locus-tag class description AMJAP_0001 PF00308 Bacterial dnaA protein AMJAP_0001 PF11638 DnaA N-terminal domain AMJAP_0001 PF08299 Bacterial dnaA protein helix-turn-helix AMJAP_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain AMJAP_0002 PF02767 DNA polymerase III beta subunit, central domain AMJAP_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain AMJAP_0003 PF02463 RecF/RecN/SMC N terminal domain AMJAP_0004 PF00204 DNA gyrase B AMJAP_0004 PF18053 DNA gyrase B subunit insert domain AMJAP_0004 PF00986 DNA gyrase B subunit, carboxyl terminus AMJAP_0004 PF01751 Toprim domain AMJAP_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_0009 PF00665 Integrase core domain AMJAP_0021 PF02092 Glycyl-tRNA synthetase beta subunit AMJAP_0021 PF05746 DALR anticodon binding domain AMJAP_0022 PF02091 Glycyl-tRNA synthetase alpha subunit AMJAP_0025 PF02386 Cation transport protein AMJAP_0026 PF02254 TrkA-N domain AMJAP_0026 PF02080 TrkA-C domain AMJAP_0027 PF01189 16S rRNA methyltransferase RsmB/F AMJAP_0027 PF01029 NusB family AMJAP_0028 PF02911 Formyl transferase, C-terminal domain AMJAP_0028 PF00551 Formyl transferase AMJAP_0029 PF01327 Polypeptide deformylase AMJAP_0031 PF02481 DNA recombination-mediator protein A AMJAP_0031 PF17782 DprA winged helix domain AMJAP_0032 PF00731 AIR carboxylase AMJAP_0033 PF01300 Telomere recombination AMJAP_0034 PF01218 Coproporphyrinogen III oxidase AMJAP_0035 PF01488 Shikimate / quinate 5-dehydrogenase AMJAP_0035 PF08501 Shikimate dehydrogenase substrate binding domain AMJAP_0035 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMJAP_0036 PF05362 Lon protease (S16) C-terminal proteolytic domain AMJAP_0036 PF13654 AAA domain AMJAP_0045 PF00132 Bacterial transferase hexapeptide (six repeats) AMJAP_0046 PF01432 Peptidase family M3 AMJAP_0047 PF09526 Probable metal-binding protein (DUF2387) AMJAP_0048 PF13302 Acetyltransferase (GNAT) domain AMJAP_0048 PF13673 Acetyltransferase (GNAT) domain AMJAP_0048 PF00958 GMP synthase C terminal domain AMJAP_0048 PF00117 Glutamine amidotransferase class-I AMJAP_0048 PF03352 Methyladenine glycosylase AMJAP_0049 PF07995 Glucose / Sorbosone dehydrogenase AMJAP_0050 PF00892 EamA-like transporter family AMJAP_0051 PF00950 ABC 3 transport family AMJAP_0052 PF00005 ABC transporter AMJAP_0053 PF01475 Ferric uptake regulator family AMJAP_0054 PF01297 Zinc-uptake complex component A periplasmic AMJAP_0057 PF03466 LysR substrate binding domain AMJAP_0057 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_0064 PF08534 Redoxin AMJAP_0064 PF00462 Glutaredoxin AMJAP_0065 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AMJAP_0067 PF00403 Heavy-metal-associated domain AMJAP_0068 PF13411 MerR HTH family regulatory protein AMJAP_0070 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMJAP_0070 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMJAP_0071 PF00860 Permease family AMJAP_0073 PF03144 Elongation factor Tu domain 2 AMJAP_0073 PF03764 Elongation factor G, domain IV AMJAP_0073 PF00009 Elongation factor Tu GTP binding domain AMJAP_0073 PF14492 Elongation Factor G, domain II AMJAP_0073 PF00679 Elongation factor G C-terminus AMJAP_0074 PF13188 PAS domain AMJAP_0074 PF02954 Bacterial regulatory protein, Fis family AMJAP_0074 PF00158 Sigma-54 interaction domain AMJAP_0076 PF00970 Oxidoreductase FAD-binding domain AMJAP_0076 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJAP_0076 PF00175 Oxidoreductase NAD-binding domain AMJAP_0077 PF00005 ABC transporter AMJAP_0077 PF02687 FtsX-like permease family AMJAP_0077 PF12704 MacB-like periplasmic core domain AMJAP_0084 PF01268 Formate--tetrahydrofolate ligase AMJAP_0086 PF12833 Helix-turn-helix domain AMJAP_0086 PF02311 AraC-like ligand binding domain AMJAP_0089 PF12833 Helix-turn-helix domain AMJAP_0089 PF12852 Cupin AMJAP_0090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_0090 PF03466 LysR substrate binding domain AMJAP_0092 PF00106 short chain dehydrogenase AMJAP_0094 PF00582 Universal stress protein family AMJAP_0095 PF05088 Bacterial NAD-glutamate dehydrogenase AMJAP_0096 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_0099 PF00158 Sigma-54 interaction domain AMJAP_0099 PF00072 Response regulator receiver domain AMJAP_0099 PF02954 Bacterial regulatory protein, Fis family AMJAP_0100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_0100 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_0102 PF02080 TrkA-C domain AMJAP_0102 PF03600 Citrate transporter AMJAP_0104 PF02754 Cysteine-rich domain AMJAP_0104 PF13183 4Fe-4S dicluster domain AMJAP_0105 PF01565 FAD binding domain AMJAP_0106 PF01565 FAD binding domain AMJAP_0106 PF02913 FAD linked oxidases, C-terminal domain AMJAP_0108 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_0108 PF03466 LysR substrate binding domain AMJAP_0112 PF04362 Bacterial Fe(2+) trafficking AMJAP_0113 PF00633 Helix-hairpin-helix motif AMJAP_0113 PF00730 HhH-GPD superfamily base excision DNA repair protein AMJAP_0113 PF14815 NUDIX domain AMJAP_0113 PF10576 Iron-sulfur binding domain of endonuclease III AMJAP_0115 PF00475 Imidazoleglycerol-phosphate dehydratase AMJAP_0116 PF00117 Glutamine amidotransferase class-I AMJAP_0117 PF00977 Histidine biosynthesis protein AMJAP_0118 PF00155 Aminotransferase class I and II AMJAP_0120 PF01037 Lrp/AsnC ligand binding domain AMJAP_0121 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_0122 PF03707 Bacterial signalling protein N terminal