be32b7422d 223 PRINTS PR00038 LuxR bacterial regulatory protein HTH signature 174 190 3.5E-15 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1870 05908443ea6f1e9efdccb2be32b7422d 223 SMART SM00421 157 214 2.8E-24 T 14-10-2018 IPR000792 Transcription regulator LuxR, C-terminal GO:0006355 Amico_1870 05908443ea6f1e9efdccb2be32b7422d 223 SUPERFAMILY SSF52172 6 138 2.7E-33 T 14-10-2018 IPR011006 CheY-like superfamily Amico_1870 05908443ea6f1e9efdccb2be32b7422d 223 SUPERFAMILY SSF46894 153 220 4.42E-22 T 14-10-2018 IPR016032 Signal transduction response regulator, C-terminal effector GO:0003677|GO:0006355 Amico_1696 58e08a61be0441aa4a982929a847244c 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 409 424 2.2E-37 T 14-10-2018 Amico_1696 58e08a61be0441aa4a982929a847244c 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 44 69 2.2E-37 T 14-10-2018 Amico_1696 58e08a61be0441aa4a982929a847244c 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 131 150 2.2E-37 T 14-10-2018 Amico_1696 58e08a61be0441aa4a982929a847244c 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 264 283 2.2E-37 T 14-10-2018 Amico_1696 58e08a61be0441aa4a982929a847244c 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 433 450 2.2E-37 T 14-10-2018 Amico_1696 58e08a61be0441aa4a982929a847244c 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 354 372 2.2E-37 T 14-10-2018 Amico_1696 58e08a61be0441aa4a982929a847244c 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 378 396 2.2E-37 T 14-10-2018 Amico_1696 58e08a61be0441aa4a982929a847244c 534 PRINTS PR01210 Gamma-glutamyltranspeptidase signature 235 251 2.2E-37 T 14-10-2018 Amico_1696 58e08a61be0441aa4a982929a847244c 534 Gene3D G3DSA:1.10.246.130 251 354 3.9E-26 T 14-10-2018 Amico_1696 58e08a61be0441aa4a982929a847244c 534 Gene3D G3DSA:3.60.20.40 355 534 1.0E-70 T 14-10-2018 Amico_1696 58e08a61be0441aa4a982929a847244c 534 Pfam PF01019 Gamma-glutamyltranspeptidase 37 529 6.6E-152 T 14-10-2018 Amico_1696 58e08a61be0441aa4a982929a847244c 534 SUPERFAMILY SSF56235 4 534 1.06E-174 T 14-10-2018 IPR029055 Nucleophile aminohydrolases, N-terminal Amico_1752 c186a1833f81bbcd499562cd88a30fa3 391 SUPERFAMILY SSF53383 19 385 2.42E-113 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1752 c186a1833f81bbcd499562cd88a30fa3 391 Gene3D G3DSA:3.90.1150.10 29 379 6.8E-126 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1752 c186a1833f81bbcd499562cd88a30fa3 391 Gene3D G3DSA:3.40.640.10 66 285 6.8E-126 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1752 c186a1833f81bbcd499562cd88a30fa3 391 Pfam PF00155 Aminotransferase class I and II 37 379 4.8E-68 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_1752 c186a1833f81bbcd499562cd88a30fa3 391 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 235 248 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Amico_1356 a25a29bacea9f0ffc785732301fedcea 356 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 18 325 9.6E-35 T 14-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Amico_1356 a25a29bacea9f0ffc785732301fedcea 356 TIGRFAM TIGR00374 TIGR00374: TIGR00374 family protein 34 335 6.7E-27 T 14-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Amico_0549 2c94d60f9c51401298a35614dc528b8a 220 PIRSF PIRSF020269 9 220 1.4E-65 T 14-10-2018 IPR009501 Uncharacterised conserved protein UCP020269 Amico_0549 2c94d60f9c51401298a35614dc528b8a 220 Pfam PF02589 LUD domain 23 214 3.3E-42 T 14-10-2018 IPR003741 LUD domain Amico_0253 54ce11f3f9e52bac7915bd05fb9b3c0d 211 TIGRFAM TIGR00164 PS_decarb_rel: phosphatidylserine decarboxylase homolog 1 204 5.2E-59 T 14-10-2018 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 Amico_0253 54ce11f3f9e52bac7915bd05fb9b3c0d 211 Pfam PF02666 Phosphatidylserine decarboxylase 35 200 3.4E-32 T 14-10-2018 IPR003817 Phosphatidylserine decarboxylase-related GO:0004609|GO:0008654 KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669|Reactome: R-HSA-1483213 Amico_0253 54ce11f3f9e52bac7915bd05fb9b3c0d 211 Hamap MF_00664 Phosphatidylserine decarboxylase proenzyme [psd]. 1 204 32.486 T 14-10-2018 IPR033175 Phosphatidylserine decarboxylase, archaeal-type KEGG: 00564+4.1.1.65|MetaCyc: PWY-5669 Amico_1380 1cd7e1e6e92d942066d27d496626c77c 210 Gene3D G3DSA:1.10.150.310 156 210 1.3E-12 T 14-10-2018 Amico_1380 1cd7e1e6e92d942066d27d496626c77c 210 SMART SM00278 186 205 0.7 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Amico_1380 1cd7e1e6e92d942066d27d496626c77c 210 SMART SM00278 156 175 0.038 T 14-10-2018 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 GO:0003677|GO:0006281 Amico_1380 1cd7e1e6e92d942066d27d496626c77c 210 Gene3D G3DSA:3.10.560.10 57 155 4.2E-8 T 14-10-2018 Amico_1380 1cd7e1e6e92d942066d27d496626c77c 210 Pfam PF10531 SLBB domain 66 115 6.1E-11 T 14-10-2018 IPR019554 Soluble ligand binding domain Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1380 1cd7e1e6e92d942066d27d496626c77c 210 TIGRFAM TIGR00426 TIGR00426: competence protein ComEA helix-hairpin-helix repeat region 144 208 2.5E-21 T 14-10-2018 IPR004509 Competence protein ComEA, helix-hairpin-helix domain Amico_1380 1cd7e1e6e92d942066d27d496626c77c 210 Pfam PF12836 Helix-hairpin-helix motif 146 207 1.4E-22 T 14-10-2018 Amico_1380 1cd7e1e6e92d942066d27d496626c77c 210 SUPERFAMILY SSF47781 134 208 1.33E-27 T 14-10-2018 IPR010994 RuvA domain 2-like Amico_1504 5f9b4e4726851db9d984fe2a139c8af9 279 Gene3D G3DSA:3.30.1700.10 131 279 3.4E-51 T 14-10-2018 IPR011334 UDP-3-O-acyl N-acetylglucosamine deacetylase, C-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Amico_1504 5f9b4e4726851db9d984fe2a139c8af9 279 Hamap MF_00388 UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 2 276 37.699 T 14-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Amico_1504 5f9b4e4726851db9d984fe2a139c8af9 279 SUPERFAMILY SSF54211 5 119 3.19E-25 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_1504 5f9b4e4726851db9d984fe2a139c8af9 279 Pfam PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase 5 272 1.2E-82 T 14-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Amico_1504 5f9b4e4726851db9d984fe2a139c8af9 279 TIGRFAM TIGR00325 lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 5 271 9.4E-61 T 14-10-2018 IPR004463 UDP-3-O-acyl N-acetylglucosamine deacetylase GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Amico_1504 5f9b4e4726851db9d984fe2a139c8af9 279 Gene3D G3DSA:3.30.230.20 3 123 2.6E-28 T 14-10-2018 IPR015870 UDP-3-O-acyl N-acetylglucosamine deacetylase, N-terminal GO:0008759|GO:0009245 KEGG: 00540+3.5.1.108 Amico_1504 5f9b4e4726851db9d984fe2a139c8af9 279 SUPERFAMILY SSF54211 138 272 9.86E-41 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0182 45c0983e0a9db55667caffbd7131cd1b 393 Pfam PF07690 Major Facilitator Superfamily 20 353 3.6E-25 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Amico_0182 45c0983e0a9db55667caffbd7131cd1b 393 Gene3D G3DSA:1.20.1250.20 14 195 3.0E-19 T 14-10-2018 Amico_0182 45c0983e0a9db55667caffbd7131cd1b 393 Gene3D G3DSA:1.20.1250.20 206 391 1.9E-13 T 14-10-2018 Amico_0182 45c0983e0a9db55667caffbd7131cd1b 393 SUPERFAMILY SSF103473 16 386 1.96E-43 T 14-10-2018 IPR036259 MFS transporter superfamily Amico_1421 48cd166738f47894fcfda2d339d36ca1 163 TIGRFAM TIGR00621 ssb: single-stranded DNA-binding protein 2 129 3.0E-40 T 14-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Amico_1421 48cd166738f47894fcfda2d339d36ca1 163 Gene3D G3DSA:2.40.50.140 2 118 2.5E-41 T 14-10-2018 Amico_1421 48cd166738f47894fcfda2d339d36ca1 163 SUPERFAMILY SSF50249 3 163 1.96E-47 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_1421 48cd166738f47894fcfda2d339d36ca1 163 Pfam PF00436 Single-strand binding protein family 5 108 1.3E-34 T 14-10-2018 IPR000424 Primosome PriB/single-strand DNA-binding GO:0003697 Reactome: R-HSA-2151201 Amico_1421 48cd166738f47894fcfda2d339d36ca1 163 Hamap MF_00984 Single-stranded DNA-binding protein. 5 112 31.898 T 14-10-2018 IPR011344 Single-stranded DNA-binding protein GO:0003697|GO:0006260 Reactome: R-HSA-2151201 Amico_0248 59aae10f8959464c52362a9071cf7339 645 Gene3D G3DSA:3.40.50.2000 235 615 5.6E-130 T 14-10-2018 Amico_0248 59aae10f8959464c52362a9071cf7339 645 Pfam PF00534 Glycosyl transferases group 1 444 607 9.2E-16 T 14-10-2018 IPR001296 Glycosyl transferase, family 1 Amico_0248 59aae10f8959464c52362a9071cf7339 645 SUPERFAMILY SSF53756 260 626 2.16E-37 T 14-10-2018 Amico_0248 59aae10f8959464c52362a9071cf7339 645 Gene3D G3DSA:3.40.50.2000 420 614 5.6E-130 T 14-10-2018 Amico_0086 9a21bbc2e1edf436bc8b64cacf8a0817 274 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 4 263 41.237 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Amico_0086 9a21bbc2e1edf436bc8b64cacf8a0817 274 SUPERFAMILY SSF51621 3 263 3.68E-101 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Amico_0086 9a21bbc2e1edf436bc8b64cacf8a0817 274 Pfam PF02548 Ketopantoate hydroxymethyltransferase 3 259 9.8E-111 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Amico_0086 9a21bbc2e1edf436bc8b64cacf8a0817 274 Gene3D G3DSA:3.20.20.60 1 271 3.2E-116 T 14-10-2018 Amico_0086 9a21bbc2e1edf436bc8b64cacf8a0817 274 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 1 263 7.0E-95 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Amico_0086 9a21bbc2e1edf436bc8b64cacf8a0817 274 PIRSF PIRSF000388 1 265 3.9E-109 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Amico_1124 d3879c06d580440300895d13e37e932e 174 SUPERFAMILY SSF46955 15 59 9.34E-5 T 14-10-2018 IPR009061 Putative DNA-binding domain superfamily Amico_1303 009e794269b68e3b75a048c2386a43ad 391 Pfam PF00465 Iron-containing alcohol dehydrogenase 11 379 2.7E-100 T 14-10-2018 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA GO:0016491|GO:0046872|GO:0055114 Reactome: R-HSA-880009 Amico_1303 009e794269b68e3b75a048c2386a43ad 391 Gene3D G3DSA:3.40.50.1970 3 186 2.0E-51 T 14-10-2018 Amico_1303 009e794269b68e3b75a048c2386a43ad 391 Gene3D G3DSA:1.20.1090.10 187 390 4.7E-53 T 14-10-2018 Amico_1303 009e794269b68e3b75a048c2386a43ad 391 SUPERFAMILY SSF56796 7 387 9.68E-103 T 14-10-2018 Amico_1163 1212f31f096d78dbadc753dff3c0834e 83 ProDom PD010362 PHOSPHORIBOSYLFORMYLGLYCINAMIDINE PURS SYNTHETASE SYNTHASE COMPONENT SYNTHASE LIGASE FGAM UPF0062 I 12 76 2.0E-12 T 14-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 Amico_1163 1212f31f096d78dbadc753dff3c0834e 83 Gene3D G3DSA:3.30.1280.10 2 82 4.8E-25 T 14-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Amico_1163 1212f31f096d78dbadc753dff3c0834e 83 Pfam PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase 5 78 2.5E-25 T 14-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 Amico_1163 1212f31f096d78dbadc753dff3c0834e 83 SUPERFAMILY SSF82697 2 78 1.05E-23 T 14-10-2018 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277|Reactome: R-HSA-73817 Amico_1163 1212f31f096d78dbadc753dff3c0834e 83 Hamap MF_01926 Phosphoribosylformylglycinamidine synthase subunit PurS [purS]. 3 80 18.275 T 14-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 Amico_1163 1212f31f096d78dbadc753dff3c0834e 83 TIGRFAM TIGR00302 TIGR00302: phosphoribosylformylglycinamidine synthase, purS protein 3 78 1.5E-19 T 14-10-2018 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS KEGG: 00230+6.3.5.3|MetaCyc: PWY-6121|MetaCyc: PWY-6122|MetaCyc: PWY-6277 Amico_1610 1adc958a86e57a65ecacae21a81876d2 157 SUPERFAMILY SSF47240 7 144 4.06E-20 T 14-10-2018 IPR009078 Ferritin-like superfamily Amico_1610 1adc958a86e57a65ecacae21a81876d2 157 Gene3D G3DSA:1.20.1260.10 2 147 4.0E-29 T 14-10-2018 IPR012347 Ferritin-like Amico_1610 1adc958a86e57a65ecacae21a81876d2 157 Pfam PF02915 Rubrerythrin 10 142 7.7E-15 T 14-10-2018 IPR003251 Rubrerythrin GO:0016491|GO:0046872|GO:0055114 Amico_1866 c378aa93c27372ad392eabab380135ec 949 SUPERFAMILY SSF56935 371 624 2.75E-5 T 14-10-2018 Amico_1866 c378aa93c27372ad392eabab380135ec 949 SUPERFAMILY SSF49478 735 783 1.57E-5 T 14-10-2018 Amico_1020 30d6984e9d3b1374ca5844f652b6a03b 253 SUPERFAMILY SSF52540 15 209 1.26E-9 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1020 30d6984e9d3b1374ca5844f652b6a03b 253 Gene3D G3DSA:3.40.50.300 13 221 3.8E-7 T 14-10-2018 Amico_0391 b7c451836530ff07085a3953caec4d82 155 SUPERFAMILY SSF101307 11 141 5.62E-24 T 14-10-2018 IPR036681 PgpA-like superfamily GO:0006629|GO:0008962 Amico_0391 b7c451836530ff07085a3953caec4d82 155 PIRSF PIRSF006162 1 146 2.1E-32 T 14-10-2018 IPR026037 Phosphatidylglycerophosphatase A KEGG: 00564+3.1.3.27|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Amico_0391 b7c451836530ff07085a3953caec4d82 155 Pfam PF04608 Phosphatidylglycerophosphatase A 11 139 3.7E-33 T 14-10-2018 IPR007686 YutG/PgpA domain GO:0006629|GO:0008962 Amico_0154 5a12799b2d7145bd3f449b7a55b96de8 362 Gene3D G3DSA:3.40.50.10690 119 361 4.5E-88 T 14-10-2018 Amico_0154 5a12799b2d7145bd3f449b7a55b96de8 362 Gene3D G3DSA:2.40.420.10 17 95 1.5E-10 T 14-10-2018 Amico_0909 6c700a84a261a12fab7f4b31f220ce7e 560 Gene3D G3DSA:1.10.3720.10 16 283 1.6E-55 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0909 6c700a84a261a12fab7f4b31f220ce7e 560 Gene3D G3DSA:1.10.3720.10 299 549 7.1E-39 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0909 6c700a84a261a12fab7f4b31f220ce7e 560 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 75 277 4.8E-14 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0909 6c700a84a261a12fab7f4b31f220ce7e 560 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 370 549 3.4E-6 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0909 6c700a84a261a12fab7f4b31f220ce7e 560 SUPERFAMILY SSF161098 307 540 5.89E-40 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0909 6c700a84a261a12fab7f4b31f220ce7e 560 SUPERFAMILY SSF161098 19 273 4.77E-46 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0421 eaec5240dffe6821a70ca2216baf5b91 398 Pfam PF07907 YibE/F-like protein 147 384 1.8E-58 T 14-10-2018 IPR012507 YibE/F-like Amico_0974 bb9ea7de105d269eddb4e7794da6ebf8 92 SUPERFAMILY SSF64376 8 88 1.15E-27 T 14-10-2018 IPR035931 YlxR-like superfamily Amico_0974 bb9ea7de105d269eddb4e7794da6ebf8 92 Pfam PF04296 Protein of unknown function (DUF448) 10 83 3.0E-29 T 14-10-2018 IPR007393 Domain of unknown function DUF448 Amico_0974 bb9ea7de105d269eddb4e7794da6ebf8 92 Gene3D G3DSA:3.30.1230.10 1 92 9.2E-32 T 14-10-2018 IPR035931 YlxR-like superfamily Amico_1780 a149bd55baaeba3ebc5fc144200e30c1 260 Pfam PF00005 ABC transporter 22 176 2.5E-22 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1780 a149bd55baaeba3ebc5fc144200e30c1 260 Gene3D G3DSA:3.40.50.300 1 259 2.3E-77 T 14-10-2018 Amico_1780 a149bd55baaeba3ebc5fc144200e30c1 260 ProSitePatterns PS00211 ABC transporters family signature. 149 163 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1780 a149bd55baaeba3ebc5fc144200e30c1 260 SMART SM00382 30 252 2.1E-13 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_1780 a149bd55baaeba3ebc5fc144200e30c1 260 SUPERFAMILY SSF52540 1 247 1.05E-59 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0277 353661011b237922d69c8e6e000f8bc6 428 SUPERFAMILY SSF118215 17 418 2.48E-120 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Amico_0277 353661011b237922d69c8e6e000f8bc6 428 ProSitePatterns PS00713 Sodium:dicarboxylate symporter family signature 1. 44 59 - T 14-10-2018 IPR018107 Sodium:dicarboxylate symporter, conserved site Amico_0277 353661011b237922d69c8e6e000f8bc6 428 Pfam PF00375 Sodium:dicarboxylate symporter family 17 416 3.6E-124 T 14-10-2018 IPR001991 Sodium:dicarboxylate symporter GO:0015293|GO:0016021 Amico_0277 353661011b237922d69c8e6e000f8bc6 428 PRINTS PR00173 Glutamate-aspartate symporter signature 81 106 4.5E-49 T 14-10-2018 Amico_0277 353661011b237922d69c8e6e000f8bc6 428 PRINTS PR00173 Glutamate-aspartate symporter signature 201 220 4.5E-49 T 14-10-2018 Amico_0277 353661011b237922d69c8e6e000f8bc6 428 PRINTS PR00173 Glutamate-aspartate symporter signature 52 72 4.5E-49 T 14-10-2018 Amico_0277 353661011b237922d69c8e6e000f8bc6 428 PRINTS PR00173 Glutamate-aspartate symporter signature 11 31 4.5E-49 T 14-10-2018 Amico_0277 353661011b237922d69c8e6e000f8bc6 428 PRINTS PR00173 Glutamate-aspartate symporter signature 302 328 4.5E-49 T 14-10-2018 Amico_0277 353661011b237922d69c8e6e000f8bc6 428 PRINTS PR00173 Glutamate-aspartate symporter signature 364 384 4.5E-49 T 14-10-2018 Amico_0277 353661011b237922d69c8e6e000f8bc6 428 PRINTS PR00173 Glutamate-aspartate symporter signature 337 356 4.5E-49 T 14-10-2018 Amico_0277 353661011b237922d69c8e6e000f8bc6 428 Gene3D G3DSA:1.10.3860.10 5 428 8.1E-150 T 14-10-2018 IPR036458 Sodium:dicarboxylate symporter superfamily GO:0015293|GO:0016021 Amico_0359 092940860b62798e7dd4aee0b362a87a 348 Pfam PF02653 Branched-chain amino acid transport system / permease component 47 329 4.4E-18 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Amico_1593 073b06cc59d043059a702df526ff9658 169 SMART SM00506 4 133 3.1E-53 T 14-10-2018 IPR002589 Macro domain Amico_1593 073b06cc59d043059a702df526ff9658 169 Gene3D G3DSA:3.40.220.10 1 169 6.9E-81 T 14-10-2018 Amico_1593 073b06cc59d043059a702df526ff9658 169 Pfam PF01661 Macro domain 21 133 1.1E-45 T 14-10-2018 IPR002589 Macro domain Amico_1593 073b06cc59d043059a702df526ff9658 169 SUPERFAMILY SSF52949 2 168 2.52E-70 T 14-10-2018 Amico_0116 e888d1faf925c683f39135232f0c646c 164 Pfam PF01980 Uncharacterised protein family UPF0066 23 135 9.3E-39 T 14-10-2018 IPR023370 YaeB-like, N-terminal domain Amico_0116 e888d1faf925c683f39135232f0c646c 164 TIGRFAM TIGR00104 tRNA_TsaA: tRNA-Thr(GGU) m(6)t(6)A37 methyltransferase TsaA 5 137 7.8E-39 T 14-10-2018 IPR023370 YaeB-like, N-terminal domain Amico_0116 e888d1faf925c683f39135232f0c646c 164 SUPERFAMILY SSF118196 4 159 1.06E-52 T 14-10-2018 IPR036413 YaeB-like superfamily Amico_0116 e888d1faf925c683f39135232f0c646c 164 Gene3D G3DSA:2.40.30.70 7 152 2.1E-47 T 14-10-2018 IPR036414 YaeB, N-terminal domain superfamily Amico_1628 d02d8b278bf42b5ab1d082866142f347 538 Gene3D G3DSA:3.60.60.10 27 214 8.8E-7 T 14-10-2018 Amico_1628 d02d8b278bf42b5ab1d082866142f347 538 Pfam PF03577 Peptidase family C69 26 470 4.2E-62 T 14-10-2018 IPR005322 Peptidase C69, dipeptidase A GO:0006508|GO:0016805 Amico_1861 dd99417656c4d95a8a07cd709d48c46c 263 SUPERFAMILY SSF81345 3 262 7.72E-34 T 14-10-2018 IPR037294 ABC transporter, BtuC-like Amico_1861 dd99417656c4d95a8a07cd709d48c46c 263 Pfam PF00950 ABC 3 transport family 6 261 5.1E-69 T 14-10-2018 IPR001626 ABC transporter, TroCD-like GO:0005887|GO:0042626|GO:0043190|GO:0055085 Amico_1547 d400cf26ee045e3020ef98b74e4f0fa5 464 SUPERFAMILY SSF103365 6 464 1.44E-162 T 14-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Amico_1547 d400cf26ee045e3020ef98b74e4f0fa5 464 Gene3D G3DSA:3.90.1860.10 1 464 5.7E-184 T 14-10-2018 IPR036025 tRNA-splicing ligase RtcB-like superfamily GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Amico_1547 d400cf26ee045e3020ef98b74e4f0fa5 464 Pfam PF01139 tRNA-splicing ligase RtcB 47 464 1.0E-158 T 14-10-2018 IPR001233 tRNA-splicing ligase, RtcB GO:0006396|GO:0008452 Reactome: R-HSA-6784531 Amico_0500 ffb8c5df1c64553ef8f79dc6e0a1beba 213 Pfam PF00596 Class II Aldolase and Adducin N-terminal domain 9 183 8.4E-49 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal Amico_0500 ffb8c5df1c64553ef8f79dc6e0a1beba 213 Gene3D G3DSA:3.40.225.10 1 213 2.1E-75 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Amico_0500 ffb8c5df1c64553ef8f79dc6e0a1beba 213 SUPERFAMILY SSF53639 2 212 3.92E-66 T 14-10-2018 IPR036409 Class II aldolase/adducin N-terminal domain superfamily Amico_0500 ffb8c5df1c64553ef8f79dc6e0a1beba 213 SMART SM01007 8 184 3.9E-64 T 14-10-2018 IPR001303 Class II aldolase/adducin N-terminal Amico_0662 e25c698bad1c75dfec6dd21727cb2411 349 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 293 319 5.6E-54 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0662 e25c698bad1c75dfec6dd21727cb2411 349 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 180 200 5.6E-54 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0662 e25c698bad1c75dfec6dd21727cb2411 349 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 61 84 5.6E-54 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0662 e25c698bad1c75dfec6dd21727cb2411 349 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 125 144 5.6E-54 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0662 e25c698bad1c75dfec6dd21727cb2411 349 PRINTS PR01652 Bacterial cell shape determinant MreB/Mbl protein signature 41 59 5.6E-54 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0662 e25c698bad1c75dfec6dd21727cb2411 349 Gene3D G3DSA:3.90.640.10 179 252 3.1E-125 T 14-10-2018 Amico_0662 e25c698bad1c75dfec6dd21727cb2411 349 Pfam PF06723 MreB/Mbl protein 4 329 2.8E-140 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0662 e25c698bad1c75dfec6dd21727cb2411 349 Gene3D G3DSA:3.30.420.40 6 320 3.1E-125 T 14-10-2018 Amico_0662 e25c698bad1c75dfec6dd21727cb2411 349 Gene3D G3DSA:3.30.420.40 147 310 3.1E-125 T 14-10-2018 Amico_0662 e25c698bad1c75dfec6dd21727cb2411 349 SUPERFAMILY SSF53067 3 140 1.36E-39 T 14-10-2018 Amico_0662 e25c698bad1c75dfec6dd21727cb2411 349 TIGRFAM TIGR00904 mreB: cell shape determining protein, MreB/Mrl family 2 329 1.2E-139 T 14-10-2018 IPR004753 Cell shape determining protein MreB GO:0000902 Amico_0662 e25c698bad1c75dfec6dd21727cb2411 349 SUPERFAMILY SSF53067 142 326 2.37E-47 T 14-10-2018 Amico_0152 f007cc11dbc8e04b1f817295d705c55f 769 SUPERFAMILY SSF82861 496 579 2.35E-11 T 14-10-2018 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 GO:0016020 Amico_0152 f007cc11dbc8e04b1f817295d705c55f 769 SUPERFAMILY SSF50182 580 646 6.54E-18 T 14-10-2018 IPR010920 LSM domain superfamily Amico_0152 f007cc11dbc8e04b1f817295d705c55f 769 Gene3D G3DSA:2.30.30.60 596 645 3.0E-14 T 14-10-2018 IPR023408 Mechanosensitive ion channel MscS domain superfamily Amico_0152 f007cc11dbc8e04b1f817295d705c55f 769 Pfam PF00924 Mechanosensitive ion channel 540 738 3.0E-52 T 14-10-2018 IPR006685 Mechanosensitive ion channel MscS GO:0016020|GO:0055085 Amico_0152 f007cc11dbc8e04b1f817295d705c55f 769 SUPERFAMILY SSF82689 650 749 6.67E-24 T 14-10-2018 IPR011066 Mechanosensitive ion channel MscS, C-terminal GO:0016020 Amico_0152 f007cc11dbc8e04b1f817295d705c55f 769 ProSitePatterns PS01246 Uncharacterized protein family UPF0003 signature. 610 644 - T 14-10-2018 IPR006686 Mechanosensitive ion channel MscS, conserved site GO:0016020 Amico_0152 f007cc11dbc8e04b1f817295d705c55f 769 Gene3D G3DSA:3.30.70.100 648 743 2.1E-22 T 14-10-2018 Amico_0193 e5622875d188dbbeb92b308bf8e0324b 190 Pfam PF01613 Flavin reductase like domain 12 145 3.4E-22 T 14-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Amico_0193 e5622875d188dbbeb92b308bf8e0324b 190 SMART SM00903 9 153 1.2E-20 T 14-10-2018 IPR002563 Flavin reductase like domain GO:0010181 Amico_0193 e5622875d188dbbeb92b308bf8e0324b 190 Gene3D G3DSA:2.30.110.10 1 190 2.1E-63 T 14-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Amico_0193 e5622875d188dbbeb92b308bf8e0324b 190 SUPERFAMILY SSF50475 9 179 9.81E-45 T 14-10-2018 Amico_0913 b08d1a02039aaf186df7a8cde901067f 516 TIGRFAM TIGR00718 sda_alpha: L-serine dehydratase, iron-sulfur-dependent, alpha subunit 231 509 5.9E-79 T 14-10-2018 IPR004642 Serine dehydratase, alpha subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Amico_0913 b08d1a02039aaf186df7a8cde901067f 516 Pfam PF03313 Serine dehydratase alpha chain 244 502 1.9E-61 T 14-10-2018 IPR005130 Serine dehydratase-like, alpha subunit Amico_0913 b08d1a02039aaf186df7a8cde901067f 516 SUPERFAMILY SSF143548 19 140 3.92E-10 T 14-10-2018 IPR029009 Allosteric substrate binding domain superfamily Reactome: R-HSA-977347 Amico_1119 ed142c1061cf9ed58fa6336c97691e52 111 PIRSF PIRSF030771 1 111 3.0E-13 T 14-10-2018 IPR011231 Bacteriophage VT1-Sakai, H0018 Amico_1119 ed142c1061cf9ed58fa6336c97691e52 111 Pfam PF09956 Uncharacterized conserved protein (DUF2190) 6 110 3.5E-28 T 14-10-2018 IPR011231 Bacteriophage VT1-Sakai, H0018 Amico_0806 a4227a2b9e73b787f67b56888a231177 112 Gene3D G3DSA:3.40.50.10580 6 112 2.4E-22 T 14-10-2018 IPR036906 ATPase, V1 complex, subunit F superfamily GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0806 a4227a2b9e73b787f67b56888a231177 112 SUPERFAMILY SSF159468 9 109 7.46E-15 T 14-10-2018 IPR036906 ATPase, V1 complex, subunit F superfamily GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0806 a4227a2b9e73b787f67b56888a231177 112 Pfam PF01990 ATP synthase (F/14-kDa) subunit 9 100 2.6E-14 T 14-10-2018 IPR008218 ATPase, V1 complex, subunit F GO:0034220 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0108 ad3739d5122f6d3e8f637d2c1bf576d2 210 PIRSF PIRSF006102 1 206 8.6E-78 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Amico_0108 ad3739d5122f6d3e8f637d2c1bf576d2 210 Pfam PF02508 Rnf-Nqr subunit, membrane protein 5 187 1.9E-68 T 14-10-2018 IPR003667 NqrDE/RnfAE GO:0016020 Amico_0108 ad3739d5122f6d3e8f637d2c1bf576d2 210 TIGRFAM TIGR01948 rnfE: electron transport complex, RnfABCDGE type, E subunit 6 195 1.9E-82 T 14-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 Amico_0108 ad3739d5122f6d3e8f637d2c1bf576d2 210 Hamap MF_00478 Ion-translocating oxidoreductase complex subunit E [rsxE]. 1 197 27.465 T 14-10-2018 IPR010968 Ion-translocating oxidoreductase complex subunit E GO:0016020|GO:0022900 Amico_0427 eb6eb8470507b4aebc56270f9f5a6158 270 SUPERFAMILY SSF56281 12 246 7.08E-24 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_0427 eb6eb8470507b4aebc56270f9f5a6158 270 Gene3D G3DSA:3.60.15.10 1 268 1.2E-63 T 14-10-2018 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like Amico_0427 eb6eb8470507b4aebc56270f9f5a6158 270 SMART SM00849 20 237 8.5E-5 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0427 eb6eb8470507b4aebc56270f9f5a6158 270 Pfam PF00753 Metallo-beta-lactamase superfamily 22 83 5.1E-11 T 14-10-2018 IPR001279 Metallo-beta-lactamase Amico_0480 a2550c8a8c7633f6ca4a600bc6c89929 302 SUPERFAMILY SSF103481 53 153 9.15E-12 T 14-10-2018 Amico_0480 a2550c8a8c7633f6ca4a600bc6c89929 302 SUPERFAMILY SSF103481 203 295 2.35E-11 T 14-10-2018 Amico_0480 a2550c8a8c7633f6ca4a600bc6c89929 302 Pfam PF00892 EamA-like transporter family 162 295 5.6E-14 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_0480 a2550c8a8c7633f6ca4a600bc6c89929 302 Pfam PF00892 EamA-like transporter family 17 153 1.4E-15 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_1692 bda60ab9c987f53de2c43fa41f9e8f4c 451 Gene3D G3DSA:3.40.640.10 64 332 3.6E-153 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1692 bda60ab9c987f53de2c43fa41f9e8f4c 451 PIRSF PIRSF000521 12 135 3.8E-9 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Amico_1692 bda60ab9c987f53de2c43fa41f9e8f4c 451 PIRSF PIRSF000521 127 435 1.0E-33 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Amico_1692 bda60ab9c987f53de2c43fa41f9e8f4c 451 Gene3D G3DSA:3.90.1150.10 11 427 3.6E-153 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1692 bda60ab9c987f53de2c43fa41f9e8f4c 451 Pfam PF00202 Aminotransferase class-III 27 431 8.6E-114 T 14-10-2018 IPR005814 Aminotransferase class-III GO:0008483|GO:0030170 Amico_1692 bda60ab9c987f53de2c43fa41f9e8f4c 451 SUPERFAMILY SSF53383 19 434 3.25E-131 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1249 6a74c52e2a4ea6f6fc32700b7c517864 193 SUPERFAMILY SSF52499 7 192 1.83E-55 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Amico_1249 6a74c52e2a4ea6f6fc32700b7c517864 193 Pfam PF00857 Isochorismatase family 8 187 3.0E-42 T 14-10-2018 IPR000868 Isochorismatase-like GO:0003824 Amico_1249 6a74c52e2a4ea6f6fc32700b7c517864 193 Gene3D G3DSA:3.40.50.850 4 192 1.6E-66 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Amico_1699 0c47d8c6b185bbc1d378a16322fa2f4a 460 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 169 281 8.3E-6 T 14-10-2018 IPR005079 Peptidase C45 Amico_1699 0c47d8c6b185bbc1d378a16322fa2f4a 460 Gene3D G3DSA:3.60.60.10 125 301 7.1E-11 T 14-10-2018 Amico_0106 0b9bc072e68fe5ba8a707276739d8406 311 Pfam PF03116 NQR2, RnfD, RnfE family 8 308 1.4E-119 T 14-10-2018 IPR004338 Ion-translocating oxidoreductase NqrB/RnfD GO:0016020|GO:0055085 Amico_0106 0b9bc072e68fe5ba8a707276739d8406 311 Hamap MF_00462 Ion-translocating oxidoreductase complex subunit D [rsxD]. 6 310 25.463 T 14-10-2018 IPR011303 Ion-translocating oxidoreductase complex Rnf, subunit D GO:0016021|GO:0022900 Amico_1611 81873b09b18362a894652c9f2023018f 496 Gene3D G3DSA:3.30.300.310 394 495 1.3E-32 T 14-10-2018 Amico_1611 81873b09b18362a894652c9f2023018f 496 Gene3D G3DSA:3.40.50.12780 3 391 3.3E-83 T 14-10-2018 Amico_1611 81873b09b18362a894652c9f2023018f 496 Pfam PF13193 AMP-binding enzyme C-terminal domain 407 482 4.7E-19 T 14-10-2018 IPR025110 AMP-binding enzyme, C-terminal domain Amico_1611 81873b09b18362a894652c9f2023018f 496 SUPERFAMILY SSF56801 5 493 4.32E-122 T 14-10-2018 Amico_1611 81873b09b18362a894652c9f2023018f 496 ProSitePatterns PS00455 Putative AMP-binding domain signature. 151 162 - T 14-10-2018 IPR020845 AMP-binding, conserved site Amico_1611 81873b09b18362a894652c9f2023018f 496 Pfam PF00501 AMP-binding enzyme 13 398 4.7E-77 T 14-10-2018 IPR000873 AMP-dependent synthetase/ligase GO:0003824 Amico_0872 43a23e6dbf94a2493df0d4c9078876fd 345 SUPERFAMILY SSF50156 86 191 2.63E-15 T 14-10-2018 IPR036034 PDZ superfamily GO:0005515 Amico_0872 43a23e6dbf94a2493df0d4c9078876fd 345 TIGRFAM TIGR00054 TIGR00054: RIP metalloprotease RseP 127 343 2.6E-45 T 14-10-2018 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase GO:0004222|GO:0006508|GO:0016021 Amico_0872 43a23e6dbf94a2493df0d4c9078876fd 345 SMART SM00228 115 185 1.5E-4 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Amico_0872 43a23e6dbf94a2493df0d4c9078876fd 345 Pfam PF00595 PDZ domain (Also known as DHR or GLGF) 127 182 9.2E-8 T 14-10-2018 IPR001478 PDZ domain GO:0005515 Amico_0872 43a23e6dbf94a2493df0d4c9078876fd 345 Gene3D G3DSA:2.30.42.10 126 210 1.9E-14 T 14-10-2018 Amico_0872 43a23e6dbf94a2493df0d4c9078876fd 345 Pfam PF02163 Peptidase family M50 8 330 1.3E-64 T 14-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 Amico_0261 d68ab0d1c46b7e201bdc9c68000271d0 245 SUPERFAMILY SSF52540 1 232 9.8E-53 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0261 d68ab0d1c46b7e201bdc9c68000271d0 245 Pfam PF00005 ABC transporter 18 156 1.9E-22 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0261 d68ab0d1c46b7e201bdc9c68000271d0 245 SMART SM00382 26 206 1.0E-8 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0261 d68ab0d1c46b7e201bdc9c68000271d0 245 Gene3D G3DSA:3.40.50.300 1 242 2.3E-50 T 14-10-2018 Amico_1141 9b6b9f764a311aedee9934789307fce4 86 Gene3D G3DSA:1.10.260.40 1 65 4.8E-13 T 14-10-2018 Amico_1141 9b6b9f764a311aedee9934789307fce4 86 SMART SM00530 6 62 3.0E-6 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_1141 9b6b9f764a311aedee9934789307fce4 86 Pfam PF01381 Helix-turn-helix 7 62 9.3E-7 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_1141 9b6b9f764a311aedee9934789307fce4 86 SUPERFAMILY SSF47413 1 63 4.9E-12 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Amico_0440 6b9f224791c2be891e1ad429948fbd79 295 SUPERFAMILY SSF51621 2 291 3.81E-89 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Amico_0440 6b9f224791c2be891e1ad429948fbd79 295 Pfam PF13714 Phosphoenolpyruvate phosphomutase 7 255 5.7E-60 T 14-10-2018 Amico_0440 6b9f224791c2be891e1ad429948fbd79 295 Gene3D G3DSA:3.20.20.60 5 292 1.6E-98 T 14-10-2018 Amico_0054 c7ca8938e35c9dbcbb5aeb6f8c0a3f57 356 SUPERFAMILY SSF81345 14 353 5.75E-81 T 14-10-2018 IPR037294 ABC transporter, BtuC-like Amico_0054 c7ca8938e35c9dbcbb5aeb6f8c0a3f57 356 Gene3D G3DSA:1.10.3470.10 16 355 3.1E-101 T 14-10-2018 IPR037294 ABC transporter, BtuC-like Amico_0054 c7ca8938e35c9dbcbb5aeb6f8c0a3f57 356 Pfam PF01032 FecCD transport family 29 352 1.1E-89 T 14-10-2018 IPR000522 ABC transporter, permease protein, BtuC-like GO:0005215|GO:0016020 Amico_0249 02f99d040d5d36387bb14d3512230b58 513 Gene3D G3DSA:3.40.50.2000 30 469 1.3E-156 T 14-10-2018 Amico_0249 02f99d040d5d36387bb14d3512230b58 513 Gene3D G3DSA:3.40.50.2000 250 458 1.3E-156 T 14-10-2018 Amico_0249 02f99d040d5d36387bb14d3512230b58 513 SUPERFAMILY SSF53756 6 470 9.42E-135 T 14-10-2018 Amico_0249 02f99d040d5d36387bb14d3512230b58 513 Pfam PF00982 Glycosyltransferase family 20 6 472 7.6E-137 T 14-10-2018 IPR001830 Glycosyl transferase, family 20 GO:0003824|GO:0005992 KEGG: 00500+2.4.1.15 Amico_0778 356621b20dd7a2a76b9b901b74436359 192 Gene3D G3DSA:3.40.50.2020 2 186 9.0E-67 T 14-10-2018 Amico_0778 356621b20dd7a2a76b9b901b74436359 192 SUPERFAMILY SSF53271 5 175 1.31E-54 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Amico_0778 356621b20dd7a2a76b9b901b74436359 192 Pfam PF00156 Phosphoribosyl transferase domain 9 161 7.6E-31 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Amico_0778 356621b20dd7a2a76b9b901b74436359 192 TIGRFAM TIGR01203 HGPRTase: hypoxanthine phosphoribosyltransferase 8 174 1.1E-64 T 14-10-2018 IPR005904 Hypoxanthine phosphoribosyl transferase GO:0004422|GO:0005737|GO:0006166 KEGG: 00230+2.4.2.8|KEGG: 00983+2.4.2.8|MetaCyc: PWY-6599|MetaCyc: PWY-6609|MetaCyc: PWY-6610|MetaCyc: PWY-6620 Amico_1051 3ac90ff0f3e922309a80e95e6caf07dd 422 Pfam PF04468 PSP1 C-terminal conserved region 83 165 4.3E-25 T 14-10-2018 IPR007557 PSP1, C-terminal Amico_1876 aa245bfcfd3bd9a06480a2217048d58b 267 Pfam PF00795 Carbon-nitrogen hydrolase 4 248 4.4E-42 T 14-10-2018 IPR003010 Carbon-nitrogen hydrolase GO:0006807 Amico_1876 aa245bfcfd3bd9a06480a2217048d58b 267 SUPERFAMILY SSF56317 3 264 1.44E-68 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Amico_1876 aa245bfcfd3bd9a06480a2217048d58b 267 Gene3D G3DSA:3.60.110.10 1 263 1.3E-83 T 14-10-2018 IPR036526 Carbon-nitrogen hydrolase superfamily Amico_0504 60943bc617c8b8143cede635c52fd0ff 217 Pfam PF02589 LUD domain 19 210 5.8E-31 T 14-10-2018 IPR003741 LUD domain Amico_1677 04d2f4cdde98a5b5dadc261866984318 494 SMART SM00858 15 87 3.4E-12 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Amico_1677 04d2f4cdde98a5b5dadc261866984318 494 Gene3D G3DSA:3.90.1210.30 8 90 2.1E-25 T 14-10-2018 Amico_1677 04d2f4cdde98a5b5dadc261866984318 494 Pfam PF08666 SAF domain 15 87 1.3E-11 T 14-10-2018 IPR013974 SAF domain Reactome: R-HSA-4085001 Amico_1677 04d2f4cdde98a5b5dadc261866984318 494 Pfam PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus 113 492 1.3E-134 T 14-10-2018 IPR007392 D-galactarate/Altronate dehydratase, C-terminal GO:0016829 Amico_0434 f60b0e1614582ac6ab6ad3d04703174b 271 ProSitePatterns PS01005 Formate and nitrite transporters signature 1. 