repeat AMJAP_0122 PF00563 EAL domain AMJAP_0122 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_0124 PF00490 Delta-aminolevulinic acid dehydratase AMJAP_0125 PF13089 Polyphosphate kinase N-terminal domain AMJAP_0125 PF17941 Polyphosphate kinase C-terminal domain 1 AMJAP_0125 PF13090 Polyphosphate kinase C-terminal domain 2 AMJAP_0125 PF02503 Polyphosphate kinase middle domain AMJAP_0126 PF00005 ABC transporter AMJAP_0127 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJAP_0128 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_0129 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_0130 PF13460 NAD(P)H-binding AMJAP_0130 PF11066 Protein of unknown function (DUF2867) AMJAP_0131 PF03466 LysR substrate binding domain AMJAP_0131 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_0132 PF17191 RecG wedge domain AMJAP_0132 PF00270 DEAD/DEAH box helicase AMJAP_0132 PF00271 Helicase conserved C-terminal domain AMJAP_0135 PF00037 4Fe-4S binding domain AMJAP_0136 PF01467 Cytidylyltransferase-like AMJAP_0137 PF01435 Peptidase family M48 AMJAP_0138 PF00171 Aldehyde dehydrogenase family AMJAP_0141 PF02881 SRP54-type protein, helical bundle domain AMJAP_0141 PF00448 SRP54-type protein, GTPase domain AMJAP_0142 PF00005 ABC transporter AMJAP_0143 PF18075 FtsX extracellular domain AMJAP_0144 PF04542 Sigma-70 region 2 AMJAP_0144 PF00140 Sigma-70 factor, region 1.2 AMJAP_0144 PF04545 Sigma-70, region 4 AMJAP_0145 PF04241 Protein of unknown function (DUF423) AMJAP_0146 PF02597 ThiS family AMJAP_0146 PF05690 Thiazole biosynthesis protein ThiG AMJAP_0147 PF05690 Thiazole biosynthesis protein ThiG AMJAP_0148 PF02390 Putative methyltransferase AMJAP_0151 PF01329 Pterin 4 alpha carbinolamine dehydratase AMJAP_0154 PF00486 Transcriptional regulatory protein, C terminal AMJAP_0154 PF00072 Response regulator receiver domain AMJAP_0155 PF16750 Sensor domain of 2-component histidine kinase AMJAP_0155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_0155 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_0155 PF00672 HAMP domain AMJAP_0156 PF00563 EAL domain AMJAP_0156 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_0156 PF08448 PAS fold AMJAP_0157 PF04996 Succinylarginine dihydrolase AMJAP_0158 PF00171 Aldehyde dehydrogenase family AMJAP_0159 PF04958 Arginine N-succinyltransferase beta subunit AMJAP_0162 PF00202 Aminotransferase class-III AMJAP_0163 PF00543 Nitrogen regulatory protein P-II AMJAP_0164 PF00909 Ammonium Transporter Family AMJAP_0165 PF00543 Nitrogen regulatory protein P-II AMJAP_0166 PF04380 Membrane fusogenic activity AMJAP_0167 PF00989 PAS fold AMJAP_0168 PF01078 Magnesium chelatase, subunit ChlI AMJAP_0168 PF13335 Magnesium chelatase, subunit ChlI C-terminal AMJAP_0169 PF03707 Bacterial signalling protein N terminal repeat AMJAP_0169 PF00563 EAL domain AMJAP_0169 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_0170 PF00580 UvrD/REP helicase N-terminal domain AMJAP_0170 PF13361 UvrD-like helicase C-terminal domain AMJAP_0171 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMJAP_0172 PF03707 Bacterial signalling protein N terminal repeat AMJAP_0172 PF00563 EAL domain AMJAP_0172 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_0173 PF00849 RNA pseudouridylate synthase AMJAP_0174 PF00563 EAL domain AMJAP_0174 PF03707 Bacterial signalling protein N terminal repeat AMJAP_0174 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_0175 PF01471 Putative peptidoglycan binding domain AMJAP_0175 PF03734 L,D-transpeptidase catalytic domain AMJAP_0177 PF12833 Helix-turn-helix domain AMJAP_0178 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_0179 PF00108 Thiolase, N-terminal domain AMJAP_0179 PF02803 Thiolase, C-terminal domain AMJAP_0180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJAP_0180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJAP_0180 PF02770 Acyl-CoA dehydrogenase, middle domain AMJAP_0181 PF00106 short chain dehydrogenase AMJAP_0182 PF00501 AMP-binding enzyme AMJAP_0182 PF13193 AMP-binding enzyme C-terminal domain AMJAP_0183 PF01569 PAP2 superfamily AMJAP_0184 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AMJAP_0186 PF00563 EAL domain AMJAP_0186 PF08668 HDOD domain AMJAP_0188 PF00920 Dehydratase family AMJAP_0194 PF00072 Response regulator receiver domain AMJAP_0194 PF00486 Transcriptional regulatory protein, C terminal AMJAP_0195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_0196 PF00583 Acetyltransferase (GNAT) family AMJAP_0196 PF00696 Amino acid kinase family AMJAP_0197 PF01546 Peptidase family M20/M25/M40 AMJAP_0197 PF07687 Peptidase dimerisation domain AMJAP_0198 PF01384 Phosphate transporter family AMJAP_0199 PF01865 Protein of unknown function DUF47 AMJAP_0200 PF08335 GlnD PII-uridylyltransferase AMJAP_0200 PF03710 Glutamate-ammonia ligase adenylyltransferase AMJAP_0201 PF01063 Amino-transferase class IV AMJAP_0202 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMJAP_0204 PF00535 Glycosyl transferase family 2 AMJAP_0207 PF01531 Glycosyl transferase family 11 AMJAP_0208 PF00535 Glycosyl transferase family 2 AMJAP_0209 PF03279 Bacterial lipid A biosynthesis acyltransferase AMJAP_0210 PF00005 ABC transporter AMJAP_0210 PF00664 ABC transporter transmembrane region AMJAP_0211 PF00294 pfkB family carbohydrate kinase AMJAP_0211 PF01467 Cytidylyltransferase-like AMJAP_0213 PF00248 Aldo/keto reductase family AMJAP_0214 PF01266 FAD dependent oxidoreductase AMJAP_0215 