74 83 - T 14-10-2018 IPR024002 Formate/nitrite transporter, conserved site Amico_0434 f60b0e1614582ac6ab6ad3d04703174b 271 Pfam PF01226 Formate/nitrite transporter 8 261 4.4E-77 T 14-10-2018 IPR000292 Formate/nitrite transporter GO:0016020|GO:0022857|GO:0055085 Amico_0434 f60b0e1614582ac6ab6ad3d04703174b 271 Gene3D G3DSA:1.20.1080.10 2 271 6.3E-86 T 14-10-2018 IPR023271 Aquaporin-like Reactome: R-HSA-432047 Amico_1848 0c3a1d840dd6ae3c0d3e70ea38fc92e3 206 Gene3D G3DSA:3.30.230.30 1 132 3.8E-47 T 14-10-2018 IPR036956 Impact, N-terminal domain superfamily Amico_1848 0c3a1d840dd6ae3c0d3e70ea38fc92e3 206 ProSitePatterns PS00910 Uncharacterized protein family UPF0029 signature. 80 109 - T 14-10-2018 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site Amico_1848 0c3a1d840dd6ae3c0d3e70ea38fc92e3 206 SUPERFAMILY SSF54211 7 130 7.59E-41 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_1848 0c3a1d840dd6ae3c0d3e70ea38fc92e3 206 Pfam PF01205 Uncharacterized protein family UPF0029 20 125 9.9E-31 T 14-10-2018 IPR001498 Impact, N-terminal Amico_0420 f1d74d59b37be55ed96a994912745eed 309 Gene3D G3DSA:1.20.1530.20 151 309 5.6E-6 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily Amico_0420 f1d74d59b37be55ed96a994912745eed 309 Pfam PF03547 Membrane transport protein 158 302 1.0E-15 T 14-10-2018 IPR004776 Membrane transport protein GO:0016021|GO:0055085 Amico_1404 32397e157f18f79d617628ad89bbfc90 262 Pfam PF13277 YmdB-like protein 4 253 9.6E-105 T 14-10-2018 IPR005235 Metallophosphoesterase, YmdB-like Amico_1404 32397e157f18f79d617628ad89bbfc90 262 SUPERFAMILY SSF56300 1 253 5.55E-85 T 14-10-2018 Amico_1404 32397e157f18f79d617628ad89bbfc90 262 TIGRFAM TIGR00282 TIGR00282: metallophosphoesterase, MG_246/BB_0505 family 1 255 7.0E-87 T 14-10-2018 IPR005235 Metallophosphoesterase, YmdB-like Amico_1404 32397e157f18f79d617628ad89bbfc90 262 PIRSF PIRSF004789 1 262 5.8E-97 T 14-10-2018 IPR005235 Metallophosphoesterase, YmdB-like Amico_1404 32397e157f18f79d617628ad89bbfc90 262 Gene3D G3DSA:3.60.21.10 1 260 6.1E-110 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Amico_0312 06abee487bc943a4b29f2d0ac6a4e5e2 49 Hamap MF_00294 50S ribosomal protein L33 [rpmG]. 1 49 16.609 T 14-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0312 06abee487bc943a4b29f2d0ac6a4e5e2 49 Pfam PF00471 Ribosomal protein L33 4 49 8.2E-22 T 14-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0312 06abee487bc943a4b29f2d0ac6a4e5e2 49 SUPERFAMILY SSF57829 2 49 1.56E-17 T 14-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 Amico_0312 06abee487bc943a4b29f2d0ac6a4e5e2 49 Gene3D G3DSA:2.20.28.120 2 49 1.5E-20 T 14-10-2018 IPR038584 Ribosomal protein L33 superfamily Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0312 06abee487bc943a4b29f2d0ac6a4e5e2 49 TIGRFAM TIGR01023 rpmG_bact: ribosomal protein bL33 4 49 2.5E-19 T 14-10-2018 IPR001705 Ribosomal protein L33 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1144 587618dc605bc9027a6e221bee44aaf9 91 Gene3D G3DSA:2.10.109.10 1 86 1.0E-9 T 14-10-2018 Amico_1144 587618dc605bc9027a6e221bee44aaf9 91 SUPERFAMILY SSF51306 1 82 7.67E-11 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Amico_0199 b364b1149c14057ac67857d40bc34bb8 360 Gene3D G3DSA:3.40.190.170 40 352 1.1E-71 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_0199 b364b1149c14057ac67857d40bc34bb8 360 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 44 318 6.3E-53 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_0199 b364b1149c14057ac67857d40bc34bb8 360 SUPERFAMILY SSF53850 54 269 3.76E-6 T 14-10-2018 Amico_1523 c135c2e4240922e155a0e8dac47c3902 368 TIGRFAM TIGR00732 dprA: DNA protecting protein DprA 73 285 2.8E-65 T 14-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 Amico_1523 c135c2e4240922e155a0e8dac47c3902 368 Pfam PF02481 DNA recombination-mediator protein A 72 274 2.8E-66 T 14-10-2018 IPR003488 DNA recombination-mediator protein A GO:0009294 Amico_1523 c135c2e4240922e155a0e8dac47c3902 368 Gene3D G3DSA:3.40.50.450 2 287 4.8E-81 T 14-10-2018 Amico_1523 c135c2e4240922e155a0e8dac47c3902 368 SUPERFAMILY SSF102405 80 272 9.55E-34 T 14-10-2018 Amico_1872 526e66d63ccc92067d21054890ac1062 280 SUPERFAMILY SSF53697 103 273 1.6E-22 T 14-10-2018 Amico_1872 526e66d63ccc92067d21054890ac1062 280 Gene3D G3DSA:1.10.10.10 1 74 3.1E-20 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1872 526e66d63ccc92067d21054890ac1062 280 Pfam PF01418 Helix-turn-helix domain, rpiR family 3 70 3.0E-14 T 14-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Amico_1872 526e66d63ccc92067d21054890ac1062 280 SUPERFAMILY SSF46689 3 75 7.35E-17 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Amico_1872 526e66d63ccc92067d21054890ac1062 280 Gene3D G3DSA:3.40.50.10490 91 274 4.1E-27 T 14-10-2018 Amico_1872 526e66d63ccc92067d21054890ac1062 280 Pfam PF01380 SIS domain 127 247 1.3E-16 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Amico_0767 47b98488f2ca1caf576962790de4e0e9 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 162 190 1.2E-9 T 14-10-2018 IPR003004 GspF/PilC family Amico_0767 47b98488f2ca1caf576962790de4e0e9 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 64 76 1.2E-9 T 14-10-2018 IPR003004 GspF/PilC family Amico_0767 47b98488f2ca1caf576962790de4e0e9 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 358 372 1.2E-9 T 14-10-2018 IPR003004 GspF/PilC family Amico_0767 47b98488f2ca1caf576962790de4e0e9 396 PRINTS PR00812 Bacterial general secretion pathway protein F signature 374 393 1.2E-9 T 14-10-2018 IPR003004 GspF/PilC family Amico_0767 47b98488f2ca1caf576962790de4e0e9 396 ProSitePatterns PS00874 Bacterial type II secretion system protein F signature. 162 190 - T 14-10-2018 IPR001992 Type II secretion system conserved site GO:0009306|GO:0016020 Amico_0767 47b98488f2ca1caf576962790de4e0e9 396 Gene3D G3DSA:1.20.81.30 249 361 3.1E-19 T 14-10-2018 Amico_0767 47b98488f2ca1caf576962790de4e0e9 396 Gene3D G3DSA:1.20.81.30 55 169 3.0E-22 T 14-10-2018 Amico_0767 47b98488f2ca1caf576962790de4e0e9 396 Pfam PF00482 Type II secretion system (T2SS), protein F 68 190 9.0E-20 T 14-10-2018 IPR018076 Type II secretion system F domain Amico_0767 47b98488f2ca1caf576962790de4e0e9 396 Pfam PF00482 Type II secretion system (T2SS), protein F 264 383 3.1E-20 T 14-10-2018 IPR018076 Type II secretion system F domain Amico_1346 36e46cea071ab78cdc1f6e6e09627a5e 202 SUPERFAMILY SSF46689 9 80 5.34E-15 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Amico_1346 36e46cea071ab78cdc1f6e6e09627a5e 202 Pfam PF08359 YsiA-like protein, C-terminal region 70 192 1.8E-4 T 14-10-2018 IPR013570 Transcription regulator YsiA, C-terminal Amico_1346 36e46cea071ab78cdc1f6e6e09627a5e 202 Pfam PF00440 Bacterial regulatory proteins, tetR family 19 63 1.1E-10 T 14-10-2018 IPR001647 DNA-binding HTH domain, TetR-type GO:0003677 Amico_1346 36e46cea071ab78cdc1f6e6e09627a5e 202 Gene3D G3DSA:1.10.357.10 7 196 3.1E-44 T 14-10-2018 Amico_1346 36e46cea071ab78cdc1f6e6e09627a5e 202 SUPERFAMILY SSF48498 84 199 1.72E-20 T 14-10-2018 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily Amico_0098 cfef15055904bedb0faadcd84f611703 377 Gene3D G3DSA:3.40.718.10 2 377 5.9E-108 T 14-10-2018 Amico_0098 cfef15055904bedb0faadcd84f611703 377 SUPERFAMILY SSF53659 4 376 2.52E-95 T 14-10-2018 Amico_0098 cfef15055904bedb0faadcd84f611703 377 SMART SM01329 7 372 7.6E-124 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Amico_0098 cfef15055904bedb0faadcd84f611703 377 ProSitePatterns PS00470 Isocitrate and isopropylmalate dehydrogenases signature. 266 285 - T 14-10-2018 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site GO:0000287|GO:0016616|GO:0051287|GO:0055114 Reactome: R-HSA-71403 Amico_0098 cfef15055904bedb0faadcd84f611703 377 Pfam PF00180 Isocitrate/isopropylmalate dehydrogenase 8 349 2.6E-80 T 14-10-2018 IPR024084 Isopropylmalate dehydrogenase-like domain GO:0016616|GO:0055114 Reactome: R-HSA-71403 Amico_0233 2fcca31a1ef79550732206dece3b3f2f 577 Gene3D G3DSA:3.40.50.2000 305 572 1.4E-40 T 14-10-2018 Amico_0233 2fcca31a1ef79550732206dece3b3f2f 577 SUPERFAMILY SSF53756 20 574 1.57E-151 T 14-10-2018 Amico_0233 2fcca31a1ef79550732206dece3b3f2f 577 Pfam PF00343 Carbohydrate phosphorylase 251 490 2.7E-19 T 14-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Amico_0233 2fcca31a1ef79550732206dece3b3f2f 577 Pfam PF00343 Carbohydrate phosphorylase 44 100 1.4E-8 T 14-10-2018 IPR000811 Glycosyl transferase, family 35 GO:0005975|GO:0008184 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238|Reactome: R-HSA-70221 Amico_0233 2fcca31a1ef79550732206dece3b3f2f 577 Gene3D G3DSA:3.40.50.2000 9 144 6.5E-13 T 14-10-2018 Amico_0233 2fcca31a1ef79550732206dece3b3f2f 577 TIGRFAM TIGR02094 more_P_ylases: alpha-glucan phosphorylases 26 570 1.8E-162 T 14-10-2018 IPR011834 Alpha-glucan phosphorylase GO:0004645|GO:0005975|GO:0030170 KEGG: 00500+2.4.1.1|MetaCyc: PWY-5941|MetaCyc: PWY-6731|MetaCyc: PWY-6737|MetaCyc: PWY-7238 Amico_1897 2030e24da787e3d12a4634005f61af28 66 Pfam PF00403 Heavy-metal-associated domain 5 60 1.5E-15 T 14-10-2018 IPR006121 Heavy metal-associated domain, HMA GO:0030001|GO:0046872 Amico_1897 2030e24da787e3d12a4634005f61af28 66 Gene3D G3DSA:3.30.70.100 2 65 2.2E-19 T 14-10-2018 Amico_1897 2030e24da787e3d12a4634005f61af28 66 ProSitePatterns PS01047 Heavy-metal-associated domain. 8 36 - T 14-10-2018 IPR017969 Heavy-metal-associated, conserved site GO:0030001|GO:0046872 Amico_1897 2030e24da787e3d12a4634005f61af28 66 SUPERFAMILY SSF55008 2 64 8.64E-15 T 14-10-2018 IPR036163 Heavy metal-associated domain superfamily GO:0030001|GO:0046872 Amico_0135 3282ad1901e58a3b911249db8fe571d1 195 Pfam PF05683 Fumarase C-terminus 9 181 3.2E-39 T 14-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Amico_0135 3282ad1901e58a3b911249db8fe571d1 195 SUPERFAMILY SSF117457 5 180 3.53E-52 T 14-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 Amico_0135 3282ad1901e58a3b911249db8fe571d1 195 Gene3D G3DSA:3.20.130.10 1 181 9.8E-64 T 14-10-2018 IPR036660 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain superfamily GO:0016836 Amico_0135 3282ad1901e58a3b911249db8fe571d1 195 TIGRFAM TIGR00723 ttdB_fumA_fumB: hydrolyase, tartrate beta subunit/fumarate domain protein, Fe-S type 13 181 4.7E-59 T 14-10-2018 IPR004647 Fe-S hydro-lyase, tartrate dehydratase beta-type, catalytic domain GO:0016836 Amico_1091 d4138936e3716ca43593a1619aabf1bc 180 Gene3D G3DSA:1.10.10.10 82 179 1.7E-36 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1091 d4138936e3716ca43593a1619aabf1bc 180 SUPERFAMILY SSF46785 5 76 2.41E-12 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1091 d4138936e3716ca43593a1619aabf1bc 180 SUPERFAMILY SSF46785 84 158 8.05E-25 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_1091 d4138936e3716ca43593a1619aabf1bc 180 Gene3D G3DSA:1.10.10.10 2 81 4.6E-15 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1091 d4138936e3716ca43593a1619aabf1bc 180 Pfam PF04079 Segregation and condensation complex subunit ScpB 8 167 8.5E-51 T 14-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Amico_1091 d4138936e3716ca43593a1619aabf1bc 180 PIRSF PIRSF019345 1 180 9.6E-49 T 14-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Amico_1091 d4138936e3716ca43593a1619aabf1bc 180 TIGRFAM TIGR00281 TIGR00281: segregation and condensation protein B 5 178 6.4E-39 T 14-10-2018 IPR005234 Chromosome segregation/condensation protein ScpB GO:0051304 Amico_1702 042971ba3a4aa85294d4c41ccff2639f 339 Gene3D G3DSA:3.40.190.10 119 257 6.9E-51 T 14-10-2018 Amico_1702 042971ba3a4aa85294d4c41ccff2639f 339 Pfam PF16868 NMT1-like family 36 325 1.6E-35 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_1702 042971ba3a4aa85294d4c41ccff2639f 339 SUPERFAMILY SSF53850 29 326 4.48E-40 T 14-10-2018 Amico_1702 042971ba3a4aa85294d4c41ccff2639f 339 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 6 325 2.2E-37 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_1702 042971ba3a4aa85294d4c41ccff2639f 339 Gene3D G3DSA:3.40.190.10 34 325 6.9E-51 T 14-10-2018 Amico_1536 0f2b337c7bccd54a69f04a84ab77e03a 172 ProSitePatterns PS00760 Signal peptidases I lysine active site. 81 93 - T 14-10-2018 IPR019757 Peptidase S26A, signal peptidase I, lysine active site GO:0008236|GO:0016021 Amico_1536 0f2b337c7bccd54a69f04a84ab77e03a 172 Gene3D G3DSA:2.10.109.10 118 169 7.0E-10 T 14-10-2018 Amico_1536 0f2b337c7bccd54a69f04a84ab77e03a 172 Gene3D G3DSA:2.10.109.10 23 117 9.9E-28 T 14-10-2018 Amico_1536 0f2b337c7bccd54a69f04a84ab77e03a 172 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 123 142 5.5E-22 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Amico_1536 0f2b337c7bccd54a69f04a84ab77e03a 172 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 79 91 5.5E-22 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Amico_1536 0f2b337c7bccd54a69f04a84ab77e03a 172 PRINTS PR00727 Bacterial leader peptidase 1 (S26A) family signature 27 43 5.5E-22 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Amico_1536 0f2b337c7bccd54a69f04a84ab77e03a 172 TIGRFAM TIGR02227 sigpep_I_bact: signal peptidase I 12 165 7.8E-49 T 14-10-2018 IPR000223 Peptidase S26A, signal peptidase I GO:0006508|GO:0008236|GO:0016020 Amico_1536 0f2b337c7bccd54a69f04a84ab77e03a 172 ProSitePatterns PS00761 Signal peptidases I signature 3. 128 141 - T 14-10-2018 IPR019758 Peptidase S26A, signal peptidase I, conserved site GO:0008236|GO:0016021 Amico_1536 0f2b337c7bccd54a69f04a84ab77e03a 172 ProSitePatterns PS00501 Signal peptidases I serine active site. 36 43 - T 14-10-2018 IPR019756 Peptidase S26A, signal peptidase I, serine active site GO:0008236|GO:0016021 Reactome: R-HSA-1799339|Reactome: R-HSA-381771|Reactome: R-HSA-400511|Reactome: R-HSA-422085 Amico_1536 0f2b337c7bccd54a69f04a84ab77e03a 172 SUPERFAMILY SSF51306 25 170 2.09E-54 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Amico_1536 0f2b337c7bccd54a69f04a84ab77e03a 172 Pfam PF00717 Peptidase S24-like 33 103 1.7E-18 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Amico_0543 4af7e53885dfc98d08bb8ef35557bf83 123 Pfam PF01381 Helix-turn-helix 7 61 3.1E-14 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_0543 4af7e53885dfc98d08bb8ef35557bf83 123 SMART SM00530 6 61 1.6E-15 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_0543 4af7e53885dfc98d08bb8ef35557bf83 123 Gene3D G3DSA:1.10.260.40 1 81 3.6E-19 T 14-10-2018 Amico_0543 4af7e53885dfc98d08bb8ef35557bf83 123 SUPERFAMILY SSF47413 1 68 9.92E-18 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Amico_0141 163e47fd5b68682bc9af50fc951f1e2d 288 Pfam PF01380 SIS domain 122 248 7.7E-18 T 14-10-2018 IPR001347 Sugar isomerase (SIS) GO:0097367|GO:1901135 Amico_0141 163e47fd5b68682bc9af50fc951f1e2d 288 Pfam PF01418 Helix-turn-helix domain, rpiR family 2 71 7.7E-10 T 14-10-2018 IPR000281 Helix-turn-helix protein RpiR GO:0003700|GO:0006355 Amico_0141 163e47fd5b68682bc9af50fc951f1e2d 288 SUPERFAMILY SSF53697 97 250 4.89E-23 T 14-10-2018 Amico_0141 163e47fd5b68682bc9af50fc951f1e2d 288 Gene3D G3DSA:3.40.50.10490 92 271 4.5E-34 T 14-10-2018 Amico_0141 163e47fd5b68682bc9af50fc951f1e2d 288 SUPERFAMILY SSF46689 2 74 2.87E-13 T 14-10-2018 IPR009057 Homeobox-like domain superfamily GO:0003677 Amico_0141 163e47fd5b68682bc9af50fc951f1e2d 288 Gene3D G3DSA:1.10.10.10 1 73 3.2E-14 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_1294 c0ba16b9b2e878463e94c3f1a600cb5c 238 Pfam PF04172 LrgB-like family 18 229 2.8E-73 T 14-10-2018 IPR007300 CidB/LrgB family Amico_1427 ed2d7ca413176af8ab2d4933bb862bfb 418 TIGRFAM TIGR01910 DapE-ArgE: peptidase, ArgE/DapE family 17 398 3.9E-80 T 14-10-2018 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase Amico_1427 ed2d7ca413176af8ab2d4933bb862bfb 418 SUPERFAMILY SSF53187 3 404 2.77E-59 T 14-10-2018 Amico_1427 ed2d7ca413176af8ab2d4933bb862bfb 418 Gene3D G3DSA:3.40.630.10 21 393 6.0E-77 T 14-10-2018 Amico_1427 ed2d7ca413176af8ab2d4933bb862bfb 418 SUPERFAMILY SSF55031 203 316 5.83E-15 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1427 ed2d7ca413176af8ab2d4933bb862bfb 418 Pfam PF07687 Peptidase dimerisation domain 198 304 4.6E-11 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1427 ed2d7ca413176af8ab2d4933bb862bfb 418 Pfam PF01546 Peptidase family M20/M25/M40 91 403 1.2E-35 T 14-10-2018 IPR002933 Peptidase M20 GO:0016787 Amico_1427 ed2d7ca413176af8ab2d4933bb862bfb 418 Gene3D G3DSA:3.30.70.360 201 323 6.0E-77 T 14-10-2018 Amico_1300 8d1ac0cb431387bdc15b44363972e5c9 306 Pfam PF01557 Fumarylacetoacetate (FAA) hydrolase family 97 301 9.7E-60 T 14-10-2018 IPR011234 Fumarylacetoacetase-like, C-terminal GO:0003824 Amico_1300 8d1ac0cb431387bdc15b44363972e5c9 306 SUPERFAMILY SSF56529 85 304 5.1E-68 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Amico_1300 8d1ac0cb431387bdc15b44363972e5c9 306 Gene3D G3DSA:3.90.850.10 92 306 4.8E-74 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Amico_1550 6157ec160eb9a215e1bfe63d1526b225 377 Pfam PF13237 4Fe-4S dicluster domain 310 357 3.3E-6 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_1550 6157ec160eb9a215e1bfe63d1526b225 377 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 346 357 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1550 6157ec160eb9a215e1bfe63d1526b225 377 SUPERFAMILY SSF54862 307 364 4.61E-17 T 14-10-2018 Amico_1550 6157ec160eb9a215e1bfe63d1526b225 377 Gene3D G3DSA:3.30.70.20 304 367 3.0E-11 T 14-10-2018 Amico_1550 6157ec160eb9a215e1bfe63d1526b225 377 Pfam PF04015 Domain of unknown function (DUF362) 41 238 5.9E-42 T 14-10-2018 IPR007160 Domain of unknown function DUF362 Amico_0752 3fd7f1a917466a2728107cbee3e459dd 332 Pfam PF02562 PhoH-like protein 122 325 4.3E-92 T 14-10-2018 IPR003714 PhoH-like protein GO:0005524 Amico_0752 3fd7f1a917466a2728107cbee3e459dd 332 Gene3D G3DSA:3.40.50.300 119 325 1.7E-73 T 14-10-2018 Amico_0752 3fd7f1a917466a2728107cbee3e459dd 332 SUPERFAMILY SSF52540 121 300 3.57E-37 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1345 ecda1498ade15589ff22e39b69986fdb 247 SUPERFAMILY SSF102114 21 182 5.62E-8 T 14-10-2018 Amico_1345 ecda1498ade15589ff22e39b69986fdb 247 Pfam PF04055 Radical SAM superfamily 22 182 5.4E-11 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_1345 ecda1498ade15589ff22e39b69986fdb 247 SMART SM00729 16 225 0.0065 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Amico_0216 cb3b38efee45beed761eb49fb8bd40a7 347 Hamap MF_01849 Dual-specificity RNA methyltransferase RlmN [rlmN]. 4 343 67.356 T 14-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 Amico_0216 cb3b38efee45beed761eb49fb8bd40a7 347 Pfam PF04055 Radical SAM superfamily 109 274 1.6E-16 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_0216 cb3b38efee45beed761eb49fb8bd40a7 347 SUPERFAMILY SSF102114 104 298 2.75E-14 T 14-10-2018 Amico_0216 cb3b38efee45beed761eb49fb8bd40a7 347 PIRSF PIRSF006004 3 347 2.3E-127 T 14-10-2018 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr GO:0005737|GO:0006364|GO:0008173 Amico_0216 cb3b38efee45beed761eb49fb8bd40a7 347 Gene3D G3DSA:3.20.20.70 67 328 3.9E-100 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0216 cb3b38efee45beed761eb49fb8bd40a7 347 Gene3D G3DSA:1.10.150.530 5 65 2.8E-15 T 14-10-2018 Amico_0216 cb3b38efee45beed761eb49fb8bd40a7 347 TIGRFAM TIGR00048 rRNA_mod_RlmN: 23S rRNA (adenine(2503)-C(2))-methyltransferase 7 342 1.9E-117 T 14-10-2018 IPR027492 Dual-specificity RNA methyltransferase RlmN GO:0030488|GO:0070475 Amico_0216 cb3b38efee45beed761eb49fb8bd40a7 347 SMART SM00729 104 312 0.0097 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Amico_1321 242c36a2435f71abcff7e127972e80c2 330 PIRSF PIRSF006470 1 328 5.2E-75 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_1321 242c36a2435f71abcff7e127972e80c2 330 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 32 312 2.8E-69 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_1321 242c36a2435f71abcff7e127972e80c2 330 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 35 283 8.2E-53 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_1321 242c36a2435f71abcff7e127972e80c2 330 Gene3D G3DSA:3.40.190.170 25 329 9.4E-88 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1110 c7ffd8dd000f0eb97c3db0f85a71ed8f 72 Pfam PF05489 Phage Tail Protein X 5 55 3.3E-8 T 14-10-2018 IPR008861 Phage Tail Protein X-like Amico_1110 c7ffd8dd000f0eb97c3db0f85a71ed8f 72 Gene3D G3DSA:3.10.350.10 2 66 1.4E-6 T 14-10-2018 IPR036779 LysM domain superfamily Amico_1227 1967248a9516303be8df18ef1a76af8f 363 SUPERFAMILY SSF53383 16 362 1.77E-53 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1227 1967248a9516303be8df18ef1a76af8f 363 Gene3D G3DSA:3.90.1150.10 272 353 5.9E-58 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1227 1967248a9516303be8df18ef1a76af8f 363 Gene3D G3DSA:3.40.640.10 59 271 5.9E-58 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1227 1967248a9516303be8df18ef1a76af8f 363 Pfam PF00155 Aminotransferase class I and II 59 314 3.3E-32 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_0336 44b7ad777b67f31b55c1b9569366aa29 343 SUPERFAMILY SSF52540 6 235 1.55E-46 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0336 44b7ad777b67f31b55c1b9569366aa29 343 SMART SM00382 36 225 5.1E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0336 44b7ad777b67f31b55c1b9569366aa29 343 Pfam PF00005 ABC transporter 31 176 1.3E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0336 44b7ad777b67f31b55c1b9569366aa29 343 Gene3D G3DSA:3.40.50.300 9 261 4.3E-50 T 14-10-2018 Amico_0797 66a4cb131ba7c92aa4c74d4ebe157b51 186 SUPERFAMILY SSF53323 3 182 4.97E-33 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_0797 66a4cb131ba7c92aa4c74d4ebe157b51 186 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 12 178 8.4E-29 T 14-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Amico_0797 66a4cb131ba7c92aa4c74d4ebe157b51 186 Gene3D G3DSA:3.40.920.10 1 185 3.0E-52 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_1409 90eb3b3a1b9904dc90b2a665fca66a84 133 Pfam PF04472 Cell division protein SepF 65 120 1.8E-15 T 14-10-2018 IPR007561 Cell division protein SepF/SepF-related GO:0090529 Amico_1409 90eb3b3a1b9904dc90b2a665fca66a84 133 Gene3D G3DSA:3.30.110.150 49 131 3.6E-14 T 14-10-2018 IPR038594 SepF-like superfamily Amico_0676 705fbbe0503bef9587580b19f31da42e 264 SMART SM00481 19 86 4.2E-8 T 14-10-2018 IPR003141 Polymerase/histidinol phosphatase, N-terminal Amico_0676 705fbbe0503bef9587580b19f31da42e 264 SUPERFAMILY SSF89550 15 256 2.16E-28 T 14-10-2018 IPR016195 Polymerase/histidinol phosphatase-like GO:0003824 Reactome: R-HSA-6784531|Reactome: R-HSA-6791226 Amico_0676 705fbbe0503bef9587580b19f31da42e 264 Pfam PF02811 PHP domain 20 98 2.7E-8 T 14-10-2018 IPR004013 PHP domain GO:0003824 Amico_0695 17ea3f525c85a39511288b1afc1b4adc 210 Pfam PF14804 Jag N-terminus 13 55 2.0E-8 T 14-10-2018 IPR032782 Jag, N-terminal Amico_0695 17ea3f525c85a39511288b1afc1b4adc 210 Pfam PF01424 R3H domain 143 201 1.0E-13 T 14-10-2018 IPR001374 R3H domain GO:0003676 Amico_0695 17ea3f525c85a39511288b1afc1b4adc 210 SUPERFAMILY SSF82708 156 201 1.1E-7 T 14-10-2018 IPR036867 R3H domain superfamily GO:0003676 Amico_0695 17ea3f525c85a39511288b1afc1b4adc 210 Pfam PF13083 KH domain 89 129 1.6E-9 T 14-10-2018 Amico_0695 17ea3f525c85a39511288b1afc1b4adc 210 SMART SM01245 8 58 2.2E-7 T 14-10-2018 IPR032782 Jag, N-terminal Amico_0695 17ea3f525c85a39511288b1afc1b4adc 210 Gene3D G3DSA:3.30.300.20 64 137 8.5E-17 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Amico_0695 17ea3f525c85a39511288b1afc1b4adc 210 SMART SM00393 123 202 1.2E-13 T 14-10-2018 IPR001374 R3H domain GO:0003676 Amico_0695 17ea3f525c85a39511288b1afc1b4adc 210 Gene3D G3DSA:3.30.1370.50 138 210 1.4E-25 T 14-10-2018 IPR036867 R3H domain superfamily GO:0003676 Amico_0022 d51210867629524b31cb3fee8d3bdc1c 259 Gene3D G3DSA:3.40.50.10310 1 252 4.7E-61 T 14-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 Amico_0022 d51210867629524b31cb3fee8d3bdc1c 259 SUPERFAMILY SSF102215 1 250 5.75E-57 T 14-10-2018 IPR024087 Creatininase-like superfamily KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 Amico_0022 d51210867629524b31cb3fee8d3bdc1c 259 Pfam PF02633 Creatinine amidohydrolase 5 246 1.4E-57 T 14-10-2018 IPR003785 Creatininase/formamide hydrolase KEGG: 00740+3.5.1.102|MetaCyc: PWY-6167 Amico_0788 189c0f5b2165d3e24f93515b25fcd2c7 505 SUPERFAMILY SSF53850 30 502 1.05E-119 T 14-10-2018 Amico_0788 189c0f5b2165d3e24f93515b25fcd2c7 505 Gene3D G3DSA:3.90.76.10 39 184 6.6E-119 T 14-10-2018 Amico_0788 189c0f5b2165d3e24f93515b25fcd2c7 505 Gene3D G3DSA:3.10.105.10 260 477 6.6E-119 T 14-10-2018 Amico_0788 189c0f5b2165d3e24f93515b25fcd2c7 505 PIRSF PIRSF002741 1 505 1.2E-98 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Amico_0788 189c0f5b2165d3e24f93515b25fcd2c7 505 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 73 395 3.5E-77 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain Amico_0788 189c0f5b2165d3e24f93515b25fcd2c7 505 Gene3D G3DSA:3.40.190.10 185 487 6.6E-119 T 14-10-2018 Amico_1352 213683bfa30c3e27af71bc08247c3519 183 Gene3D G3DSA:3.40.50.850 2 183 6.8E-53 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Amico_1352 213683bfa30c3e27af71bc08247c3519 183 SUPERFAMILY SSF52499 4 183 6.41E-47 T 14-10-2018 IPR036380 Isochorismatase-like superfamily GO:0003824 Amico_1352 213683bfa30c3e27af71bc08247c3519 183 Pfam PF00857 Isochorismatase family 12 160 2.9E-33 T 14-10-2018 IPR000868 Isochorismatase-like GO:0003824 Amico_1806 a333b92264b08eca594c5850ad43b47a 325 Gene3D G3DSA:3.40.190.10 116 253 1.8E-98 T 14-10-2018 Amico_1806 a333b92264b08eca594c5850ad43b47a 325 TIGRFAM TIGR02122 TRAP_TAXI: TRAP transporter solute receptor, TAXI family 11 316 1.6E-98 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_1806 a333b92264b08eca594c5850ad43b47a 325 Pfam PF16868 NMT1-like family 32 316 1.4E-84 T 14-10-2018 IPR011852 TRAP transporter solute receptor, TAXI family Amico_1806 a333b92264b08eca594c5850ad43b47a 325 SUPERFAMILY SSF53850 28 317 1.27E-73 T 14-10-2018 Amico_1806 a333b92264b08eca594c5850ad43b47a 325 Gene3D G3DSA:3.40.190.10 32 316 1.8E-98 T 14-10-2018 Amico_1576 951c90c261b27f4f778f954802df5b6e 564 SUPERFAMILY SSF161098 303 550 4.03E-43 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1576 951c90c261b27f4f778f954802df5b6e 564 Gene3D G3DSA:1.10.3720.10 302 553 2.2E-47 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1576 951c90c261b27f4f778f954802df5b6e 564 Gene3D G3DSA:1.10.3720.10 18 286 2.0E-61 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1576 951c90c261b27f4f778f954802df5b6e 564 SUPERFAMILY SSF161098 17 281 2.99E-54 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1576 951c90c261b27f4f778f954802df5b6e 564 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 86 280 1.4E-17 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_1576 951c90c261b27f4f778f954802df5b6e 564 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 370 545 4.6E-9 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_1347 54f4acfe7bd89935de810ae044846c22 383 SUPERFAMILY SSF111369 56 282 1.83E-14 T 14-10-2018 Amico_1347 54f4acfe7bd89935de810ae044846c22 383 Gene3D G3DSA:1.10.287.470 97 188 1.0E-54 T 14-10-2018 Amico_1347 54f4acfe7bd89935de810ae044846c22 383 Gene3D G3DSA:2.40.420.20 301 360 1.0E-54 T 14-10-2018 Amico_1347 54f4acfe7bd89935de810ae044846c22 383 Pfam PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion 59 279 1.5E-15 T 14-10-2018 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain Amico_1347 54f4acfe7bd89935de810ae044846c22 383 Gene3D G3DSA:2.40.50.100 63 223 1.0E-54 T 14-10-2018 Amico_1347 54f4acfe7bd89935de810ae044846c22 383 Gene3D G3DSA:2.40.30.170 52 300 1.0E-54 T 14-10-2018 Amico_1347 54f4acfe7bd89935de810ae044846c22 383 TIGRFAM TIGR01730 RND_mfp: efflux transporter, RND family, MFP subunit 41 374 2.6E-43 T 14-10-2018 IPR006143 RND efflux pump, membrane fusion protein GO:0005215|GO:0016020|GO:0055085 Amico_1604 233f037cd26ea594cf2e056e6c17c482 284 Hamap MF_00156 3-methyl-2-oxobutanoate hydroxymethyltransferase [panB]. 5 266 40.394 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Amico_1604 233f037cd26ea594cf2e056e6c17c482 284 TIGRFAM TIGR00222 panB: 3-methyl-2-oxobutanoate hydroxymethyltransferase 5 267 3.1E-98 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Amico_1604 233f037cd26ea594cf2e056e6c17c482 284 SUPERFAMILY SSF51621 9 266 3.41E-100 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Amico_1604 233f037cd26ea594cf2e056e6c17c482 284 PIRSF PIRSF000388 1 269 4.1E-114 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Amico_1604 233f037cd26ea594cf2e056e6c17c482 284 Gene3D G3DSA:3.20.20.60 7 277 2.4E-114 T 14-10-2018 Amico_1604 233f037cd26ea594cf2e056e6c17c482 284 Pfam PF02548 Ketopantoate hydroxymethyltransferase 10 261 5.4E-107 T 14-10-2018 IPR003700 Ketopantoate hydroxymethyltransferase GO:0003864|GO:0015940 KEGG: 00770+2.1.2.11|MetaCyc: PWY-6654 Amico_0395 2be492d3c8f6c38f4de055ff530b5b08 262 SUPERFAMILY SSF52467 6 239 2.22E-74 T 14-10-2018 IPR029035 DHS-like NAD/FAD-binding domain superfamily Amico_0395 2be492d3c8f6c38f4de055ff530b5b08 262 Gene3D G3DSA:3.30.1600.10 33 177 1.5E-68 T 14-10-2018 IPR026591 Sirtuin, catalytic core small domain superfamily Amico_0395 2be492d3c8f6c38f4de055ff530b5b08 262 Gene3D G3DSA:3.40.50.1220 10 245 1.5E-68 T 14-10-2018 Amico_0395 2be492d3c8f6c38f4de055ff530b5b08 262 Pfam PF02146 Sir2 family 27 203 7.4E-53 T 14-10-2018 IPR003000 Sirtuin family GO:0070403 Amico_1552 4ee073a5070ae9cdd151b9cff4580087 157 SUPERFAMILY SSF53163 1 148 2.41E-22 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily Amico_1552 4ee073a5070ae9cdd151b9cff4580087 157 Gene3D G3DSA:3.40.50.1450 1 152 2.1E-23 T 14-10-2018 IPR023430 Peptidase HybD-like domain superfamily Amico_1552 4ee073a5070ae9cdd151b9cff4580087 157 TIGRFAM TIGR00072 hydrog_prot: hydrogenase maturation protease 5 145 2.1E-14 T 14-10-2018 IPR000671 Peptidase A31 family GO:0008047|GO:0008233 Amico_0825 df44af8fdf732d188aea93220367c626 223 SUPERFAMILY SSF110997 147 220 5.36E-13 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Amico_0825 df44af8fdf732d188aea93220367c626 223 Gene3D G3DSA:3.30.70.1070 149 221 1.3E-13 T 14-10-2018 IPR036680 Sporulation-like domain superfamily GO:0042834 Amico_0825 df44af8fdf732d188aea93220367c626 223 Pfam PF05036 Sporulation related domain 147 219 2.6E-14 T 14-10-2018 IPR007730 Sporulation-like domain GO:0042834 Amico_1033 e8dff79c310221ac44ee8adf8cee9cd8 418 Pfam PF13742 OB-fold nucleic acid binding domain 9 103 4.7E-23 T 14-10-2018 IPR025824 OB-fold nucleic acid binding domain GO:0003676 Amico_1033 e8dff79c310221ac44ee8adf8cee9cd8 418 Hamap MF_00378 Exodeoxyribonuclease 7 large subunit [xseA]. 6 398 23.403 T 14-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Amico_1033 e8dff79c310221ac44ee8adf8cee9cd8 418 Pfam PF02601 Exonuclease VII, large subunit 320 394 1.8E-8 T 14-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 Amico_1033 e8dff79c310221ac44ee8adf8cee9cd8 418 Pfam PF02601 Exonuclease VII, large subunit 127 343 2.3E-65 T 14-10-2018 IPR020579 Exonuclease VII, large subunit, C-terminal GO:0008855 Amico_1033 e8dff79c310221ac44ee8adf8cee9cd8 418 TIGRFAM TIGR00237 xseA: exodeoxyribonuclease VII, large subunit 10 398 6.7E-123 T 14-10-2018 IPR003753 Exonuclease VII, large subunit GO:0006308|GO:0008855|GO:0009318 Amico_1747 972d916988345409b9c6af0c70c15a6a 250 Gene3D G3DSA:3.40.390.50 16 118 1.4E-7 T 14-10-2018 Amico_1747 972d916988345409b9c6af0c70c15a6a 250 Pfam PF06114 IrrE N-terminal-like domain 48 162 1.2E-16 T 14-10-2018 IPR010359 IrrE N-terminal-like domain Amico_0015 fa7dfae76858d515c51c153059cb50ef 105 Gene3D G3DSA:3.30.420.130 1 105 8.3E-25 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Amico_0015 fa7dfae76858d515c51c153059cb50ef 105 Pfam PF02579 Dinitrogenase iron-molybdenum cofactor 13 102 3.8E-18 T 14-10-2018 IPR003731 Dinitrogenase iron-molybdenum cofactor biosynthesis Amico_0015 fa7dfae76858d515c51c153059cb50ef 105 SUPERFAMILY SSF53146 1 102 5.23E-23 T 14-10-2018 IPR036105 Dinitrogenase iron-molybdenum cofactor biosynthesis superfamily Amico_1052 de595fbbc88660bd183ee81f4a7a22b1 256 SUPERFAMILY SSF52540 43 161 2.19E-13 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1052 de595fbbc88660bd183ee81f4a7a22b1 256 Pfam PF13177 DNA polymerase III, delta subunit 16 162 4.1E-27 T 14-10-2018 Amico_1052 de595fbbc88660bd183ee81f4a7a22b1 256 Gene3D G3DSA:3.40.50.300 7 163 7.3E-30 T 14-10-2018 Amico_1728 f84625f0ca88cec7a8a7e351660e272a 490 Pfam PF14296 O-antigen polysaccharide polymerase Wzy 10 466 4.7E-8 T 14-10-2018 IPR029468 O-antigen polysaccharide polymerase Wzy Amico_1728 f84625f0ca88cec7a8a7e351660e272a 490 TIGRFAM TIGR04370 glyco_rpt_poly: oligosaccharide repeat unit polymerase 53 461 2.7E-12 T 14-10-2018 Amico_0272 ab03761c1897bc5afff38e25be7d2823 367 Gene3D G3DSA:3.40.1350.60 87 238 1.9E-35 T 14-10-2018 Amico_0272 ab03761c1897bc5afff38e25be7d2823 367 Gene3D G3DSA:2.40.50.580 10 85 1.2E-17 T 14-10-2018 Amico_0272 ab03761c1897bc5afff38e25be7d2823 367 Pfam PF03749 Sugar fermentation stimulation protein 19 207 8.5E-45 T 14-10-2018 IPR005224 Sugar fermentation stimulation protein Amico_0272 ab03761c1897bc5afff38e25be7d2823 367 TIGRFAM TIGR00230 sfsA: sugar fermentation stimulation protein 11 209 4.1E-41 T 14-10-2018 IPR005224 Sugar fermentation stimulation protein Amico_0584 b5a6093d6624ca2c965f768836dd3818 402 Pfam PF01594 AI-2E family transporter 43 376 3.6E-38 T 14-10-2018 IPR002549 Transmembrane protein TqsA-like Amico_0546 5d843933e7fba3263b54e7da9895a103 141 SUPERFAMILY SSF117856 2 130 3.92E-27 T 14-10-2018 Amico_0546 5d843933e7fba3263b54e7da9895a103 141 Pfam PF03479 Domain of unknown function (DUF296) 9 119 7.3E-21 T 14-10-2018 IPR005175 PPC domain Amico_0546 5d843933e7fba3263b54e7da9895a103 141 Gene3D G3DSA:3.30.1330.80 1 136 1.8E-33 T 14-10-2018 Amico_1608 fe1b4186eae642485a4d7897380b5f58 302 SUPERFAMILY SSF103481 194 294 1.07E-15 T 14-10-2018 Amico_1608 fe1b4186eae642485a4d7897380b5f58 302 SUPERFAMILY SSF103481 47 149 3.4E-10 T 14-10-2018 Amico_1608 fe1b4186eae642485a4d7897380b5f58 302 Pfam PF00892 EamA-like transporter family 157 290 1.2E-19 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_1608 fe1b4186eae642485a4d7897380b5f58 302 Pfam PF00892 EamA-like transporter family 12 146 3.1E-17 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_1835 14c6afd0809b6c55e31452d09cb9cf9d 471 SUPERFAMILY SSF51338 5 446 1.04E-22 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1835 14c6afd0809b6c55e31452d09cb9cf9d 471 SUPERFAMILY SSF51556 57 384 1.4E-93 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_1835 14c6afd0809b6c55e31452d09cb9cf9d 471 Pfam PF01979 Amidohydrolase family 53 440 2.6E-27 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Amico_1835 14c6afd0809b6c55e31452d09cb9cf9d 471 Gene3D G3DSA:2.30.40.10 8 452 7.0E-136 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1835 14c6afd0809b6c55e31452d09cb9cf9d 471 Gene3D G3DSA:3.20.20.140 57 380 7.0E-136 T 14-10-2018 Amico_1912 9095f0fec79b78bbcc7f6208d3b4482e 414 SUPERFAMILY SSF117892 128 224 1.57E-6 T 14-10-2018 IPR036013 Band 7/SPFH domain superfamily Amico_1912 9095f0fec79b78bbcc7f6208d3b4482e 414 Pfam PF13421 SPFH domain-Band 7 family 29 242 1.7E-57 T 14-10-2018 IPR033880 SPFH domain, YdjI-like Amico_1912 9095f0fec79b78bbcc7f6208d3b4482e 414 Pfam PF12773 Double zinc ribbon 362 405 1.3E-11 T 14-10-2018 IPR025874 Double zinc ribbon Amico_1912 9095f0fec79b78bbcc7f6208d3b4482e 414 Pfam PF12773 Double zinc ribbon 313 355 3.6E-8 T 14-10-2018 IPR025874 Double zinc ribbon Amico_1318 0a8d329fd5001e337c1340f867c2ccab 293 Pfam PF13714 Phosphoenolpyruvate phosphomutase 10 251 2.5E-57 T 14-10-2018 Amico_1318 0a8d329fd5001e337c1340f867c2ccab 293 SUPERFAMILY SSF51621 7 289 8.97E-98 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Amico_1318 0a8d329fd5001e337c1340f867c2ccab 293 Gene3D G3DSA:3.20.20.60 2 292 4.2E-110 T 14-10-2018 Amico_1318 0a8d329fd5001e337c1340f867c2ccab 293 ProSitePatterns PS00161 Isocitrate lyase signature. 120 125 - T 14-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 Amico_1316 7fed139cd5a7dd185a53e7d3902d199f 314 SUPERFAMILY SSF52518 11 310 2.39E-76 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1316 7fed139cd5a7dd185a53e7d3902d199f 314 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 48 215 1.1E-24 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Amico_1316 7fed139cd5a7dd185a53e7d3902d199f 314 Gene3D G3DSA:3.40.50.970 82 307 2.6E-64 T 14-10-2018 Amico_0276 fec969bf548498906e42aa5049f7ee9b 462 SUPERFAMILY SSF81340 15 410 5.36E-80 T 14-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 Amico_0276 fec969bf548498906e42aa5049f7ee9b 462 PRINTS PR00762 Chloride channel signature 351 367 3.0E-17 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Amico_0276 fec969bf548498906e42aa5049f7ee9b 462 PRINTS PR00762 Chloride channel signature 160 179 3.0E-17 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Amico_0276 fec969bf548498906e42aa5049f7ee9b 462 PRINTS PR00762 Chloride channel signature 109 128 3.0E-17 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Amico_0276 fec969bf548498906e42aa5049f7ee9b 462 PRINTS PR00762 Chloride channel signature 323 343 3.0E-17 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Amico_0276 fec969bf548498906e42aa5049f7ee9b 462 Pfam PF00654 Voltage gated chloride channel 67 400 8.9E-65 T 14-10-2018 IPR001807 Chloride channel, voltage gated GO:0005247|GO:0006821|GO:0016020|GO:0055085 Reactome: R-HSA-2672351 Amico_0276 fec969bf548498906e42aa5049f7ee9b 462 Gene3D G3DSA:1.10.3080.10 21 413 1.2E-68 T 14-10-2018 IPR014743 Chloride channel, core Reactome: R-HSA-2672351 Amico_0037 eab1ef28bf96085bb18191eb79aea420 260 Pfam PF00459 Inositol monophosphatase family 5 257 1.8E-51 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Amico_0037 eab1ef28bf96085bb18191eb79aea420 260 ProSitePatterns PS00629 Inositol monophosphatase family signature 1. 81 94 - T 14-10-2018 IPR020583 Inositol monophosphatase, metal-binding site Amico_0037 eab1ef28bf96085bb18191eb79aea420 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 81 97 2.0E-39 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Amico_0037 eab1ef28bf96085bb18191eb79aea420 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 207 231 2.0E-39 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Amico_0037 eab1ef28bf96085bb18191eb79aea420 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 36 56 2.0E-39 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Amico_0037 eab1ef28bf96085bb18191eb79aea420 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 176 197 2.0E-39 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Amico_0037 eab1ef28bf96085bb18191eb79aea420 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 130 153 2.0E-39 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Amico_0037 eab1ef28bf96085bb18191eb79aea420 260 PRINTS PR00377 Inositol monophosphatase superfamily signature 58 74 2.0E-39 T 14-10-2018 IPR000760 Inositol monophosphatase-like GO:0046854 Amico_0037 eab1ef28bf96085bb18191eb79aea420 260 SUPERFAMILY SSF56655 6 259 1.15E-65 T 14-10-2018 Amico_0037 eab1ef28bf96085bb18191eb79aea420 260 Gene3D G3DSA:3.30.540.10 3 138 5.9E-34 T 14-10-2018 Amico_0037 eab1ef28bf96085bb18191eb79aea420 260 Gene3D G3DSA:3.40.190.80 141 260 8.6E-35 T 14-10-2018 Amico_0215 153cb7d400b76d33ab8dfd99503abeb7 86 SMART SM00899 7 78 7.3E-11 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Amico_0215 153cb7d400b76d33ab8dfd99503abeb7 86 SUPERFAMILY SSF50037 9 78 4.88E-12 T 14-10-2018 IPR008988 Transcriptional repressor, C-terminal Amico_0215 153cb7d400b76d33ab8dfd99503abeb7 86 Pfam PF04023 FeoA domain 8 78 9.8E-14 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Amico_0215 153cb7d400b76d33ab8dfd99503abeb7 86 Gene3D G3DSA:2.30.30.90 8 84 1.1E-13 T 14-10-2018 IPR038157 Ferrous iron transporter, core domain Amico_0297 3500e7c079e0a091efec8e3036a4bf08 347 SUPERFAMILY SSF54675 22 128 2.75E-28 T 14-10-2018 Amico_0297 3500e7c079e0a091efec8e3036a4bf08 347 Gene3D G3DSA:3.90.1170.20 15 120 1.4E-28 T 14-10-2018 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily GO:0016763 Reactome: R-HSA-196807 Amico_0297 3500e7c079e0a091efec8e3036a4bf08 347 Gene3D G3DSA:3.20.20.70 121 313 5.1E-58 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0297 3500e7c079e0a091efec8e3036a4bf08 347 PIRSF PIRSF000484 73 331 1.4E-42 T 14-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Amico_0297 3500e7c079e0a091efec8e3036a4bf08 347 PIRSF PIRSF000484 25 83 3.7 T 14-10-2018 IPR007229 Nicotinate phosphoribosyltransferase family KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381|Reactome: R-HSA-197264 Amico_0297 3500e7c079e0a091efec8e3036a4bf08 347 Pfam PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain 46 126 3.5E-11 T 14-10-2018 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal GO:0016763 Reactome: R-HSA-196807 Amico_0297 3500e7c079e0a091efec8e3036a4bf08 347 Pfam PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain 130 319 2.6E-17 T 14-10-2018 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal GO:0004514|GO:0009435 Reactome: R-HSA-196807 Amico_0297 3500e7c079e0a091efec8e3036a4bf08 347 SUPERFAMILY SSF51690 127 341 1.57E-56 T 14-10-2018 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal GO:0004514|GO:0009435 KEGG: 00760+6.3.4.21|MetaCyc: PWY-5381 Amico_0424 dacbfe53fc1210047f3bf63de43bd6af 277 SMART SM00354 2 72 2.0E-27 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Amico_0424 dacbfe53fc1210047f3bf63de43bd6af 277 SUPERFAMILY SSF47413 2 60 7.35E-18 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Amico_0424 dacbfe53fc1210047f3bf63de43bd6af 277 SUPERFAMILY SSF53822 59 160 1.6E-11 T 14-10-2018 IPR028082 Periplasmic binding protein-like I Amico_0424 dacbfe53fc1210047f3bf63de43bd6af 277 Pfam PF00356 Bacterial regulatory proteins, lacI family 4 49 9.0E-17 T 14-10-2018 IPR000843 LacI-type HTH domain GO:0003677|GO:0006355 Amico_0424 dacbfe53fc1210047f3bf63de43bd6af 277 Gene3D G3DSA:3.40.50.2300 56 165 1.1E-16 T 14-10-2018 Amico_0424 dacbfe53fc1210047f3bf63de43bd6af 277 Gene3D G3DSA:1.10.260.40 1 55 8.8E-22 T 14-10-2018 Amico_0919 02fc23a8127c6083094c7bbf144dfb75 170 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 28 157 1.8E-21 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1246 8fbc1e5f96fc3719d4a0d1ca081ec4fd 73 Gene3D G3DSA:2.30.30.90 1 73 2.8E-16 T 14-10-2018 IPR038157 Ferrous iron transporter, core domain Amico_1246 8fbc1e5f96fc3719d4a0d1ca081ec4fd 73 SUPERFAMILY SSF50037 4 72 1.28E-12 T 14-10-2018 IPR008988 Transcriptional repressor, C-terminal Amico_1246 8fbc1e5f96fc3719d4a0d1ca081ec4fd 73 SMART SM00899 2 72 4.7E-16 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Amico_1246 8fbc1e5f96fc3719d4a0d1ca081ec4fd 73 Pfam PF04023 FeoA domain 2 71 3.0E-15 T 14-10-2018 IPR007167 Ferrous iron transporter FeoA domain GO:0046914 Amico_0494 55115c09ed4863425b04e5ace97a93af 66 PRINTS PR00050 Cold shock protein signature 4 19 2.1E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_0494 55115c09ed4863425b04e5ace97a93af 66 PRINTS PR00050 Cold shock protein signature 39 57 2.1E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_0494 55115c09ed4863425b04e5ace97a93af 66 PRINTS PR00050 Cold shock protein signature 24 33 2.1E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_0494 55115c09ed4863425b04e5ace97a93af 66 PIRSF PIRSF002599 1 66 3.8E-23 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 Amico_0494 55115c09ed4863425b04e5ace97a93af 66 SMART SM00357 3 66 2.5E-31 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 Amico_0494 55115c09ed4863425b04e5ace97a93af 66 SUPERFAMILY SSF50249 2 65 1.89E-24 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0494 55115c09ed4863425b04e5ace97a93af 66 Gene3D G3DSA:2.40.50.140 1 64 8.6E-29 T 14-10-2018 Amico_0494 55115c09ed4863425b04e5ace97a93af 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 64 1.1E-29 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_0166 30257d31af19547a9d49dfef2ce215a5 186 Pfam PF03352 Methyladenine glycosylase 6 182 1.2E-80 T 14-10-2018 IPR005019 Methyladenine glycosylase GO:0006284|GO:0008725 Amico_0166 30257d31af19547a9d49dfef2ce215a5 186 Gene3D G3DSA:1.10.340.30 1 185 2.7E-85 T 14-10-2018 Amico_0166 30257d31af19547a9d49dfef2ce215a5 186 TIGRFAM TIGR00624 tag: DNA-3-methyladenine glycosylase I 2 181 6.9E-71 T 14-10-2018 IPR004597 DNA-3-methyladenine glycosylase I GO:0006284|GO:0008725 Amico_0166 30257d31af19547a9d49dfef2ce215a5 186 SUPERFAMILY SSF48150 1 184 1.22E-80 T 14-10-2018 IPR011257 DNA glycosylase GO:0003824|GO:0006281 Reactome: R-HSA-110357 Amico_0506 6920a0a9a6198f89fe2696df8dbf1c3a 632 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 118 547 3.8E-89 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_0506 6920a0a9a6198f89fe2696df8dbf1c3a 632 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 24 621 1.5E-187 T 14-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ Amico_0789 aac79ca6522ac0131c63417d97809689 347 SUPERFAMILY SSF56601 5 342 5.28E-43 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Amico_0789 aac79ca6522ac0131c63417d97809689 347 Gene3D G3DSA:3.40.710.10 2 346 5.2E-46 T 14-10-2018 Amico_0789 aac79ca6522ac0131c63417d97809689 347 Pfam PF00144 Beta-lactamase 12 332 1.5E-26 T 14-10-2018 IPR001466 Beta-lactamase-related Amico_0416 17c9f13dadc7c1e6a4445c93aee9d2a0 258 ProSitePatterns PS00211 ABC transporters family signature. 140 154 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_0416 17c9f13dadc7c1e6a4445c93aee9d2a0 258 SMART SM00382 29 216 2.7E-16 T 14-10-2018 IPR003593 AAA+ ATPase domain Amico_0416 17c9f13dadc7c1e6a4445c93aee9d2a0 258 Gene3D G3DSA:3.40.50.300 2 254 8.4E-80 T 14-10-2018 Amico_0416 17c9f13dadc7c1e6a4445c93aee9d2a0 258 SUPERFAMILY SSF52540 5 238 6.74E-78 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0416 17c9f13dadc7c1e6a4445c93aee9d2a0 258 Pfam PF00005 ABC transporter 20 168 4.3E-35 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_0416 17c9f13dadc7c1e6a4445c93aee9d2a0 258 PIRSF PIRSF039085 1 244 3.1E-109 T 14-10-2018 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type GO:0003333|GO:0015424 Amico_1222 41a2cbd77623a77f358a1ed9bb4766f9 118 SUPERFAMILY SSF51182 18 115 9.21E-16 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Amico_1222 41a2cbd77623a77f358a1ed9bb4766f9 118 Gene3D G3DSA:2.60.120.10 9 113 1.1E-16 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Amico_1222 41a2cbd77623a77f358a1ed9bb4766f9 118 Pfam PF07883 Cupin domain 44 112 1.6E-13 T 14-10-2018 IPR013096 Cupin 2, conserved barrel Amico_1255 d4dadfc2aa3a7f0c3fb84b87754524f7 228 Pfam PF01177 Asp/Glu/Hydantoin racemase 8 221 4.1E-48 T 14-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Amico_1255 d4dadfc2aa3a7f0c3fb84b87754524f7 228 SUPERFAMILY SSF53681 119 225 2.94E-23 T 14-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Amico_1255 d4dadfc2aa3a7f0c3fb84b87754524f7 228 Gene3D G3DSA:3.40.50.1860 105 212 9.8E-66 T 14-10-2018 Amico_1255 d4dadfc2aa3a7f0c3fb84b87754524f7 228 ProSitePatterns PS00924 Aspartate and glutamate racemases signature 2. 190 200 - T 14-10-2018 IPR033134 Asp/Glu racemase, active site 2 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Amico_1255 d4dadfc2aa3a7f0c3fb84b87754524f7 228 TIGRFAM TIGR00035 asp_race: aspartate racemase 1 227 5.7E-50 T 14-10-2018 IPR004380 Aspartate racemase GO:0006520|GO:0016855 Amico_1255 d4dadfc2aa3a7f0c3fb84b87754524f7 228 SUPERFAMILY SSF53681 3 113 1.8E-23 T 14-10-2018 IPR001920 Asp/Glu racemase GO:0016855 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Amico_1255 d4dadfc2aa3a7f0c3fb84b87754524f7 228 Gene3D G3DSA:3.40.50.1860 5 221 9.8E-66 T 14-10-2018 Amico_0078 24d50fa2453ae8dcca780c86a2788c7c 289 Pfam PF03313 Serine dehydratase alpha chain 15 272 1.2E-66 T 14-10-2018 IPR005130 Serine dehydratase-like, alpha subunit Amico_0078 24d50fa2453ae8dcca780c86a2788c7c 289 TIGRFAM TIGR00718 sda_alpha: L-serine dehydratase, iron-sulfur-dependent, alpha subunit 4 286 1.8E-84 T 14-10-2018 IPR004642 Serine dehydratase, alpha subunit GO:0003941|GO:0006094 KEGG: 00260+4.3.1.17|KEGG: 00270+4.3.1.17 Amico_1017 678aaa3265fb6bfe92ce2cc0c0aaa26c 248 Gene3D G3DSA:3.40.50.970 75 236 2.9E-20 T 14-10-2018 Amico_1017 678aaa3265fb6bfe92ce2cc0c0aaa26c 248 SUPERFAMILY SSF52518 17 242 8.56E-57 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1017 678aaa3265fb6bfe92ce2cc0c0aaa26c 248 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 53 212 5.2E-25 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Amico_0268 5af5f03f2b7799e9d09f6affd3045754 135 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 16 89 7.3E-12 T 14-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 Amico_0885 5af5f03f2b7799e9d09f6affd3045754 135 Pfam PF04277 Oxaloacetate decarboxylase, gamma chain 16 89 7.3E-12 T 14-10-2018 IPR005899 Sodium ion-translocating decarboxylase GO:0008948|GO:0015081|GO:0016020|GO:0036376 KEGG: 00620+4.1.1.3 Amico_0820 5ccc2793325580ee6aa951111d3baa15 471 SUPERFAMILY SSF53244 319 464 2.49E-43 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Amico_0820 5ccc2793325580ee6aa951111d3baa15 471 Hamap MF_00046 UDP-N-acetylmuramate--L-alanine ligase [murC]. 11 468 36.302 T 14-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_0820 5ccc2793325580ee6aa951111d3baa15 471 SUPERFAMILY SSF53623 101 318 1.96E-57 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Amico_0820 5ccc2793325580ee6aa951111d3baa15 471 Pfam PF08245 Mur ligase middle domain 118 300 8.4E-26 T 14-10-2018 IPR013221 Mur ligase, central GO:0005524|GO:0009058 Amico_0820 5ccc2793325580ee6aa951111d3baa15 471 Gene3D G3DSA:3.40.50.720 12 100 2.5E-25 T 14-10-2018 Amico_0820 5ccc2793325580ee6aa951111d3baa15 471 TIGRFAM TIGR01082 murC: UDP-N-acetylmuramate--L-alanine ligase 13 462 2.9E-136 T 14-10-2018 IPR005758 UDP-N-acetylmuramate--L-alanine ligase GO:0008763|GO:0009252 KEGG: 00471+6.3.2.8|KEGG: 00550+6.3.2.8|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_0820 5ccc2793325580ee6aa951111d3baa15 471 Gene3D G3DSA:3.90.190.20 318 471 2.2E-51 T 14-10-2018 IPR036615 Mur ligase, C-terminal domain superfamily GO:0005524|GO:0009058|GO:0016874 Reactome: R-HSA-196757 Amico_0820 5ccc2793325580ee6aa951111d3baa15 471 Gene3D G3DSA:3.40.1190.10 102 317 4.3E-66 T 14-10-2018 IPR036565 Mur-like, catalytic domain superfamily GO:0005524|GO:0009058 Reactome: R-HSA-196757 Amico_0820 5ccc2793325580ee6aa951111d3baa15 471 SUPERFAMILY SSF51984 12 99 4.32E-23 T 14-10-2018 Amico_0820 5ccc2793325580ee6aa951111d3baa15 471 Pfam PF02875 Mur ligase family, glutamate ligase domain 321 406 2.5E-21 T 14-10-2018 IPR004101 Mur ligase, C-terminal GO:0005524|GO:0009058|GO:0016874 Amico_0820 5ccc2793325580ee6aa951111d3baa15 471 Pfam PF01225 Mur ligase family, catalytic domain 13 114 1.3E-16 T 14-10-2018 IPR000713 Mur ligase, N-terminal catalytic domain GO:0005524|GO:0009058 Amico_0012 145ff45986e15320883770a130953a34 220 Gene3D G3DSA:3.40.50.720 4 208 2.0E-64 T 14-10-2018 Amico_0012 145ff45986e15320883770a130953a34 220 PIRSF PIRSF000161 1 213 2.3E-57 T 14-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0012 145ff45986e15320883770a130953a34 220 SUPERFAMILY SSF51735 1 210 9.07E-25 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0012 145ff45986e15320883770a130953a34 220 Pfam PF05173 Dihydrodipicolinate reductase, C-terminus 99 209 6.1E-34 T 14-10-2018 IPR022663 Dihydrodipicolinate reductase, C-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0012 145ff45986e15320883770a130953a34 220 Gene3D G3DSA:3.30.360.10 99 181 2.0E-64 T 14-10-2018 Amico_0012 145ff45986e15320883770a130953a34 220 Pfam PF01113 Dihydrodipicolinate reductase, N-terminus 1 96 2.0E-12 T 14-10-2018 IPR000846 Dihydrodipicolinate reductase, N-terminal GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0012 145ff45986e15320883770a130953a34 220 ProSitePatterns PS01298 Dihydrodipicolinate reductase signature. 120 137 - T 14-10-2018 IPR022664 Dihydrodipicolinate reductase, conserved site GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0012 145ff45986e15320883770a130953a34 220 Hamap MF_00102 4-hydroxy-tetrahydrodipicolinate reductase [dapB]. 1 211 26.446 T 14-10-2018 IPR023940 Dihydrodipicolinate reductase GO:0008839|GO:0009089|GO:0055114 KEGG: 00261+1.17.1.8|KEGG: 00300+1.17.1.8|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097 Amico_0012 145ff45986e15320883770a130953a34 220 SUPERFAMILY SSF55347 98 182 9.59E-23 T 14-10-2018 Amico_1406 ab805162eac7ed6cd55668d44a6ad512 144 Pfam PF02631 RecX family 28 138 1.7E-17 T 14-10-2018 IPR003783 Regulatory protein RecX GO:0006282 Amico_1406 ab805162eac7ed6cd55668d44a6ad512 144 Gene3D G3DSA:1.10.10.10 52 94 9.9E-8 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0722 09340cf92fddf1199c19c248f56f61a2 79 TIGRFAM TIGR00105 L31: ribosomal protein bL31 1 67 1.3E-27 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0722 09340cf92fddf1199c19c248f56f61a2 79 Pfam PF01197 Ribosomal protein L31 1 66 2.2E-29 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0722 09340cf92fddf1199c19c248f56f61a2 79 Gene3D G3DSA:2.30.170.50 1 69 8.1E-29 T 14-10-2018 Amico_0722 09340cf92fddf1199c19c248f56f61a2 79 SUPERFAMILY SSF143800 1 68 9.42E-23 T 14-10-2018 IPR034704 L28p-like Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0722 09340cf92fddf1199c19c248f56f61a2 79 Hamap MF_00501 50S ribosomal protein L31 [rpmE]. 1 69 26.247 T 14-10-2018 IPR027491 Ribosomal protein L31 type A GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0722 09340cf92fddf1199c19c248f56f61a2 79 PRINTS PR01249 Ribosomal protein L31 signature 2 19 1.4E-11 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0722 09340cf92fddf1199c19c248f56f61a2 79 PRINTS PR01249 Ribosomal protein L31 signature 30 45 1.4E-11 T 14-10-2018 IPR002150 Ribosomal protein L31 GO:0003735|GO:0005622|GO:0005840|GO:0006412 Amico_0017 e8170f11000e40dd2108d3cff165ec4a 281 Pfam PF00037 4Fe-4S binding domain 90 113 4.4E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_0017 e8170f11000e40dd2108d3cff165ec4a 281 SUPERFAMILY SSF54862 55 116 1.97E-16 T 14-10-2018 Amico_0017 e8170f11000e40dd2108d3cff165ec4a 281 SUPERFAMILY SSF52540 1 280 1.52E-26 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0017 e8170f11000e40dd2108d3cff165ec4a 281 Pfam PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain 4 258 5.2E-17 T 14-10-2018 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain Amico_0017 e8170f11000e40dd2108d3cff165ec4a 281 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 97 108 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_0017 e8170f11000e40dd2108d3cff165ec4a 281 Gene3D G3DSA:3.30.70.20 62 110 3.2E-10 T 14-10-2018 Amico_0220 5933461d378b1f20e201a234d1bc355d 184 Hamap MF_01521 Probable manganese efflux pump MntP [mntP]. 1 182 21.767 T 14-10-2018 IPR022929 Putative manganese efflux pump MntP Amico_0220 5933461d378b1f20e201a234d1bc355d 184 Pfam PF02659 Putative manganese efflux pump 35 179 3.2E-43 T 14-10-2018 IPR003810 Putative manganese efflux pump Amico_0833 8c5e0ed2f497aa46c82385bade4730b5 298 Pfam PF14527 WhiA LAGLIDADG-like domain 115 205 2.2E-9 T 14-10-2018 IPR039518 WhiA, LAGLIDADG-like domain Amico_0833 8c5e0ed2f497aa46c82385bade4730b5 298 Pfam PF02650 WhiA C-terminal HTH domain 208 291 4.6E-27 T 14-10-2018 IPR023054 Sporulation regulator WhiA, C-terminal Amico_0833 8c5e0ed2f497aa46c82385bade4730b5 298 Gene3D G3DSA:1.10.10.10 203 295 3.4E-23 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0833 8c5e0ed2f497aa46c82385bade4730b5 298 TIGRFAM TIGR00647 DNA_bind_WhiA: DNA-binding protein WhiA 114 292 6.9E-32 T 14-10-2018 IPR033981 Sporulation regulator WhiA-like Amico_0833 8c5e0ed2f497aa46c82385bade4730b5 298 SUPERFAMILY SSF55608 107 206 8.5E-5 T 14-10-2018 IPR027434 Homing endonuclease Amico_0112 1ff2ac042b542171101db924befe5961 127 Pfam PF07009 NusG domain II 12 116 2.4E-28 T 14-10-2018 IPR024045 NusG, domain 2 Amico_0112 1ff2ac042b542171101db924befe5961 127 Gene3D G3DSA:2.60.320.10 28 120 1.9E-25 T 14-10-2018 IPR038690 NusG, domain 2 superfamily Amico_1678 c9d0a67a0111757fa9fb9ceafebb040c 269 Gene3D G3DSA:3.40.190.10 103 225 8.2E-88 T 14-10-2018 Amico_1678 c9d0a67a0111757fa9fb9ceafebb040c 269 Pfam PF12849 PBP superfamily domain 22 255 6.9E-41 T 14-10-2018 IPR024370 PBP domain Amico_1678 c9d0a67a0111757fa9fb9ceafebb040c 269 TIGRFAM TIGR02136 ptsS_2: phosphate binding protein 10 268 2.3E-85 T 14-10-2018 IPR011862 Phosphate binding protein GO:0042301 Amico_1678 c9d0a67a0111757fa9fb9ceafebb040c 269 Gene3D G3DSA:3.40.190.10 27 268 8.2E-88 T 14-10-2018 Amico_1678 c9d0a67a0111757fa9fb9ceafebb040c 269 SUPERFAMILY SSF53850 25 268 3.88E-76 T 14-10-2018 Amico_1191 68614997eb41835aef02d53bd39efdad 150 TIGRFAM TIGR00481 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family 20 145 1.5E-37 T 14-10-2018 IPR005247 YbhB/YbcL Amico_1191 68614997eb41835aef02d53bd39efdad 150 SUPERFAMILY SSF49777 1 148 1.13E-41 T 14-10-2018 IPR036610 PEBP-like superfamily Amico_1191 68614997eb41835aef02d53bd39efdad 150 Gene3D G3DSA:3.90.280.10 1 150 1.7E-49 T 14-10-2018 IPR036610 PEBP-like superfamily Amico_1191 68614997eb41835aef02d53bd39efdad 150 Pfam PF01161 Phosphatidylethanolamine-binding protein 14 148 1.4E-33 T 14-10-2018 IPR008914 Phosphatidylethanolamine-binding protein Amico_1317 0463a5809d07380992ad3887020f4210 306 SUPERFAMILY SSF51621 2 289 1.97E-89 T 14-10-2018 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily GO:0003824 Amico_1317 0463a5809d07380992ad3887020f4210 306 Pfam PF13714 Phosphoenolpyruvate phosphomutase 8 253 1.5E-47 T 14-10-2018 Amico_1317 0463a5809d07380992ad3887020f4210 306 ProSitePatterns PS00161 Isocitrate lyase signature. 117 122 - T 14-10-2018 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site GO:0003824 Amico_1317 0463a5809d07380992ad3887020f4210 306 Gene3D G3DSA:3.20.20.60 1 295 9.7E-100 T 14-10-2018 Amico_1724 3d6a1f0076fdbfaa140e3e48ca35f860 73 SUPERFAMILY SSF47336 8 71 7.33E-7 T 14-10-2018 IPR036736 ACP-like superfamily Amico_1724 3d6a1f0076fdbfaa140e3e48ca35f860 73 Gene3D G3DSA:1.10.1200.10 1 73 8.6E-11 T 14-10-2018 IPR036736 ACP-like superfamily Amico_0387 1a7e98d8f265f037d19b569bc70d049e 389 Pfam PF03793 PASTA domain 36 95 9.4E-12 T 14-10-2018 IPR005543 PASTA domain Amico_0387 1a7e98d8f265f037d19b569bc70d049e 389 Pfam PF03793 PASTA domain 173 234 4.2E-7 T 14-10-2018 IPR005543 PASTA domain Amico_0387 1a7e98d8f265f037d19b569bc70d049e 389 Pfam PF03793 PASTA domain 101 163 6.9E-10 T 14-10-2018 IPR005543 PASTA domain Amico_0387 1a7e98d8f265f037d19b569bc70d049e 389 SMART SM00740 30 95 1.4E-13 T 14-10-2018 IPR005543 PASTA domain Amico_0387 1a7e98d8f265f037d19b569bc70d049e 389 SMART SM00740 96 163 1.3E-7 T 14-10-2018 IPR005543 PASTA domain Amico_0387 1a7e98d8f265f037d19b569bc70d049e 389 SMART SM00740 168 235 0.049 T 14-10-2018 IPR005543 PASTA domain Amico_0387 1a7e98d8f265f037d19b569bc70d049e 389 Gene3D G3DSA:3.30.10.20 34 96 1.5E-11 T 14-10-2018 Amico_0387 1a7e98d8f265f037d19b569bc70d049e 389 Gene3D G3DSA:3.30.10.20 169 235 1.5E-10 T 14-10-2018 Amico_0387 1a7e98d8f265f037d19b569bc70d049e 389 Gene3D G3DSA:3.30.10.20 98 165 8.9E-13 T 14-10-2018 Amico_0387 1a7e98d8f265f037d19b569bc70d049e 389 SUPERFAMILY SSF54184 35 94 2.35E-5 T 14-10-2018 Amico_0390 679d4c63ed844289c69c2a9da38161b6 429 Gene3D G3DSA:3.80.30.20 129 363 5.1E-72 T 14-10-2018 IPR023404 Radical SAM, alpha/beta horseshoe Amico_0390 679d4c63ed844289c69c2a9da38161b6 429 Pfam PF04055 Radical SAM superfamily 136 306 8.4E-19 T 14-10-2018 IPR007197 Radical SAM GO:0003824|GO:0051536 Amico_0390 679d4c63ed844289c69c2a9da38161b6 429 Hamap MF_01865 Ribosomal protein S12 methylthiotransferase RimO [rimO]. 1 426 54.545 T 14-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Amico_0390 679d4c63ed844289c69c2a9da38161b6 429 SMART SM00729 130 349 2.0E-38 T 14-10-2018 IPR006638 Elp3/MiaB/NifB GO:0003824|GO:0051536 Amico_0390 679d4c63ed844289c69c2a9da38161b6 429 SUPERFAMILY SSF102114 127 357 2.75E-50 T 14-10-2018 Amico_0390 679d4c63ed844289c69c2a9da38161b6 429 Pfam PF00919 Uncharacterized protein family UPF0004 3 99 2.9E-25 T 14-10-2018 IPR013848 Methylthiotransferase, N-terminal GO:0051539 Amico_0390 679d4c63ed844289c69c2a9da38161b6 429 Gene3D G3DSA:3.40.50.12160 1 124 1.1E-36 T 14-10-2018 IPR038135 Methylthiotransferase, N-terminal domain superfamily Amico_0390 679d4c63ed844289c69c2a9da38161b6 429 Gene3D G3DSA:2.40.50.140 364 429 6.0E-18 T 14-10-2018 Amico_0390 679d4c63ed844289c69c2a9da38161b6 429 TIGRFAM TIGR00089 TIGR00089: radical SAM methylthiotransferase, MiaB/RimO family 3 424 4.7E-112 T 14-10-2018 IPR005839 Methylthiotransferase GO:0006400|GO:0016740|GO:0051539 Amico_0390 679d4c63ed844289c69c2a9da38161b6 429 ProSitePatterns PS01278 Methylthiotransferase radical SAM domain signature. 134 154 - T 14-10-2018 IPR020612 Methylthiotransferase, conserved site GO:0051539 Amico_0390 679d4c63ed844289c69c2a9da38161b6 429 TIGRFAM TIGR01125 TIGR01125: ribosomal protein S12 methylthiotransferase RimO 3 424 2.1E-131 T 14-10-2018 IPR005840 Ribosomal protein S12 methylthiotransferase RimO GO:0005737|GO:0016740|GO:0018339|GO:0051539 Amico_0495 3fe0a5b62cc4ab63cd00a258d8c2a5cd 344 Pfam PF00149 Calcineurin-like phosphoesterase 3 220 1.8E-5 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Amico_0495 3fe0a5b62cc4ab63cd00a258d8c2a5cd 344 SUPERFAMILY SSF56300 1 225 4.51E-11 T 14-10-2018 Amico_1315 729216699c3eccbb82ce63df6568fbdd 388 SUPERFAMILY SSF52922 253 375 3.0E-34 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1315 729216699c3eccbb82ce63df6568fbdd 388 Gene3D G3DSA:3.40.50.970 1 252 6.4E-88 T 14-10-2018 Amico_1315 729216699c3eccbb82ce63df6568fbdd 388 Pfam PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg 16 232 1.9E-69 T 14-10-2018 IPR002880 Pyruvate flavodoxin/ferredoxin oxidoreductase, N-terminal GO:0016491|GO:0055114 Amico_1315 729216699c3eccbb82ce63df6568fbdd 388 SUPERFAMILY SSF52518 5 251 1.01E-60 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_1315 729216699c3eccbb82ce63df6568fbdd 388 Gene3D G3DSA:3.40.50.920 253 387 7.4E-44 T 14-10-2018 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II GO:0003824 Amico_1315 729216699c3eccbb82ce63df6568fbdd 388 Pfam PF17147 Pyruvate:ferredoxin oxidoreductase core domain II 262 363 1.9E-29 T 14-10-2018 IPR033412 Pyruvate:ferredoxin oxidoreductase, core domain II Amico_0578 7fbcec7c06c6b55c5b2c4b0b2e0acd54 518 Hamap MF_02078 Probable lipid II flippase MurJ [murJ]. 