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMJAP_0216 PF13580 SIS domain AMJAP_0217 PF01491 Frataxin-like domain AMJAP_0218 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMJAP_0218 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMJAP_0219 PF01678 Diaminopimelate epimerase AMJAP_0221 PF00589 Phage integrase family AMJAP_0221 PF02899 Phage integrase, N-terminal SAM-like domain AMJAP_0225 PF12833 Helix-turn-helix domain AMJAP_0228 PF01575 MaoC like domain AMJAP_0230 PF13193 AMP-binding enzyme C-terminal domain AMJAP_0230 PF00501 AMP-binding enzyme AMJAP_0231 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_0231 PF00989 PAS fold AMJAP_0231 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_0232 PF00196 Bacterial regulatory proteins, luxR family AMJAP_0232 PF00072 Response regulator receiver domain AMJAP_0233 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMJAP_0233 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMJAP_0235 PF06969 HemN C-terminal domain AMJAP_0235 PF04055 Radical SAM superfamily AMJAP_0236 PF01725 Ham1 family AMJAP_0238 PF00561 alpha/beta hydrolase fold AMJAP_0238 PF07021 Methionine biosynthesis protein MetW AMJAP_0239 PF00561 alpha/beta hydrolase fold AMJAP_0240 PF02594 Uncharacterised ACR, YggU family COG1872 AMJAP_0241 PF02325 YGGT family AMJAP_0242 PF03807 NADP oxidoreductase coenzyme F420-dependent AMJAP_0242 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMJAP_0243 PF01168 Alanine racemase, N-terminal domain AMJAP_0244 PF00437 Type II/IV secretion system protein AMJAP_0245 PF00437 Type II/IV secretion system protein AMJAP_0246 PF01979 Amidohydrolase family AMJAP_0247 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMJAP_0247 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMJAP_0248 PF00156 Phosphoribosyl transferase domain AMJAP_0249 PF03652 Holliday junction resolvase AMJAP_0250 PF02622 Uncharacterized ACR, COG1678 AMJAP_0252 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMJAP_0252 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMJAP_0253 PF04452 RNA methyltransferase AMJAP_0254 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMJAP_0254 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMJAP_0254 PF02772 S-adenosylmethionine synthetase, central domain AMJAP_0255 PF00456 Transketolase, thiamine diphosphate binding domain AMJAP_0255 PF02780 Transketolase, C-terminal domain AMJAP_0255 PF02779 Transketolase, pyrimidine binding domain AMJAP_0256 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMJAP_0256 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMJAP_0257 PF00162 Phosphoglycerate kinase AMJAP_0258 PF01116 Fructose-bisphosphate aldolase class-II AMJAP_0260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_0260 PF03466 LysR substrate binding domain AMJAP_0265 PF03167 Uracil DNA glycosylase superfamily AMJAP_0267 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_0267 PF03466 LysR substrate binding domain AMJAP_0274 PF03880 DbpA RNA binding domain AMJAP_0274 PF00270 DEAD/DEAH box helicase AMJAP_0274 PF00271 Helicase conserved C-terminal domain AMJAP_0275 PF02146 Sir2 family AMJAP_0276 PF01274 Malate synthase AMJAP_0279 PF00924 Mechanosensitive ion channel AMJAP_0279 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMJAP_0279 PF12795 Mechanosensitive ion channel porin domain AMJAP_0281 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJAP_0281 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJAP_0282 PF06865 Pyrimidine/purine nucleoside phosphorylase AMJAP_0283 PF03466 LysR substrate binding domain AMJAP_0283 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_0284 PF07690 Major Facilitator Superfamily AMJAP_0285 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJAP_0286 PF03653 Uncharacterised protein family (UPF0093) AMJAP_0288 PF01209 ubiE/COQ5 methyltransferase family AMJAP_0290 PF07724 AAA domain (Cdc48 subfamily) AMJAP_0290 PF00004 ATPase family associated with various cellular activities (AAA) AMJAP_0291 PF00227 Proteasome subunit AMJAP_0293 PF00750 tRNA synthetases class I (R) AMJAP_0293 PF05746 DALR anticodon binding domain AMJAP_0293 PF03485 Arginyl tRNA synthetase N terminal domain AMJAP_0294 PF18074 Primosomal protein N C-terminal domain AMJAP_0294 PF00270 DEAD/DEAH box helicase AMJAP_0294 PF17764 3′ DNA-binding domain (3′BD) AMJAP_0294 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMJAP_0294 PF00271 Helicase conserved C-terminal domain AMJAP_0295 PF01197 Ribosomal protein L31 AMJAP_0296 PF00390 Malic enzyme, N-terminal domain AMJAP_0296 PF03949 Malic enzyme, NAD binding domain AMJAP_0297 PF00905 Penicillin binding protein transpeptidase domain AMJAP_0297 PF00912 Transglycosylase AMJAP_0297 PF17092 Penicillin-binding protein OB-like domain AMJAP_0298 PF11104 Type IV pilus assembly protein PilM; AMJAP_0299 PF05137 Fimbrial assembly protein (PilN) AMJAP_0300 PF04350 Pilus assembly protein, PilO AMJAP_0301 PF04351 Pilus assembly protein, PilP AMJAP_0302 PF07660 Secretin and TonB N terminus short domain AMJAP_0302 PF03958 Bacterial type II/III secretion system short domain AMJAP_0302 PF00263 Bacterial type II and III secretion system protein AMJAP_0302 PF11741 AMIN domain AMJAP_0303 PF01202 Shikimate kinase AMJAP_0304 PF01761 3-dehydroquinate synthase AMJAP_0306 PF04898 Glutamate synthase central domain AMJAP_0306 PF01645 Conserved region in glutamate synthase AMJAP_0306 PF01493 GXGXG motif AMJAP_0306 PF00310 Glutamine