8 464 17.75 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Amico_0578 7fbcec7c06c6b55c5b2c4b0b2e0acd54 518 PIRSF PIRSF002869 3 514 1.9E-134 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Amico_0578 7fbcec7c06c6b55c5b2c4b0b2e0acd54 518 Pfam PF03023 MviN-like protein 34 466 6.2E-106 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Amico_0578 7fbcec7c06c6b55c5b2c4b0b2e0acd54 518 TIGRFAM TIGR01695 murJ_mviN: murein biosynthesis integral membrane protein MurJ 9 498 1.0E-115 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Amico_0578 7fbcec7c06c6b55c5b2c4b0b2e0acd54 518 PRINTS PR01806 Virulence factor MviN signature 38 57 5.4E-46 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Amico_0578 7fbcec7c06c6b55c5b2c4b0b2e0acd54 518 PRINTS PR01806 Virulence factor MviN signature 160 181 5.4E-46 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Amico_0578 7fbcec7c06c6b55c5b2c4b0b2e0acd54 518 PRINTS PR01806 Virulence factor MviN signature 410 427 5.4E-46 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Amico_0578 7fbcec7c06c6b55c5b2c4b0b2e0acd54 518 PRINTS PR01806 Virulence factor MviN signature 261 287 5.4E-46 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Amico_0578 7fbcec7c06c6b55c5b2c4b0b2e0acd54 518 PRINTS PR01806 Virulence factor MviN signature 358 377 5.4E-46 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Amico_0578 7fbcec7c06c6b55c5b2c4b0b2e0acd54 518 PRINTS PR01806 Virulence factor MviN signature 57 73 5.4E-46 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Amico_0578 7fbcec7c06c6b55c5b2c4b0b2e0acd54 518 PRINTS PR01806 Virulence factor MviN signature 136 160 5.4E-46 T 14-10-2018 IPR004268 Peptidoglycan biosynthesis protein MurJ Amico_0444 eefd741d74b918dd6022580a60f5dc0e 646 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 132 567 8.1E-93 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_0444 eefd741d74b918dd6022580a60f5dc0e 646 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 34 640 5.3E-206 T 14-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ Amico_0610 9a1c9386e431a804b4f30443ceec0f5d 219 Pfam PF10105 Uncharacterized protein conserved in bacteria (DUF2344) 3 123 2.3E-17 T 14-10-2018 IPR018768 Domain of unknown function DUF2344 Amico_0723 f7b78e2cda608726e3e05a3a0b9b5216 231 Pfam PF02511 Thymidylate synthase complementing protein 6 195 2.7E-68 T 14-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 Amico_0723 f7b78e2cda608726e3e05a3a0b9b5216 231 SUPERFAMILY SSF69796 3 206 2.22E-62 T 14-10-2018 IPR036098 Thymidylate synthase ThyX superfamily GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 Amico_0723 f7b78e2cda608726e3e05a3a0b9b5216 231 Gene3D G3DSA:3.30.1360.170 2 203 7.2E-67 T 14-10-2018 Amico_0723 f7b78e2cda608726e3e05a3a0b9b5216 231 Hamap MF_01408 Flavin-dependent thymidylate synthase [thyX]. 1 209 30.797 T 14-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 Amico_0723 f7b78e2cda608726e3e05a3a0b9b5216 231 TIGRFAM TIGR02170 thyX: thymidylate synthase, flavin-dependent 5 199 3.5E-57 T 14-10-2018 IPR003669 Thymidylate synthase ThyX GO:0006231|GO:0050660|GO:0050797 KEGG: 00240+2.1.1.148|KEGG: 00670+2.1.1.148|MetaCyc: PWY-6545 Amico_1776 c2d08d2053aeb4a04010366140358977 152 Hamap MF_00115 Large-conductance mechanosensitive channel [mscL]. 3 144 21.939 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Amico_1776 c2d08d2053aeb4a04010366140358977 152 SUPERFAMILY SSF81330 13 135 2.75E-34 T 14-10-2018 IPR036019 Gated mechanosensitive channel Amico_1776 c2d08d2053aeb4a04010366140358977 152 TIGRFAM TIGR00220 mscL: large conductance mechanosensitive channel protein 3 115 2.0E-33 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Amico_1776 c2d08d2053aeb4a04010366140358977 152 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 95 103 1.7E-11 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Amico_1776 c2d08d2053aeb4a04010366140358977 152 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 6 20 1.7E-11 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Amico_1776 c2d08d2053aeb4a04010366140358977 152 PRINTS PR01264 Bacterial mechano-sensitive ion channel signature 104 113 1.7E-11 T 14-10-2018 IPR001185 Large-conductance mechanosensitive channel GO:0008381|GO:0016021|GO:0034220 Amico_1776 c2d08d2053aeb4a04010366140358977 152 Pfam PF01741 Large-conductance mechanosensitive channel, MscL 4 136 3.4E-38 T 14-10-2018 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L Amico_1776 c2d08d2053aeb4a04010366140358977 152 Gene3D G3DSA:1.10.1200.120 3 140 4.0E-35 T 14-10-2018 IPR036019 Gated mechanosensitive channel Amico_0869 d68615fcbeb3e1abe4887dffdcb4cd90 135 Hamap MF_00476 Nickel-responsive regulator [nikR]. 4 134 25.721 T 14-10-2018 IPR022988 Nickel-responsive transcriptional regulator NikR GO:0003677|GO:0006355|GO:0010045|GO:0016151 Amico_0869 d68615fcbeb3e1abe4887dffdcb4cd90 135 SUPERFAMILY SSF47598 3 50 4.45E-8 T 14-10-2018 IPR010985 Ribbon-helix-helix GO:0006355 Amico_0869 d68615fcbeb3e1abe4887dffdcb4cd90 135 SUPERFAMILY SSF55021 54 131 5.72E-25 T 14-10-2018 Amico_0869 d68615fcbeb3e1abe4887dffdcb4cd90 135 Gene3D G3DSA:1.10.1220.10 11 48 4.9E-13 T 14-10-2018 IPR013321 Arc-type ribbon-helix-helix GO:0006355 Amico_0869 d68615fcbeb3e1abe4887dffdcb4cd90 135 Pfam PF08753 NikR C terminal nickel binding domain 57 128 1.2E-29 T 14-10-2018 IPR014864 Transcription factor, NikR, nickel binding C-terminal Amico_0869 d68615fcbeb3e1abe4887dffdcb4cd90 135 Pfam PF01402 Ribbon-helix-helix protein, copG family 6 41 3.5E-6 T 14-10-2018 IPR002145 Ribbon-helix-helix protein, CopG GO:0006355 Amico_0869 d68615fcbeb3e1abe4887dffdcb4cd90 135 Gene3D G3DSA:3.30.70.1150 53 135 5.9E-30 T 14-10-2018 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal Amico_0131 ae0e8c972f34c83cedda34ddf0a9c09f 334 PIRSF PIRSF006470 7 332 4.6E-70 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_0131 ae0e8c972f34c83cedda34ddf0a9c09f 334 Gene3D G3DSA:3.40.190.170 33 332 1.1E-82 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_0131 ae0e8c972f34c83cedda34ddf0a9c09f 334 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 43 313 1.2E-67 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_0131 ae0e8c972f34c83cedda34ddf0a9c09f 334 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 42 285 2.1E-59 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_0570 ed7a29a9c20f98f1c533a9cb086cc5e7 446 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 45 64 8.1E-14 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0570 ed7a29a9c20f98f1c533a9cb086cc5e7 446 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 90 116 8.1E-14 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0570 ed7a29a9c20f98f1c533a9cb086cc5e7 446 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 16 37 8.1E-14 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0570 ed7a29a9c20f98f1c533a9cb086cc5e7 446 Pfam PF00209 Sodium:neurotransmitter symporter family 145 443 1.1E-38 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0570 ed7a29a9c20f98f1c533a9cb086cc5e7 446 Pfam PF00209 Sodium:neurotransmitter symporter family 8 125 2.6E-29 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0570 ed7a29a9c20f98f1c533a9cb086cc5e7 446 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 32 46 - T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0570 ed7a29a9c20f98f1c533a9cb086cc5e7 446 SUPERFAMILY SSF161070 8 445 1.03E-140 T 14-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 Amico_0497 52be91a0f46b03ff6857c904315d24e7 359 Gene3D G3DSA:2.40.100.10 181 318 1.0E-46 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily Amico_0497 52be91a0f46b03ff6857c904315d24e7 359 SUPERFAMILY SSF50891 184 298 2.43E-10 T 14-10-2018 IPR029000 Cyclophilin-like domain superfamily Amico_0497 52be91a0f46b03ff6857c904315d24e7 359 Pfam PF02626 Carboxyltransferase domain, subdomain A and B 26 291 8.5E-83 T 14-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Amico_0497 52be91a0f46b03ff6857c904315d24e7 359 SMART SM00797 24 308 2.9E-113 T 14-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Amico_0497 52be91a0f46b03ff6857c904315d24e7 359 TIGRFAM TIGR00724 urea_amlyse_rel: biotin-dependent carboxylase uncharacterized domain 3 315 4.3E-86 T 14-10-2018 IPR003778 Carboxyltransferase domain, subdomain A and B Amico_1011 d23f504840203d9afcd74862ed05479c 310 Pfam PF01551 Peptidase family M23 194 288 2.0E-26 T 14-10-2018 IPR016047 Peptidase M23 Amico_1011 d23f504840203d9afcd74862ed05479c 310 SUPERFAMILY SSF51261 110 291 1.26E-47 T 14-10-2018 IPR011055 Duplicated hybrid motif Amico_1011 d23f504840203d9afcd74862ed05479c 310 Gene3D G3DSA:2.70.70.10 140 295 2.2E-45 T 14-10-2018 IPR011055 Duplicated hybrid motif Amico_1557 2d137d63fa695841b5608ecf78428483 122 Gene3D G3DSA:3.40.30.10 28 121 4.0E-22 T 14-10-2018 Amico_1557 2d137d63fa695841b5608ecf78428483 122 SUPERFAMILY SSF52833 27 120 6.71E-21 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Amico_1557 2d137d63fa695841b5608ecf78428483 122 Pfam PF01257 Thioredoxin-like [2Fe-2S] ferredoxin 24 105 8.3E-7 T 14-10-2018 Amico_1826 f1788fd63206e4dbd7409796ebadd949 143 Gene3D G3DSA:3.10.50.40 2 143 2.4E-50 T 14-10-2018 Amico_1826 f1788fd63206e4dbd7409796ebadd949 143 Pfam PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase 4 138 2.7E-24 T 14-10-2018 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain Amico_1826 f1788fd63206e4dbd7409796ebadd949 143 SUPERFAMILY SSF54534 3 141 3.34E-40 T 14-10-2018 Amico_0259 80f9d249b6d4e93b234c95715bea064a 314 Gene3D G3DSA:3.40.190.10 27 300 2.0E-79 T 14-10-2018 Amico_0259 80f9d249b6d4e93b234c95715bea064a 314 SUPERFAMILY SSF53850 30 304 4.11E-33 T 14-10-2018 Amico_0259 80f9d249b6d4e93b234c95715bea064a 314 Pfam PF09084 NMT1/THI5 like 37 249 2.2E-55 T 14-10-2018 IPR015168 SsuA/THI5-like Amico_0259 80f9d249b6d4e93b234c95715bea064a 314 Gene3D G3DSA:3.40.190.10 109 207 2.0E-79 T 14-10-2018 Amico_1548 14448fdf8f0d6994b70b44f064508d09 166 Pfam PF01951 Archease protein family (MTH1598/TM1083) 32 156 1.5E-19 T 14-10-2018 IPR023572 Archease domain Reactome: R-HSA-6784531 Amico_1548 14448fdf8f0d6994b70b44f064508d09 166 SUPERFAMILY SSF69819 29 158 8.24E-20 T 14-10-2018 IPR036820 Archease domain superfamily Reactome: R-HSA-6784531 Amico_1548 14448fdf8f0d6994b70b44f064508d09 166 ProDom PD012969 UPF0211 RIKEN CDNA ENRICHED MALE FULL-LENGTH LIBRARY ZBTB8OS ADULT C43H8.1 36 155 6.0E-10 T 14-10-2018 IPR023572 Archease domain Reactome: R-HSA-6784531 Amico_1548 14448fdf8f0d6994b70b44f064508d09 166 Gene3D G3DSA:3.55.10.10 30 166 6.0E-24 T 14-10-2018 IPR036820 Archease domain superfamily Reactome: R-HSA-6784531 Amico_0970 08c250dbb194a1a7339123b68c43b43c 130 Pfam PF02033 Ribosome-binding factor A 5 107 1.2E-25 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Amico_0970 08c250dbb194a1a7339123b68c43b43c 130 SUPERFAMILY SSF89919 2 110 4.19E-28 T 14-10-2018 IPR023799 Ribosome-binding factor A domain superfamily Amico_0970 08c250dbb194a1a7339123b68c43b43c 130 ProDom PD007327 FACTOR A RIBOSOME-BINDING PROCESSING RRNA 3D-STRUCTURE RIBOSOMAL-BINDING PRECURSOR A RBFA 7 94 1.0E-12 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Amico_0970 08c250dbb194a1a7339123b68c43b43c 130 TIGRFAM TIGR00082 rbfA: ribosome-binding factor A 1 112 6.2E-29 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Amico_0970 08c250dbb194a1a7339123b68c43b43c 130 Gene3D G3DSA:3.30.300.20 1 116 4.6E-34 T 14-10-2018 IPR015946 K homology domain-like, alpha/beta Amico_0970 08c250dbb194a1a7339123b68c43b43c 130 Hamap MF_00003 Ribosome-binding factor A [rbfA]. 4 107 23.618 T 14-10-2018 IPR000238 Ribosome-binding factor A GO:0006364 Amico_0970 08c250dbb194a1a7339123b68c43b43c 130 ProSitePatterns PS01319 Ribosome-binding factor A signature. 73 94 - T 14-10-2018 IPR020053 Ribosome-binding factor A, conserved site GO:0006364 Amico_0210 478f4cabd82b77f7af1398f8ced56c08 445 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 433 1.3E-89 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0210 478f4cabd82b77f7af1398f8ced56c08 445 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 10 427 1.7E-80 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_0210 478f4cabd82b77f7af1398f8ced56c08 445 PIRSF PIRSF006066 2 438 1.2E-97 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1306 78f4351b9f0635b82934dac833189e87 160 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 155 9.4E-38 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1561 8c85d5b44ade0063ff13a3499bd85767 276 Gene3D G3DSA:3.40.190.10 108 224 9.9E-93 T 14-10-2018 Amico_1561 8c85d5b44ade0063ff13a3499bd85767 276 Pfam PF12849 PBP superfamily domain 32 255 1.4E-27 T 14-10-2018 IPR024370 PBP domain Amico_1561 8c85d5b44ade0063ff13a3499bd85767 276 Gene3D G3DSA:3.40.190.10 33 261 9.9E-93 T 14-10-2018 Amico_1561 8c85d5b44ade0063ff13a3499bd85767 276 SUPERFAMILY SSF53850 31 263 6.26E-28 T 14-10-2018 Amico_0914 25e98c8cf2dfaab847839ef53f8d6e88 137 Pfam PF01989 Protein of unknown function DUF126 27 106 2.5E-24 T 14-10-2018 IPR002840 Aconitase X swivel domain, putative Amico_0914 25e98c8cf2dfaab847839ef53f8d6e88 137 SUPERFAMILY SSF52016 5 135 5.96E-32 T 14-10-2018 Amico_0914 25e98c8cf2dfaab847839ef53f8d6e88 137 Gene3D G3DSA:3.50.30.10 4 137 5.0E-38 T 14-10-2018 Amico_1502 363ddb88692e35ff4437c646ca670f92 267 PIRSF PIRSF000456 1 262 8.2E-89 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Amico_1502 363ddb88692e35ff4437c646ca670f92 267 SUPERFAMILY SSF51161 3 233 4.53E-63 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Amico_1502 363ddb88692e35ff4437c646ca670f92 267 TIGRFAM TIGR01852 lipid_A_lpxA: acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase 5 254 3.7E-85 T 14-10-2018 IPR010137 Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase GO:0008610|GO:0008780 KEGG: 00540+2.3.1.129 Amico_1502 363ddb88692e35ff4437c646ca670f92 267 Gene3D G3DSA:2.160.10.10 1 192 2.7E-48 T 14-10-2018 Amico_1502 363ddb88692e35ff4437c646ca670f92 267 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 105 136 1.0E-7 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_1502 363ddb88692e35ff4437c646ca670f92 267 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 33 66 9.7E-6 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_1502 363ddb88692e35ff4437c646ca670f92 267 Gene3D G3DSA:1.20.1180.10 193 256 1.0E-14 T 14-10-2018 IPR037157 UDP-N-acetylglucosamine O-acyltransferase, C-terminal domain superfamily KEGG: 00540+2.3.1.129 Amico_1502 363ddb88692e35ff4437c646ca670f92 267 Pfam PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 176 254 2.1E-22 T 14-10-2018 IPR029098 UDP N-acetylglucosamine O-acyltransferase, C-terminal KEGG: 00540+2.3.1.129 Amico_0802 d9c1499c56826a18db43bea64ea50989 668 Pfam PF01496 V-type ATPase 116kDa subunit family 570 655 1.9E-11 T 14-10-2018 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0802 d9c1499c56826a18db43bea64ea50989 668 Pfam PF01496 V-type ATPase 116kDa subunit family 109 409 2.3E-17 T 14-10-2018 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0802 d9c1499c56826a18db43bea64ea50989 668 Gene3D G3DSA:3.30.70.2750 142 221 1.8E-10 T 14-10-2018 Amico_0802 d9c1499c56826a18db43bea64ea50989 668 Gene3D G3DSA:3.30.70.2170 17 311 1.8E-10 T 14-10-2018 Amico_0802 d9c1499c56826a18db43bea64ea50989 668 Gene3D G3DSA:1.20.1460.20 41 288 1.8E-10 T 14-10-2018 Amico_1175 022d7009fde35bc764623dfc6ae12458 260 TIGRFAM TIGR00087 surE: 5'/3'-nucleotidase SurE 2 242 9.1E-70 T 14-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Amico_1175 022d7009fde35bc764623dfc6ae12458 260 SUPERFAMILY SSF64167 2 252 3.14E-77 T 14-10-2018 Amico_1175 022d7009fde35bc764623dfc6ae12458 260 Pfam PF01975 Survival protein SurE 4 192 7.8E-57 T 14-10-2018 IPR002828 Survival protein SurE-like phosphatase/nucleotidase GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Amico_1175 022d7009fde35bc764623dfc6ae12458 260 Hamap MF_00060 5'/3'-nucleotidase SurE [surE]. 1 259 36.415 T 14-10-2018 IPR030048 Survival protein SurE GO:0008252 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Amico_1175 022d7009fde35bc764623dfc6ae12458 260 Gene3D G3DSA:3.40.1210.10 1 258 2.4E-81 T 14-10-2018 IPR036523 SurE-like phosphatase/nucleotidase superfamily GO:0016787 KEGG: 00230+3.1.3.5|KEGG: 00240+3.1.3.5|KEGG: 00760+3.1.3.5|MetaCyc: PWY-5381|MetaCyc: PWY-5695|MetaCyc: PWY-6596|MetaCyc: PWY-6606|MetaCyc: PWY-6607|MetaCyc: PWY-6608|MetaCyc: PWY-7185|MetaCyc: PWY-7821 Amico_1383 8b246a4a710c58dffea52a19c68c03b6 251 Gene3D G3DSA:3.40.190.10 117 209 1.6E-65 T 14-10-2018 Amico_1383 8b246a4a710c58dffea52a19c68c03b6 251 Pfam PF00497 Bacterial extracellular solute-binding proteins, family 3 31 250 3.7E-57 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_1383 8b246a4a710c58dffea52a19c68c03b6 251 ProSitePatterns PS01039 Bacterial extracellular solute-binding proteins, family 3 signature. 53 66 - T 14-10-2018 IPR018313 Solute-binding protein family 3, conserved site Amico_1383 8b246a4a710c58dffea52a19c68c03b6 251 Gene3D G3DSA:3.40.190.10 33 248 1.6E-65 T 14-10-2018 Amico_1383 8b246a4a710c58dffea52a19c68c03b6 251 SMART SM00062 30 251 5.5E-59 T 14-10-2018 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF Amico_1383 8b246a4a710c58dffea52a19c68c03b6 251 SUPERFAMILY SSF53850 3 249 8.69E-63 T 14-10-2018 Amico_1383 8b246a4a710c58dffea52a19c68c03b6 251 SMART SM00079 30 251 0.0013 T 14-10-2018 IPR001320 Ionotropic glutamate receptor GO:0004970|GO:0016020 Amico_1056 0f11ff70630d140adec98657dd7478aa 324 Gene3D G3DSA:3.30.1330.10 1 131 2.4E-32 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Amico_1056 0f11ff70630d140adec98657dd7478aa 324 Pfam PF00586 AIR synthase related protein, N-terminal domain 20 127 3.2E-15 T 14-10-2018 IPR016188 PurM-like, N-terminal domain Amico_1056 0f11ff70630d140adec98657dd7478aa 324 Pfam PF02769 AIR synthase related protein, C-terminal domain 140 318 3.9E-19 T 14-10-2018 IPR010918 PurM-like, C-terminal domain Amico_1056 0f11ff70630d140adec98657dd7478aa 324 TIGRFAM TIGR00476 selD: selenide, water dikinase 8 289 2.1E-89 T 14-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Amico_1056 0f11ff70630d140adec98657dd7478aa 324 Gene3D G3DSA:3.90.650.10 137 322 3.0E-45 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Amico_1056 0f11ff70630d140adec98657dd7478aa 324 PIRSF PIRSF036407 1 324 1.7E-90 T 14-10-2018 IPR004536 Selenophosphate synthetase GO:0005524 KEGG: 00450+2.7.9.3|MetaCyc: PWY-6281 Amico_1056 0f11ff70630d140adec98657dd7478aa 324 SUPERFAMILY SSF56042 140 316 4.64E-39 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Amico_1056 0f11ff70630d140adec98657dd7478aa 324 SUPERFAMILY SSF55326 17 130 6.58E-29 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Amico_0435 1b91272efe8677392435892b4f7fb450 325 TIGRFAM TIGR01509 HAD-SF-IA-v3: HAD hydrolase, family IA, variant 3 17 175 3.3E-9 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Amico_0435 1b91272efe8677392435892b4f7fb450 325 Pfam PF13419 Haloacid dehalogenase-like hydrolase 58 175 2.0E-14 T 14-10-2018 Amico_0435 1b91272efe8677392435892b4f7fb450 325 SUPERFAMILY SSF56784 16 200 1.79E-31 T 14-10-2018 IPR036412 HAD-like superfamily Amico_0435 1b91272efe8677392435892b4f7fb450 325 TIGRFAM TIGR01549 HAD-SF-IA-v1: HAD hydrolase, family IA, variant 1 17 169 1.1E-7 T 14-10-2018 IPR006439 HAD hydrolase, subfamily IA GO:0016787 Amico_0435 1b91272efe8677392435892b4f7fb450 325 Gene3D G3DSA:1.10.260.80 27 77 1.3E-44 T 14-10-2018 Amico_0435 1b91272efe8677392435892b4f7fb450 325 Gene3D G3DSA:3.40.50.1000 17 188 1.3E-44 T 14-10-2018 IPR023214 HAD superfamily Amico_0991 62981acd611c84e1b8b6008cf3a1c4f4 635 Gene3D G3DSA:1.20.1460.20 48 285 1.2E-11 T 14-10-2018 Amico_0991 62981acd611c84e1b8b6008cf3a1c4f4 635 Gene3D G3DSA:3.30.70.2170 6 300 1.2E-11 T 14-10-2018 Amico_0991 62981acd611c84e1b8b6008cf3a1c4f4 635 Gene3D G3DSA:3.30.70.2750 137 217 1.2E-11 T 14-10-2018 Amico_0991 62981acd611c84e1b8b6008cf3a1c4f4 635 Pfam PF01496 V-type ATPase 116kDa subunit family 287 428 1.5E-11 T 14-10-2018 IPR002490 V-type ATPase, V0 complex, 116kDa subunit family GO:0015078|GO:0015991|GO:0033179 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0231 fafd8694b9b4deb56083e3dfdab5b58c 1124 Pfam PF13502 AsmA-like C-terminal region 624 706 2.1E-5 T 14-10-2018 IPR032712 AsmA-like, C-terminal Amico_0231 fafd8694b9b4deb56083e3dfdab5b58c 1124 Pfam PF13502 AsmA-like C-terminal region 830 1060 5.6E-9 T 14-10-2018 IPR032712 AsmA-like, C-terminal Amico_0180 2c5ba6eba55d9b533d0423cd2be5caea 538 Gene3D G3DSA:3.60.60.10 27 229 2.8E-5 T 14-10-2018 Amico_0180 2c5ba6eba55d9b533d0423cd2be5caea 538 Pfam PF03577 Peptidase family C69 27 471 1.5E-63 T 14-10-2018 IPR005322 Peptidase C69, dipeptidase A GO:0006508|GO:0016805 Amico_1682 850bb2aab4e434d889a987d092b7d2d8 229 TIGRFAM TIGR02135 phoU_full: phosphate transport system regulatory protein PhoU 9 217 1.3E-56 T 14-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Amico_1682 850bb2aab4e434d889a987d092b7d2d8 229 PIRSF PIRSF003107 3 223 2.3E-60 T 14-10-2018 IPR028366 Phosphate transport system protein PhoU GO:0005737|GO:0030643|GO:0045936 Amico_1682 850bb2aab4e434d889a987d092b7d2d8 229 SUPERFAMILY SSF109755 7 220 1.88E-61 T 14-10-2018 Amico_1682 850bb2aab4e434d889a987d092b7d2d8 229 Pfam PF01895 PhoU domain 23 108 5.2E-22 T 14-10-2018 IPR026022 PhoU domain Amico_1682 850bb2aab4e434d889a987d092b7d2d8 229 Pfam PF01895 PhoU domain 125 208 1.1E-20 T 14-10-2018 IPR026022 PhoU domain Amico_1682 850bb2aab4e434d889a987d092b7d2d8 229 Gene3D G3DSA:1.20.58.220 6 113 2.2E-29 T 14-10-2018 IPR038078 PhoU-like domain superfamily Amico_1682 850bb2aab4e434d889a987d092b7d2d8 229 Gene3D G3DSA:1.20.58.220 114 228 3.3E-37 T 14-10-2018 IPR038078 PhoU-like domain superfamily Amico_1136 dc7019e5c382a3521506e658013e3a80 257 SMART SM01040 13 101 2.0E-33 T 14-10-2018 IPR003497 BRO N-terminal domain Amico_1136 dc7019e5c382a3521506e658013e3a80 257 Pfam PF02498 BRO family, N-terminal domain 14 101 8.0E-25 T 14-10-2018 IPR003497 BRO N-terminal domain Amico_1136 dc7019e5c382a3521506e658013e3a80 257 Pfam PF03374 Phage antirepressor protein KilAC domain 145 252 1.3E-31 T 14-10-2018 IPR005039 Antirepressor protein, C-terminal GO:0003677 Amico_1108 19c9cde6519a93d1ba71a64d5b8ac42b 150 TIGRFAM TIGR01644 phage_P2_V: phage baseplate assembly protein V 14 145 2.0E-19 T 14-10-2018 IPR013046 Phage baseplate assembly protein V/Gp45 Amico_1108 19c9cde6519a93d1ba71a64d5b8ac42b 150 Pfam PF04717 Type VI secretion system, phage-baseplate injector 10 121 4.0E-14 T 14-10-2018 IPR006531 Gp5 N-terminal Amico_1108 19c9cde6519a93d1ba71a64d5b8ac42b 150 Gene3D G3DSA:2.40.50.230 4 93 1.5E-20 T 14-10-2018 IPR037026 Vgr protein, OB-fold domain superfamily Amico_0971 ade366b5304f4502368bc2dc0e6780c1 114 Pfam PF04456 Protein of unknown function (DUF503) 11 94 3.1E-23 T 14-10-2018 IPR007546 Protein of unknown function DUF503 Amico_0971 ade366b5304f4502368bc2dc0e6780c1 114 SUPERFAMILY SSF103007 10 97 1.27E-18 T 14-10-2018 IPR036746 TT1725-like superfamily Amico_0971 ade366b5304f4502368bc2dc0e6780c1 114 Gene3D G3DSA:3.30.70.1120 8 105 2.8E-18 T 14-10-2018 IPR036746 TT1725-like superfamily Amico_1408 a181a90b93c2e9502b81701ec674f121 155 Pfam PF05103 DivIVA protein 5 131 8.9E-32 T 14-10-2018 IPR007793 DivIVA family Amico_1408 a181a90b93c2e9502b81701ec674f121 155 TIGRFAM TIGR03544 DivI1A_domain: DivIVA domain 5 38 1.0E-15 T 14-10-2018 IPR019933 DivIVA domain Amico_1183 c9e6481ee5908dec335a602237fb8620 396 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 233 246 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Amico_1183 c9e6481ee5908dec335a602237fb8620 396 Gene3D G3DSA:3.40.640.10 62 283 2.1E-125 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1183 c9e6481ee5908dec335a602237fb8620 396 Gene3D G3DSA:3.90.1150.10 25 388 2.1E-125 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1183 c9e6481ee5908dec335a602237fb8620 396 SUPERFAMILY SSF53383 1 394 1.32E-105 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1183 c9e6481ee5908dec335a602237fb8620 396 Pfam PF00155 Aminotransferase class I and II 31 385 1.3E-60 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_1069 fb93d69b7d1442e4d04b632334dadb4e 68 SUPERFAMILY SSF57829 1 58 3.05E-17 T 14-10-2018 IPR011332 Zinc-binding ribosomal protein GO:0006412 Amico_1069 fb93d69b7d1442e4d04b632334dadb4e 68 Hamap MF_00340 50S ribosomal protein L32 [rpmF]. 1 57 17.796 T 14-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1069 fb93d69b7d1442e4d04b632334dadb4e 68 TIGRFAM TIGR01031 rpmF_bact: ribosomal protein bL32 2 58 3.4E-17 T 14-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1069 fb93d69b7d1442e4d04b632334dadb4e 68 Pfam PF01783 Ribosomal L32p protein family 2 58 5.7E-19 T 14-10-2018 IPR002677 Ribosomal protein L32p GO:0003735|GO:0006412|GO:0015934 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_1274 6e774cb1b82650e6b0747332f8f00e16 86 Pfam PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) 31 83 1.0E-18 T 14-10-2018 IPR007208 Na(+)/H(+) antiporter subunit F-like GO:0015075|GO:0016021|GO:0034220 Amico_0702 7d96109c4f6ac32d1bed2404c95e2eef 146 Hamap MF_00116 Deoxyuridine 5'-triphosphate nucleotidohydrolase [dut]. 4 145 32.233 T 14-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 Amico_0702 7d96109c4f6ac32d1bed2404c95e2eef 146 TIGRFAM TIGR00576 dut: dUTP diphosphatase 6 144 5.1E-52 T 14-10-2018 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase GO:0004170|GO:0046080 KEGG: 00240+3.6.1.23|KEGG: 00983+3.6.1.23 Amico_0702 7d96109c4f6ac32d1bed2404c95e2eef 146 Pfam PF00692 dUTPase 15 144 8.8E-32 T 14-10-2018 IPR029054 dUTPase-like Amico_0702 7d96109c4f6ac32d1bed2404c95e2eef 146 Gene3D G3DSA:2.70.40.10 1 144 1.1E-50 T 14-10-2018 IPR036157 dUTPase-like superfamily Amico_0702 7d96109c4f6ac32d1bed2404c95e2eef 146 SUPERFAMILY SSF51283 5 145 2.75E-49 T 14-10-2018 IPR036157 dUTPase-like superfamily Amico_0115 693799499724bdfde50eaff707e5a7d1 937 Hamap MF_01600 UPF0182 protein . 21 872 18.88 T 14-10-2018 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 Amico_0115 693799499724bdfde50eaff707e5a7d1 937 Pfam PF03699 Uncharacterised protein family (UPF0182) 37 797 1.0E-287 T 14-10-2018 IPR005372 Uncharacterised protein family UPF0182 GO:0016021 Amico_1142 4b86048f01e0bd814418705953ff22bc 226 Gene3D G3DSA:2.10.109.10 100 220 3.5E-6 T 14-10-2018 Amico_1142 4b86048f01e0bd814418705953ff22bc 226 SUPERFAMILY SSF51306 125 216 1.34E-10 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Amico_1142 4b86048f01e0bd814418705953ff22bc 226 Pfam PF01381 Helix-turn-helix 7 61 1.5E-13 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_1142 4b86048f01e0bd814418705953ff22bc 226 SUPERFAMILY SSF47413 2 67 2.95E-17 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Amico_1142 4b86048f01e0bd814418705953ff22bc 226 SMART SM00530 6 61 2.1E-15 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_1142 4b86048f01e0bd814418705953ff22bc 226 Gene3D G3DSA:1.10.260.40 3 86 4.2E-19 T 14-10-2018 Amico_1142 4b86048f01e0bd814418705953ff22bc 226 Pfam PF00717 Peptidase S24-like 136 199 8.2E-6 T 14-10-2018 IPR015927 Peptidase S24/S26A/S26B/S26C Amico_0879 4c0702ae366eaa702bcc53950165793d 435 SUPERFAMILY SSF55205 5 417 2.78E-128 T 14-10-2018 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta GO:0003824 Amico_0879 4c0702ae366eaa702bcc53950165793d 435 Hamap MF_00111 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [murA]. 2 417 41.183 T 14-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_0879 4c0702ae366eaa702bcc53950165793d 435 Gene3D G3DSA:3.65.10.10 21 231 9.9E-157 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Amico_0879 4c0702ae366eaa702bcc53950165793d 435 Gene3D G3DSA:3.65.10.10 7 415 9.9E-157 T 14-10-2018 IPR036968 Enolpyruvate transferase domain superfamily GO:0016765 Amico_0879 4c0702ae366eaa702bcc53950165793d 435 TIGRFAM TIGR01072 murA: UDP-N-acetylglucosamine 1-carboxyvinyltransferase 4 415 1.1E-160 T 14-10-2018 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase GO:0008760|GO:0019277 KEGG: 00520+2.5.1.7|KEGG: 00550+2.5.1.7|MetaCyc: PWY-6386|MetaCyc: PWY-6387|MetaCyc: PWY-7953 Amico_0879 4c0702ae366eaa702bcc53950165793d 435 Pfam PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) 8 407 4.8E-95 T 14-10-2018 IPR001986 Enolpyruvate transferase domain GO:0016765 Amico_0346 804ccbae5957086f67e49251125da38f 194 Pfam PF08241 Methyltransferase domain 43 132 2.1E-13 T 14-10-2018 IPR013216 Methyltransferase type 11 GO:0008168 Amico_0346 804ccbae5957086f67e49251125da38f 194 SUPERFAMILY SSF53335 3 183 4.96E-28 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_0346 804ccbae5957086f67e49251125da38f 194 Gene3D G3DSA:3.40.50.150 1 187 1.5E-26 T 14-10-2018 Amico_1434 9bfec8a46a89f3ace235c29e22583b6b 153 Pfam PF03477 ATP cone domain 51 136 5.5E-22 T 14-10-2018 IPR005144 ATP-cone domain Reactome: R-HSA-499943 Amico_1434 9bfec8a46a89f3ace235c29e22583b6b 153 Hamap MF_00440 Transcriptional repressor NrdR [nrdR]. 1 153 78.507 T 14-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Amico_1434 9bfec8a46a89f3ace235c29e22583b6b 153 TIGRFAM TIGR00244 TIGR00244: transcriptional regulator NrdR 1 148 4.2E-55 T 14-10-2018 IPR003796 Ribonucleotide reductase regulator NrdR-like GO:0008270|GO:0045892 Amico_0631 10343378627f294a5cb50ea1fbda7e97 93 ProSitePatterns PS00323 Ribosomal protein S19 signature. 53 77 - T 14-10-2018 IPR020934 Ribosomal protein S19 conserved site GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0631 10343378627f294a5cb50ea1fbda7e97 93 TIGRFAM TIGR01050 rpsS_bact: ribosomal protein uS19 1 90 1.4E-42 T 14-10-2018 IPR005732 Ribosomal protein S19, bacterial-type GO:0003735|GO:0006412|GO:0015935 Amico_0631 10343378627f294a5cb50ea1fbda7e97 93 Pfam PF00203 Ribosomal protein S19 3 83 6.5E-34 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0631 10343378627f294a5cb50ea1fbda7e97 93 PIRSF PIRSF002144 1 92 3.5E-33 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0631 10343378627f294a5cb50ea1fbda7e97 93 Gene3D G3DSA:3.30.860.10 1 92 1.3E-37 T 14-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0631 10343378627f294a5cb50ea1fbda7e97 93 SUPERFAMILY SSF54570 3 84 1.96E-33 T 14-10-2018 IPR023575 Ribosomal protein S19, superfamily GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0631 10343378627f294a5cb50ea1fbda7e97 93 PRINTS PR00975 Ribosomal protein S19 family signature 53 65 5.4E-24 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0631 10343378627f294a5cb50ea1fbda7e97 93 PRINTS PR00975 Ribosomal protein S19 family signature 65 80 5.4E-24 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0631 10343378627f294a5cb50ea1fbda7e97 93 PRINTS PR00975 Ribosomal protein S19 family signature 33 52 5.4E-24 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0631 10343378627f294a5cb50ea1fbda7e97 93 Hamap MF_00531 30S ribosomal protein S19 [rpsS]. 1 89 24.477 T 14-10-2018 IPR002222 Ribosomal protein S19/S15 GO:0003735|GO:0005840|GO:0006412 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0918 db2dc302cc383cc529aa10ddf90a6734 432 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 418 2.3E-84 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_0918 db2dc302cc383cc529aa10ddf90a6734 432 PIRSF PIRSF006066 1 431 1.7E-111 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0918 db2dc302cc383cc529aa10ddf90a6734 432 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 16 425 2.2E-103 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0247 f818dbdecf5b2fd3460ceaa9c21e34d5 172 Pfam PF01965 DJ-1/PfpI family 5 167 5.1E-38 T 14-10-2018 IPR002818 DJ-1/PfpI Reactome: R-HSA-3899300 Amico_0247 f818dbdecf5b2fd3460ceaa9c21e34d5 172 SUPERFAMILY SSF52317 4 170 4.4E-39 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Amico_0247 f818dbdecf5b2fd3460ceaa9c21e34d5 172 Gene3D G3DSA:3.40.50.880 1 172 8.8E-44 T 14-10-2018 IPR029062 Class I glutamine amidotransferase-like Amico_1639 a310654e18331dc7a205e4613bb8a4b4 101 Pfam PF05437 Branched-chain amino acid transport protein (AzlD) 5 97 1.1E-16 T 14-10-2018 IPR008407 Branched-chain amino acid transport, AzlD Amico_1494 684b12226bcc0c1746586ed7332bfcfb 285 Gene3D G3DSA:3.20.20.70 6 277 5.4E-101 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_1494 684b12226bcc0c1746586ed7332bfcfb 285 Hamap MF_00056 2-dehydro-3-deoxyphosphooctonate aldolase [kdsA]. 11 273 51.052 T 14-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Amico_1494 684b12226bcc0c1746586ed7332bfcfb 285 Pfam PF00793 DAHP synthetase I family 13 266 1.7E-66 T 14-10-2018 IPR006218 DAHP synthetase I/KDSA GO:0009058 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Amico_1494 684b12226bcc0c1746586ed7332bfcfb 285 SUPERFAMILY SSF51569 5 273 5.13E-103 T 14-10-2018 Amico_1494 684b12226bcc0c1746586ed7332bfcfb 285 TIGRFAM TIGR01362 KDO8P_synth: 3-deoxy-8-phosphooctulonate synthase 16 270 1.2E-120 T 14-10-2018 IPR006269 3-deoxy-8-phosphooctulonate synthase GO:0005737|GO:0008676 KEGG: 00540+2.5.1.55|MetaCyc: PWY-1269|MetaCyc: PWY-7674 Amico_0066 542f4830dca49ababfe0daf838824c98 202 Gene3D G3DSA:1.10.1760.20 1 193 2.3E-29 T 14-10-2018 Amico_0066 542f4830dca49ababfe0daf838824c98 202 Pfam PF01891 Cobalt uptake substrate-specific transmembrane region 2 193 8.0E-38 T 14-10-2018 IPR002751 Metal transport protein CbiM/NikMN GO:0000041|GO:0016021 Amico_0588 2f2cf1a99e34663b6a408134539c6862 91 Gene3D G3DSA:3.10.290.10 1 89 1.8E-18 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Amico_0588 2f2cf1a99e34663b6a408134539c6862 91 SUPERFAMILY SSF55174 1 68 4.58E-14 T 14-10-2018 Amico_0588 2f2cf1a99e34663b6a408134539c6862 91 PIRSF PIRSF038881 1 88 7.2E-23 T 14-10-2018 IPR025490 RNA-binding protein, HP1423 type Amico_0588 2f2cf1a99e34663b6a408134539c6862 91 Pfam PF01479 S4 domain 1 47 7.4E-9 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_0588 2f2cf1a99e34663b6a408134539c6862 91 SMART SM00363 1 60 1.5E-6 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_1764 5fd4c9bff5f77b94352152b9072f7d22 355 Pfam PF01594 AI-2E family transporter 30 342 1.8E-54 T 14-10-2018 IPR002549 Transmembrane protein TqsA-like Amico_1757 5b5477d18b05969ed8dde3346515e90a 463 Gene3D G3DSA:3.40.640.10 91 359 1.3E-127 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1757 5b5477d18b05969ed8dde3346515e90a 463 Gene3D G3DSA:3.90.1150.10 80 458 1.3E-127 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1757 5b5477d18b05969ed8dde3346515e90a 463 Pfam PF02347 Glycine cleavage system P-protein 18 457 2.0E-63 T 14-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Amico_1757 5b5477d18b05969ed8dde3346515e90a 463 SUPERFAMILY SSF53383 11 462 7.14E-78 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0747 414cbda5374f75409a231a5d70eaaecd 217 Gene3D G3DSA:2.170.120.20 102 199 1.8E-23 T 14-10-2018 IPR037121 Ribosomal protein L25, C-terminal Amico_0747 414cbda5374f75409a231a5d70eaaecd 217 Pfam PF14693 Ribosomal protein TL5, C-terminal domain 104 189 3.4E-24 T 14-10-2018 IPR020057 Ribosomal protein L25, beta domain Amico_0747 414cbda5374f75409a231a5d70eaaecd 217 SUPERFAMILY SSF50715 12 189 1.19E-43 T 14-10-2018 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily GO:0006412 Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Amico_0747 414cbda5374f75409a231a5d70eaaecd 217 Hamap MF_01334 50S ribosomal protein L25 [rplY]. 5 189 24.769 T 14-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Amico_0747 414cbda5374f75409a231a5d70eaaecd 217 ProDom PD012503 RIBOSOMAL L25 50S RRNA-BINDING RNA-BINDING RIBONUCLEOPROTEIN STRESS GENERAL CTC RRNA 7 96 1.0E-6 T 14-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Amico_0747 414cbda5374f75409a231a5d70eaaecd 217 TIGRFAM TIGR00731 bL25_bact_ctc: ribosomal protein bL25, Ctc-form 10 186 1.9E-40 T 14-10-2018 IPR001021 Ribosomal protein L25, long-form GO:0003735|GO:0005840|GO:0006412|GO:0008097 Amico_0747 414cbda5374f75409a231a5d70eaaecd 217 Gene3D G3DSA:2.40.240.10 4 98 2.5E-17 T 14-10-2018 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal Reactome: R-HSA-2408517|Reactome: R-HSA-379716 Amico_0747 414cbda5374f75409a231a5d70eaaecd 217 Pfam PF01386 Ribosomal L25p family 9 96 7.7E-17 T 14-10-2018 IPR029751 Ribosomal protein L25 GO:0003735|GO:0005840|GO:0006412|GO:0008097 Amico_0989 b1ff7131004f536aaed58270dc87bda3 212 Gene3D G3DSA:3.30.2320.30 108 194 1.5E-8 T 14-10-2018 IPR038495 V-type ATPase subunit E, C-terminal domain superfamily Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0989 b1ff7131004f536aaed58270dc87bda3 212 Pfam PF01991 ATP synthase (E/31 kDa) subunit 18 192 4.6E-8 T 14-10-2018 IPR002842 V-type ATPase subunit E GO:0015991|GO:0033178|GO:0046961 Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0989 b1ff7131004f536aaed58270dc87bda3 212 SUPERFAMILY SSF160527 88 192 1.7E-9 T 14-10-2018 Amico_0287 747d01ca4f7637bfcbf95cb98ebd78a4 347 SUPERFAMILY SSF51735 3 182 1.71E-20 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0287 747d01ca4f7637bfcbf95cb98ebd78a4 347 Pfam PF00742 Homoserine dehydrogenase 161 339 3.6E-45 T 14-10-2018 IPR001342 Homoserine dehydrogenase, catalytic GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Amico_0287 747d01ca4f7637bfcbf95cb98ebd78a4 347 ProSitePatterns PS01042 Homoserine dehydrogenase signature. 206 228 - T 14-10-2018 IPR019811 Homoserine dehydrogenase, conserved site GO:0006520|GO:0055114 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Amico_0287 747d01ca4f7637bfcbf95cb98ebd78a4 347 SUPERFAMILY SSF55347 161 326 3.4E-37 T 14-10-2018 Amico_0287 747d01ca4f7637bfcbf95cb98ebd78a4 347 Gene3D G3DSA:3.30.360.10 161 323 9.1E-90 T 14-10-2018 Amico_0287 747d01ca4f7637bfcbf95cb98ebd78a4 347 Gene3D G3DSA:3.40.50.720 6 328 9.1E-90 T 14-10-2018 Amico_0287 747d01ca4f7637bfcbf95cb98ebd78a4 347 PIRSF PIRSF036497 1 347 3.9E-89 T 14-10-2018 IPR022697 Homoserine dehydrogenase lacking ACT domain GO:0004412 KEGG: 00260+1.1.1.3|KEGG: 00270+1.1.1.3|KEGG: 00300+1.1.1.3 Amico_0287 747d01ca4f7637bfcbf95cb98ebd78a4 347 Pfam PF03447 Homoserine dehydrogenase, NAD binding domain 9 153 5.0E-8 T 14-10-2018 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding GO:0016491|GO:0050661|GO:0055114 Amico_1734 7593859360bec2ad4b211048523931af 291 Pfam PF00483 Nucleotidyl transferase 2 238 2.5E-64 T 14-10-2018 IPR005835 Nucleotidyl transferase domain GO:0009058|GO:0016779 Amico_1734 7593859360bec2ad4b211048523931af 291 TIGRFAM TIGR01207 rmlA: glucose-1-phosphate thymidylyltransferase 2 287 1.2E-145 T 14-10-2018 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form GO:0008879|GO:0045226 KEGG: 00521+2.7.7.24|KEGG: 00523+2.7.7.24|KEGG: 00525+2.7.7.24|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 Amico_1734 7593859360bec2ad4b211048523931af 291 Gene3D G3DSA:3.90.550.10 1 291 1.3E-79 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_1734 7593859360bec2ad4b211048523931af 291 SUPERFAMILY SSF53448 2 286 4.28E-82 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_0502 b371d6fdfabe4eaa5948db8fc762ef72 239 Pfam PF01177 Asp/Glu/Hydantoin racemase 116 218 1.2E-6 T 14-10-2018 IPR015942 Asp/Glu/hydantoin racemase GO:0006807|GO:0036361 KEGG: 00471+5.1.1.3|MetaCyc: PWY-6386|MetaCyc: PWY-6387 Amico_0502 b371d6fdfabe4eaa5948db8fc762ef72 239 PIRSF PIRSF015736 1 239 1.1E-64 T 14-10-2018 IPR026286 Maleate isomerase/Arylmalonate decarboxylase Amico_0502 b371d6fdfabe4eaa5948db8fc762ef72 239 Gene3D G3DSA:3.40.50.12500 1 237 4.8E-70 T 14-10-2018 Amico_1336 661ef55bea5066f72aa85064f021dd0d 1148 Pfam PF12950 TaqI-like C-terminal specificity domain 922 1084 2.4E-15 T 14-10-2018 IPR025931 TaqI-like C-terminal specificity domain Amico_1336 661ef55bea5066f72aa85064f021dd0d 1148 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 712 724 2.9E-8 T 14-10-2018 Amico_1336 661ef55bea5066f72aa85064f021dd0d 1148 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 749 773 2.9E-8 T 14-10-2018 Amico_1336 661ef55bea5066f72aa85064f021dd0d 1148 PRINTS PR00507 N12 class N6 adenine-specific DNA methyltransferase signature 429 445 2.9E-8 T 14-10-2018 Amico_1336 661ef55bea5066f72aa85064f021dd0d 1148 Pfam PF07669 Eco57I restriction-modification methylase 712 823 7.1E-13 T 14-10-2018 IPR011639 Restriction modification methylase Eco57I GO:0003677|GO:0003824|GO:0006304 Amico_1336 661ef55bea5066f72aa85064f021dd0d 1148 SUPERFAMILY SSF53335 218 834 1.27E-64 T 14-10-2018 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase Amico_1336 661ef55bea5066f72aa85064f021dd0d 1148 ProSitePatterns PS00092 N-6 Adenine-specific DNA methylases signature. 715 721 - T 14-10-2018 IPR002052 DNA methylase, N-6 adenine-specific, conserved site GO:0003676|GO:0008168|GO:0032259 Amico_1784 014122b146cb390bbaf3e5da36ccff31 291 Gene3D G3DSA:3.40.50.720 2 268 3.7E-89 T 14-10-2018 Amico_1784 014122b146cb390bbaf3e5da36ccff31 291 TIGRFAM TIGR01214 rmlD: dTDP-4-dehydrorhamnose reductase 3 280 6.7E-82 T 14-10-2018 IPR005913 dTDP-4-dehydrorhamnose reductase family Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Amico_1784 014122b146cb390bbaf3e5da36ccff31 291 Gene3D G3DSA:3.90.25.10 162 273 3.7E-89 T 14-10-2018 Amico_1784 014122b146cb390bbaf3e5da36ccff31 291 Pfam PF04321 RmlD substrate binding domain 1 280 2.0E-82 T 14-10-2018 IPR029903 RmlD-like substrate binding domain Reactome: R-HSA-156581|Reactome: R-HSA-5689880 Amico_1784 014122b146cb390bbaf3e5da36ccff31 291 SUPERFAMILY SSF51735 1 280 5.17E-79 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_0459 a3d290d9b16f63ba82432acb8710d78d 433 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 11 423 9.0E-79 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_0459 a3d290d9b16f63ba82432acb8710d78d 433 PIRSF PIRSF006066 5 433 3.4E-77 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0459 a3d290d9b16f63ba82432acb8710d78d 433 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 21 428 1.3E-95 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1489 d84212adab6a8f5b493fed09c2b3109b 373 Pfam PF06258 Mitochondrial fission ELM1 63 310 1.2E-46 T 14-10-2018 IPR009367 Mitochondrial fission protein ELM1-like Amico_0910 340e49bdc12b8bf74a13ba7f788a64ca 319 PIRSF PIRSF002825 2 317 2.1E-71 T 14-10-2018 IPR026045 Ferric binding protein Amico_0910 340e49bdc12b8bf74a13ba7f788a64ca 319 SUPERFAMILY SSF53850 9 313 1.99E-72 T 14-10-2018 Amico_0910 340e49bdc12b8bf74a13ba7f788a64ca 319 Gene3D G3DSA:3.40.190.10 17 286 2.3E-93 T 14-10-2018 Amico_0910 340e49bdc12b8bf74a13ba7f788a64ca 319 Gene3D G3DSA:3.40.190.10 114 301 2.3E-93 T 14-10-2018 Amico_0910 340e49bdc12b8bf74a13ba7f788a64ca 319 Pfam PF13343 Bacterial extracellular solute-binding protein 60 287 3.1E-34 T 14-10-2018 Amico_0099 6160593ede5e372cc10a8623e847f05d 171 Pfam PF00694 Aconitase C-terminal domain 41 102 2.2E-17 T 14-10-2018 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain KEGG: 00290+4.2.1.33 Amico_0099 6160593ede5e372cc10a8623e847f05d 171 Gene3D G3DSA:3.20.19.10 1 171 1.4E-62 T 14-10-2018 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel KEGG: 00290+4.2.1.33 Amico_0099 6160593ede5e372cc10a8623e847f05d 171 Hamap MF_01032 Methanogen homoaconitase small subunit [hacB]. 5 165 37.737 T 14-10-2018 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0016836 KEGG: 00290+4.2.1.33 Amico_0099 6160593ede5e372cc10a8623e847f05d 171 SUPERFAMILY SSF52016 3 166 2.35E-53 T 14-10-2018 Amico_0099 6160593ede5e372cc10a8623e847f05d 171 TIGRFAM TIGR02087 LEUD_arch: 3-isopropylmalate dehydratase, small subunit 7 162 4.9E-59 T 14-10-2018 IPR011827 Hydrolyase LeuD/HacB/DmdB GO:0016836 KEGG: 00290+4.2.1.33 Amico_0344 0af64149fcc052dc6261caf751e8e56f 329 Gene3D G3DSA:3.40.367.20 105 295 1.0E-69 T 14-10-2018 Amico_0344 0af64149fcc052dc6261caf751e8e56f 329 SUPERFAMILY SSF53067 3 310 2.65E-30 T 14-10-2018 Amico_0344 0af64149fcc052dc6261caf751e8e56f 329 Gene3D G3DSA:3.30.420.40 3 305 1.0E-69 T 14-10-2018 Amico_0344 0af64149fcc052dc6261caf751e8e56f 329 Pfam PF02685 Glucokinase 4 308 8.0E-65 T 14-10-2018 IPR003836 Glucokinase GO:0004340|GO:0005524|GO:0005536|GO:0006096|GO:0051156 KEGG: 00010+2.7.1.2|KEGG: 00052+2.7.1.2|KEGG: 00500+2.7.1.2|KEGG: 00520+2.7.1.2|KEGG: 00521+2.7.1.2|KEGG: 00524+2.7.1.2|MetaCyc: PWY-2722|MetaCyc: PWY-2723|MetaCyc: PWY-5514|MetaCyc: PWY-5661|MetaCyc: PWY-621|MetaCyc: PWY-7238|MetaCyc: PWY-7385 Amico_1386 f4614b8c46d8877becdb5f2dd69c5965 326 Gene3D G3DSA:3.90.650.10 150 324 3.9E-37 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Amico_1386 f4614b8c46d8877becdb5f2dd69c5965 326 Pfam PF00586 AIR synthase related protein, N-terminal domain 54 146 2.1E-15 T 14-10-2018 IPR016188 PurM-like, N-terminal domain Amico_1386 f4614b8c46d8877becdb5f2dd69c5965 326 PIRSF PIRSF005644 4 324 6.8E-64 T 14-10-2018 IPR011854 Carbamoyl dehydratase HypE Amico_1386 f4614b8c46d8877becdb5f2dd69c5965 326 SUPERFAMILY SSF55326 11 146 6.73E-24 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Amico_1386 f4614b8c46d8877becdb5f2dd69c5965 326 Gene3D G3DSA:3.30.1330.10 6 148 7.6E-25 T 14-10-2018 IPR036921 PurM-like, N-terminal domain superfamily Amico_1386 f4614b8c46d8877becdb5f2dd69c5965 326 Pfam PF02769 AIR synthase related protein, C-terminal domain 158 311 3.4E-19 T 14-10-2018 IPR010918 PurM-like, C-terminal domain Amico_1386 f4614b8c46d8877becdb5f2dd69c5965 326 SUPERFAMILY SSF56042 156 322 1.45E-30 T 14-10-2018 IPR036676 PurM-like, C-terminal domain superfamily Amico_0456 8e008b051dce72db6eb45f03ee02b16d 333 Pfam PF01208 Uroporphyrinogen decarboxylase (URO-D) 26 321 4.5E-32 T 14-10-2018 IPR000257 Uroporphyrinogen decarboxylase (URO-D) GO:0004853|GO:0006779 KEGG: 00860+4.1.1.37|MetaCyc: PWY-5531|MetaCyc: PWY-7159|MetaCyc: PWY-7766|Reactome: R-HSA-189451 Amico_0456 8e008b051dce72db6eb45f03ee02b16d 333 SUPERFAMILY SSF51726 3 322 3.79E-44 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Amico_0456 8e008b051dce72db6eb45f03ee02b16d 333 Gene3D G3DSA:3.20.20.210 1 329 4.7E-66 T 14-10-2018 IPR038071 UROD/MetE-like superfamily Reactome: R-HSA-189451 Amico_0729 92d642ec49c4f4693fb90ae9637f54d1 150 Pfam PF00571 CBS domain 3 57 1.4E-13 T 14-10-2018 IPR000644 CBS domain Amico_0729 92d642ec49c4f4693fb90ae9637f54d1 150 Pfam PF00571 CBS domain 90 144 2.8E-9 T 14-10-2018 IPR000644 CBS domain Amico_0729 92d642ec49c4f4693fb90ae9637f54d1 150 SMART SM00116 10 58 1.3E-11 T 14-10-2018 IPR000644 CBS domain Amico_0729 92d642ec49c4f4693fb90ae9637f54d1 150 SMART SM00116 97 145 0.96 T 14-10-2018 IPR000644 CBS domain Amico_0729 92d642ec49c4f4693fb90ae9637f54d1 150 Gene3D G3DSA:3.10.580.10 1 148 9.7E-32 T 14-10-2018 Amico_0729 92d642ec49c4f4693fb90ae9637f54d1 150 SUPERFAMILY SSF54631 1 144 9.22E-32 T 14-10-2018 Amico_1541 fa53e8211c4accb8c1c102fab3acf1d5 425 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 16 418 9.3E-106 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1541 fa53e8211c4accb8c1c102fab3acf1d5 425 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 414 5.8E-95 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1541 fa53e8211c4accb8c1c102fab3acf1d5 425 PIRSF PIRSF006066 1 425 5.5E-112 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1256 fd648c697368c658bdf5667762074b04 169 TIGRFAM TIGR01909 C_GCAxxG_C_C: C_GCAxxG_C_C family protein 27 135 2.9E-15 T 14-10-2018 IPR010181 CGCAxxGCC motif Amico_1256 fd648c697368c658bdf5667762074b04 169 Pfam PF09719 Putative redox-active protein (C_GCAxxG_C_C) 27 161 7.5E-24 T 14-10-2018 IPR010181 CGCAxxGCC motif Amico_0278 1fe0bd58317f3568016d88a34dd4560e 696 Gene3D G3DSA:3.40.1090.10 138 274 5.4E-23 T 14-10-2018 Amico_0278 1fe0bd58317f3568016d88a34dd4560e 696 Gene3D G3DSA:3.40.1090.10 25 122 2.5E-21 T 14-10-2018 Amico_0278 1fe0bd58317f3568016d88a34dd4560e 696 SUPERFAMILY SSF52151 32 311 1.73E-46 T 14-10-2018 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase Amico_0278 1fe0bd58317f3568016d88a34dd4560e 696 Pfam PF01734 Patatin-like phospholipase 34 221 2.3E-25 T 14-10-2018 IPR002641 Patatin-like phospholipase domain GO:0006629 Amico_1129 231f6a226fa09365720ba0e87458176e 63 Pfam PF14354 Restriction alleviation protein Lar 3 60 2.4E-11 T 14-10-2018 Amico_0340 22270af16bfc39e32900df465822a377 468 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 444 464 7.9E-22 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0340 22270af16bfc39e32900df465822a377 468 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 45 64 7.9E-22 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0340 22270af16bfc39e32900df465822a377 468 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 91 117 7.9E-22 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0340 22270af16bfc39e32900df465822a377 468 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 266 286 7.9E-22 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0340 22270af16bfc39e32900df465822a377 468 PRINTS PR00176 Sodium/chloride neurotransmitter symporter signature 16 37 7.9E-22 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0340 22270af16bfc39e32900df465822a377 468 ProSitePatterns PS00610 Sodium:neurotransmitter symporter family signature 1. 32 46 - T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0340 22270af16bfc39e32900df465822a377 468 SUPERFAMILY SSF161070 8 463 6.54E-127 T 14-10-2018 IPR037272 Sodium:neurotransmitter symporter superfamily GO:0005328 Amico_0340 22270af16bfc39e32900df465822a377 468 Pfam PF00209 Sodium:neurotransmitter symporter family 8 127 3.2E-29 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0340 22270af16bfc39e32900df465822a377 468 Pfam PF00209 Sodium:neurotransmitter symporter family 162 463 1.1E-23 T 14-10-2018 IPR000175 Sodium:neurotransmitter symporter GO:0005328|GO:0006836|GO:0016021 Amico_0483 87c3435ee2d6066f19eb0671f4ca4f07 223 Pfam PF03483 B3/4 domain 115 195 1.6E-7 T 14-10-2018 IPR005146 B3/B4 tRNA-binding domain GO:0003723|GO:0004826 KEGG: 00970+6.1.1.20 Amico_0483 87c3435ee2d6066f19eb0671f4ca4f07 223 SUPERFAMILY SSF56037 93 207 1.02E-11 T 14-10-2018 Amico_1398 a1db3d437a4930127d508965622e4878 107 Gene3D G3DSA:3.40.30.10 1 107 1.3E-29 T 14-10-2018 Amico_1398 a1db3d437a4930127d508965622e4878 107 Pfam PF00085 Thioredoxin 4 105 1.5E-26 T 14-10-2018 IPR013766 Thioredoxin domain GO:0045454 Amico_1398 a1db3d437a4930127d508965622e4878 107 SUPERFAMILY SSF52833 3 107 1.24E-32 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Amico_1398 a1db3d437a4930127d508965622e4878 107 PIRSF PIRSF000077 1 107 1.1E-28 T 14-10-2018 IPR005746 Thioredoxin GO:0006662|GO:0015035|GO:0045454 Amico_0053 bf206ef2cac45ede588b3fed84ae549f 374 Gene3D G3DSA:3.40.50.1980 25 171 1.1E-35 T 14-10-2018 Amico_0053 bf206ef2cac45ede588b3fed84ae549f 374 Pfam PF01497 Periplasmic binding protein 139 305 3.0E-18 T 14-10-2018 IPR002491 ABC transporter periplasmic binding domain Amico_0053 bf206ef2cac45ede588b3fed84ae549f 374 Gene3D G3DSA:3.40.50.1980 173 374 4.4E-67 T 14-10-2018 Amico_0053 bf206ef2cac45ede588b3fed84ae549f 374 SUPERFAMILY SSF53807 34 334 2.35E-40 T 14-10-2018 Amico_0575 a8707ddbbed4dc74c36cc513681d1a52 252 Pfam PF03968 OstA-like protein 113 230 1.2E-4 T 14-10-2018 IPR005653 Organic solvent tolerance-like, N-terminal Amico_0575 a8707ddbbed4dc74c36cc513681d1a52 252 Gene3D G3DSA:2.60.450.10 108 250 6.1E-6 T 14-10-2018 Amico_1155 bfc7a45a07a5146578774200906427be 79 Pfam PF06257 Biofilm formation stimulator VEG 4 72 3.2E-22 T 14-10-2018 IPR009366 Protein Veg GO:0006355 Amico_1155 bfc7a45a07a5146578774200906427be 79 Gene3D G3DSA:2.30.30.100 1 74 1.0E-14 T 14-10-2018 Amico_0891 fa152ba10642586a4831598531b37fd9 322 Gene3D G3DSA:3.30.360.10 123 303 3.0E-74 T 14-10-2018 Amico_0891 fa152ba10642586a4831598531b37fd9 322 Pfam PF01408 Oxidoreductase family, NAD-binding Rossmann fold 5 122 2.6E-33 T 14-10-2018 IPR000683 Oxidoreductase, N-terminal GO:0016491 Amico_0891 fa152ba10642586a4831598531b37fd9 322 Gene3D G3DSA:3.40.50.720 5 290 3.0E-74 T 14-10-2018 Amico_0891 fa152ba10642586a4831598531b37fd9 322 SUPERFAMILY SSF55347 157 289 5.4E-14 T 14-10-2018 Amico_0891 fa152ba10642586a4831598531b37fd9 322 SUPERFAMILY SSF51735 5 150 1.84E-43 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1731 5d1508910d37eb23333f1452cedf5e35 363 SUPERFAMILY SSF51735 7 347 2.49E-85 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1731 5d1508910d37eb23333f1452cedf5e35 363 Gene3D G3DSA:3.40.50.720 9 329 3.7E-126 T 14-10-2018 Amico_1731 5d1508910d37eb23333f1452cedf5e35 363 Pfam PF16363 GDP-mannose 4,6 dehydratase 10 330 2.2E-92 T 14-10-2018 IPR016040 NAD(P)-binding domain Amico_1731 5d1508910d37eb23333f1452cedf5e35 363 Gene3D G3DSA:3.90.25.10 207 337 3.7E-126 T 14-10-2018 Amico_1731 5d1508910d37eb23333f1452cedf5e35 363 TIGRFAM TIGR01181 dTDP_gluc_dehyt: dTDP-glucose 4,6-dehydratase 9 343 3.4E-147 T 14-10-2018 IPR005888 dTDP-glucose 4,6-dehydratase GO:0008460|GO:0009225 KEGG: 00521+4.2.1.46|KEGG: 00523+4.2.1.46|KEGG: 00525+4.2.1.46|MetaCyc: PWY-3221|MetaCyc: PWY-6808|MetaCyc: PWY-6942|MetaCyc: PWY-6953|MetaCyc: PWY-6973|MetaCyc: PWY-6974|MetaCyc: PWY-6976|MetaCyc: PWY-7104|MetaCyc: PWY-7301|MetaCyc: PWY-7312|MetaCyc: PWY-7315|MetaCyc: PWY-7316|MetaCyc: PWY-7318|MetaCyc: PWY-7413|MetaCyc: PWY-7414|MetaCyc: PWY-7440|MetaCyc: PWY-7657|MetaCyc: PWY-7688|MetaCyc: PWY-7814 Amico_1745 49b4c49a19b33910db9d4e4e57aff25e 436 PIRSF PIRSF037226 1 425 5.6E-71 T 14-10-2018 IPR017144 Peptidase M20A, amidohydrolase, predicted Amico_1745 49b4c49a19b33910db9d4e4e57aff25e 436 TIGRFAM TIGR01891 amidohydrolases: amidohydrolase 24 371 5.0E-55 T 14-10-2018 IPR017439 Amidohydrolase GO:0016787 Amico_1745 49b4c49a19b33910db9d4e4e57aff25e 436 Gene3D G3DSA:3.40.630.10 24 380 1.6E-81 T 14-10-2018 Amico_1745 49b4c49a19b33910db9d4e4e57aff25e 436 SUPERFAMILY SSF55031 202 317 4.97E-19 T 14-10-2018 IPR036264 Bacterial exopeptidase dimerisation domain Amico_1745 49b4c49a19b33910db9d4e4e57aff25e 436 Pfam PF07687 Peptidase dimerisation domain 204 290 2.2E-5 T 14-10-2018 IPR011650 Peptidase M20, dimerisation domain Amico_1745 49b4c49a19b33910db9d4e4e57aff25e 436 SUPERFAMILY SSF53187 8 405 3.42E-50 T 14-10-2018 Amico_1745 49b4c49a19b33910db9d4e4e57aff25e 436 Gene3D G3DSA:3.30.70.360 202 320 1.6E-81 T 14-10-2018 Amico_0058 50e559fda47e495757bc5c26f1699e2d 180 Pfam PF00156 Phosphoribosyl transferase domain 38 168 8.2E-19 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Amico_0058 50e559fda47e495757bc5c26f1699e2d 180 SUPERFAMILY SSF53271 31 163 4.46E-25 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Amico_0058 50e559fda47e495757bc5c26f1699e2d 180 Gene3D G3DSA:3.40.50.2020 2 178 3.1E-51 T 14-10-2018 Amico_1057 8b28ee0c7f290ade33180609b7d83442 398 Gene3D G3DSA:1.20.1250.20 207 395 5.1E-23 T 14-10-2018 Amico_1057 8b28ee0c7f290ade33180609b7d83442 398 Gene3D G3DSA:1.20.1250.20 7 190 3.2E-33 T 14-10-2018 Amico_1057 8b28ee0c7f290ade33180609b7d83442 398 Pfam PF07690 Major Facilitator Superfamily 16 198 3.3E-30 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Amico_1057 8b28ee0c7f290ade33180609b7d83442 398 Pfam PF07690 Major Facilitator Superfamily 220 390 7.4E-21 T 14-10-2018 IPR011701 Major facilitator superfamily GO:0016021|GO:0055085 Amico_1057 8b28ee0c7f290ade33180609b7d83442 398 SUPERFAMILY SSF103473 11 394 1.44E-61 T 14-10-2018 IPR036259 MFS transporter superfamily Amico_1057 8b28ee0c7f290ade33180609b7d83442 398 PRINTS PR01035 Tetracycline resistance protein signature 137 159 1.9E-7 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Amico_1057 8b28ee0c7f290ade33180609b7d83442 398 PRINTS PR01035 Tetracycline resistance protein signature 336 359 1.9E-7 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Amico_1057 8b28ee0c7f290ade33180609b7d83442 398 PRINTS PR01035 Tetracycline resistance protein signature 22 38 1.9E-7 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Amico_1057 8b28ee0c7f290ade33180609b7d83442 398 PRINTS PR01035 Tetracycline resistance protein signature 275 296 1.9E-7 T 14-10-2018 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG GO:0005215 Amico_0485 5e04c9b1564471b5c6a90fc93bf148d5 109 SUPERFAMILY SSF51182 10 108 6.68E-22 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Amico_0485 5e04c9b1564471b5c6a90fc93bf148d5 109 Pfam PF07883 Cupin domain 41 107 5.9E-9 T 14-10-2018 IPR013096 Cupin 2, conserved barrel Amico_0485 5e04c9b1564471b5c6a90fc93bf148d5 109 Gene3D G3DSA:2.60.120.10 3 106 1.6E-32 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Amico_1742 5dea803ddba6d375665da7178f694f37 71 Pfam PF07872 Protein of unknown function (DUF1659) 6 50 2.3E-12 T 14-10-2018 IPR012454 Protein of unknown function DUF1659 Amico_0513 ab1b5ede68922737f6863c035392ae19 271 SUPERFAMILY SSF52518 13 210 8.84E-65 T 14-10-2018 IPR029061 Thiamin diphosphate-binding fold Amico_0513 ab1b5ede68922737f6863c035392ae19 271 Pfam PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain 58 199 1.0E-33 T 14-10-2018 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding GO:0003824|GO:0030976 Amico_0513 ab1b5ede68922737f6863c035392ae19 271 Gene3D G3DSA:3.40.50.970 65 227 1.9E-29 T 14-10-2018 Amico_1706 fa35a4b5595ef304bcf761e5b1dfca2c 456 Gene3D G3DSA:3.30.1330.120 271 402 1.9E-118 T 14-10-2018 Amico_1706 fa35a4b5595ef304bcf761e5b1dfca2c 456 SUPERFAMILY SSF103378 5 453 8.63E-121 T 14-10-2018 IPR036148 MmgE/PrpD superfamily GO:0016829 Amico_1706 fa35a4b5595ef304bcf761e5b1dfca2c 456 Gene3D G3DSA:1.10.4100.10 27 419 1.9E-118 T 14-10-2018 Amico_1706 fa35a4b5595ef304bcf761e5b1dfca2c 456 Pfam PF03972 MmgE/PrpD family 8 439 4.2E-133 T 14-10-2018 IPR005656 MmgE/PrpD GO:0016829 Amico_1297 988070fc9ecfefdb03de25757cab521b 496 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 18 433 9.9E-127 T 14-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane Amico_1769 73b3dfbdfa09b2694e7d486a62987fd2 155 Gene3D G3DSA:3.30.1330.40 1 151 8.5E-58 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Amico_1769 73b3dfbdfa09b2694e7d486a62987fd2 155 Pfam PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease 4 151 4.3E-33 T 14-10-2018 IPR013813 Endoribonuclease L-PSP/chorismate mutase-like Amico_1769 73b3dfbdfa09b2694e7d486a62987fd2 155 SUPERFAMILY SSF55298 1 151 4.4E-52 T 14-10-2018 IPR035959 RutC-like superfamily Reactome: R-HSA-8849175 Amico_0667 daab6e68a18bb6aa41f74d22c7797a6f 141 Pfam PF00583 Acetyltransferase (GNAT) family 27 107 1.5E-10 T 14-10-2018 IPR000182 GNAT domain Amico_0667 daab6e68a18bb6aa41f74d22c7797a6f 141 SUPERFAMILY SSF55729 20 126 4.13E-19 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Amico_0667 daab6e68a18bb6aa41f74d22c7797a6f 141 Gene3D G3DSA:3.40.630.30 5 132 9.2E-24 T 14-10-2018 Amico_0156 af0f5e0c0058ca0c6f143a5f439d4a79 289 Pfam PF02653 Branched-chain amino acid transport system / permease component 4 273 6.8E-37 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Amico_0349 b86fb357bfd06755400680a3e6320805 66 Gene3D G3DSA:2.40.50.140 1 66 1.4E-31 T 14-10-2018 Amico_0349 b86fb357bfd06755400680a3e6320805 66 SMART SM00357 3 66 1.6E-31 T 14-10-2018 IPR011129 Cold shock domain GO:0003676 Amico_0349 b86fb357bfd06755400680a3e6320805 66 ProSitePatterns PS00352 'Cold-shock' domain signature. 15 33 - T 14-10-2018 IPR019844 Cold-shock conserved site Amico_0349 b86fb357bfd06755400680a3e6320805 66 Pfam PF00313 'Cold-shock' DNA-binding domain 3 65 1.9E-31 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_0349 b86fb357bfd06755400680a3e6320805 66 PIRSF PIRSF002599 1 66 2.2E-25 T 14-10-2018 IPR012156 Cold shock, CspA GO:0003676 Amico_0349 b86fb357bfd06755400680a3e6320805 66 SUPERFAMILY SSF50249 1 65 4.41E-26 T 14-10-2018 IPR012340 Nucleic acid-binding, OB-fold Amico_0349 b86fb357bfd06755400680a3e6320805 66 PRINTS PR00050 Cold shock protein signature 4 19 1.7E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_0349 b86fb357bfd06755400680a3e6320805 66 PRINTS PR00050 Cold shock protein signature 39 57 1.7E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_0349 b86fb357bfd06755400680a3e6320805 66 PRINTS PR00050 Cold shock protein signature 24 33 1.7E-18 T 14-10-2018 IPR002059 Cold-shock protein, DNA-binding GO:0003677|GO:0006355 Amico_0142 3f4cab137376013fa611d140e9fde327 399 ProSitePatterns PS00105 Aminotransferases class-I pyridoxal-phosphate attachment site. 234 247 - T 14-10-2018 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site GO:0003824|GO:0009058|GO:0030170 Amico_0142 3f4cab137376013fa611d140e9fde327 399 SUPERFAMILY SSF53383 1 394 1.24E-104 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0142 3f4cab137376013fa611d140e9fde327 399 Gene3D G3DSA:3.90.1150.10 26 387 3.4E-122 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0142 3f4cab137376013fa611d140e9fde327 399 Pfam PF00155 Aminotransferase class I and II 31 387 4.3E-67 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_0142 3f4cab137376013fa611d140e9fde327 399 Gene3D G3DSA:3.40.640.10 62 284 3.4E-122 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0524 aace9cf589351bd07b44fac869fb19a8 311 Pfam PF03601 Conserved hypothetical protein 698 20 285 4.4E-49 T 14-10-2018 IPR018383 Uncharacterised protein family UPF0324, prokaryote GO:0016021 Amico_0143 54c404e397719b52f4694cf10785e59d 322 Pfam PF03401 Tripartite tricarboxylate transporter family receptor 45 314 6.0E-64 T 14-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Amico_0143 54c404e397719b52f4694cf10785e59d 322 Gene3D G3DSA:3.40.190.150 25 312 7.1E-93 T 14-10-2018 Amico_0143 54c404e397719b52f4694cf10785e59d 322 PIRSF PIRSF017082 1 322 3.7E-94 T 14-10-2018 IPR005064 Bordetella uptake gene GO:0030288 Amico_0143 54c404e397719b52f4694cf10785e59d 322 Gene3D G3DSA:3.40.190.10 123 247 7.1E-93 T 14-10-2018 Amico_0143 54c404e397719b52f4694cf10785e59d 322 SUPERFAMILY SSF53850 115 282 7.06E-14 T 14-10-2018 Amico_0378 e4a94508dbb6521d8810b6a35fccecbb 282 SUPERFAMILY SSF56784 10 249 1.0E-12 T 14-10-2018 IPR036412 HAD-like superfamily Amico_1525 14b9c212eb73c3dfda59f9dea8c7832e 123 Pfam PF02021 Uncharacterised protein family UPF0102 10 99 8.0E-23 T 14-10-2018 IPR003509 Uncharacterised protein family UPF0102 Amico_1525 14b9c212eb73c3dfda59f9dea8c7832e 123 Gene3D G3DSA:3.40.1350.10 10 118 2.4E-23 T 14-10-2018 IPR011856 tRNA endonuclease-like domain superfamily GO:0003676|GO:0004518 Amico_1525 14b9c212eb73c3dfda59f9dea8c7832e 123 Hamap MF_00048 UPF0102 protein YraN [yraN]. 3 112 16.959 T 14-10-2018 IPR003509 Uncharacterised protein family UPF0102 Amico_1525 14b9c212eb73c3dfda59f9dea8c7832e 123 SUPERFAMILY SSF52980 8 101 2.25E-16 T 14-10-2018 IPR011335 Restriction endonuclease type II-like Reactome: R-HSA-6783310 Amico_1431 d7a355ef300bad59ea6d9982265a6c85 348 Pfam PF02653 Branched-chain amino acid transport system / permease component 35 318 6.6E-45 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Amico_0123 cc85f07ff8a43f88a1c9e83106a74511 549 Gene3D G3DSA:3.90.320.10 11 191 5.0E-8 T 14-10-2018 IPR011604 Exonuclease, phage-type/RecB, C-terminal Amico_0123 cc85f07ff8a43f88a1c9e83106a74511 549 Pfam PF01867 CRISPR associated protein Cas1 217 503 3.9E-78 T 14-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Amico_0123 cc85f07ff8a43f88a1c9e83106a74511 549 TIGRFAM TIGR03983 cas1_MYXAN: CRISPR-associated endonuclease Cas1, subtype MYXAN 204 549 2.5E-139 T 14-10-2018 IPR023844 CRISPR-associated protein Cas1, MYXAN subtype GO:0004520|GO:0043571|GO:0046872 Amico_0123 cc85f07ff8a43f88a1c9e83106a74511 549 Gene3D G3DSA:1.20.120.920 296 540 4.0E-63 T 14-10-2018 Amico_0123 cc85f07ff8a43f88a1c9e83106a74511 549 Pfam PF01930 Domain of unknown function DUF83 13 191 1.1E-28 T 14-10-2018 IPR022765 Dna2/Cas4, domain of unknown function DUF83 Amico_0123 cc85f07ff8a43f88a1c9e83106a74511 549 Gene3D G3DSA:3.100.10.20 213 291 3.7E-15 T 14-10-2018 Amico_0123 cc85f07ff8a43f88a1c9e83106a74511 549 TIGRFAM TIGR00287 cas1: CRISPR-associated endonuclease Cas1 217 538 6.3E-84 T 14-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Amico_0123 cc85f07ff8a43f88a1c9e83106a74511 549 TIGRFAM TIGR00372 cas4: CRISPR-associated protein Cas4 12 191 3.8E-28 T 14-10-2018 IPR013343 CRISPR-associated protein Cas4 Amico_0123 cc85f07ff8a43f88a1c9e83106a74511 549 Hamap MF_01470 CRISPR-associated endonuclease Cas1 [cas1]. 198 534 25.162 T 14-10-2018 IPR002729 CRISPR-associated protein Cas1 GO:0003676|GO:0004519|GO:0043571|GO:0046872|GO:0051607 Amico_0060 a69644400dc20c2479cbe53e0ce086dd 387 Pfam PF03773 Predicted permease 34 384 6.3E-78 T 14-10-2018 IPR005524 Predicted permease DUF318 Amico_1809 6ac3526b4b7d98ba7ca3103db01db932 436 Pfam PF00149 Calcineurin-like phosphoesterase 8 208 3.7E-13 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Amico_1809 6ac3526b4b7d98ba7ca3103db01db932 436 PIRSF PIRSF033091 4 433 4.4E-115 T 14-10-2018 IPR014576 Predicted phosphoesterase, YhaO type Amico_1809 6ac3526b4b7d98ba7ca3103db01db932 436 Gene3D G3DSA:3.60.21.10 6 251 1.3E-50 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Amico_1809 6ac3526b4b7d98ba7ca3103db01db932 436 SUPERFAMILY SSF56300 9 309 2.07E-52 T 14-10-2018 Amico_0839 7931e09292a7918380a90af40e204908 270 Pfam PF10670 Domain of unknown function (DUF4198) 24 244 2.3E-51 T 14-10-2018 IPR019613 Protein of unknown function DUF4198 Amico_0132 0f23839e3715aa7efed158b6a7bddd1c 181 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 40 167 1.8E-27 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_0370 5cfb00b37046d82c4f56ab6663d40ce6 364 Pfam PF01966 HD domain 208 328 2.9E-15 T 14-10-2018 IPR006674 HD domain Amico_0370 5cfb00b37046d82c4f56ab6663d40ce6 364 SUPERFAMILY SSF109604 199 328 1.57E-19 T 14-10-2018 Amico_0370 5cfb00b37046d82c4f56ab6663d40ce6 364 TIGRFAM TIGR00277 HDIG: HDIG domain 204 290 4.4E-10 T 14-10-2018 IPR006675 HDIG domain Amico_0370 5cfb00b37046d82c4f56ab6663d40ce6 364 SMART SM00471 203 339 4.7E-12 T 14-10-2018 IPR003607 HD/PDEase domain Amico_0370 5cfb00b37046d82c4f56ab6663d40ce6 364 Gene3D G3DSA:1.10.3210.10 187 360 1.6E-18 T 14-10-2018 Amico_0201 10174c6bd126d944b6a97703cc40f776 444 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 10 426 2.8E-92 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_0201 10174c6bd126d944b6a97703cc40f776 444 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 20 432 7.7E-97 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0201 10174c6bd126d944b6a97703cc40f776 444 PIRSF PIRSF006066 4 438 1.7E-106 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0993 2fe1cf6074af9ae6e9cbc056c342e322 152 Pfam PF00571 CBS domain 92 146 6.2E-13 T 14-10-2018 IPR000644 CBS domain Amico_0993 2fe1cf6074af9ae6e9cbc056c342e322 152 Pfam PF00571 CBS domain 5 58 3.6E-11 T 14-10-2018 IPR000644 CBS domain Amico_0993 2fe1cf6074af9ae6e9cbc056c342e322 152 Gene3D G3DSA:3.10.580.10 1 151 2.6E-35 T 14-10-2018 Amico_0993 2fe1cf6074af9ae6e9cbc056c342e322 152 SMART SM00116 99 146 1.3E-6 T 14-10-2018 IPR000644 CBS domain Amico_0993 2fe1cf6074af9ae6e9cbc056c342e322 152 SMART SM00116 12 60 3.9E-5 T 14-10-2018 IPR000644 CBS domain Amico_0993 2fe1cf6074af9ae6e9cbc056c342e322 152 SUPERFAMILY SSF54631 2 144 1.52E-32 T 14-10-2018 Amico_1640 1a23d617e5ba91ba14aebf4600f9276b 235 Pfam PF03591 AzlC protein 18 155 1.4E-39 T 14-10-2018 IPR011606 Branched-chain amino acid transport, permease Amico_0831 b8e01e510f6b30408a6092967d776cf5 296 Gene3D G3DSA:3.40.50.300 2 169 5.7E-6 T 14-10-2018 Amico_0831 b8e01e510f6b30408a6092967d776cf5 296 PIRSF PIRSF005052 9 294 1.3E-95 T 14-10-2018 IPR005337 RapZ-like family GO:0005524 Amico_0831 b8e01e510f6b30408a6092967d776cf5 296 SUPERFAMILY SSF52540 10 162 7.07E-14 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0831 b8e01e510f6b30408a6092967d776cf5 296 Pfam PF03668 P-loop ATPase protein family 12 291 5.0E-89 T 14-10-2018 IPR005337 RapZ-like family GO:0005524 Amico_0831 b8e01e510f6b30408a6092967d776cf5 296 Hamap MF_00636 RNase adapter protein RapZ [rapZ]. 