amidotransferases class-II AMJAP_0307 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_0307 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMJAP_0308 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMJAP_0309 PF00484 Carbonic anhydrase AMJAP_0310 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJAP_0311 PF18073 Rubredoxin metal binding domain AMJAP_0312 PF07238 PilZ domain AMJAP_0313 PF12848 ABC transporter AMJAP_0313 PF00005 ABC transporter AMJAP_0314 PF00464 Serine hydroxymethyltransferase AMJAP_0315 PF03477 ATP cone domain AMJAP_0316 PF01872 RibD C-terminal domain AMJAP_0316 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMJAP_0317 PF00677 Lumazine binding domain AMJAP_0318 PF00925 GTP cyclohydrolase II AMJAP_0318 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMJAP_0319 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMJAP_0320 PF01029 NusB family AMJAP_0321 PF00586 AIR synthase related protein, N-terminal domain AMJAP_0321 PF02769 AIR synthase related protein, C-terminal domain AMJAP_0322 PF04608 Phosphatidylglycerophosphatase A AMJAP_0324 PF00072 Response regulator receiver domain AMJAP_0324 PF00486 Transcriptional regulatory protein, C terminal AMJAP_0325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_0326 PF00925 GTP cyclohydrolase II AMJAP_0327 PF02780 Transketolase, C-terminal domain AMJAP_0327 PF02779 Transketolase, pyrimidine binding domain AMJAP_0327 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMJAP_0328 PF00348 Polyprenyl synthetase AMJAP_0329 PF02609 Exonuclease VII small subunit AMJAP_0330 PF01618 MotA/TolQ/ExbB proton channel family AMJAP_0331 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMJAP_0331 PF00691 OmpA family AMJAP_0332 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMJAP_0338 PF00202 Aminotransferase class-III AMJAP_0340 PF00034 Cytochrome c AMJAP_0343 PF00209 Sodium:neurotransmitter symporter family AMJAP_0344 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMJAP_0344 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMJAP_0350 PF01668 SmpB protein AMJAP_0351 PF00209 Sodium:neurotransmitter symporter family AMJAP_0352 PF03364 Polyketide cyclase / dehydrase and lipid transport AMJAP_0353 PF03658 RnfH family Ubiquitin AMJAP_0354 PF04355 SmpA / OmlA family AMJAP_0355 PF01475 Ferric uptake regulator family AMJAP_0356 PF02463 RecF/RecN/SMC N terminal domain AMJAP_0357 PF01025 GrpE AMJAP_0358 PF00012 Hsp70 protein AMJAP_0359 PF01556 DnaJ C terminal domain AMJAP_0359 PF00684 DnaJ central domain AMJAP_0359 PF00226 DnaJ domain AMJAP_0360 PF00132 Bacterial transferase hexapeptide (six repeats) AMJAP_0360 PF06426 Serine acetyltransferase, N-terminal AMJAP_0361 PF01113 Dihydrodipicolinate reductase, N-terminus AMJAP_0361 PF05173 Dihydrodipicolinate reductase, C-terminus AMJAP_0362 PF11944 Protein of unknown function (DUF3461) AMJAP_0363 PF01784 NIF3 (NGG1p interacting factor 3) AMJAP_0364 PF01914 MarC family integral membrane protein AMJAP_0365 PF01679 Proteolipid membrane potential modulator AMJAP_0368 PF12801 4Fe-4S binding domain AMJAP_0368 PF04205 FMN-binding domain AMJAP_0370 PF01618 MotA/TolQ/ExbB proton channel family AMJAP_0371 PF02472 Biopolymer transport protein ExbD/TolR AMJAP_0373 PF07715 TonB-dependent Receptor Plug Domain AMJAP_0373 PF00593 TonB dependent receptor AMJAP_0374 PF00293 NUDIX domain AMJAP_0375 PF00132 Bacterial transferase hexapeptide (six repeats) AMJAP_0377 PF01910 Thiamine-binding protein AMJAP_0378 PF00571 CBS domain AMJAP_0378 PF03471 Transporter associated domain AMJAP_0378 PF01595 Cyclin M transmembrane N-terminal domain AMJAP_0380 PF00448 SRP54-type protein, GTPase domain AMJAP_0380 PF02978 Signal peptide binding domain AMJAP_0380 PF02881 SRP54-type protein, helical bundle domain AMJAP_0381 PF00886 Ribosomal protein S16 AMJAP_0382 PF01782 RimM N-terminal domain AMJAP_0382 PF05239 PRC-barrel domain AMJAP_0383 PF01746 tRNA (Guanine-1)-methyltransferase AMJAP_0384 PF01245 Ribosomal protein L19 AMJAP_0386 PF02899 Phage integrase, N-terminal SAM-like domain AMJAP_0386 PF00589 Phage integrase family AMJAP_0387 PF13098 Thioredoxin-like domain AMJAP_0387 PF10411 Disulfide bond isomerase protein N-terminus AMJAP_0388 PF00742 Homoserine dehydrogenase AMJAP_0388 PF03447 Homoserine dehydrogenase, NAD binding domain AMJAP_0388 PF01842 ACT domain AMJAP_0389 PF00291 Pyridoxal-phosphate dependent enzyme AMJAP_0389 PF14821 Threonine synthase N terminus AMJAP_0391 PF01368 DHH family AMJAP_0391 PF17768 RecJ OB domain AMJAP_0391 PF02272 DHHA1 domain AMJAP_0393 PF01261 Xylose isomerase-like TIM barrel AMJAP_0394 PF04717 Type VI secretion system, phage-baseplate injector AMJAP_0395 PF13091 PLD-like domain AMJAP_0395 PF13396 Phospholipase_D-nuclease N-terminal AMJAP_0401 PF00916 Sulfate permease family AMJAP_0401 PF01740 STAS domain AMJAP_0402 PF00293 NUDIX domain AMJAP_0403 PF06853 Protein of unknown function (DUF1249) AMJAP_0404 PF00149 Calcineurin-like phosphoesterase AMJAP_0405 PF05728 Uncharacterised protein family (UPF0227) AMJAP_0406 PF01751 Toprim domain AMJAP_0406 PF00204 DNA gyrase B AMJAP_0406 PF00986 DNA gyrase B subunit, carboxyl terminus AMJAP_0406 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_0407 PF00521 DNA gyrase/topoisomerase IV, subunit A AMJAP_0407 PF03989 DNA gyrase C-terminal domain, beta-propeller AMJAP_0408 PF00575 S1 RNA binding domain AMJAP_0411 PF01810 LysE type translocator AMJAP_0412 PF01925 Sulfite exporter TauE/SafE AMJAP_0414 PF00171 Aldehyde dehydrogenase family AMJAP_0415 PF01467 Cytidylyltransferase-like AMJAP_0417 PF02590 Predicted SPOUT methyltransferase AMJAP_0418 PF03717 Penicillin-binding Protein dimerisation domain AMJAP_0418 PF00905 Penicillin binding protein transpeptidase domain AMJAP_0419 PF01098 Cell cycle protein AMJAP_0420 PF13406 Transglycosylase SLT domain AMJAP_0421 PF05036 Sporulation related domain AMJAP_0421 PF03330 Lytic transglycolase AMJAP_0422 PF07943 Penicillin-binding protein 5, C-terminal domain AMJAP_0422 PF00768 D-alanyl-D-alanine carboxypeptidase AMJAP_0423 PF01063 Amino-transferase class IV AMJAP_0424 PF04359 Protein of unknown function (DUF493) AMJAP_0425 PF03099 Biotin/lipoate A/B protein ligase family AMJAP_0426 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMJAP_0426 PF04055 Radical SAM superfamily AMJAP_0428 PF00535 Glycosyl transferase family 2 AMJAP_0429 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase AMJAP_0430 PF01569 PAP2 superfamily AMJAP_0434 PF03466 LysR substrate binding domain AMJAP_0434 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_0436 PF06144 DNA polymerase III, delta subunit AMJAP_0436 PF14840 Processivity clamp loader gamma complex DNA pol III C-term AMJAP_0438 PF08264 Anticodon-binding domain of tRNA AMJAP_0438 PF13603 Leucyl-tRNA synthetase, Domain 2 AMJAP_0438 PF00133 tRNA synthetases class I (I, L, M and V) AMJAP_0440 PF00795 Carbon-nitrogen hydrolase AMJAP_0441 PF03471 Transporter associated domain AMJAP_0441 PF00571 CBS domain AMJAP_0442 PF02130 Uncharacterized protein family UPF0054 AMJAP_0443 PF02562 PhoH-like protein AMJAP_0444 PF01938 TRAM domain AMJAP_0444 PF00919 Uncharacterized protein family UPF0004 AMJAP_0444 PF04055 Radical SAM superfamily AMJAP_0446 PF05656 Protein of unknown function (DUF805) AMJAP_0447 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_0447 PF08448 PAS fold AMJAP_0447 PF00563 EAL domain AMJAP_0448 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMJAP_0448 PF10135 Rod binding protein AMJAP_0449 PF04055 Radical SAM superfamily AMJAP_0450 PF09285 Elongation factor P, C-terminal AMJAP_0450 PF08207 Elongation factor P (EF-P) KOW-like domain AMJAP_0450 PF01132 Elongation factor P (EF-P) OB domain AMJAP_0451 PF00152 tRNA synthetases class II (D, K and N) AMJAP_0452 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_0452 PF03707 Bacterial signalling protein N terminal repeat AMJAP_0452 PF00563 EAL domain AMJAP_0454 PF00155 Aminotransferase class I and II AMJAP_0455 PF00682 HMGL-like AMJAP_0455 PF08502 LeuA allosteric (dimerisation) domain AMJAP_0457 PF00583 Acetyltransferase (GNAT) family AMJAP_0459 PF00072 Response regulator receiver domain AMJAP_0460 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_0460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_0462 PF16658 Class II release factor RF3, C-terminal domain AMJAP_0462 PF03144 Elongation factor Tu domain 2 AMJAP_0462 PF00009 Elongation factor Tu GTP binding domain AMJAP_0463 PF01026 TatD related DNase AMJAP_0465 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJAP_0465 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJAP_0466 PF13488 Glycine zipper AMJAP_0466 PF00691 OmpA family AMJAP_0471 PF01966 HD domain AMJAP_0471 PF08335 GlnD PII-uridylyltransferase AMJAP_0471 PF01842 ACT domain AMJAP_0471 PF01909 Nucleotidyltransferase domain AMJAP_0472 PF00557 Metallopeptidase family M24 AMJAP_0473 PF00318 Ribosomal protein S2 AMJAP_0474 PF00889 Elongation factor TS AMJAP_0475 PF00696 Amino acid kinase family AMJAP_0476 PF01765 Ribosome recycling factor AMJAP_0477 PF01255 Putative undecaprenyl diphosphate synthase AMJAP_0479 PF17820 PDZ domain AMJAP_0479 PF13180 PDZ domain AMJAP_0479 PF02163 Peptidase family M50 AMJAP_0480 PF01103 Surface antigen AMJAP_0480 PF07244 Surface antigen variable number repeat AMJAP_0482 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMJAP_0482 PF00132 Bacterial transferase hexapeptide (six repeats) AMJAP_0483 PF07977 FabA-like domain AMJAP_0484 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMJAP_0484 PF00132 Bacterial transferase hexapeptide (six repeats) AMJAP_0485 PF02684 Lipid-A-disaccharide synthetase AMJAP_0486 PF01351 Ribonuclease HII AMJAP_0487 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMJAP_0487 PF01336 OB-fold nucleic acid binding domain AMJAP_0487 PF02811 PHP domain AMJAP_0487 PF14579 Helix-hairpin-helix motif AMJAP_0487 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMJAP_0488 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMJAP_0489 PF01171 PP-loop family AMJAP_0489 PF09179 TilS substrate binding domain AMJAP_0489 PF11734 TilS substrate C-terminal domain AMJAP_0490 PF06418 CTP synthase N-terminus AMJAP_0490 PF00117 Glutamine amidotransferase class-I AMJAP_0491 PF00113 Enolase, C-terminal TIM barrel domain AMJAP_0491 PF03952 Enolase, N-terminal domain AMJAP_0492 PF04977 Septum formation initiator AMJAP_0493 PF01142 tRNA pseudouridine synthase D (TruD) AMJAP_0494 PF01975 Survival protein SurE AMJAP_0497 PF01551 Peptidase family M23 AMJAP_0497 PF01476 LysM domain AMJAP_0498 PF00140 Sigma-70 factor, region 1.2 AMJAP_0498 PF04542 Sigma-70 region 2 AMJAP_0498 PF04539 Sigma-70 region 3 AMJAP_0498 PF04545 Sigma-70, region 4 AMJAP_0499 PF00488 MutS domain V AMJAP_0499 PF05190 MutS family domain IV AMJAP_0499 PF05192 MutS domain III AMJAP_0499 PF05188 MutS domain II AMJAP_0499 PF01624 MutS domain I AMJAP_0500 PF00535 