9 291 37.593 T 14-10-2018 IPR005337 RapZ-like family GO:0005524 Amico_0756 3ea2098e8140b91b4dc253fc6ba91fb8 147 SUPERFAMILY SSF53927 20 144 1.9E-39 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Amico_0756 3ea2098e8140b91b4dc253fc6ba91fb8 147 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 20 117 2.1E-14 T 14-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Amico_0756 3ea2098e8140b91b4dc253fc6ba91fb8 147 Gene3D G3DSA:3.40.140.10 13 146 6.5E-44 T 14-10-2018 Amico_0756 3ea2098e8140b91b4dc253fc6ba91fb8 147 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 68 108 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Amico_0756 3ea2098e8140b91b4dc253fc6ba91fb8 147 TIGRFAM TIGR01354 cyt_deam_tetra: cytidine deaminase 20 142 4.0E-39 T 14-10-2018 IPR006262 Cytidine deaminase, homotetrameric GO:0004126|GO:0008270|GO:0009972 KEGG: 00240+3.5.4.5|KEGG: 00983+3.5.4.5|MetaCyc: PWY-6556|MetaCyc: PWY-7181|MetaCyc: PWY-7193|MetaCyc: PWY-7199|Reactome: R-HSA-6798695|Reactome: R-HSA-73614 Amico_0946 f0982aae7ebb4d30b39116252fc085a9 154 Pfam PF02556 Preprotein translocase subunit SecB 37 139 4.4E-5 T 14-10-2018 IPR003708 Bacterial protein export chaperone SecB GO:0015031|GO:0051082|GO:0051262 Amico_0946 f0982aae7ebb4d30b39116252fc085a9 154 Gene3D G3DSA:3.10.420.10 18 144 8.0E-7 T 14-10-2018 IPR035958 SecB-like superfamily Amico_0946 f0982aae7ebb4d30b39116252fc085a9 154 SUPERFAMILY SSF54611 19 140 4.36E-9 T 14-10-2018 IPR035958 SecB-like superfamily Amico_0219 eaa31e803b5fde80831e55051f1c803c 270 Pfam PF02535 ZIP Zinc transporter 119 265 4.6E-13 T 14-10-2018 IPR003689 Zinc/iron permease GO:0016020|GO:0030001|GO:0046873|GO:0055085 Amico_1811 984a9201f5f688249ba29a698ffe9045 346 SUPERFAMILY SSF52242 3 125 8.37E-9 T 14-10-2018 IPR036724 Cobalamin-binding domain superfamily GO:0031419|GO:0046872 Reactome: R-HSA-196741 Amico_1811 984a9201f5f688249ba29a698ffe9045 346 Gene3D G3DSA:3.40.50.280 2 123 1.6E-10 T 14-10-2018 Amico_1811 984a9201f5f688249ba29a698ffe9045 346 Pfam PF10050 Predicted metal-binding protein (DUF2284) 163 298 5.8E-7 T 14-10-2018 IPR019271 Protein of unknown function DUF2284, metal-binding Amico_1660 910a83499e4c5293ac828254b26b3a22 290 SUPERFAMILY SSF161098 83 273 9.81E-31 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1660 910a83499e4c5293ac828254b26b3a22 290 Pfam PF12911 N-terminal TM domain of oligopeptide transport permease C 13 65 1.5E-15 T 14-10-2018 IPR025966 Oligopeptide transport permease C-like, N-terminal domain Amico_1660 910a83499e4c5293ac828254b26b3a22 290 Gene3D G3DSA:1.10.3720.10 76 289 1.1E-23 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1660 910a83499e4c5293ac828254b26b3a22 290 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 107 289 5.3E-32 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0692 dc89675493ec715bb29bcb5cebc3ddb2 123 Gene3D G3DSA:3.30.230.10 1 103 2.1E-17 T 14-10-2018 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup Amico_0692 dc89675493ec715bb29bcb5cebc3ddb2 123 ProDom PD003629 P RIBONUCLEASE COMPONENT HYDROLASE RNASE C5 RNASEP RNA-BINDING PROCESSING ENDONUCLEASE 3 92 2.0E-7 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Amico_0692 dc89675493ec715bb29bcb5cebc3ddb2 123 SUPERFAMILY SSF54211 2 107 3.29E-20 T 14-10-2018 IPR020568 Ribosomal protein S5 domain 2-type fold Amico_0692 dc89675493ec715bb29bcb5cebc3ddb2 123 Pfam PF00825 Ribonuclease P 2 103 2.4E-19 T 14-10-2018 IPR000100 Ribonuclease P GO:0000049|GO:0004526|GO:0008033 Amico_1739 bbde02363c5da794d249116fd6629fb0 122 SUPERFAMILY SSF55166 13 117 2.55E-22 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Amico_1739 bbde02363c5da794d249116fd6629fb0 122 Gene3D G3DSA:3.30.1380.10 19 122 8.1E-24 T 14-10-2018 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily Reactome: R-HSA-373080|Reactome: R-HSA-5358346|Reactome: R-HSA-5362798|Reactome: R-HSA-5632681|Reactome: R-HSA-5632684|Reactome: R-HSA-5635838|Reactome: R-HSA-5658034 Amico_1739 bbde02363c5da794d249116fd6629fb0 122 Pfam PF08291 Peptidase M15 12 112 1.1E-22 T 14-10-2018 IPR013230 Peptidase M15A, C-terminal KEGG: 00550+3.4.17.14|MetaCyc: PWY-6470 Amico_1676 0853be63c6a793743411df1d2a8f0f5d 333 Gene3D G3DSA:3.40.190.170 25 320 2.4E-92 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1676 0853be63c6a793743411df1d2a8f0f5d 333 TIGRFAM TIGR00787 dctP: TRAP transporter solute receptor, DctP family 48 278 2.5E-62 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_1676 0853be63c6a793743411df1d2a8f0f5d 333 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 36 311 2.3E-73 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_1676 0853be63c6a793743411df1d2a8f0f5d 333 PIRSF PIRSF006470 1 326 1.1E-75 T 14-10-2018 IPR004682 TRAP transporter solute receptor, DctP family GO:0030288|GO:0055085 Amico_0603 3ded05072222dc81fbb66ef6144d9959 153 Pfam PF04093 rod shape-determining protein MreD 2 146 3.0E-5 T 14-10-2018 IPR007227 Cell shape-determining protein MreD GO:0008360|GO:0016021 Amico_1290 bc26ddaeea2e5b96341cf828b80f112b 63 SUPERFAMILY SSF54862 1 62 1.7E-14 T 14-10-2018 Amico_1290 bc26ddaeea2e5b96341cf828b80f112b 63 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 4.2E-8 T 14-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 Amico_1290 bc26ddaeea2e5b96341cf828b80f112b 63 PRINTS PR00352 3Fe-4S ferredoxin signature 47 59 4.2E-8 T 14-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 Amico_1290 bc26ddaeea2e5b96341cf828b80f112b 63 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 4.2E-8 T 14-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 Amico_1290 bc26ddaeea2e5b96341cf828b80f112b 63 Gene3D G3DSA:3.30.70.20 1 63 3.3E-21 T 14-10-2018 Amico_1290 bc26ddaeea2e5b96341cf828b80f112b 63 Pfam PF13459 4Fe-4S single cluster domain 4 61 8.6E-18 T 14-10-2018 Amico_0805 95cb8a94aa1dca89e055cde5504c91f5 336 Gene3D G3DSA:1.20.1690.10 181 294 7.0E-48 T 14-10-2018 IPR035067 V-type ATPase subunit c Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0805 95cb8a94aa1dca89e055cde5504c91f5 336 SUPERFAMILY SSF103486 7 334 3.14E-49 T 14-10-2018 IPR036079 V-type ATP synthase subunit C-like Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0805 95cb8a94aa1dca89e055cde5504c91f5 336 Gene3D G3DSA:1.20.1690.10 82 180 7.0E-48 T 14-10-2018 IPR035067 V-type ATPase subunit c Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0805 95cb8a94aa1dca89e055cde5504c91f5 336 Pfam PF01992 ATP synthase (C/AC39) subunit 11 329 6.7E-59 T 14-10-2018 IPR002843 ATPase, V0 complex, c/d subunit Reactome: R-HSA-1222556|Reactome: R-HSA-77387|Reactome: R-HSA-917977|Reactome: R-HSA-983712 Amico_0805 95cb8a94aa1dca89e055cde5504c91f5 336 Gene3D G3DSA:1.10.132.50 7 326 7.0E-48 T 14-10-2018 Amico_0618 c14a6057a4164987eed7e6b255dd93f1 326 Gene3D G3DSA:3.90.870.10 2 213 1.9E-80 T 14-10-2018 Amico_0618 c14a6057a4164987eed7e6b255dd93f1 326 Pfam PF03481 Putative GTP-binding controlling metal-binding 202 322 2.1E-18 T 14-10-2018 IPR005145 Putative GTP-binding controlling metal-binding domain Amico_0618 c14a6057a4164987eed7e6b255dd93f1 326 TIGRFAM TIGR00057 TIGR00057: tRNA threonylcarbamoyl adenosine modification protein, Sua5/YciO/YrdC/YwlC family 10 209 1.1E-62 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 Amico_0618 c14a6057a4164987eed7e6b255dd93f1 326 PIRSF PIRSF004930 1 326 7.5E-109 T 14-10-2018 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 Amico_0618 c14a6057a4164987eed7e6b255dd93f1 326 Gene3D G3DSA:3.40.50.11030 214 326 5.8E-17 T 14-10-2018 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily Amico_0618 c14a6057a4164987eed7e6b255dd93f1 326 Pfam PF01300 Telomere recombination 24 198 1.4E-56 T 14-10-2018 IPR006070 YrdC-like domain GO:0003725 Amico_0618 c14a6057a4164987eed7e6b255dd93f1 326 SUPERFAMILY SSF55821 5 211 6.41E-68 T 14-10-2018 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily Amico_1090 7a0257e26d921e9b71849177679eed7e 240 ProSitePatterns PS01149 Rsu family of pseudouridine synthase signature. 101 115 - T 14-10-2018 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site GO:0001522|GO:0003723|GO:0009451|GO:0016866 Amico_1090 7a0257e26d921e9b71849177679eed7e 240 Pfam PF00849 RNA pseudouridylate synthase 63 193 1.7E-16 T 14-10-2018 IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_1090 7a0257e26d921e9b71849177679eed7e 240 Gene3D G3DSA:3.10.290.10 1 59 1.1E-19 T 14-10-2018 IPR036986 RNA-binding S4 domain superfamily GO:0003723 Amico_1090 7a0257e26d921e9b71849177679eed7e 240 Gene3D G3DSA:3.30.70.1560 131 208 5.3E-47 T 14-10-2018 Amico_1090 7a0257e26d921e9b71849177679eed7e 240 TIGRFAM TIGR00093 TIGR00093: pseudouridine synthase 67 226 2.2E-39 T 14-10-2018 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F GO:0001522|GO:0003723|GO:0009451|GO:0016866 Amico_1090 7a0257e26d921e9b71849177679eed7e 240 Pfam PF01479 S4 domain 4 49 1.1E-10 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_1090 7a0257e26d921e9b71849177679eed7e 240 Gene3D G3DSA:3.30.70.580 64 229 5.3E-47 T 14-10-2018 Amico_1090 7a0257e26d921e9b71849177679eed7e 240 SUPERFAMILY SSF55120 47 229 3.45E-36 T 14-10-2018 IPR020103 Pseudouridine synthase, catalytic domain superfamily GO:0001522|GO:0003723|GO:0009451|GO:0009982 Amico_1090 7a0257e26d921e9b71849177679eed7e 240 SMART SM00363 3 64 1.2E-11 T 14-10-2018 IPR002942 RNA-binding S4 domain GO:0003723 Reactome: R-HSA-156827|Reactome: R-HSA-156902|Reactome: R-HSA-1799339|Reactome: R-HSA-192823|Reactome: R-HSA-2408557|Reactome: R-HSA-6791226|Reactome: R-HSA-72649|Reactome: R-HSA-72689|Reactome: R-HSA-72695|Reactome: R-HSA-72702|Reactome: R-HSA-72706|Reactome: R-HSA-72764|Reactome: R-HSA-9010553|Reactome: R-HSA-975956|Reactome: R-HSA-975957 Amico_1090 7a0257e26d921e9b71849177679eed7e 240 SUPERFAMILY SSF55174 3 58 1.14E-13 T 14-10-2018 Amico_1615 5cece0dd13490c606e985a7660daf9dc 406 SUPERFAMILY SSF109604 191 390 5.76E-30 T 14-10-2018 Amico_1615 5cece0dd13490c606e985a7660daf9dc 406 Pfam PF13023 HD domain 203 382 2.0E-35 T 14-10-2018 IPR006674 HD domain Amico_1615 5cece0dd13490c606e985a7660daf9dc 406 Gene3D G3DSA:1.10.3210.10 193 319 1.0E-30 T 14-10-2018 Amico_1615 5cece0dd13490c606e985a7660daf9dc 406 Gene3D G3DSA:1.10.3210.10 5 192 4.4E-27 T 14-10-2018 Amico_0211 963bf4a7f714c1222615a3f991b77100 531 Pfam PF07969 Amidohydrolase family 46 511 3.1E-32 T 14-10-2018 IPR013108 Amidohydrolase 3 Amico_0211 963bf4a7f714c1222615a3f991b77100 531 SUPERFAMILY SSF51338 2 520 1.32E-23 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_0211 963bf4a7f714c1222615a3f991b77100 531 SUPERFAMILY SSF51556 58 469 2.69E-80 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_1207 5972f2624a5efdc530e074cb32b6cdd9 53 Pfam PF04964 Flp/Fap pilin component 9 52 6.8E-12 T 14-10-2018 IPR007047 Flp/Fap pilin component Amico_1311 d9a333e7b57c242c58168696c6ca8d07 359 Gene3D G3DSA:3.60.60.10 12 347 1.3E-99 T 14-10-2018 Amico_1311 d9a333e7b57c242c58168696c6ca8d07 359 Gene3D G3DSA:1.10.10.2120 27 100 1.3E-99 T 14-10-2018 Amico_1311 d9a333e7b57c242c58168696c6ca8d07 359 Pfam PF03417 Acyl-coenzyme A:6-aminopenicillanic acid acyl-transferase 117 343 1.9E-21 T 14-10-2018 IPR005079 Peptidase C45 Amico_0784 e05d7f211a18232edae1b35b235cba93 316 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 113 309 1.3E-41 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0784 e05d7f211a18232edae1b35b235cba93 316 Gene3D G3DSA:1.10.3720.10 87 305 2.9E-27 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0784 e05d7f211a18232edae1b35b235cba93 316 SUPERFAMILY SSF161098 89 294 6.54E-26 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0296 b6069efdcbe44941f3f2c82ec31dfeee 74 Pfam PF03840 Preprotein translocase SecG subunit 2 72 1.1E-16 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Amico_0296 b6069efdcbe44941f3f2c82ec31dfeee 74 PRINTS PR01651 Protein-export SecG membrane protein signature 53 74 7.6E-14 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Amico_0296 b6069efdcbe44941f3f2c82ec31dfeee 74 PRINTS PR01651 Protein-export SecG membrane protein signature 21 35 7.6E-14 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Amico_0296 b6069efdcbe44941f3f2c82ec31dfeee 74 PRINTS PR01651 Protein-export SecG membrane protein signature 1 21 7.6E-14 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Amico_0296 b6069efdcbe44941f3f2c82ec31dfeee 74 TIGRFAM TIGR00810 secG: preprotein translocase, SecG subunit 1 72 6.2E-18 T 14-10-2018 IPR004692 Preprotein translocase SecG subunit GO:0009306|GO:0015450|GO:0016021 Amico_0275 b630a222f2ed44f5ac64532db0875688 154 SUPERFAMILY SSF53098 1 138 7.21E-10 T 14-10-2018 IPR012337 Ribonuclease H-like superfamily Amico_0689 d528978216dd8132f2ae50c8da449522 312 Gene3D G3DSA:1.10.8.60 122 205 4.9E-9 T 14-10-2018 Amico_1304 fe82342fc9c4255db4dce74f75fdab1c 419 Gene3D G3DSA:3.90.226.30 3 409 1.7E-137 T 14-10-2018 Amico_1304 fe82342fc9c4255db4dce74f75fdab1c 419 Pfam PF09861 Domain of unknown function (DUF2088) 5 201 5.3E-66 T 14-10-2018 IPR018657 LarA-like, N-terminal GO:0050043 KEGG: 00620+5.1.2.1 Amico_1304 fe82342fc9c4255db4dce74f75fdab1c 419 Gene3D G3DSA:3.40.50.11440 32 264 1.7E-137 T 14-10-2018 Amico_0432 e62c3936648904ad42c71f190e8c437c 310 Gene3D G3DSA:1.25.40.10 5 192 3.3E-6 T 14-10-2018 IPR011990 Tetratricopeptide-like helical domain superfamily GO:0005515 Amico_0799 d11683dfe5555d59ea5a49747730eddd 391 Pfam PF00999 Sodium/hydrogen exchanger family 9 369 1.1E-30 T 14-10-2018 IPR006153 Cation/H+ exchanger GO:0006812|GO:0015299|GO:0016021|GO:0055085 Amico_0799 d11683dfe5555d59ea5a49747730eddd 391 Gene3D G3DSA:1.20.1530.20 1 388 2.7E-35 T 14-10-2018 IPR038770 Sodium/solute symporter superfamily Amico_1582 52eb311792b135b3caa13bec10965de7 487 Gene3D G3DSA:3.90.1150.10 337 470 4.0E-43 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_1582 52eb311792b135b3caa13bec10965de7 487 SUPERFAMILY SSF53383 7 485 2.56E-110 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_1582 52eb311792b135b3caa13bec10965de7 487 Pfam PF02347 Glycine cleavage system P-protein 31 297 2.4E-10 T 14-10-2018 IPR020581 Glycine cleavage system P protein GO:0004375|GO:0006546|GO:0055114 KEGG: 00260+1.4.4.2|Reactome: R-HSA-6783984 Amico_1582 52eb311792b135b3caa13bec10965de7 487 Gene3D G3DSA:3.40.640.10 85 312 7.7E-58 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_1582 52eb311792b135b3caa13bec10965de7 487 Hamap MF_00713 Probable glycine dehydrogenase (decarboxylating) subunit 2 [gcvPB]. 6 485 60.028 T 14-10-2018 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 GO:0004375|GO:0019464 KEGG: 00260+1.4.4.2 Amico_0439 085a0cfd5e892d63078092ca6ab0dedc 267 Pfam PF09339 IclR helix-turn-helix domain 11 59 6.4E-7 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_0439 085a0cfd5e892d63078092ca6ab0dedc 267 Gene3D G3DSA:3.30.450.40 84 250 6.4E-41 T 14-10-2018 IPR029016 GAF-like domain superfamily Amico_0439 085a0cfd5e892d63078092ca6ab0dedc 267 SUPERFAMILY SSF46785 10 79 1.55E-12 T 14-10-2018 IPR036390 Winged helix DNA-binding domain superfamily Amico_0439 085a0cfd5e892d63078092ca6ab0dedc 267 SUPERFAMILY SSF55781 73 248 5.89E-39 T 14-10-2018 Amico_0439 085a0cfd5e892d63078092ca6ab0dedc 267 Gene3D G3DSA:1.10.10.10 7 81 4.2E-15 T 14-10-2018 IPR036388 Winged helix-like DNA-binding domain superfamily Amico_0439 085a0cfd5e892d63078092ca6ab0dedc 267 SMART SM00346 9 98 2.4E-11 T 14-10-2018 IPR005471 Transcription regulator IclR, N-terminal GO:0003677|GO:0006355 Amico_0439 085a0cfd5e892d63078092ca6ab0dedc 267 Pfam PF01614 Bacterial transcriptional regulator 133 239 5.0E-16 T 14-10-2018 IPR014757 Transcription regulator IclR, C-terminal Amico_1580 0e10d9aa21dfc830038e5cd89b09f985 133 ProSitePatterns PS00189 2-oxo acid dehydrogenases acyltransferase component lipoyl binding site. 48 77 - T 14-10-2018 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site Reactome: R-HSA-389661 Amico_1580 0e10d9aa21dfc830038e5cd89b09f985 133 Gene3D G3DSA:2.40.50.100 1 126 1.9E-49 T 14-10-2018 Amico_1580 0e10d9aa21dfc830038e5cd89b09f985 133 TIGRFAM TIGR00527 gcvH: glycine cleavage system H protein 6 124 6.9E-47 T 14-10-2018 IPR017453 Glycine cleavage system H-protein, subgroup GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Amico_1580 0e10d9aa21dfc830038e5cd89b09f985 133 Pfam PF01597 Glycine cleavage H-protein 8 125 1.2E-42 T 14-10-2018 IPR033753 Glycine cleavage system H-protein/Simiate Amico_1580 0e10d9aa21dfc830038e5cd89b09f985 133 SUPERFAMILY SSF51230 4 125 3.53E-42 T 14-10-2018 IPR011053 Single hybrid motif Amico_1580 0e10d9aa21dfc830038e5cd89b09f985 133 Hamap MF_00272 Glycine cleavage system H protein [gcvH]. 5 125 37.994 T 14-10-2018 IPR002930 Glycine cleavage system H-protein GO:0005960|GO:0019464 Reactome: R-HSA-389661|Reactome: R-HSA-6783984 Amico_0924 08d57612449401ed524a02e86d7aaced 327 Pfam PF13280 WYL domain 146 321 5.1E-33 T 14-10-2018 IPR026881 WYL domain Amico_1197 792217ac282682e9ac30297bfc5a33b5 296 Pfam PF00482 Type II secretion system (T2SS), protein F 158 282 1.4E-19 T 14-10-2018 IPR018076 Type II secretion system F domain Amico_0295 604b9eb1eb2c54badd2a464720f95d3f 196 Hamap MF_01405 dITP/XTP pyrophosphatase. 6 194 39.474 T 14-10-2018 IPR020922 dITP/XTP pyrophosphatase GO:0009143|GO:0017111 KEGG: 00230+3.6.1.66 Amico_0295 604b9eb1eb2c54badd2a464720f95d3f 196 TIGRFAM TIGR00042 TIGR00042: non-canonical purine NTP pyrophosphatase, RdgB/HAM1 family 8 191 5.5E-45 T 14-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 Amico_0295 604b9eb1eb2c54badd2a464720f95d3f 196 Pfam PF01725 Ham1 family 8 189 1.2E-45 T 14-10-2018 IPR002637 Ham1-like protein GO:0009143|GO:0047429 KEGG: 00230+3.6.1.66|Reactome: R-HSA-74259 Amico_0295 604b9eb1eb2c54badd2a464720f95d3f 196 Gene3D G3DSA:3.90.950.10 2 196 1.2E-57 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Amico_0295 604b9eb1eb2c54badd2a464720f95d3f 196 SUPERFAMILY SSF52972 6 192 2.04E-54 T 14-10-2018 IPR029001 Inosine triphosphate pyrophosphatase-like Amico_0350 888722ac9625aecf019b421485867977 555 SMART SM00487 23 220 3.4E-54 T 14-10-2018 IPR014001 Helicase superfamily 1/2, ATP-binding domain Amico_0350 888722ac9625aecf019b421485867977 555 Gene3D G3DSA:3.40.50.300 1 208 1.3E-66 T 14-10-2018 Amico_0350 888722ac9625aecf019b421485867977 555 Pfam PF00271 Helicase conserved C-terminal domain 233 337 3.5E-28 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_0350 888722ac9625aecf019b421485867977 555 Pfam PF00270 DEAD/DEAH box helicase 28 194 2.8E-43 T 14-10-2018 IPR011545 DEAD/DEAH box helicase domain GO:0003676|GO:0005524 Amico_0350 888722ac9625aecf019b421485867977 555 Pfam PF03880 DbpA RNA binding domain 465 516 1.3E-6 T 14-10-2018 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain Amico_0350 888722ac9625aecf019b421485867977 555 SUPERFAMILY SSF52540 73 351 2.62E-68 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0350 888722ac9625aecf019b421485867977 555 Gene3D G3DSA:3.40.50.300 211 420 4.2E-47 T 14-10-2018 Amico_0350 888722ac9625aecf019b421485867977 555 SMART SM00490 256 337 1.0E-30 T 14-10-2018 IPR001650 Helicase, C-terminal Amico_0963 155e8766ff32b1d07175e03693f01b39 179 Pfam PF08905 Domain of unknown function (DUF1850) 68 150 4.6E-17 T 14-10-2018 IPR015001 Protein of unknown function DUF1850 Amico_0362 0f093d96cd315cfb0a51498a2d609a70 199 Pfam PF00881 Nitroreductase family 18 160 4.3E-25 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Amico_0362 0f093d96cd315cfb0a51498a2d609a70 199 Gene3D G3DSA:3.40.109.10 2 198 1.4E-50 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Amico_0362 0f093d96cd315cfb0a51498a2d609a70 199 SUPERFAMILY SSF55469 7 196 2.49E-44 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Amico_0302 0a86811179de9899d00c369e96d3b47b 443 SUPERFAMILY SSF56954 5 438 4.05E-73 T 14-10-2018 Amico_0302 0a86811179de9899d00c369e96d3b47b 443 PIRSF PIRSF001892 14 442 3.7E-58 T 14-10-2018 IPR028351 Cyclolysin transport protein CyaE GO:0005215 Amico_0302 0a86811179de9899d00c369e96d3b47b 443 Pfam PF02321 Outer membrane efflux protein 40 230 1.5E-28 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Amico_0302 0a86811179de9899d00c369e96d3b47b 443 Pfam PF02321 Outer membrane efflux protein 257 435 6.3E-25 T 14-10-2018 IPR003423 Outer membrane efflux protein GO:0015562|GO:0055085 Amico_0302 0a86811179de9899d00c369e96d3b47b 443 Gene3D G3DSA:1.20.1600.10 24 443 4.8E-74 T 14-10-2018 Amico_1190 5d65f7e77e39e3ed5a88c1720b1ab0de 112 Gene3D G3DSA:1.20.58.1000 15 96 3.8E-24 T 14-10-2018 IPR038390 Metal-sensitive transcriptional repressor superfamily Amico_1190 5d65f7e77e39e3ed5a88c1720b1ab0de 112 Pfam PF02583 Metal-sensitive transcriptional repressor 18 90 5.1E-25 T 14-10-2018 IPR003735 Metal-sensitive transcriptional repressor GO:0003677|GO:0006355|GO:0046872 Amico_1198 bad56cd82e46dba5d219d222dfd0e351 309 Gene3D G3DSA:1.20.81.30 132 244 6.6E-9 T 14-10-2018 Amico_1198 bad56cd82e46dba5d219d222dfd0e351 309 Pfam PF00482 Type II secretion system (T2SS), protein F 142 266 7.5E-16 T 14-10-2018 IPR018076 Type II secretion system F domain Amico_0675 7b7bfaab173f1e70b9dd866f2ec3eb22 112 SUPERFAMILY SSF75138 2 108 1.31E-11 T 14-10-2018 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily Amico_1669 1ab8bbe6f1b12dd71c104f2386709995 266 Pfam PF03180 NLPA lipoprotein 31 266 7.4E-92 T 14-10-2018 IPR004872 Lipoprotein NlpA family Amico_1669 1ab8bbe6f1b12dd71c104f2386709995 266 Gene3D G3DSA:3.40.190.10 31 262 1.4E-96 T 14-10-2018 Amico_1669 1ab8bbe6f1b12dd71c104f2386709995 266 Gene3D G3DSA:3.40.190.10 112 216 1.4E-96 T 14-10-2018 Amico_1669 1ab8bbe6f1b12dd71c104f2386709995 266 SUPERFAMILY SSF53850 31 266 9.19E-81 T 14-10-2018 Amico_1669 1ab8bbe6f1b12dd71c104f2386709995 266 PIRSF PIRSF002854 1 266 1.2E-99 T 14-10-2018 IPR004872 Lipoprotein NlpA family Amico_1820 8e9182966a0606a39c9a70bf5e0a3e15 698 Gene3D G3DSA:3.90.550.10 102 290 5.3E-15 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_1820 8e9182966a0606a39c9a70bf5e0a3e15 698 Pfam PF00535 Glycosyl transferase family 2 106 287 3.9E-9 T 14-10-2018 IPR001173 Glycosyltransferase 2-like Reactome: R-HSA-913709 Amico_1820 8e9182966a0606a39c9a70bf5e0a3e15 698 SUPERFAMILY SSF53448 104 391 1.69E-21 T 14-10-2018 IPR029044 Nucleotide-diphospho-sugar transferases Amico_0441 7915faca8ab8a2163df5f7cdf8508e95 232 SUPERFAMILY SSF89562 24 187 3.01E-43 T 14-10-2018 IPR036704 Ribonuclease E inhibitor RraA/RraA-like superfamily Amico_0441 7915faca8ab8a2163df5f7cdf8508e95 232 Gene3D G3DSA:3.50.30.100 5 199 7.0E-53 T 14-10-2018 Amico_0441 7915faca8ab8a2163df5f7cdf8508e95 232 Pfam PF03737 Aldolase/RraA 28 177 1.3E-41 T 14-10-2018 IPR005493 Ribonuclease E inhibitor RraA/RraA-like protein Amico_1344 9c19668df2dc6672bc0119d36a86a849 233 Gene3D G3DSA:3.60.60.10 2 223 7.6E-15 T 14-10-2018 Amico_0307 23df3263700dbfb51000e57f33681e89 129 Pfam PF08843 Nucleotidyl transferase AbiEii toxin, Type IV TA system 25 76 3.2E-9 T 14-10-2018 IPR014942 Nucleotidyl transferase AbiEii toxin, Type IV TA system Amico_1885 5b3e1e532f5fedcb5b514d32d4ea2d71 414 TIGRFAM TIGR01224 hutI: imidazolonepropionase 34 410 1.8E-136 T 14-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1885 5b3e1e532f5fedcb5b514d32d4ea2d71 414 Gene3D G3DSA:3.20.20.140 76 373 4.7E-160 T 14-10-2018 Amico_1885 5b3e1e532f5fedcb5b514d32d4ea2d71 414 SUPERFAMILY SSF51556 75 374 6.53E-80 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_1885 5b3e1e532f5fedcb5b514d32d4ea2d71 414 SUPERFAMILY SSF51338 5 413 4.15E-17 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1885 5b3e1e532f5fedcb5b514d32d4ea2d71 414 Hamap MF_00372 Imidazolonepropionase [hutI]. 3 413 40.389 T 14-10-2018 IPR005920 Imidazolonepropionase GO:0005737|GO:0016812|GO:0019556 KEGG: 00340+3.5.2.7|MetaCyc: PWY-5028|MetaCyc: PWY-5030|Reactome: R-HSA-70921 Amico_1885 5b3e1e532f5fedcb5b514d32d4ea2d71 414 Gene3D G3DSA:2.30.40.10 11 410 4.7E-160 T 14-10-2018 IPR011059 Metal-dependent hydrolase, composite domain superfamily GO:0016810 Amico_1885 5b3e1e532f5fedcb5b514d32d4ea2d71 414 Pfam PF01979 Amidohydrolase family 73 413 1.7E-23 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Amico_1645 a072a4407bbd09853f59a8f22b630187 299 Gene3D G3DSA:3.30.70.120 206 283 1.0E-20 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Amico_1645 a072a4407bbd09853f59a8f22b630187 299 Pfam PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 27 230 1.3E-52 T 14-10-2018 IPR003740 Uncharacterised membrane protein YitT Amico_1645 a072a4407bbd09853f59a8f22b630187 299 Pfam PF10035 Uncharacterized protein conserved in bacteria (DUF2179) 236 290 3.2E-17 T 14-10-2018 IPR019264 Domain of unknown function DUF2179 Amico_1645 a072a4407bbd09853f59a8f22b630187 299 PIRSF PIRSF006483 15 298 2.3E-73 T 14-10-2018 IPR003740 Uncharacterised membrane protein YitT Amico_1393 b0a01b79a9c18605ba0b99a4641d85d3 77 TIGRFAM TIGR01918 various_sel_PB: selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family 1 75 1.5E-38 T 14-10-2018 IPR010187 Selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family GO:0050485|GO:0055114 Amico_1272 35b7dffe55552d66b1414947d9e5724e 87 Pfam PF13244 Domain of unknown function (DUF4040) 12 74 6.6E-21 T 14-10-2018 IPR025383 Domain of unknown function DUF4040 Amico_1203 850750d5fc3df50608240a18a22ddddf 329 Pfam PF13400 Putative Flp pilus-assembly TadE/G-like 14 60 1.3E-10 T 14-10-2018 IPR028087 Putative Flp pilus-assembly TadG-like, N-terminal Amico_1691 3455e4683447b3900ec15da23a52762d 345 Gene3D G3DSA:3.40.190.170 33 340 1.4E-67 T 14-10-2018 IPR038404 TRAP transporter solute receptor DctP superfamily Amico_1691 3455e4683447b3900ec15da23a52762d 345 Pfam PF03480 Bacterial extracellular solute-binding protein, family 7 41 323 3.7E-42 T 14-10-2018 IPR018389 TRAP transporter solute receptor DctP/TeaA GO:0030288|GO:0055085 Amico_1273 801a69209578331add69c5d4938e9975 127 TIGRFAM TIGR01300 CPA3_mnhG_phaG: monovalent cation/proton antiporter, MnhG/PhaG subunit 10 113 1.3E-27 T 14-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 Amico_1273 801a69209578331add69c5d4938e9975 127 Pfam PF03334 Na+/H+ antiporter subunit 11 100 2.4E-24 T 14-10-2018 IPR005133 Na+/H+ antiporter subunit G GO:0005451|GO:0015672|GO:1902600 Amico_0818 2552b229c1f8d6997aa139ab3ed38a0d 366 Pfam PF01098 Cell cycle protein 11 360 3.9E-89 T 14-10-2018 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA GO:0016021|GO:0051301 KEGG: 00550+2.4.1.129|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471 Amico_1210 0d7ee045639b3039b571165e2844bf4a 394 SUPERFAMILY SSF53901 272 392 4.87E-40 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_1210 0d7ee045639b3039b571165e2844bf4a 394 SUPERFAMILY SSF53901 4 268 9.71E-68 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_1210 0d7ee045639b3039b571165e2844bf4a 394 ProSitePatterns PS00737 Thiolases signature 2. 339 355 - T 14-10-2018 IPR020613 Thiolase, conserved site GO:0016747 Amico_1210 0d7ee045639b3039b571165e2844bf4a 394 PIRSF PIRSF000429 1 394 7.6E-110 T 14-10-2018 IPR002155 Thiolase GO:0016747 Amico_1210 0d7ee045639b3039b571165e2844bf4a 394 ProSitePatterns PS00099 Thiolases active site. 374 387 - T 14-10-2018 IPR020610 Thiolase, active site GO:0016747 Amico_1210 0d7ee045639b3039b571165e2844bf4a 394 TIGRFAM TIGR01930 AcCoA-C-Actrans: acetyl-CoA C-acyltransferase 6 391 4.0E-125 T 14-10-2018 IPR002155 Thiolase GO:0016747 Amico_1210 0d7ee045639b3039b571165e2844bf4a 394 Pfam PF02803 Thiolase, C-terminal domain 272 392 1.7E-45 T 14-10-2018 IPR020617 Thiolase, C-terminal GO:0016747 Amico_1210 0d7ee045639b3039b571165e2844bf4a 394 Gene3D G3DSA:3.40.47.10 126 390 5.5E-135 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_1210 0d7ee045639b3039b571165e2844bf4a 394 Gene3D G3DSA:3.40.47.10 6 276 5.5E-135 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_1210 0d7ee045639b3039b571165e2844bf4a 394 Pfam PF00108 Thiolase, N-terminal domain 5 263 1.0E-72 T 14-10-2018 IPR020616 Thiolase, N-terminal GO:0016747 Amico_0046 f7d161837c19559a8cf84796e58ab9ea 223 SUPERFAMILY SSF161098 14 200 1.96E-40 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0046 f7d161837c19559a8cf84796e58ab9ea 223 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 33 214 3.6E-18 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0046 f7d161837c19559a8cf84796e58ab9ea 223 Gene3D G3DSA:1.10.3720.10 7 215 6.3E-51 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0046 f7d161837c19559a8cf84796e58ab9ea 223 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 12 109 1.5E-28 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Amico_0769 7045728d577a1d76007544079c4cf62a 106 ProSitePatterns PS00409 Prokaryotic N-terminal methylation site. 6 26 - T 14-10-2018 IPR012902 Prokaryotic N-terminal methylation site Amico_1123 9e5887b2e2805ae352cc4fc7b260da4b 621 Pfam PF05876 Phage terminase large subunit (GpA) 30 583 4.1E-133 T 14-10-2018 IPR008866 Bacteriophage lambda, GpA Amico_1123 9e5887b2e2805ae352cc4fc7b260da4b 621 Gene3D G3DSA:3.40.50.300 18 215 1.8E-11 T 14-10-2018 Amico_1878 fd31bcbd8798b8f9850a57d5ee31f081 162 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 20 145 7.7E-24 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1355 69a9aef5f403ca7b6fa6b2d0ab3c8f31 187 Gene3D G3DSA:1.20.120.1630 5 148 5.2E-24 T 14-10-2018 Amico_1355 69a9aef5f403ca7b6fa6b2d0ab3c8f31 187 Pfam PF04191 Phospholipid methyltransferase 37 134 7.1E-13 T 14-10-2018 IPR007318 Phospholipid methyltransferase KEGG: 00564+2.1.1.17|MetaCyc: PWY-6825|Reactome: R-HSA-1483191 Amico_1730 5add553ee54df0e97b8445c663902aaf 470 Pfam PF14667 Polysaccharide biosynthesis C-terminal domain 327 444 3.9E-7 T 14-10-2018 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain Amico_1730 5add553ee54df0e97b8445c663902aaf 470 Pfam PF01943 Polysaccharide biosynthesis protein 12 262 8.4E-21 T 14-10-2018 IPR002797 Polysaccharide biosynthesis protein GO:0016020 Amico_1270 d18f8162335beaae0d499cef62c65b8e 160 Pfam PF04039 Domain related to MnhB subunit of Na+/H+ antiporter 7 133 2.0E-22 T 14-10-2018 IPR007182 Na+/H+ antiporter MnhB subunit-related protein Amico_0292 9ccf8d4653428799ac29a645ac74fbb5 560 SMART SM00646 396 554 1.1E-37 T 14-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Amico_0292 9ccf8d4653428799ac29a645ac74fbb5 560 SUPERFAMILY SSF53187 337 558 2.54E-48 T 14-10-2018 Amico_0292 9ccf8d4653428799ac29a645ac74fbb5 560 Pfam PF01520 N-acetylmuramoyl-L-alanine amidase 338 554 8.9E-53 T 14-10-2018 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain GO:0008745|GO:0009253 Amico_0292 9ccf8d4653428799ac29a645ac74fbb5 560 Gene3D G3DSA:3.40.630.40 327 560 3.3E-71 T 14-10-2018 Amico_1636 88b6c4fb0f764c696635e6b1d8f4939c 457 PIRSF PIRSF006603 1 453 6.6E-102 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1636 88b6c4fb0f764c696635e6b1d8f4939c 457 Pfam PF01554 MatE 23 184 9.1E-32 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1636 88b6c4fb0f764c696635e6b1d8f4939c 457 Pfam PF01554 MatE 267 404 2.5E-21 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_1636 88b6c4fb0f764c696635e6b1d8f4939c 457 TIGRFAM TIGR00797 matE: MATE efflux family protein 23 418 1.6E-64 T 14-10-2018 IPR002528 Multi antimicrobial extrusion protein GO:0006855|GO:0015238|GO:0015297|GO:0016020|GO:0055085 Reactome: R-HSA-425366 Amico_0926 dc3e9760362ed0436eeb5366c238f7d3 626 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 10 616 1.3E-191 T 14-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ Amico_0926 dc3e9760362ed0436eeb5366c238f7d3 626 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 114 552 5.8E-90 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_0190 e3d75e76d6c226f1bf0c262995b4702e 268 PIRSF PIRSF019254 1 267 3.8E-79 T 14-10-2018 IPR007544 Encapsulating protein for peroxidase GO:0008233|GO:0042742 Amico_0190 e3d75e76d6c226f1bf0c262995b4702e 268 Gene3D G3DSA:3.30.2400.30 2 256 5.5E-77 T 14-10-2018 Amico_0190 e3d75e76d6c226f1bf0c262995b4702e 268 Pfam PF04454 Encapsulating protein for peroxidase 1 253 9.6E-69 T 14-10-2018 IPR007544 Encapsulating protein for peroxidase GO:0008233|GO:0042742 Amico_0190 e3d75e76d6c226f1bf0c262995b4702e 268 Gene3D G3DSA:3.30.2320.10 133 262 5.5E-77 T 14-10-2018 Amico_1808 424b9c45c3d03a55570a36a83b6d17a9 1038 SUPERFAMILY SSF52540 1 1007 9.29E-12 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1808 424b9c45c3d03a55570a36a83b6d17a9 1038 Gene3D G3DSA:3.40.50.300 1 257 2.5E-18 T 14-10-2018 Amico_1808 424b9c45c3d03a55570a36a83b6d17a9 1038 Gene3D G3DSA:3.40.50.300 766 1017 2.8E-15 T 14-10-2018 Amico_1808 424b9c45c3d03a55570a36a83b6d17a9 1038 Pfam PF13476 AAA domain 8 231 2.0E-15 T 14-10-2018 IPR038729 Rad50/SbcC-type AAA domain Amico_0118 3d6a3dfa2fde242a34ce22e54f283b42 444 Hamap MF_01845 UPF0597 protein YhaM [yhaM]. 