Glycosyl transferase family 2 AMJAP_0505 PF02563 Polysaccharide biosynthesis/export protein AMJAP_0505 PF10531 SLBB domain AMJAP_0507 PF00005 ABC transporter AMJAP_0509 PF16363 GDP-mannose 4,6 dehydratase AMJAP_0510 PF04321 RmlD substrate binding domain AMJAP_0511 PF00483 Nucleotidyl transferase AMJAP_0512 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMJAP_0513 PF00535 Glycosyl transferase family 2 AMJAP_0515 PF05159 Capsule polysaccharide biosynthesis protein AMJAP_0516 PF00106 short chain dehydrogenase AMJAP_0517 PF05159 Capsule polysaccharide biosynthesis protein AMJAP_0518 PF00155 Aminotransferase class I and II AMJAP_0519 PF08659 KR domain AMJAP_0519 PF00698 Acyl transferase domain AMJAP_0519 PF16197 Ketoacyl-synthetase C-terminal extension AMJAP_0519 PF08240 Alcohol dehydrogenase GroES-like domain AMJAP_0519 PF14765 Polyketide synthase dehydratase AMJAP_0519 PF00550 Phosphopantetheine attachment site AMJAP_0519 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJAP_0519 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJAP_0520 PF00067 Cytochrome P450 AMJAP_0522 PF02464 Competence-damaged protein AMJAP_0523 PF00154 recA bacterial DNA recombination protein AMJAP_0524 PF02631 RecX family AMJAP_0525 PF01411 tRNA synthetases class II (A) AMJAP_0525 PF02272 DHHA1 domain AMJAP_0525 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMJAP_0526 PF00696 Amino acid kinase family AMJAP_0526 PF13840 ACT domain AMJAP_0526 PF01842 ACT domain AMJAP_0527 PF02599 Global regulator protein family AMJAP_0529 PF03412 Peptidase C39 family AMJAP_0529 PF00664 ABC transporter transmembrane region AMJAP_0529 PF00005 ABC transporter AMJAP_0530 PF00005 ABC transporter AMJAP_0530 PF00664 ABC transporter transmembrane region AMJAP_0530 PF03412 Peptidase C39 family AMJAP_0532 PF02926 THUMP domain AMJAP_0532 PF02568 Thiamine biosynthesis protein (ThiI) AMJAP_0533 PF04277 Oxaloacetate decarboxylase, gamma chain AMJAP_0534 PF02436 Conserved carboxylase domain AMJAP_0534 PF00682 HMGL-like AMJAP_0534 PF00364 Biotin-requiring enzyme AMJAP_0535 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit AMJAP_0536 PF00850 Histone deacetylase domain AMJAP_0537 PF00486 Transcriptional regulatory protein, C terminal AMJAP_0537 PF00072 Response regulator receiver domain AMJAP_0542 PF01584 CheW-like domain AMJAP_0542 PF00072 Response regulator receiver domain AMJAP_0543 PF03705 CheR methyltransferase, all-alpha domain AMJAP_0543 PF01739 CheR methyltransferase, SAM binding domain AMJAP_0544 PF00460 Flagella basal body rod protein AMJAP_0545 PF00460 Flagella basal body rod protein AMJAP_0545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJAP_0546 PF03963 Flagellar hook capping protein - N-terminal region AMJAP_0547 PF00460 Flagella basal body rod protein AMJAP_0547 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJAP_0547 PF07559 Flagellar basal body protein FlaE AMJAP_0548 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJAP_0548 PF00460 Flagella basal body rod protein AMJAP_0549 PF00460 Flagella basal body rod protein AMJAP_0549 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMJAP_0550 PF02107 Flagellar L-ring protein AMJAP_0551 PF02119 Flagellar P-ring protein AMJAP_0552 PF10135 Rod binding protein AMJAP_0552 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMJAP_0554 PF00669 Bacterial flagellin N-terminal helical region AMJAP_0555 PF02561 Flagellar protein FliS AMJAP_0556 PF02465 Flagellar hook-associated protein 2 N-terminus AMJAP_0556 PF07195 Flagellar hook-associated protein 2 C-terminus AMJAP_0556 PF07196 Flagellin hook IN motif AMJAP_0558 PF07196 Flagellin hook IN motif AMJAP_0558 PF00700 Bacterial flagellin C-terminal helical region AMJAP_0558 PF00669 Bacterial flagellin N-terminal helical region AMJAP_0559 PF06490 Flagellar regulatory protein FleQ AMJAP_0559 PF02954 Bacterial regulatory protein, Fis family AMJAP_0559 PF00158 Sigma-54 interaction domain AMJAP_0560 PF13188 PAS domain AMJAP_0560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_0560 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_0561 PF00072 Response regulator receiver domain AMJAP_0561 PF00158 Sigma-54 interaction domain AMJAP_0561 PF02954 Bacterial regulatory protein, Fis family AMJAP_0562 PF00501 AMP-binding enzyme AMJAP_0562 PF13193 AMP-binding enzyme C-terminal domain AMJAP_0562 PF16177 Acetyl-coenzyme A synthetase N-terminus AMJAP_0563 PF00072 Response regulator receiver domain AMJAP_0563 PF00196 Bacterial regulatory proteins, luxR family AMJAP_0565 PF09456 RcsC Alpha-Beta-Loop (ABL) AMJAP_0565 PF00072 Response regulator receiver domain AMJAP_0565 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_0565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_0567 PF00474 Sodium:solute symporter family AMJAP_0569 PF00929 Exonuclease AMJAP_0569 PF02811 PHP domain AMJAP_0569 PF14579 Helix-hairpin-helix motif AMJAP_0569 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMJAP_0569 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMJAP_0569 PF11490 DNA polymerase III polC-type N-terminus II AMJAP_0570 PF02049 Flagellar hook-basal body complex protein FliE AMJAP_0571 PF01514 Secretory protein of YscJ/FliF family AMJAP_0571 PF08345 Flagellar M-ring protein C-terminal AMJAP_0572 PF14842 FliG N-terminal domain AMJAP_0572 PF01706 FliG C-terminal domain AMJAP_0572 PF14841 FliG middle domain AMJAP_0574 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJAP_0574 