1 431 33.721 T 14-10-2018 IPR021144 Uncharacterised protein family UPF0597 Amico_0118 3d6a3dfa2fde242a34ce22e54f283b42 444 PIRSF PIRSF006054 3 433 2.7E-126 T 14-10-2018 IPR021144 Uncharacterised protein family UPF0597 Amico_0118 3d6a3dfa2fde242a34ce22e54f283b42 444 Pfam PF03313 Serine dehydratase alpha chain 165 426 4.3E-47 T 14-10-2018 IPR005130 Serine dehydratase-like, alpha subunit Amico_1112 f906b5d2bbfcd26a4939085ee1a4f8cb 93 Pfam PF10109 Phage tail assembly chaperone proteins, E, or 41 or 14 3 89 2.8E-7 T 14-10-2018 IPR019289 Bacteriophage tail protein Gp41, putative Amico_1054 67ab1c26e8693100ba162c7344f27a71 606 SUPERFAMILY SSF50494 37 150 6.4E-5 T 14-10-2018 IPR009003 Peptidase S1, PA clan Amico_1054 67ab1c26e8693100ba162c7344f27a71 606 Pfam PF05580 SpoIVB peptidase S55 37 141 5.0E-14 T 14-10-2018 IPR008763 Peptidase S55, SpoIVB Amico_0660 f6a730ca45ca5672e7fdcf4891ecea6e 270 Pfam PF02361 Cobalt transport protein 16 235 1.5E-44 T 14-10-2018 IPR003339 ABC/ECF transporter, transmembrane component Amico_1432 5f2f5519e0f7a12df6acd5e1bce22efc 297 Pfam PF02653 Branched-chain amino acid transport system / permease component 10 281 8.3E-48 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Amico_0281 9013851550abe71ba30aa3e8334e4dd1 555 Pfam PF02690 Na+/Pi-cotransporter 17 151 8.1E-25 T 14-10-2018 IPR003841 Sodium-dependent phosphate transport protein GO:0015321|GO:0016020|GO:0044341 Reactome: R-HSA-427589 Amico_1863 1e80d1bd17f0b7517cea7c0286e9025f 279 PRINTS PR00690 Adhesin family signature 176 197 1.3E-5 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Amico_1863 1e80d1bd17f0b7517cea7c0286e9025f 279 PRINTS PR00690 Adhesin family signature 227 245 1.3E-5 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Amico_1863 1e80d1bd17f0b7517cea7c0286e9025f 279 PRINTS PR00690 Adhesin family signature 62 75 1.3E-5 T 14-10-2018 IPR006128 Adhesion lipoprotein GO:0007155 Amico_1863 1e80d1bd17f0b7517cea7c0286e9025f 279 SUPERFAMILY SSF53807 32 278 4.71E-70 T 14-10-2018 Amico_1863 1e80d1bd17f0b7517cea7c0286e9025f 279 Pfam PF01297 Zinc-uptake complex component A periplasmic 34 258 1.1E-58 T 14-10-2018 IPR006127 Periplasmic solute binding protein, ZnuA-like GO:0030001|GO:0046872 Amico_1863 1e80d1bd17f0b7517cea7c0286e9025f 279 Gene3D G3DSA:3.40.50.1980 178 278 6.7E-34 T 14-10-2018 Amico_1863 1e80d1bd17f0b7517cea7c0286e9025f 279 Gene3D G3DSA:3.40.50.1980 30 176 1.4E-44 T 14-10-2018 Amico_0517 0e7036e76e0d1ef72bdd8e87437bb26b 66 SUPERFAMILY SSF54862 2 64 9.49E-17 T 14-10-2018 Amico_0517 0e7036e76e0d1ef72bdd8e87437bb26b 66 Pfam PF12838 4Fe-4S dicluster domain 10 58 5.4E-11 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_0517 0e7036e76e0d1ef72bdd8e87437bb26b 66 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_0517 0e7036e76e0d1ef72bdd8e87437bb26b 66 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 47 58 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_0517 0e7036e76e0d1ef72bdd8e87437bb26b 66 Gene3D G3DSA:3.30.70.20 1 26 1.8E-7 T 14-10-2018 Amico_0517 0e7036e76e0d1ef72bdd8e87437bb26b 66 Gene3D G3DSA:3.30.70.20 27 66 3.4E-6 T 14-10-2018 Amico_1364 71748a1ce75e8f67cc9f4ad4d19ac0cd 315 Pfam PF01458 Uncharacterized protein family (UPF0051) 92 312 1.2E-37 T 14-10-2018 IPR000825 SUF system FeS cluster assembly, SufBD GO:0016226 Amico_1364 71748a1ce75e8f67cc9f4ad4d19ac0cd 315 SUPERFAMILY SSF101960 60 314 2.09E-44 T 14-10-2018 IPR037284 SUF system FeS cluster assembly, SufBD superfamily Amico_1479 ba5d35894b8e717cdbc33dd79a1b902c 164 Gene3D G3DSA:1.10.1760.20 3 157 2.3E-40 T 14-10-2018 Amico_1479 ba5d35894b8e717cdbc33dd79a1b902c 164 Pfam PF07155 ECF-type riboflavin transporter, S component 9 153 8.2E-33 T 14-10-2018 IPR009825 ECF transporter, substrate-specific component-like GO:0016020 Amico_0994 55f3ad4ad2e6b98fa978182cea964355 526 Pfam PF03808 Glycosyl transferase WecB/TagA/CpsF family 341 506 8.3E-65 T 14-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 Amico_0994 55f3ad4ad2e6b98fa978182cea964355 526 TIGRFAM TIGR00696 wecG_tagA_cpsF: glycosyltransferase, WecB/TagA/CpsF family 335 509 2.3E-58 T 14-10-2018 IPR004629 Glycosyl transferase WecB/TagA/CpsF GO:0009058 Amico_0223 123c6d3f43d1ad5cbdd2d6ce0f9aac9c 362 TIGRFAM TIGR04332 gamma_Glu_sys: poly-gamma-glutamate system protein 26 322 2.8E-107 T 14-10-2018 IPR027602 Poly-gamma-glutamate system protein Amico_0536 2e9515f149ade48db701bd879faff41d 204 SUPERFAMILY SSF56300 26 161 1.24E-10 T 14-10-2018 Amico_0536 2e9515f149ade48db701bd879faff41d 204 Pfam PF00149 Calcineurin-like phosphoesterase 29 145 1.2E-8 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Amico_0536 2e9515f149ade48db701bd879faff41d 204 Gene3D G3DSA:3.60.21.10 11 136 3.2E-7 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Amico_1668 7c218b5342758541230f34746b312cd3 220 Gene3D G3DSA:1.10.3720.10 5 215 4.9E-45 T 14-10-2018 IPR035906 MetI-like superfamily Amico_1668 7c218b5342758541230f34746b312cd3 220 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 48 202 5.5E-19 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_1668 7c218b5342758541230f34746b312cd3 220 SUPERFAMILY SSF161098 11 208 6.28E-43 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0562 6a9ade03a1103c9bbcefb9ee8b36569f 160 Gene3D G3DSA:1.10.1200.150 79 160 2.0E-6 T 14-10-2018 Amico_0562 6a9ade03a1103c9bbcefb9ee8b36569f 160 Pfam PF05848 Firmicute transcriptional repressor of class III stress genes (CtsR) 3 156 1.0E-48 T 14-10-2018 IPR008463 Transcriptional repressor of class III stress genes GO:0003677|GO:0006355 Amico_0562 6a9ade03a1103c9bbcefb9ee8b36569f 160 Gene3D G3DSA:1.10.10.1240 2 73 7.3E-30 T 14-10-2018 Amico_0052 84e673f5c02475018d5bb218f09db23d 374 Pfam PF04101 Glycosyltransferase family 28 C-terminal domain 213 322 2.2E-13 T 14-10-2018 IPR007235 Glycosyl transferase, family 28, C-terminal GO:0016758 KEGG: 00550+2.4.1.227|MetaCyc: PWY-5265|MetaCyc: PWY-6385|MetaCyc: PWY-6470|MetaCyc: PWY-6471|Reactome: R-HSA-446193|Reactome: R-HSA-5633231 Amico_0052 84e673f5c02475018d5bb218f09db23d 374 SUPERFAMILY SSF53756 87 365 9.82E-25 T 14-10-2018 Amico_0052 84e673f5c02475018d5bb218f09db23d 374 Gene3D G3DSA:3.40.50.2000 203 352 7.7E-25 T 14-10-2018 Amico_0052 84e673f5c02475018d5bb218f09db23d 374 Pfam PF06925 Monogalactosyldiacylglycerol (MGDG) synthase 15 181 4.8E-25 T 14-10-2018 IPR009695 Diacylglycerol glucosyltransferase, N-terminal GO:0009247|GO:0016758 Amico_0798 3270887dacb4b5e02130642e323f9805 116 Gene3D G3DSA:3.30.70.120 1 110 1.7E-7 T 14-10-2018 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal Amico_0798 3270887dacb4b5e02130642e323f9805 116 SUPERFAMILY SSF54913 4 110 3.5E-9 T 14-10-2018 IPR011322 Nitrogen regulatory PII-like, alpha/beta Amico_1092 9244eed8242e5a2a38b7fa7cf228799c 257 Pfam PF02616 Segregation and condensation protein ScpA 25 253 3.9E-12 T 14-10-2018 IPR003768 Segregation and condensation protein A Amico_0892 984230775c0100decf6263d1e8ebe8f0 256 Gene3D G3DSA:3.60.140.10 38 253 8.8E-33 T 14-10-2018 IPR038371 Multi-copper polyphenol oxidoreductase superfamily Amico_0892 984230775c0100decf6263d1e8ebe8f0 256 Pfam PF02578 Multi-copper polyphenol oxidoreductase laccase 61 246 1.4E-27 T 14-10-2018 IPR003730 Multi-copper polyphenol oxidoreductase Amico_0892 984230775c0100decf6263d1e8ebe8f0 256 SUPERFAMILY SSF64438 62 249 1.06E-30 T 14-10-2018 IPR011324 Cytotoxic necrotizing factor-like, catalytic Amico_0384 899fa19b291075d134bd5c913842a45e 231 Pfam PF04298 Putative neutral zinc metallopeptidase 10 223 5.8E-89 T 14-10-2018 IPR007395 Putative neutral zinc metallopeptidase Amico_1845 c76369c6d6d78576792063a2b9e4a215 286 SUPERFAMILY SSF103481 37 137 2.09E-11 T 14-10-2018 Amico_1845 c76369c6d6d78576792063a2b9e4a215 286 Pfam PF00892 EamA-like transporter family 11 134 2.0E-11 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_1845 c76369c6d6d78576792063a2b9e4a215 286 Pfam PF00892 EamA-like transporter family 152 283 1.9E-11 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_1845 c76369c6d6d78576792063a2b9e4a215 286 SUPERFAMILY SSF103481 187 283 1.57E-6 T 14-10-2018 Amico_0679 979f00c36de9387ed2d124cf83632ffb 239 SUPERFAMILY SSF51366 1 233 6.73E-53 T 14-10-2018 IPR011060 Ribulose-phosphate binding barrel GO:0003824 Amico_0679 979f00c36de9387ed2d124cf83632ffb 239 Pfam PF00977 Histidine biosynthesis protein 3 227 9.6E-53 T 14-10-2018 IPR006062 Histidine biosynthesis GO:0000105 Amico_0679 979f00c36de9387ed2d124cf83632ffb 239 Gene3D G3DSA:3.20.20.70 2 238 9.4E-66 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0679 979f00c36de9387ed2d124cf83632ffb 239 Hamap MF_01014 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase [hisA]. 2 235 28.411 T 14-10-2018 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase GO:0000105|GO:0003949 KEGG: 00340+5.3.1.16 Amico_0090 8601fb663d8c1c8a8834aa08b7242ec4 426 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 420 2.7E-144 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0090 8601fb663d8c1c8a8834aa08b7242ec4 426 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 6 415 1.9E-128 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_0090 8601fb663d8c1c8a8834aa08b7242ec4 426 PIRSF PIRSF006066 1 426 4.1E-171 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0793 82b616be083632128f8ff9fb45ad2c0b 241 Gene3D G3DSA:3.30.420.40 5 221 5.2E-32 T 14-10-2018 Amico_0793 82b616be083632128f8ff9fb45ad2c0b 241 Pfam PF00814 Glycoprotease family 39 157 4.1E-19 T 14-10-2018 IPR000905 Gcp-like domain Amico_0793 82b616be083632128f8ff9fb45ad2c0b 241 TIGRFAM TIGR03725 T6A_YeaZ: tRNA threonylcarbamoyl adenosine modification protein YeaZ 5 220 3.1E-31 T 14-10-2018 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB GO:0002949 Amico_0793 82b616be083632128f8ff9fb45ad2c0b 241 SUPERFAMILY SSF53067 4 103 1.55E-19 T 14-10-2018 Amico_0793 82b616be083632128f8ff9fb45ad2c0b 241 Gene3D G3DSA:3.30.420.40 97 191 5.2E-32 T 14-10-2018 Amico_1196 c0d89a2a772c38d98b4cc42d0c4552b2 127 Pfam PF02643 Uncharacterized ACR, COG1430 34 125 5.2E-16 T 14-10-2018 IPR003795 Protein of unknown function DUF192 Amico_0990 09659cce4e54cbfe9d8856a3d0932c6b 72 Pfam PF00137 ATP synthase subunit C 8 67 7.6E-14 T 14-10-2018 IPR002379 V-ATPase proteolipid subunit C-like domain GO:0015078|GO:0015991|GO:0033177 Amico_0990 09659cce4e54cbfe9d8856a3d0932c6b 72 Gene3D G3DSA:1.20.120.610 1 70 9.2E-16 T 14-10-2018 Amico_0990 09659cce4e54cbfe9d8856a3d0932c6b 72 SUPERFAMILY SSF81333 3 69 3.14E-12 T 14-10-2018 IPR035921 F/V-ATP synthase subunit C superfamily Amico_0468 e317e5bc8a1a12313fb1a28ebaf41155 512 PIRSF PIRSF002741 26 508 3.9E-70 T 14-10-2018 IPR030678 Peptide/nickel binding protein, MppA-type GO:0043190|GO:0055085 Amico_0468 e317e5bc8a1a12313fb1a28ebaf41155 512 Gene3D G3DSA:3.40.190.10 60 494 2.3E-95 T 14-10-2018 Amico_0468 e317e5bc8a1a12313fb1a28ebaf41155 512 Gene3D G3DSA:3.10.105.10 254 482 2.3E-95 T 14-10-2018 Amico_0468 e317e5bc8a1a12313fb1a28ebaf41155 512 SUPERFAMILY SSF53850 29 505 5.25E-103 T 14-10-2018 Amico_0468 e317e5bc8a1a12313fb1a28ebaf41155 512 Pfam PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle 69 405 5.4E-71 T 14-10-2018 IPR000914 Solute-binding protein family 5 domain Amico_0354 3fee1ac5a79d3999b7a74c70929049eb 294 Pfam PF00892 EamA-like transporter family 11 139 6.3E-23 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_0354 3fee1ac5a79d3999b7a74c70929049eb 294 Pfam PF00892 EamA-like transporter family 154 289 3.0E-26 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_0354 3fee1ac5a79d3999b7a74c70929049eb 294 SUPERFAMILY SSF103481 40 142 1.9E-12 T 14-10-2018 Amico_0354 3fee1ac5a79d3999b7a74c70929049eb 294 SUPERFAMILY SSF103481 195 292 1.18E-18 T 14-10-2018 Amico_1269 9ccf2e29f6fb4a9e32f9864e68541e6d 115 Pfam PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L 7 112 1.8E-28 T 14-10-2018 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like Amico_0428 a016429d18ffc5bc78dbf6adada9e7fa 500 TIGRFAM TIGR02231 TIGR02231: conserved hypothetical protein 28 497 1.3E-41 T 14-10-2018 IPR011935 Conserved hypothetical protein CHP02231 Amico_0428 a016429d18ffc5bc78dbf6adada9e7fa 500 Pfam PF13598 Domain of unknown function (DUF4139) 201 492 7.6E-33 T 14-10-2018 IPR037291 Domain of unknown function DUF4139 Amico_1250 b9603641f80573b6bfed02a66974fa98 359 SUPERFAMILY SSF48179 187 358 7.14E-43 T 14-10-2018 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily GO:0055114 Amico_1250 b9603641f80573b6bfed02a66974fa98 359 SUPERFAMILY SSF51735 1 178 5.58E-16 T 14-10-2018 IPR036291 NAD(P)-binding domain superfamily Amico_1250 b9603641f80573b6bfed02a66974fa98 359 Pfam PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain 185 329 9.2E-44 T 14-10-2018 IPR003421 Opine dehydrogenase GO:0016491|GO:0050662|GO:0055114 Amico_1250 b9603641f80573b6bfed02a66974fa98 359 Gene3D G3DSA:3.40.50.720 1 193 1.4E-60 T 14-10-2018 Amico_1250 b9603641f80573b6bfed02a66974fa98 359 Gene3D G3DSA:1.10.1040.10 195 349 7.2E-52 T 14-10-2018 IPR013328 6-phosphogluconate dehydrogenase, domain 2 GO:0016491|GO:0055114 Amico_1250 b9603641f80573b6bfed02a66974fa98 359 Pfam PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus 4 105 5.6E-8 T 14-10-2018 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal GO:0016616|GO:0046168|GO:0051287|GO:0055114 KEGG: 00564+1.1.1.94|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7902|Reactome: R-HSA-1483166 Amico_0227 63d860f1e809a5dbd4b8301cccfca7ec 397 Gene3D G3DSA:3.90.1150.10 19 392 3.4E-114 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0227 63d860f1e809a5dbd4b8301cccfca7ec 397 SUPERFAMILY SSF53383 3 396 1.57E-93 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0227 63d860f1e809a5dbd4b8301cccfca7ec 397 Gene3D G3DSA:3.40.640.10 64 285 3.4E-114 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0227 63d860f1e809a5dbd4b8301cccfca7ec 397 Pfam PF00155 Aminotransferase class I and II 32 389 4.5E-35 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_0848 edc31de33c10d6abd20296a5d321b337 293 Hamap MF_00361 NAD kinase [nadK]. 3 282 29.886 T 14-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Amico_0848 edc31de33c10d6abd20296a5d321b337 293 SUPERFAMILY SSF111331 4 285 1.44E-78 T 14-10-2018 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily Amico_0848 edc31de33c10d6abd20296a5d321b337 293 Gene3D G3DSA:3.40.50.10330 21 282 3.8E-78 T 14-10-2018 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal GO:0003951 Amico_0848 edc31de33c10d6abd20296a5d321b337 293 Pfam PF01513 ATP-NAD kinase 5 262 4.6E-51 T 14-10-2018 IPR002504 NAD kinase GO:0003951|GO:0006741 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Amico_0848 edc31de33c10d6abd20296a5d321b337 293 Gene3D G3DSA:2.60.200.30 122 258 3.8E-78 T 14-10-2018 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal GO:0003951|GO:0019674 KEGG: 00760+2.7.1.23|MetaCyc: PWY-5083|MetaCyc: PWY-7268|MetaCyc: PWY-7269|Reactome: R-HSA-196807 Amico_0406 e7fb28d5791c6c3497ca2f9667e78d2b 168 Gene3D G3DSA:3.40.140.10 4 157 5.2E-47 T 14-10-2018 Amico_0406 e7fb28d5791c6c3497ca2f9667e78d2b 168 Pfam PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region 7 126 6.4E-29 T 14-10-2018 IPR002125 Cytidine and deoxycytidylate deaminase domain Amico_0406 e7fb28d5791c6c3497ca2f9667e78d2b 168 SUPERFAMILY SSF53927 9 155 1.12E-43 T 14-10-2018 IPR016193 Cytidine deaminase-like GO:0003824 Amico_0406 e7fb28d5791c6c3497ca2f9667e78d2b 168 ProSitePatterns PS00903 Cytidine and deoxycytidylate deaminases zinc-binding region signature. 80 115 - T 14-10-2018 IPR016192 APOBEC/CMP deaminase, zinc-binding GO:0008270|GO:0016787 Amico_0406 e7fb28d5791c6c3497ca2f9667e78d2b 168 PIRSF PIRSF006019 1 158 3.2E-52 T 14-10-2018 IPR016473 Deoxycytidylate deaminase GO:0004132|GO:0006220|GO:0008270 KEGG: 00240+3.5.4.12|MetaCyc: PWY-7210|Reactome: R-HSA-499943 Amico_0911 5732ffcd56e8655aadf54014e7dcb1a7 109 Pfam PF06262 Zincin-like metallopeptidase 51 97 4.9E-8 T 14-10-2018 IPR010428 Zincin-like metallopeptidase Amico_0911 5732ffcd56e8655aadf54014e7dcb1a7 109 Gene3D G3DSA:3.30.2010.20 1 108 2.0E-31 T 14-10-2018 IPR038555 Zincin-like metallopeptidase superfamily Amico_0911 5732ffcd56e8655aadf54014e7dcb1a7 109 SUPERFAMILY SSF55486 3 96 6.23E-18 T 14-10-2018 Amico_1276 6b23faf8431917477fd0bb6ac2e76079 306 SUPERFAMILY SSF103481 45 144 7.19E-6 T 14-10-2018 Amico_1276 6b23faf8431917477fd0bb6ac2e76079 306 SUPERFAMILY SSF103481 195 289 3.92E-13 T 14-10-2018 Amico_1276 6b23faf8431917477fd0bb6ac2e76079 306 Pfam PF00892 EamA-like transporter family 16 141 3.3E-14 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_1276 6b23faf8431917477fd0bb6ac2e76079 306 Pfam PF00892 EamA-like transporter family 154 287 4.1E-18 T 14-10-2018 IPR000620 EamA domain GO:0016020|GO:0016021 Amico_1841 4e12609c19166234bd5f2675a34b862d 302 Gene3D G3DSA:3.40.718.10 5 301 1.1E-95 T 14-10-2018 Amico_1841 4e12609c19166234bd5f2675a34b862d 302 Pfam PF01515 Phosphate acetyl/butaryl transferase 78 295 1.3E-43 T 14-10-2018 IPR002505 Phosphate acetyl/butaryl transferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Amico_1841 4e12609c19166234bd5f2675a34b862d 302 SUPERFAMILY SSF53659 5 299 4.7E-55 T 14-10-2018 Amico_1841 4e12609c19166234bd5f2675a34b862d 302 PIRSF PIRSF000428 1 302 2.8E-77 T 14-10-2018 IPR012147 Phosphate acetyl/butyryltransferase GO:0016746 KEGG: 00430+2.3.1.8|KEGG: 00620+2.3.1.8|KEGG: 00640+2.3.1.8|KEGG: 00680+2.3.1.8|KEGG: 00720+2.3.1.8|MetaCyc: PWY-1281|MetaCyc: PWY-5482|MetaCyc: PWY-5485|MetaCyc: PWY-5497|MetaCyc: PWY-6637 Amico_1365 124370a123c72ce335ab54e0a1b1c0dc 257 Gene3D G3DSA:3.40.50.300 4 230 7.4E-54 T 14-10-2018 Amico_1365 124370a123c72ce335ab54e0a1b1c0dc 257 SUPERFAMILY SSF52540 5 225 1.3E-49 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1365 124370a123c72ce335ab54e0a1b1c0dc 257 Pfam PF00005 ABC transporter 21 164 3.6E-23 T 14-10-2018 IPR003439 ABC transporter-like GO:0005524|GO:0016887 Amico_1365 124370a123c72ce335ab54e0a1b1c0dc 257 ProSitePatterns PS00211 ABC transporters family signature. 137 151 - T 14-10-2018 IPR017871 ABC transporter, conserved site GO:0005524|GO:0016887 Amico_1152 b78aa1bccea67ab1983dc22addcd7e44 60 Gene3D G3DSA:3.30.70.20 1 60 8.3E-20 T 14-10-2018 Amico_1152 b78aa1bccea67ab1983dc22addcd7e44 60 SUPERFAMILY SSF54862 2 59 1.46E-12 T 14-10-2018 Amico_1152 b78aa1bccea67ab1983dc22addcd7e44 60 ProSitePatterns PS00198 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 10 21 - T 14-10-2018 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site Amico_1152 b78aa1bccea67ab1983dc22addcd7e44 60 PRINTS PR00352 3Fe-4S ferredoxin signature 16 26 1.7E-9 T 14-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 Amico_1152 b78aa1bccea67ab1983dc22addcd7e44 60 PRINTS PR00352 3Fe-4S ferredoxin signature 5 16 1.7E-9 T 14-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 Amico_1152 b78aa1bccea67ab1983dc22addcd7e44 60 PRINTS PR00352 3Fe-4S ferredoxin signature 44 56 1.7E-9 T 14-10-2018 IPR001080 3Fe-4S ferredoxin GO:0005506|GO:0009055 Amico_1152 b78aa1bccea67ab1983dc22addcd7e44 60 Pfam PF13370 4Fe-4S single cluster domain of Ferredoxin I 6 58 1.2E-15 T 14-10-2018 Amico_1765 4cb600f501849e609f2caa3f22e6e8e5 404 Pfam PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family 55 190 1.5E-7 T 14-10-2018 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase Amico_1765 4cb600f501849e609f2caa3f22e6e8e5 404 SUPERFAMILY SSF53383 20 399 4.03E-30 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0571 265e1f9e4155a0bb8345f030202bc927 418 SUPERFAMILY SSF51569 30 320 6.59E-37 T 14-10-2018 Amico_0571 265e1f9e4155a0bb8345f030202bc927 418 Pfam PF01116 Fructose-bisphosphate aldolase class-II 34 313 1.7E-35 T 14-10-2018 IPR000771 Fructose-bisphosphate aldolase, class-II GO:0005975|GO:0008270|GO:0016832 Amico_0571 265e1f9e4155a0bb8345f030202bc927 418 Gene3D G3DSA:3.20.20.70 26 320 8.2E-47 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0915 a0013037c392a2cd866279b779d33fed 422 Pfam PF04412 Protein of unknown function (DUF521) 2 411 1.8E-118 T 14-10-2018 IPR007506 Aconitase X catalytic domain, putative Amico_0915 a0013037c392a2cd866279b779d33fed 422 SUPERFAMILY SSF53732 298 371 3.79E-5 T 14-10-2018 IPR036008 Aconitase, iron-sulfur domain KEGG: 00290+4.2.1.33 Amico_0915 a0013037c392a2cd866279b779d33fed 422 Gene3D G3DSA:3.30.499.10 290 422 3.2E-7 T 14-10-2018 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 KEGG: 00290+4.2.1.33 Amico_1643 0ce3d02c9e94e58446d41ad5aa6b075f 977 Pfam PF12705 PD-(D/E)XK nuclease superfamily 699 963 1.4E-24 T 14-10-2018 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type Amico_1643 0ce3d02c9e94e58446d41ad5aa6b075f 977 SUPERFAMILY SSF52540 276 631 3.05E-7 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_1511 84b0b1867ead97f049366231d689adb9 674 Pfam PF00144 Beta-lactamase 55 364 2.1E-59 T 14-10-2018 IPR001466 Beta-lactamase-related Amico_1511 84b0b1867ead97f049366231d689adb9 674 SUPERFAMILY SSF56601 40 360 5.93E-71 T 14-10-2018 IPR012338 Beta-lactamase/transpeptidase-like Amico_1511 84b0b1867ead97f049366231d689adb9 674 Gene3D G3DSA:3.40.710.10 36 376 9.8E-73 T 14-10-2018 Amico_1101 9c880532e7cb92220b74071722e018e1 198 Pfam PF14301 Domain of unknown function (DUF4376) 98 194 5.7E-26 T 14-10-2018 IPR025484 Domain of unknown function DUF4376 Amico_1483 2bd29f268f5c062e68646a7f8e2778fe 175 SUPERFAMILY SSF56935 35 175 1.83E-5 T 14-10-2018 Amico_0863 4173abbb8c6044896c2eb6a497c466eb 74 Pfam PF11146 Protein of unknown function (DUF2905) 5 69 1.4E-21 T 14-10-2018 IPR021320 Protein of unknown function DUF2905 Amico_0209 d6d41f76ba62a0c537c579048b16a97b 179 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 28 160 9.7E-9 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1879 6eacfd01c7961dd46f6e0fa65b753675 423 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 5 413 6.5E-110 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1879 6eacfd01c7961dd46f6e0fa65b753675 423 PIRSF PIRSF006066 1 423 1.0E-148 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1879 6eacfd01c7961dd46f6e0fa65b753675 423 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 14 418 2.6E-133 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_1829 29dfa514a9ba8079dc40ef1bbd8086f7 307 Gene3D G3DSA:3.20.20.70 1 293 3.3E-105 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_1829 29dfa514a9ba8079dc40ef1bbd8086f7 307 SUPERFAMILY SSF51569 1 291 2.72E-85 T 14-10-2018 Amico_1829 29dfa514a9ba8079dc40ef1bbd8086f7 307 Pfam PF00701 Dihydrodipicolinate synthetase family 4 290 6.3E-64 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_1829 29dfa514a9ba8079dc40ef1bbd8086f7 307 SMART SM01130 3 294 4.1E-93 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_1829 29dfa514a9ba8079dc40ef1bbd8086f7 307 PIRSF PIRSF001365 1 300 2.3E-78 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_1829 29dfa514a9ba8079dc40ef1bbd8086f7 307 ProSitePatterns PS00666 Dihydrodipicolinate synthase signature 2. 137 167 - T 14-10-2018 IPR020625 Schiff base-forming aldolase, active site GO:0016829 KEGG: 00261+4.3.3.7|KEGG: 00300+4.3.3.7|MetaCyc: PWY-2941|MetaCyc: PWY-2942|MetaCyc: PWY-5097|Reactome: R-HSA-389661 Amico_1829 29dfa514a9ba8079dc40ef1bbd8086f7 307 PRINTS PR00146 Dihydrodipicolinate synthase signature 37 58 7.8E-17 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_1829 29dfa514a9ba8079dc40ef1bbd8086f7 307 PRINTS PR00146 Dihydrodipicolinate synthase signature 132 149 7.8E-17 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_1829 29dfa514a9ba8079dc40ef1bbd8086f7 307 PRINTS PR00146 Dihydrodipicolinate synthase signature 73 91 7.8E-17 T 14-10-2018 IPR002220 DapA-like GO:0016829 Amico_1587 9250e8e7e0779930a46c256f3efccbd2 156 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 21 149 1.1E-28 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_0663 3b43baa7e2fe15d8ccd654f4825a860b 144 Pfam PF03692 Putative zinc- or iron-chelating domain 15 116 8.6E-13 T 14-10-2018 IPR005358 Putative zinc- or iron-chelating domain containing protein Amico_1185 d8f376c103b7ae4de77ab3b193f5897c 433 PIRSF PIRSF005353 1 433 1.1E-178 T 14-10-2018 IPR026033 Purine permease PbuG-like Amico_1185 d8f376c103b7ae4de77ab3b193f5897c 433 Pfam PF00860 Permease family 20 396 3.3E-45 T 14-10-2018 IPR006043 Xanthine/uracil/vitamin C permease GO:0016020|GO:0022857|GO:0055085 Amico_0829 cb6358c367d0fa84b3ad516fb1e5d81a 163 SUPERFAMILY SSF55040 11 155 9.81E-55 T 14-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0829 cb6358c367d0fa84b3ad516fb1e5d81a 163 TIGRFAM TIGR00581 moaC: molybdenum cofactor biosynthesis protein C 4 152 1.4E-54 T 14-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0829 cb6358c367d0fa84b3ad516fb1e5d81a 163 Hamap MF_01224_B Cyclic pyranopterin monophosphate synthase [moaC]. 2 158 32.162 T 14-10-2018 IPR023045 Molybdenum cofactor biosynthesis C GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0829 cb6358c367d0fa84b3ad516fb1e5d81a 163 Pfam PF01967 MoaC family 15 150 3.6E-50 T 14-10-2018 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_0829 cb6358c367d0fa84b3ad516fb1e5d81a 163 Gene3D G3DSA:3.30.70.640 1 161 1.4E-62 T 14-10-2018 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily GO:0006777 KEGG: 00790+4.6.1.17|MetaCyc: PWY-6823|Reactome: R-HSA-947581 Amico_1323 916d86e412b4a5dbdf41eebb019d7104 398 Gene3D G3DSA:3.30.1540.10 233 324 2.9E-142 T 14-10-2018 Amico_1323 916d86e412b4a5dbdf41eebb019d7104 398 Gene3D G3DSA:3.40.50.10540 7 392 2.9E-142 T 14-10-2018 IPR023606 CoA-transferase family III domain superfamily Amico_1323 916d86e412b4a5dbdf41eebb019d7104 398 Pfam PF02515 CoA-transferase family III 7 374 2.1E-133 T 14-10-2018 IPR003673 CoA-transferase family III GO:0003824 Amico_1323 916d86e412b4a5dbdf41eebb019d7104 398 SUPERFAMILY SSF89796 3 398 1.57E-134 T 14-10-2018 IPR023606 CoA-transferase family III domain superfamily Amico_1606 cd56cbb113942682901a56f6bd8ba0a5 279 SUPERFAMILY SSF53474 15 275 5.36E-35 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Amico_1606 cd56cbb113942682901a56f6bd8ba0a5 279 Gene3D G3DSA:3.40.50.1820 12 277 7.9E-31 T 14-10-2018 IPR029058 Alpha/Beta hydrolase fold Amico_1606 cd56cbb113942682901a56f6bd8ba0a5 279 Pfam PF12697 Alpha/beta hydrolase family 49 152 1.2E-7 T 14-10-2018 IPR000073 Alpha/beta hydrolase fold-1 Amico_0165 200fa1e44771e36096eeea24f134b674 228 SUPERFAMILY SSF69572 4 227 6.02E-65 T 14-10-2018 IPR035985 Ubiquitin-activating enzyme GO:0008641 Amico_0165 200fa1e44771e36096eeea24f134b674 228 Pfam PF00899 ThiF family 6 227 3.1E-44 T 14-10-2018 IPR000594 THIF-type NAD/FAD binding fold GO:0008641 Amico_0165 200fa1e44771e36096eeea24f134b674 228 Gene3D G3DSA:3.40.50.720 3 228 2.6E-55 T 14-10-2018 Amico_0250 500065439d51476788b873e25cd68e91 175 SUPERFAMILY SSF55469 6 165 9.42E-43 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Amico_0250 500065439d51476788b873e25cd68e91 175 Pfam PF00881 Nitroreductase family 12 66 2.3E-14 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Amico_0250 500065439d51476788b873e25cd68e91 175 Pfam PF00881 Nitroreductase family 71 154 6.7E-11 T 14-10-2018 IPR029479 Nitroreductase Reactome: R-HSA-209968 Amico_0250 500065439d51476788b873e25cd68e91 175 Gene3D G3DSA:3.40.109.10 2 175 3.0E-48 T 14-10-2018 IPR000415 Nitroreductase-like GO:0016491 Reactome: R-HSA-209968 Amico_0186 9ebf1a9b74e2bf1c86a792698d867838 157 SUPERFAMILY SSF55729 20 153 1.01E-14 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Amico_0186 9ebf1a9b74e2bf1c86a792698d867838 157 Gene3D G3DSA:3.40.630.30 7 154 8.5E-28 T 14-10-2018 Amico_0186 9ebf1a9b74e2bf1c86a792698d867838 157 Pfam PF00583 Acetyltransferase (GNAT) family 23 130 7.3E-9 T 14-10-2018 IPR000182 GNAT domain Amico_1284 d4279a6b12802bb95b9b1a19afc30fd3 275 Pfam PF00149 Calcineurin-like phosphoesterase 4 202 5.2E-12 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Amico_1284 d4279a6b12802bb95b9b1a19afc30fd3 275 SUPERFAMILY SSF56300 3 237 2.22E-29 T 14-10-2018 Amico_1284 d4279a6b12802bb95b9b1a19afc30fd3 275 Gene3D G3DSA:3.60.21.10 3 236 4.9E-18 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Amico_1687 9f78bb3a27374c648a3bf019dcb3f242 378 Pfam PF00149 Calcineurin-like phosphoesterase 154 314 1.3E-8 T 14-10-2018 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type GO:0016787 Amico_1687 9f78bb3a27374c648a3bf019dcb3f242 378 SUPERFAMILY SSF56300 154 370 3.12E-31 T 14-10-2018 Amico_1687 9f78bb3a27374c648a3bf019dcb3f242 378 Gene3D G3DSA:3.60.21.10 153 350 4.7E-17 T 14-10-2018 IPR029052 Metallo-dependent phosphatase-like Amico_1445 1a0b24aba428e059fe587fa0d3833333 407 ProSitePatterns PS00793 Dihydropteroate synthase signature 2. 178 191 - T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Amico_1445 1a0b24aba428e059fe587fa0d3833333 407 Pfam PF00809 Pterin binding enzyme 143 387 2.4E-76 T 14-10-2018 IPR000489 Pterin-binding domain GO:0042558 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Amico_1445 1a0b24aba428e059fe587fa0d3833333 407 Gene3D G3DSA:3.20.20.20 122 406 1.1E-101 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Amico_1445 1a0b24aba428e059fe587fa0d3833333 407 TIGRFAM TIGR01496 DHPS: dihydropteroate synthase 141 401 1.7E-94 T 14-10-2018 IPR006390 Dihydropteroate synthase GO:0004156|GO:0009396 KEGG: 00790+2.5.1.15|MetaCyc: PWY-6614 Amico_1445 1a0b24aba428e059fe587fa0d3833333 407 SUPERFAMILY SSF51717 136 404 1.7E-90 T 14-10-2018 IPR011005 Dihydropteroate synthase-like GO:0044237 Reactome: R-HSA-156581|Reactome: R-HSA-1614635|Reactome: R-HSA-196741|Reactome: R-HSA-3359467|Reactome: R-HSA-3359469 Amico_0962 e3ed0883ead3c542248c8204210335cc 656 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 141 578 1.0E-96 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_0962 e3ed0883ead3c542248c8204210335cc 656 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 44 650 5.6E-224 T 14-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ Amico_0650 864a4d2b358363312b6ee0336392ab83 97 SUPERFAMILY SSF50104 10 84 8.42E-11 T 14-10-2018 IPR008991 Translation protein SH3-like domain superfamily Amico_1772 a9e44644bda98238effebfd287230b4f 246 Pfam PF08461 Ribonuclease R winged-helix domain 10 73 1.8E-8 T 14-10-2018 IPR013668 Ribonuclease R winged-helix domain Amico_1772 a9e44644bda98238effebfd287230b4f 246 Pfam PF07729 FCD domain 103 224 3.5E-23 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1772 a9e44644bda98238effebfd287230b4f 246 SUPERFAMILY SSF48008 101 229 3.14E-24 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1772 a9e44644bda98238effebfd287230b4f 246 Gene3D G3DSA:1.20.120.530 84 239 6.8E-26 T 14-10-2018 IPR008920 Transcription regulator FadR/GntR, C-terminal Amico_1772 a9e44644bda98238effebfd287230b4f 246 SMART SM00895 103 225 8.8E-24 T 14-10-2018 IPR011711 GntR, C-terminal Amico_1569 9039e509483dee68815a22cb30623a51 286 Pfam PF02653 Branched-chain amino acid transport system / permease component 8 272 2.9E-31 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Amico_0364 67d2dd7e4c6a7af540737ccdedf11452 407 Gene3D G3DSA:3.90.1150.10 24 398 5.2E-135 T 14-10-2018 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 GO:0003824 Amico_0364 67d2dd7e4c6a7af540737ccdedf11452 407 Gene3D G3DSA:3.40.640.10 67 292 5.2E-135 T 14-10-2018 IPR015421 Pyridoxal phosphate-dependent transferase, major domain GO:0003824 Amico_0364 67d2dd7e4c6a7af540737ccdedf11452 407 SUPERFAMILY SSF53383 10 401 9.57E-102 T 14-10-2018 IPR015424 Pyridoxal phosphate-dependent transferase Amico_0364 67d2dd7e4c6a7af540737ccdedf11452 407 Pfam PF00155 Aminotransferase class I and II 60 393 8.6E-36 T 14-10-2018 IPR004839 Aminotransferase, class I/classII GO:0009058|GO:0030170 Amico_1387 b877f60e15226ddf79659ab25aae530f 183 Hamap MF_02089 Epoxyqueuosine reductase QueH [queH]. 4 179 31.935 T 14-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 Amico_1387 b877f60e15226ddf79659ab25aae530f 183 Pfam PF02677 Uncharacterized BCR, COG1636 4 177 7.6E-59 T 14-10-2018 IPR003828 Epoxyqueuosine reductase QueH MetaCyc: PWY-6700 Amico_0602 a531b82ab2ca7217ba5ee565e097b27a 264 Pfam PF04085 rod shape-determining protein MreC 115 258 2.7E-29 T 14-10-2018 IPR007221 Rod shape-determining protein MreC GO:0008360 Amico_0602 a531b82ab2ca7217ba5ee565e097b27a 264 Gene3D G3DSA:2.40.10.340 111 256 1.5E-27 T 14-10-2018 Amico_0602 a531b82ab2ca7217ba5ee565e097b27a 264 Gene3D G3DSA:2.40.10.350 170 246 1.5E-27 T 14-10-2018 Amico_1428 c5badd8e453f2f644862cee28da58962 189 ProSitePatterns PS00379 CDP-alcohol phosphatidyltransferases signature. 