PF18269 T3SS EscN ATPase C-terminal domain AMJAP_0576 PF02120 Flagellar hook-length control protein FliK AMJAP_0578 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMJAP_0578 PF02154 Flagellar motor switch protein FliM AMJAP_0579 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMJAP_0580 PF04347 Flagellar biosynthesis protein, FliO AMJAP_0581 PF00813 FliP family AMJAP_0582 PF01313 Bacterial export proteins, family 3 AMJAP_0583 PF01311 Bacterial export proteins, family 1 AMJAP_0584 PF01312 FlhB HrpN YscU SpaS Family AMJAP_0585 PF00771 FHIPEP family AMJAP_0586 PF00448 SRP54-type protein, GTPase domain AMJAP_0587 PF10609 NUBPL iron-transfer P-loop NTPase AMJAP_0588 PF04542 Sigma-70 region 2 AMJAP_0588 PF04539 Sigma-70 region 3 AMJAP_0588 PF04545 Sigma-70, region 4 AMJAP_0589 PF00072 Response regulator receiver domain AMJAP_0590 PF04344 Chemotaxis phosphatase, CheZ AMJAP_0591 PF01584 CheW-like domain AMJAP_0591 PF02895 Signal transducing histidine kinase, homodimeric domain AMJAP_0591 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_0591 PF07194 P2 response regulator binding domain AMJAP_0591 PF01627 Hpt domain AMJAP_0592 PF01339 CheB methylesterase AMJAP_0592 PF00072 Response regulator receiver domain AMJAP_0593 PF01618 MotA/TolQ/ExbB proton channel family AMJAP_0594 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMJAP_0594 PF00691 OmpA family AMJAP_0595 PF13614 AAA domain AMJAP_0598 PF01312 FlhB HrpN YscU SpaS Family AMJAP_0600 PF00005 ABC transporter AMJAP_0601 PF03379 CcmB protein AMJAP_0602 PF01578 Cytochrome C assembly protein AMJAP_0604 PF03100 CcmE AMJAP_0605 PF01578 Cytochrome C assembly protein AMJAP_0605 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMJAP_0606 PF08534 Redoxin AMJAP_0607 PF03918 Cytochrome C biogenesis protein AMJAP_0609 PF04354 ZipA, C-terminal FtsZ-binding domain AMJAP_0609 PF04354 ZipA, C-terminal FtsZ-binding domain AMJAP_0610 PF00533 BRCA1 C Terminus (BRCT) domain AMJAP_0610 PF03120 NAD-dependent DNA ligase OB-fold domain AMJAP_0610 PF12826 Helix-hairpin-helix motif AMJAP_0610 PF01653 NAD-dependent DNA ligase adenylation domain AMJAP_0610 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMJAP_0612 PF06794 Uncharacterised protein family (UPF0270) AMJAP_0615 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AMJAP_0615 PF01266 FAD dependent oxidoreductase AMJAP_0616 PF16363 GDP-mannose 4,6 dehydratase AMJAP_0617 PF01370 NAD dependent epimerase/dehydratase family AMJAP_0618 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMJAP_0619 PF00535 Glycosyl transferase family 2 AMJAP_0622 PF01531 Glycosyl transferase family 11 AMJAP_0623 PF01370 NAD dependent epimerase/dehydratase family AMJAP_0624 PF00535 Glycosyl transferase family 2 AMJAP_0625 PF00535 Glycosyl transferase family 2 AMJAP_0627 PF01370 NAD dependent epimerase/dehydratase family AMJAP_0628 PF02397 Bacterial sugar transferase AMJAP_0629 PF02719 Polysaccharide biosynthesis protein AMJAP_0630 PF04546 Sigma-70, non-essential region AMJAP_0630 PF03979 Sigma-70 factor, region 1.1 AMJAP_0630 PF00140 Sigma-70 factor, region 1.2 AMJAP_0630 PF04539 Sigma-70 region 3 AMJAP_0630 PF04545 Sigma-70, region 4 AMJAP_0630 PF04542 Sigma-70 region 2 AMJAP_0631 PF10410 DnaB-helicase binding domain of primase AMJAP_0631 PF01807 CHC2 zinc finger AMJAP_0631 PF08278 DNA primase DnaG DnaB-binding AMJAP_0631 PF13662 Toprim domain AMJAP_0631 PF08275 DNA primase catalytic core, N-terminal domain AMJAP_0633 PF01165 Ribosomal protein S21 AMJAP_0634 PF00814 Glycoprotease family AMJAP_0635 PF02660 Glycerol-3-phosphate acyltransferase AMJAP_0638 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMJAP_0639 PF04011 LemA family AMJAP_0640 PF01435 Peptidase family M48 AMJAP_0642 PF01966 HD domain AMJAP_0642 PF12627 Probable RNA and SrmB- binding site of polymerase A AMJAP_0642 PF01743 Poly A polymerase head domain AMJAP_0643 PF00581 Rhodanese-like domain AMJAP_0644 PF00149 Calcineurin-like phosphoesterase AMJAP_0645 PF04379 ApaG domain AMJAP_0646 PF00398 Ribosomal RNA adenine dimethylase AMJAP_0647 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMJAP_0648 PF00639 PPIC-type PPIASE domain AMJAP_0648 PF09312 SurA N-terminal domain AMJAP_0649 PF04453 LPS transport system D AMJAP_0649 PF03968 OstA-like protein AMJAP_0650 PF01636 Phosphotransferase enzyme family AMJAP_0651 PF00483 Nucleotidyl transferase AMJAP_0652 PF05099 Tellurite resistance protein TerB AMJAP_0652 PF00226 DnaJ domain AMJAP_0654 PF00834 Ribulose-phosphate 3 epimerase family AMJAP_0655 PF13419 Haloacid dehalogenase-like hydrolase AMJAP_0656 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_0656 PF03466 LysR substrate binding domain AMJAP_0657 PF04715 Anthranilate synthase component I, N terminal region AMJAP_0657 PF00425 chorismate binding enzyme AMJAP_0659 PF08479 POTRA domain, ShlB-type AMJAP_0659 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AMJAP_0664 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath AMJAP_0666 PF05947 Type VI secretion system, TssF AMJAP_0668 PF17871 AAA lid domain AMJAP_0668 PF10431 C-terminal, D2-small domain, of ClpB protein AMJAP_0668 PF07724 AAA domain (Cdc48 subfamily) AMJAP_0668 PF00004 ATPase family associated with various cellular activities (AAA) AMJAP_0669 PF00158 Sigma-54 interaction domain AMJAP_0669 PF01590 GAF domain AMJAP_0669 PF02954 Bacterial regulatory protein, Fis family AMJAP_0670 PF04717 Type VI secretion system, phage-baseplate injector