64 86 - T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Amico_1428 c5badd8e453f2f644862cee28da58962 189 Pfam PF01066 CDP-alcohol phosphatidyltransferase 5 86 1.8E-14 T 14-10-2018 IPR000462 CDP-alcohol phosphatidyltransferase GO:0008654|GO:0016020|GO:0016780 Amico_1428 c5badd8e453f2f644862cee28da58962 189 PIRSF PIRSF000847 1 189 6.9E-50 T 14-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Amico_1428 c5badd8e453f2f644862cee28da58962 189 Gene3D G3DSA:1.20.120.1760 5 184 2.0E-11 T 14-10-2018 Amico_1428 c5badd8e453f2f644862cee28da58962 189 TIGRFAM TIGR00560 pgsA: CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase 5 183 5.6E-47 T 14-10-2018 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase GO:0008444|GO:0008654|GO:0016021 KEGG: 00564+2.7.8.5|MetaCyc: PWY-5269|MetaCyc: PWY-5668|MetaCyc: PWY-7817 Amico_0181 4386fdaaf8ed0ffb165178d20dc16b0b 108 Pfam PF07883 Cupin domain 48 104 5.8E-12 T 14-10-2018 IPR013096 Cupin 2, conserved barrel Amico_0181 4386fdaaf8ed0ffb165178d20dc16b0b 108 SUPERFAMILY SSF51182 38 106 4.92E-17 T 14-10-2018 IPR011051 RmlC-like cupin domain superfamily Amico_0181 4386fdaaf8ed0ffb165178d20dc16b0b 108 Gene3D G3DSA:2.60.120.10 17 108 2.0E-34 T 14-10-2018 IPR014710 RmlC-like jelly roll fold Amico_1542 aa574bf9dbccfbcf40591b954b10b92e 180 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 26 157 1.2E-29 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1104 3240d625621a768656818a525d37f0cd 369 Pfam PF04865 Baseplate J-like protein 69 327 4.7E-62 T 14-10-2018 IPR006949 Baseplate protein J-like Amico_1104 3240d625621a768656818a525d37f0cd 369 PIRSF PIRSF020481 2 368 4.0E-52 T 14-10-2018 IPR014507 Baseplate assembly protein J, predicted Amico_0912 03a1230004377a8b037cffc1a221f8e5 157 Gene3D G3DSA:2.30.110.10 2 157 4.1E-40 T 14-10-2018 IPR012349 FMN-binding split barrel GO:0048037 Amico_0912 03a1230004377a8b037cffc1a221f8e5 157 SUPERFAMILY SSF50475 1 154 1.7E-47 T 14-10-2018 Amico_0912 03a1230004377a8b037cffc1a221f8e5 157 Pfam PF12900 Pyridoxamine 5'-phosphate oxidase 16 152 4.2E-19 T 14-10-2018 IPR024747 Pyridoxamine 5'-phosphate oxidase-related Amico_1282 cca32ac325e53f2c7b038187625885e1 174 Pfam PF02417 Chromate transporter 5 169 5.0E-35 T 14-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 Amico_1760 887eb1a26258cd70c1a542517f1f89dd 154 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 15 145 1.9E-26 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1176 760c2b6c3851346358fbc237075fabe5 201 Pfam PF02163 Peptidase family M50 122 158 2.2E-7 T 14-10-2018 IPR008915 Peptidase M50 GO:0004222|GO:0006508 Reactome: R-HSA-1655829|Reactome: R-HSA-381033|Reactome: R-HSA-8874211|Reactome: R-HSA-8963889 Amico_1275 af7da4aaab68d01354311851a1a3d5d0 161 Pfam PF01899 Na+/H+ ion antiporter subunit 5 158 4.7E-36 T 14-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Amico_1275 af7da4aaab68d01354311851a1a3d5d0 161 PIRSF PIRSF019239 1 159 1.3E-32 T 14-10-2018 IPR002758 Na+/H+ antiporter subunit E GO:0006812|GO:0008324|GO:0016021 Amico_1497 dd86bbb96ca629ffe3f1822f16b62c36 368 SUPERFAMILY SSF53756 97 253 1.88E-6 T 14-10-2018 Amico_0144 259b419e871051b809491387fa60d3ac 133 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 3 128 1.2E-17 T 14-10-2018 IPR009936 Protein of unknown function DUF1468 Amico_0874 03e9a2b69f83fcd79daff2f80c1d4699 274 Pfam PF01148 Cytidylyltransferase family 13 269 3.8E-55 T 14-10-2018 Amico_0874 03e9a2b69f83fcd79daff2f80c1d4699 274 ProSitePatterns PS01315 Phosphatidate cytidylyltransferase signature. 230 256 - T 14-10-2018 IPR000374 Phosphatidate cytidylyltransferase GO:0016020|GO:0016772 KEGG: 00564+2.7.7.41|KEGG: 04070+2.7.7.41|MetaCyc: PWY-5667|MetaCyc: PWY-5981|MetaCyc: PWY-7817 Amico_0240 d7cf361c3182a89d753f51d2e615c053 235 Pfam PF04474 Protein of unknown function (DUF554) 12 229 3.0E-74 T 14-10-2018 IPR007563 Protein of unknown function DUF554 Amico_0665 b5a8de24544206d9d54e896dbfdbf485 394 Gene3D G3DSA:1.20.5.340 66 188 2.6E-5 T 14-10-2018 Amico_0665 b5a8de24544206d9d54e896dbfdbf485 394 Pfam PF11283 Protein of unknown function (DUF3084) 11 85 1.3E-29 T 14-10-2018 IPR021435 Protein of unknown function DUF3084 Amico_0134 465a1e99fb440ba3118ea88a0ccbf8a0 296 TIGRFAM TIGR00722 ttdA_fumA_fumB: hydrolyase, tartrate alpha subunit/fumarate domain protein, Fe-S type 11 285 5.3E-69 T 14-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 Amico_0134 465a1e99fb440ba3118ea88a0ccbf8a0 296 Pfam PF05681 Fumarate hydratase (Fumerase) 9 284 9.3E-76 T 14-10-2018 IPR004646 Fe-S hydro-lyase, tartrate dehydratase alpha-type, catalytic domain GO:0016829 Amico_1849 3d4d1682c81c2916bfca424d2f19020e 163 SUPERFAMILY SSF54197 2 151 6.8E-38 T 14-10-2018 IPR036265 HIT-like superfamily Amico_1849 3d4d1682c81c2916bfca424d2f19020e 163 Pfam PF01230 HIT domain 35 126 1.2E-9 T 14-10-2018 IPR001310 Histidine triad (HIT) protein Amico_1849 3d4d1682c81c2916bfca424d2f19020e 163 Gene3D G3DSA:3.30.428.10 1 162 1.3E-51 T 14-10-2018 IPR036265 HIT-like superfamily Amico_0734 8390b5519e54e5a602d5be0273f8e980 201 Gene3D G3DSA:3.90.79.10 16 191 5.8E-38 T 14-10-2018 Amico_0734 8390b5519e54e5a602d5be0273f8e980 201 Pfam PF00293 NUDIX domain 32 150 2.9E-13 T 14-10-2018 IPR000086 NUDIX hydrolase domain GO:0016787 Amico_0734 8390b5519e54e5a602d5be0273f8e980 201 SUPERFAMILY SSF55811 27 188 6.23E-24 T 14-10-2018 IPR015797 NUDIX hydrolase-like domain superfamily GO:0016787 Amico_1320 b7652bf3fcb4bfe70126f00568f0a3a0 173 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 152 2.4E-31 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1910 22042a21904b70e3c0452168fcdeda52 185 Pfam PF13240 zinc-ribbon domain 12 31 1.9E-6 T 14-10-2018 IPR026870 Zinc-ribbon domain Reactome: R-HSA-202670 Amico_1910 22042a21904b70e3c0452168fcdeda52 185 Pfam PF14018 Domain of unknown function (DUF4234) 53 138 1.9E-14 T 14-10-2018 IPR025328 Domain of unknown function DUF4234 Amico_0320 8228d813ac7b04b58ba7fea05054a6f3 280 SUPERFAMILY SSF51556 1 275 1.26E-40 T 14-10-2018 IPR032466 Metal-dependent hydrolase Amico_0320 8228d813ac7b04b58ba7fea05054a6f3 280 Pfam PF04909 Amidohydrolase 3 274 1.0E-20 T 14-10-2018 IPR006680 Amidohydrolase-related GO:0016787 Amico_0320 8228d813ac7b04b58ba7fea05054a6f3 280 Gene3D G3DSA:3.20.20.140 1 277 2.5E-42 T 14-10-2018 Amico_1596 c82c5597b676e5b977e10b51a349ba09 192 Gene3D G3DSA:3.40.50.2020 9 192 3.3E-50 T 14-10-2018 Amico_1596 c82c5597b676e5b977e10b51a349ba09 192 Hamap MF_01208 Orotate phosphoribosyltransferase [pyrE]. 1 192 22.374 T 14-10-2018 IPR023031 Orotate phosphoribosyltransferase GO:0004588|GO:0006221 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791|Reactome: R-HSA-500753 Amico_1596 c82c5597b676e5b977e10b51a349ba09 192 Pfam PF00156 Phosphoribosyl transferase domain 56 152 6.1E-14 T 14-10-2018 IPR000836 Phosphoribosyltransferase domain GO:0009116 Amico_1596 c82c5597b676e5b977e10b51a349ba09 192 TIGRFAM TIGR01367 pyrE_Therm: orotate phosphoribosyltransferase 10 191 3.0E-57 T 14-10-2018 IPR006273 Orotate phosphoribosyltransferase, bacterial GO:0004588|GO:0019856 KEGG: 00240+2.4.2.10|KEGG: 00983+2.4.2.10|MetaCyc: PWY-5686|MetaCyc: PWY-7790|MetaCyc: PWY-7791 Amico_1596 c82c5597b676e5b977e10b51a349ba09 192 SUPERFAMILY SSF53271 12 152 4.2E-33 T 14-10-2018 IPR029057 Phosphoribosyltransferase-like Amico_0222 45c8dfbbb588c5284638aecea2b5e547 147 Pfam PF14102 Capsule biosynthesis CapC 11 121 2.8E-28 T 14-10-2018 IPR008338 Capsule biosynthesis protein CapC GO:0016020|GO:0045227 Amico_1741 01aff4270be9e5aca143b2acb2305aa8 68 Pfam PF11148 Protein of unknown function (DUF2922) 2 65 7.7E-22 T 14-10-2018 IPR021321 Protein of unknown function DUF2922 Amico_0200 1ec5eb33cfe551e998609bb02118f80d 174 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 24 156 1.4E-12 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_0145 5d20ce3f58b0a92fa4941566fae990c9 503 Pfam PF01970 Tripartite tricarboxylate transporter TctA family 20 442 2.5E-145 T 14-10-2018 IPR002823 Protein of unknown function DUF112, transmembrane Amico_0083 cff3ffe4f5cfd0d73666feb07ea81206 92 Pfam PF06196 Protein of unknown function (DUF997) 9 83 7.1E-32 T 14-10-2018 IPR010398 Protein of unknown function DUF997 Amico_0083 cff3ffe4f5cfd0d73666feb07ea81206 92 ProDom PD745092 MEMBRANE YHDT SODIUM/PANTOTHENATE TRANSMEMBRANE INNER SYMPORTER Y0210 INTEGRAL PROTEIN-LIKE PM1090 4 83 1.0E-23 T 14-10-2018 IPR010398 Protein of unknown function DUF997 Amico_1448 0cec925f42ad6ab943de9b245ac148fb 192 Pfam PF00578 AhpC/TSA family 8 131 3.6E-21 T 14-10-2018 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant GO:0016209|GO:0016491|GO:0055114 KEGG: 00480+1.11.1.15|Reactome: R-HSA-3299685 Amico_1448 0cec925f42ad6ab943de9b245ac148fb 192 SUPERFAMILY SSF52833 4 154 3.57E-30 T 14-10-2018 IPR036249 Thioredoxin-like superfamily Amico_1448 0cec925f42ad6ab943de9b245ac148fb 192 Gene3D G3DSA:3.40.30.10 3 152 6.3E-30 T 14-10-2018 Amico_0260 6251fe3ed4feeb8febaaad2a8b51d035 248 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 67 242 4.7E-21 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_0260 6251fe3ed4feeb8febaaad2a8b51d035 248 SUPERFAMILY SSF161098 50 231 3.14E-24 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0260 6251fe3ed4feeb8febaaad2a8b51d035 248 Gene3D G3DSA:1.10.3720.10 50 243 7.3E-18 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0713 677a701e29888d6695b2c192b37cf311 170 Pfam PF02674 Colicin V production protein 7 148 7.3E-26 T 14-10-2018 IPR003825 Colicin V production, CvpA GO:0009403|GO:0016020 Amico_1701 e0835238e68bdaf9e9a1e95f6816fd81 644 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 114 551 3.5E-81 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1701 e0835238e68bdaf9e9a1e95f6816fd81 644 TIGRFAM TIGR02123 TRAP_fused: TRAP transporter, 4TM/12TM fusion protein 14 623 5.3E-158 T 14-10-2018 IPR011853 TRAP C4-dicarboxylate transport system permease, fused DctM-DctQ Amico_1103 074c978e1aff7e088e79141f37ec4e29 218 TIGRFAM TIGR01634 tail_P2_I: phage tail protein I 52 155 6.0E-12 T 14-10-2018 IPR006521 Tail protein I Amico_1103 074c978e1aff7e088e79141f37ec4e29 218 Pfam PF09684 Phage tail protein (Tail_P2_I) 19 156 2.9E-22 T 14-10-2018 IPR006521 Tail protein I Amico_1416 0451dde8d857ab3e12e4dd0c32829652 577 Pfam PF04932 O-Antigen ligase 225 375 1.8E-16 T 14-10-2018 IPR007016 O-antigen ligase-related Amico_1498 e630c7fbbf7c6b8ff4503ea0db3f3994 365 Pfam PF02684 Lipid-A-disaccharide synthetase 3 339 2.5E-72 T 14-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 Amico_1498 e630c7fbbf7c6b8ff4503ea0db3f3994 365 SUPERFAMILY SSF53756 2 287 1.04E-14 T 14-10-2018 Amico_1498 e630c7fbbf7c6b8ff4503ea0db3f3994 365 TIGRFAM TIGR00215 lpxB: lipid-A-disaccharide synthase 3 360 9.7E-61 T 14-10-2018 IPR003835 Glycosyl transferase, family 19 GO:0008915|GO:0009245 KEGG: 00540+2.4.1.182 Amico_1117 2aff7ad733694a3c751a40808dd32458 184 Pfam PF06763 Prophage minor tail protein Z (GPZ) 10 176 2.7E-12 T 14-10-2018 IPR010633 Bacteriophage lambda, GpZ, minor tail Amico_0628 b449e25d8847f98439426b521b3afa2d 207 Hamap MF_01328_B 50S ribosomal protein L4 [rplD]. 9 206 35.028 T 14-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0628 b449e25d8847f98439426b521b3afa2d 207 Pfam PF00573 Ribosomal protein L4/L1 family 18 203 7.7E-74 T 14-10-2018 IPR002136 Ribosomal protein L4/L1e GO:0003735|GO:0005840|GO:0006412 Amico_0628 b449e25d8847f98439426b521b3afa2d 207 TIGRFAM TIGR03953 rplD_bact: 50S ribosomal protein uL4 18 203 2.4E-78 T 14-10-2018 IPR013005 50S ribosomal protein uL4 Reactome: R-HSA-5368286|Reactome: R-HSA-5389840|Reactome: R-HSA-5419276 Amico_0628 b449e25d8847f98439426b521b3afa2d 207 Gene3D G3DSA:3.40.1370.10 1 206 1.5E-82 T 14-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 Amico_0628 b449e25d8847f98439426b521b3afa2d 207 SUPERFAMILY SSF52166 1 205 1.27E-80 T 14-10-2018 IPR023574 Ribosomal protein L4 domain superfamily GO:0003735|GO:0005840|GO:0006412 Amico_0482 e688a2507a62b912b3031812ddf53b0e 167 SUPERFAMILY SSF141523 34 165 1.11E-26 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Amico_0482 e688a2507a62b912b3031812ddf53b0e 167 Gene3D G3DSA:2.40.440.10 17 167 1.5E-30 T 14-10-2018 IPR038063 L,D-transpeptidase catalytic domain-like Amico_0482 e688a2507a62b912b3031812ddf53b0e 167 Pfam PF03734 L,D-transpeptidase catalytic domain 36 165 1.1E-21 T 14-10-2018 IPR005490 L,D-transpeptidase catalytic domain GO:0016740 Amico_1348 fe6dd56026d9c26dea28418cc35d1377 401 Pfam PF02687 FtsX-like permease family 311 395 1.9E-6 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Amico_1348 fe6dd56026d9c26dea28418cc35d1377 401 Pfam PF12704 MacB-like periplasmic core domain 17 255 1.3E-12 T 14-10-2018 IPR025857 MacB-like periplasmic core domain Amico_0521 02149f3be406f3b7d70053015c4aef46 176 Pfam PF04143 Sulphur transport 38 169 4.9E-15 T 14-10-2018 IPR007272 Sulphur transport domain Amico_0345 7419ebf7507118fcf9b66a7ada985534 265 Pfam PF11209 Protein of unknown function (DUF2993) 59 233 1.3E-8 T 14-10-2018 IPR021373 Protein of unknown function DUF2993 Amico_0712 923a31ec52abe65f4098be719f70331d 85 Pfam PF05164 Cell division protein ZapA 8 71 1.5E-4 T 14-10-2018 IPR007838 Cell division protein ZapA-like Amico_0271 cc20004d732a5ff1e61365021f57ece1 163 Pfam PF05145 Transition state regulatory protein AbrB 6 158 5.9E-22 T 14-10-2018 IPR007820 AbrB family GO:0010468|GO:0016021 Amico_1016 b9ca9adff280b565c8b9308541f6bf26 186 SUPERFAMILY SSF53323 9 183 2.75E-42 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_1016 b9ca9adff280b565c8b9308541f6bf26 186 Gene3D G3DSA:3.40.920.10 4 185 3.8E-55 T 14-10-2018 IPR002869 Pyruvate-flavodoxin oxidoreductase, central domain GO:0016491|GO:0055114 Amico_1016 b9ca9adff280b565c8b9308541f6bf26 186 Pfam PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase 15 178 5.2E-37 T 14-10-2018 IPR019752 Pyruvate/ketoisovalerate oxidoreductase, catalytic domain GO:0016903|GO:0055114 Amico_0133 872093e8f296bba364ba8a02a478e53b 427 TIGRFAM TIGR00786 dctM: TRAP transporter, DctM subunit 17 422 4.9E-118 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0133 872093e8f296bba364ba8a02a478e53b 427 PIRSF PIRSF006066 1 427 4.5E-135 T 14-10-2018 IPR004681 TRAP transporter large membrane protein DctM GO:0016021 Amico_0133 872093e8f296bba364ba8a02a478e53b 427 Pfam PF06808 Tripartite ATP-independent periplasmic transporter, DctM component 7 416 6.5E-106 T 14-10-2018 IPR010656 TRAP C4-dicarboxylate transport system permease DctM subunit Amico_1875 f4b44a633a7e392e11b98f71b81b2020 227 Pfam PF11010 Protein of unknown function (DUF2848) 27 218 1.6E-61 T 14-10-2018 IPR021269 Protein of unknown function DUF2848 Amico_1875 f4b44a633a7e392e11b98f71b81b2020 227 SUPERFAMILY SSF56529 38 162 5.19E-5 T 14-10-2018 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily GO:0003824 Amico_0325 3fca03d0a3a8b72f79646e36fb34b13d 424 Pfam PF07613 Protein of unknown function (DUF1576) 256 415 6.1E-53 T 14-10-2018 IPR011470 Protein of unknown function DUF1576 Amico_0325 3fca03d0a3a8b72f79646e36fb34b13d 424 Pfam PF07613 Protein of unknown function (DUF1576) 39 215 1.4E-59 T 14-10-2018 IPR011470 Protein of unknown function DUF1576 Amico_1500 a8ca7d03d81c51e557a03f3bb87e6111 365 Pfam PF03739 Predicted permease YjgP/YjgQ family 9 361 1.5E-88 T 14-10-2018 IPR005495 Permease LptG/LptF-related GO:0016021 Amico_1325 e00ba392864cf3ee0edf26eab2288c4f 362 Gene3D G3DSA:3.30.1370.60 71 331 4.6E-115 T 14-10-2018 Amico_1325 e00ba392864cf3ee0edf26eab2288c4f 362 SUPERFAMILY SSF89733 6 358 1.57E-90 T 14-10-2018 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily GO:0016491|GO:0055114 Amico_1325 e00ba392864cf3ee0edf26eab2288c4f 362 Pfam PF02615 Malate/L-lactate dehydrogenase 7 346 1.3E-106 T 14-10-2018 IPR003767 Malate/L-lactate dehydrogenase-like GO:0016491|GO:0055114 Amico_1325 e00ba392864cf3ee0edf26eab2288c4f 362 Gene3D G3DSA:1.10.1530.10 14 352 4.6E-115 T 14-10-2018 Amico_1266 510a6d567b01189cd58416e64ea0c1cc 153 Gene3D G3DSA:3.40.50.12280 8 151 7.1E-55 T 14-10-2018 Amico_1266 510a6d567b01189cd58416e64ea0c1cc 153 SUPERFAMILY SSF56770 12 142 7.46E-52 T 14-10-2018 Amico_1266 510a6d567b01189cd58416e64ea0c1cc 153 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 24 134 3.5E-26 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_0673 01aff65dba370b51dfb6dc0272c1f152 143 SUPERFAMILY SSF55874 39 138 4.02E-11 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_0673 01aff65dba370b51dfb6dc0272c1f152 143 Gene3D G3DSA:3.30.565.10 13 139 1.7E-11 T 14-10-2018 IPR036890 Histidine kinase/HSP90-like ATPase superfamily Amico_1907 6083b8f6d743eedfad4ce0d72cf2d382 255 Pfam PF12837 4Fe-4S binding domain 9 32 9.4E-7 T 14-10-2018 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain Amico_1907 6083b8f6d743eedfad4ce0d72cf2d382 255 Gene3D G3DSA:3.30.70.20 8 67 1.7E-11 T 14-10-2018 Amico_1907 6083b8f6d743eedfad4ce0d72cf2d382 255 SUPERFAMILY SSF54862 6 68 1.95E-17 T 14-10-2018 Amico_0048 cda103590099f40c93c4e09349f0e1da 224 TIGRFAM TIGR01726 HEQRo_perm_3TM: amino ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family 11 109 1.1E-22 T 14-10-2018 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain GO:0016021|GO:0022857|GO:0043190|GO:0071705 Amico_0048 cda103590099f40c93c4e09349f0e1da 224 SUPERFAMILY SSF161098 12 200 8.76E-37 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0048 cda103590099f40c93c4e09349f0e1da 224 Gene3D G3DSA:1.10.3720.10 3 216 9.5E-45 T 14-10-2018 IPR035906 MetI-like superfamily Amico_0048 cda103590099f40c93c4e09349f0e1da 224 Pfam PF00528 Binding-protein-dependent transport system inner membrane component 32 215 6.2E-13 T 14-10-2018 IPR000515 ABC transporter type 1, transmembrane domain MetI-like GO:0016020|GO:0055085 Amico_1106 005367881755cc68985a6d243c879816 129 Pfam PF06995 Phage P2 GpU 6 128 9.0E-27 T 14-10-2018 IPR009734 Myoviridae, GpU Amico_1810 63ad1f88b581a6aeff06065f4d9398e2 413 PRINTS PR00758 Arsenical pump membrane protein signature 316 338 2.9E-8 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Amico_1810 63ad1f88b581a6aeff06065f4d9398e2 413 PRINTS PR00758 Arsenical pump membrane protein signature 109 133 2.9E-8 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Amico_1810 63ad1f88b581a6aeff06065f4d9398e2 413 PRINTS PR00758 Arsenical pump membrane protein signature 273 297 2.9E-8 T 14-10-2018 IPR000802 Arsenical pump membrane protein, ArsB GO:0015105|GO:0015700|GO:0016021 Amico_1810 63ad1f88b581a6aeff06065f4d9398e2 413 Pfam PF03600 Citrate transporter 27 340 1.8E-29 T 14-10-2018 IPR004680 Citrate transporter-like domain GO:0016021|GO:0055085 Reactome: R-HSA-5662702 Amico_1485 909eb5c12f2555f576d75a5bbc413d8c 404 Pfam PF04932 O-Antigen ligase 177 331 6.7E-19 T 14-10-2018 IPR007016 O-antigen ligase-related Amico_0595 f13c5b3fd733fb464332b6d349745ea5 142 Pfam PF06305 Lipopolysaccharide assembly protein A domain 21 86 7.6E-17 T 14-10-2018 IPR010445 Lipopolysaccharide assembly protein A domain GO:0005887 Amico_1298 443d6e6bbd5233ead686aeb0dd657c40 170 Pfam PF07331 Tripartite tricarboxylate transporter TctB family 9 160 7.7E-10 T 14-10-2018 IPR009936 Protein of unknown function DUF1468 Amico_1392 94a5d85c00bb94d13f5d8063bfd9c41d 509 Gene3D G3DSA:3.40.47.10 178 308 1.4E-9 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_1392 94a5d85c00bb94d13f5d8063bfd9c41d 509 SUPERFAMILY SSF53901 187 294 1.22E-11 T 14-10-2018 IPR016039 Thiolase-like GO:0003824 Amico_1392 94a5d85c00bb94d13f5d8063bfd9c41d 509 Pfam PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 256 327 3.8E-5 T 14-10-2018 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO:0004315|GO:0006633 KEGG: 00061+2.3.1.180|MetaCyc: PWY-4381 Amico_0149 c8575cac676bc71ee331a2c86a3daf58 364 Pfam PF04143 Sulphur transport 221 331 6.1E-10 T 14-10-2018 IPR007272 Sulphur transport domain Amico_0149 c8575cac676bc71ee331a2c86a3daf58 364 TIGRFAM TIGR04112 seleno_YedE: putative selenium metabolism protein, YedE family 16 356 2.7E-153 T 14-10-2018 IPR026366 Putative selenium metabolism protein, YedE family Amico_0503 a4714ada19e368b15058be9d8d22c752 293 Gene3D G3DSA:3.20.20.370 26 286 3.9E-8 T 14-10-2018 Amico_1664 a1ed4dc6bc7ceddb826580d4c9de3a70 425 Gene3D G3DSA:3.90.226.30 15 416 6.4E-113 T 14-10-2018 Amico_1664 a1ed4dc6bc7ceddb826580d4c9de3a70 425 Pfam PF09861 Domain of unknown function (DUF2088) 15 202 7.1E-57 T 14-10-2018 IPR018657 LarA-like, N-terminal GO:0050043 KEGG: 00620+5.1.2.1 Amico_1664 a1ed4dc6bc7ceddb826580d4c9de3a70 425 Gene3D G3DSA:3.40.50.11440 36 268 6.4E-113 T 14-10-2018 Amico_1675 cb62fe518c0b666917f0e2ddb03da88c 161 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 27 155 8.0E-21 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_0953 0ea5f18948154516d954c2aff23908f5 73 Pfam PF13443 Cro/C1-type HTH DNA-binding domain 5 62 3.3E-7 T 14-10-2018 IPR001387 Cro/C1-type helix-turn-helix domain GO:0043565 Amico_0953 0ea5f18948154516d954c2aff23908f5 73 SUPERFAMILY SSF47413 6 63 1.31E-7 T 14-10-2018 IPR010982 Lambda repressor-like, DNA-binding domain superfamily GO:0003677 Amico_0953 0ea5f18948154516d954c2aff23908f5 73 Gene3D G3DSA:1.10.260.40 3 65 3.9E-7 T 14-10-2018 Amico_0585 9fcd85500a836e5a216d3abfe2cd3b2d 215 Gene3D G3DSA:3.40.50.300 1 166 5.8E-19 T 14-10-2018 Amico_0585 9fcd85500a836e5a216d3abfe2cd3b2d 215 Pfam PF03205 Molybdopterin guanine dinucleotide synthesis protein B 4 108 1.5E-9 T 14-10-2018 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain GO:0005525|GO:0006777 Amico_0585 9fcd85500a836e5a216d3abfe2cd3b2d 215 SUPERFAMILY SSF52540 3 107 1.33E-9 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0696 a7ee1a066b4d910e7367896df2c380fc 234 Pfam PF01790 Prolipoprotein diacylglyceryl transferase 6 221 1.4E-30 T 14-10-2018 IPR001640 Prolipoprotein diacylglyceryl transferase GO:0016020|GO:0016757|GO:0042158 Amico_1204 abac529418ec7cf77b26a2a9d18a62f3 134 Pfam PF07811 TadE-like protein 13 55 4.0E-18 T 14-10-2018 IPR012495 TadE-like Amico_1732 a83a83d5bf6916c888832ddd91e9858a 190 SUPERFAMILY SSF51161 19 177 4.34E-30 T 14-10-2018 IPR011004 Trimeric LpxA-like superfamily Amico_1732 a83a83d5bf6916c888832ddd91e9858a 190 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 120 151 0.0011 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_1732 a83a83d5bf6916c888832ddd91e9858a 190 Pfam PF00132 Bacterial transferase hexapeptide (six repeats) 37 69 6.1E-6 T 14-10-2018 IPR001451 Hexapeptide repeat Amico_1732 a83a83d5bf6916c888832ddd91e9858a 190 Gene3D G3DSA:2.160.10.10 2 171 4.6E-43 T 14-10-2018 Amico_0264 628232eb47f6ab2e25269ab9b37a4131 226 Pfam PF01478 Type IV leader peptidase family 75 177 1.2E-7 T 14-10-2018 IPR000045 Prepilin type IV endopeptidase, peptidase domain GO:0004190|GO:0016020 Amico_0128 8f57f6c12baac6d011b6da946dd08b74 215 Pfam PF09559 Cas6 Crispr 2 213 3.1E-72 T 14-10-2018 IPR014174 CRISPR-associated protein, Cas6-related Amico_0128 8f57f6c12baac6d011b6da946dd08b74 215 TIGRFAM TIGR02807 cas6_cmx6: CRISPR-associated protein Cas6, subtype MYXAN 1 211 2.1E-57 T 14-10-2018 IPR014174 CRISPR-associated protein, Cas6-related Amico_0360 815fc748c5f40f5a02477509a7a27ae8 368 Pfam PF02653 Branched-chain amino acid transport system / permease component 55 342 1.6E-18 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Amico_1735 29ecb3ea7bd1fd53e4dafb68ded0fc93 361 Pfam PF07429 4-alpha-L-fucosyltransferase glycosyl transferase group 56 43 289 5.2E-21 T 14-10-2018 IPR009993 TDP-N-acetylfucosamine:lipid II N-acetylfucosaminyltransferase GO:0008417|GO:0009246|GO:0036065 Amico_1328 f3f567552a982fcf62e5a0e3c28cefa7 390 Pfam PF02687 FtsX-like permease family 277 381 4.6E-13 T 14-10-2018 IPR003838 ABC transporter permease protein domain GO:0016020 Amico_0337 fbf34048d38011289ed267505fb18794 250 SUPERFAMILY SSF74653 176 246 2.09E-9 T 14-10-2018 Amico_0337 fbf34048d38011289ed267505fb18794 250 Pfam PF03544 Gram-negative bacterial TonB protein C-terminal 178 246 3.9E-6 T 14-10-2018 IPR037682 TonB, C-terminal GO:0055085 Amico_0337 fbf34048d38011289ed267505fb18794 250 TIGRFAM TIGR01352 tonB_Cterm: TonB family C-terminal domain 181 249 1.6E-8 T 14-10-2018 IPR006260 TonB/TolA, C-terminal Amico_1697 5b4a86a79f3e17a4a8dfe1130ac6323b 384 Pfam PF07907 YibE/F-like protein 120 358 6.9E-74 T 14-10-2018 IPR012507 YibE/F-like Amico_1283 1b76faf4a13fb7e26bc9a8066f98643f 176 Pfam PF02417 Chromate transporter 4 167 1.8E-33 T 14-10-2018 IPR003370 Chromate transporter GO:0015109|GO:0015703 Amico_0323 c20af8e1e89d31491653d64519a59be7 862 Pfam PF09924 Uncharacterised conserved protein (DUF2156) 546 829 7.1E-94 T 14-10-2018 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal Amico_0323 c20af8e1e89d31491653d64519a59be7 862 SUPERFAMILY SSF55729 648 827 3.87E-17 T 14-10-2018 IPR016181 Acyl-CoA N-acyltransferase Amico_0323 c20af8e1e89d31491653d64519a59be7 862 Pfam PF03706 Lysylphosphatidylglycerol synthase TM region 22 301 1.3E-12 T 14-10-2018 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD Amico_0452 0f9d261cc01c50960a25e89fddbff302 62 Gene3D G3DSA:2.30.31.70 1 59 1.6E-25 T 14-10-2018 Amico_0274 7d8bb590e35f23c51977e3b76be5ccdf 295 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 18 287 8.9E-45 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Amico_0980 6d774379d406e3588a01ac07f1e44000 391 SMART SM00670 190 299 2.1E-6 T 14-10-2018 IPR002716 PIN domain Amico_0980 6d774379d406e3588a01ac07f1e44000 391 SUPERFAMILY SSF88723 191 320 3.92E-19 T 14-10-2018 IPR029060 PIN-like domain superfamily Amico_0980 6d774379d406e3588a01ac07f1e44000 391 Gene3D G3DSA:3.40.50.1010 190 323 1.2E-44 T 14-10-2018 Amico_0564 3eb4d7c6d03459b234f9faf2fb101b60 273 Pfam PF01972 Serine dehydrogenase proteinase 6 269 1.1E-123 T 14-10-2018 IPR002825 Peptidase S49, serine-peptidase prokaryotes GO:0016021 Amico_0564 3eb4d7c6d03459b234f9faf2fb101b60 273 SUPERFAMILY SSF52096 59 234 9.09E-26 T 14-10-2018 IPR029045 ClpP/crotonase-like domain superfamily Amico_0564 3eb4d7c6d03459b234f9faf2fb101b60 273 Gene3D G3DSA:3.90.226.10 63 248 1.2E-22 T 14-10-2018 Amico_0242 2687ae64e964eab60d26579a57a10423 356 Pfam PF02653 Branched-chain amino acid transport system / permease component 61 338 7.1E-42 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Amico_0179 173074ca15f50308e8953c73abebe799 389 SUPERFAMILY SSF53187 71 335 5.95E-10 T 14-10-2018 Amico_0957 81bcb3ba7b0fb1184e80fdd1572d6076 398 Pfam PF05684 Protein of unknown function (DUF819) 10 393 7.9E-99 T 14-10-2018 IPR008537 Protein of unknown function DUF819 Amico_1295 76d3c01e8f175e26cbd227d5032fdf1e 122 Pfam PF03788 LrgA family 15 106 6.6E-26 T 14-10-2018 IPR005538 LrgA/CidA family GO:0016021 Amico_1226 212cbcdcc19d668d17e951b583541f2c 501 Pfam PF02652 L-lactate permease 1 307 6.6E-54 T 14-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 Amico_1226 212cbcdcc19d668d17e951b583541f2c 501 Pfam PF02652 L-lactate permease 323 491 7.1E-34 T 14-10-2018 IPR003804 L-lactate permease GO:0005887|GO:0015129|GO:0015727 Amico_0707 37605387ceb7cd4b93a6627c23415ab4 439 Pfam PF02386 Cation transport protein 15 417 6.7E-49 T 14-10-2018 IPR003445 Cation transporter GO:0006812|GO:0008324|GO:0055085 Amico_1458 4b2227062c47c44435f1f539bcc95e6e 294 PIRSF PIRSF003097 1 289 4.9E-67 T 14-10-2018 IPR004513 Cell division protein FtsX GO:0016021 Amico_0319 407cebcb268d2efbaf6f40f9d0df07a1 229 Hamap MF_00801 Endonuclease V [nfi]. 8 222 30.552 T 14-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 Amico_0319 407cebcb268d2efbaf6f40f9d0df07a1 229 Pfam PF04493 Endonuclease V 18 212 1.4E-67 T 14-10-2018 IPR007581 Endonuclease V GO:0004519|GO:0006281 Amico_0319 407cebcb268d2efbaf6f40f9d0df07a1 229 Gene3D G3DSA:3.30.2170.10 2 226 1.9E-72 T 14-10-2018 Amico_1814 2d6461032fd1f35f10e0cc2c41a69e48 336 Pfam PF13303 Phosphotransferase system, EIIC 12 335 6.2E-110 T 14-10-2018 IPR003352 Phosphotransferase system, EIIC GO:0008982|GO:0009401|GO:0016020 Amico_0471 ddf94b9d8dfb406a5333691317566a9a 317 Gene3D G3DSA:3.20.20.70 83 311 1.5E-7 T 14-10-2018 IPR013785 Aldolase-type TIM barrel GO:0003824 Amico_0471 ddf94b9d8dfb406a5333691317566a9a 317 PIRSF PIRSF004869 12 312 2.7E-73 T 14-10-2018 IPR016431 Pyruvate-formate lyase-activating enzyme, predicted Amico_0929 cb37b83f4a5ebded89e17e66b414dc1d 70 Pfam PF13619 KTSC domain 7 64 7.9E-23 T 14-10-2018 IPR025309 KTSC domain Amico_0126 715e67b66ba52ab533caa162a7d0871c 600 TIGRFAM TIGR04413 MYXAN_cmx8: CRISPR type MYXAN-associated protein Cmx8 17 583 5.6E-187 T 14-10-2018 IPR030928 CRISPR type MYXAN-associated protein Cmx8 Amico_1099 ce4fa3d60c75cdbabba33ba9e614cf57 108 Pfam PF16083 LydA holin phage, holin superfamily III 16 88 2.1E-18 T 14-10-2018 IPR032126 LydA-like holin Amico_1554 e8bff48a7c117d81ddfa0179d0d9f155 179 Gene3D G3DSA:3.40.50.700 2 178 4.0E-38 T 14-10-2018 IPR037024 [NiFe]-hydrogenase, small subunit, N-terminal domain superfamily Amico_1554 e8bff48a7c117d81ddfa0179d0d9f155 179 SUPERFAMILY SSF56770 3 171 5.36E-37 T 14-10-2018 Amico_1554 e8bff48a7c117d81ddfa0179d0d9f155 179 Pfam PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit 14 162 3.3E-29 T 14-10-2018 IPR006137 NADH:ubiquinone oxidoreductase-like, 20kDa subunit GO:0051536|GO:0055114 Reactome: R-HSA-611105|Reactome: R-HSA-6799198 Amico_1857 1a6f0d57ebe4f621f71affb829751bdf 243 Pfam PF16481 Domain of unknown function (DUF5058) 10 236 1.1E-77 T 14-10-2018 IPR032479 Protein of unknown function DUF5058 Amico_1744 ed1ce86b5ba70b079837af7126df34e8 271 Pfam PF11299 Protein of unknown function (DUF3100) 19 252 1.3E-99 T 14-10-2018 IPR021450 Protein of unknown function DUF3100 Amico_1750 02880b969dc44161acbfc315da2d640a 159 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 23 152 2.5E-36 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1150 a2e8469dedf2edc005d10191624aab29 143 Pfam PF13274 Protein of unknown function (DUF4065) 23 115 9.7E-22 T 14-10-2018 IPR025272 Domain of unknown function DUF4065 Amico_0157 9a9d27d93c7801a9f15deadfe777208d 288 Pfam PF02653 Branched-chain amino acid transport system / permease component 6 258 2.6E-41 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Amico_1058 ce09ab74d68bbed8ed5952dc1badc8e0 284 SUPERFAMILY SSF53807 122 233 7.36E-5 T 14-10-2018 Amico_0877 11bf14fdcee82e2d2f517cf7e5448ec3 270 SUPERFAMILY SSF52540 3 111 4.06E-6 T 14-10-2018 IPR027417 P-loop containing nucleoside triphosphate hydrolase Amico_0965 10d7aa8e8525baab59cabfec8e0fe466 99 SUPERFAMILY SSF51306 36 87 9.59E-5 T 14-10-2018 IPR036286 LexA/Signal peptidase-like superfamily Amico_1143 6d9b6e1c3cd3f910c9dcad26228edea8 472 Pfam PF14470 Bacterial PH domain 37 121 5.0E-5 T 14-10-2018 IPR039519 YokE-like, PH domain Amico_1049 128d27cb9f533d17c2d86122422f66b5 174 Pfam PF14385 Domain of unknown function (DUF4416) 4 166 2.6E-55 T 14-10-2018 IPR025529 Protein of unknown function DUF4416 Amico_0413 e36141d2a9ca2d9c0c96893aeb07b49f 313 Pfam PF03279 Bacterial lipid A biosynthesis acyltransferase 64 309 6.0E-34 T 14-10-2018 IPR004960 Bacterial lipid A biosynthesis acyltransferase GO:0016021|GO:0016740 Amico_1333 19f3516edefc4c02ebf97a4b561740e2 118 Pfam PF04343 Protein of unknown function, DUF488 4 112 1.4E-29 T 14-10-2018 IPR007438 Protein of unknown function DUF488 Amico_1513 a3c8faf6f03a1f24407d08187877d6cc 210 Pfam PF04417 Protein of unknown function (DUF501) 46 182 1.5E-35 T 14-10-2018 IPR007511 Protein of unknown function DUF501 Amico_1634 7b4c5de15f6cd987a9ad8725080e94a8 547 Pfam PF03577 Peptidase family C69 25 453 8.6E-71 T 14-10-2018 IPR005322 Peptidase C69, dipeptidase A GO:0006508|GO:0016805 Amico_0139 8e0a4cfea5517ab0116db96c5eafd335 190 Pfam PF08901 Protein of unknown function (DUF1847) 19 161 1.8E-55 T 14-10-2018 IPR014997 Protein of unknown function DUF1847 Amico_1568 64512a3d3e83065e0f34ec03cafbef49 351 Pfam PF02653 Branched-chain amino acid transport system / permease component 59 334 7.3E-30 T 14-10-2018 IPR001851 ABC transporter, permease GO:0016020|GO:0022857|GO:0055085 Amico_1831 881f32b35e43039e4302cf77fc2ca26e 163 Pfam PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component 24 148 1.6E-24 T 14-10-2018 IPR007387 TRAP transporter, small membrane protein DctQ Amico_1134 3074806364abc2f40c69ce17b2226b3e 119 Pfam PF14359 Domain of unknown function (DUF4406) 61 106 2.0E-7 T 14-10-2018 IPR025518 Protein of unknown function DUF4406 Amico_1134 3074806364abc2f40c69ce17b2226b3e 119 SUPERFAMILY SSF52309 1 107 1.25E-7 T 14-10-2018 Amico_1134 3074806364abc2f40c69ce17b2226b3e 119 Gene3D G3DSA:3.40.50.450 2 118 1.2E-10 T 14-10-2018 Amico_0067 9f4efadaac905a2948aa17c7bbd96ea9 263 Pfam PF10670 Domain of unknown function (DUF4198) 26 231 1.5E-52 T 14-10-2018 IPR019613 Protein of unknown function DUF4198 Amico_1118 ef17ec71cee82b385f08b00fff14aec3 108 Pfam PF13856 ATP-binding sugar transporter from pro-phage 4 103 1.3E-5 T 14-10-2018 IPR025601 ATP-binding sugar transporter-like protein