AMJAP_0678 PF05638 Type VI secretion system effector, Hcp AMJAP_0680 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE AMJAP_0681 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMJAP_0681 PF00691 OmpA family AMJAP_0682 PF06761 Intracellular multiplication and human macrophage-killing AMJAP_0682 PF14331 ImcF-related N-terminal domain AMJAP_0682 PF06744 Type VI secretion protein IcmF C-terminal AMJAP_0685 PF00069 Protein kinase domain AMJAP_0685 PF03793 PASTA domain AMJAP_0687 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMJAP_0687 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJAP_0688 PF01047 MarR family AMJAP_0690 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_0691 PF00571 CBS domain AMJAP_0691 PF00005 ABC transporter AMJAP_0692 PF05675 Protein of unknown function (DUF817) AMJAP_0696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_0696 PF03466 LysR substrate binding domain AMJAP_0697 PF00171 Aldehyde dehydrogenase family AMJAP_0698 PF01244 Membrane dipeptidase (Peptidase family M19) AMJAP_0699 PF02028 BCCT, betaine/carnitine/choline family transporter AMJAP_0702 PF09905 DNA-binding protein VF530 AMJAP_0704 PF02152 Dihydroneopterin aldolase AMJAP_0712 PF00117 Glutamine amidotransferase class-I AMJAP_0713 PF00591 Glycosyl transferase family, a/b domain AMJAP_0713 PF02885 Glycosyl transferase family, helical bundle domain AMJAP_0714 PF00218 Indole-3-glycerol phosphate synthase AMJAP_0715 PF02566 OsmC-like protein AMJAP_0716 PF00857 Isochorismatase family AMJAP_0717 PF12833 Helix-turn-helix domain AMJAP_0717 PF01965 DJ-1/PfpI family AMJAP_0719 PF01250 Ribosomal protein S6 AMJAP_0720 PF01084 Ribosomal protein S18 AMJAP_0721 PF03948 Ribosomal protein L9, C-terminal domain AMJAP_0721 PF01281 Ribosomal protein L9, N-terminal domain AMJAP_0722 PF00772 DnaB-like helicase N terminal domain AMJAP_0722 PF03796 DnaB-like helicase C terminal domain AMJAP_0724 PF01209 ubiE/COQ5 methyltransferase family AMJAP_0727 PF00202 Aminotransferase class-III AMJAP_0729 PF18389 TrmO C-terminal domain AMJAP_0729 PF01980 tRNA-methyltransferase O AMJAP_0731 PF00156 Phosphoribosyl transferase domain AMJAP_0732 PF06968 Biotin and Thiamin Synthesis associated domain AMJAP_0732 PF04055 Radical SAM superfamily AMJAP_0733 PF00155 Aminotransferase class I and II AMJAP_0734 PF00561 alpha/beta hydrolase fold AMJAP_0735 PF08241 Methyltransferase domain AMJAP_0735 PF12697 Alpha/beta hydrolase family AMJAP_0742 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMJAP_0742 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMJAP_0745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_0745 PF03466 LysR substrate binding domain AMJAP_0747 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_0747 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMJAP_0748 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJAP_0750 PF04324 BFD-like [2Fe-2S] binding domain AMJAP_0750 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_0751 PF01266 FAD dependent oxidoreductase AMJAP_0752 PF01042 Endoribonuclease L-PSP AMJAP_0753 PF12697 Alpha/beta hydrolase family AMJAP_0754 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMJAP_0754 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMJAP_0756 PF02601 Exonuclease VII, large subunit AMJAP_0756 PF13742 OB-fold nucleic acid binding domain AMJAP_0757 PF00478 IMP dehydrogenase / GMP reductase domain AMJAP_0757 PF00571 CBS domain AMJAP_0758 PF00117 Glutamine amidotransferase class-I AMJAP_0758 PF02540 NAD synthase AMJAP_0758 PF00958 GMP synthase C terminal domain AMJAP_0759 PF01757 Acyltransferase family AMJAP_0760 PF01757 Acyltransferase family AMJAP_0761 PF14437 MafB19-like deaminase AMJAP_0762 PF00246 Zinc carboxypeptidase AMJAP_0763 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJAP_0763 PF01464 Transglycosylase SLT domain AMJAP_0764 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMJAP_0764 PF02769 AIR synthase related protein, C-terminal domain AMJAP_0764 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMJAP_0767 PF01389 OmpA-like transmembrane domain AMJAP_0767 PF00691 OmpA family AMJAP_0768 PF03795 YCII-related domain AMJAP_0769 PF04279 Intracellular septation protein A AMJAP_0770 PF02811 PHP domain AMJAP_0771 PF01300 Telomere recombination AMJAP_0772 PF00816 H-NS histone family AMJAP_0773 PF01479 S4 domain AMJAP_0773 PF00849 RNA pseudouridylate synthase AMJAP_0774 PF00106 short chain dehydrogenase AMJAP_0775 PF13419 Haloacid dehalogenase-like hydrolase AMJAP_0777 PF03989 DNA gyrase C-terminal domain, beta-propeller AMJAP_0777 PF00521 DNA gyrase/topoisomerase IV, subunit A AMJAP_0778 PF00266 Aminotransferase class-V AMJAP_0779 PF01842 ACT domain AMJAP_0779 PF01817 Chorismate mutase type II AMJAP_0779 PF00800 Prephenate dehydratase AMJAP_0780 PF00155 Aminotransferase class I and II AMJAP_0781 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMJAP_0782 PF02224 Cytidylate kinase AMJAP_0783 PF00575 S1 RNA binding domain AMJAP_0784 PF00216 Bacterial DNA-binding protein AMJAP_0786 PF18073 Rubredoxin metal binding domain AMJAP_0787 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMJAP_0790 PF02580 D-Tyr-tRNA(Tyr) deacylase AMJAP_0791 PF00561 alpha/beta hydrolase fold AMJAP_0792 PF00679 Elongation factor G C-terminus AMJAP_0792 PF03144 Elongation factor Tu domain 2 AMJAP_0792 PF00009 Elongation factor Tu GTP binding domain AMJAP_0793 PF00120 Glutamine synthetase, catalytic domain AMJAP_0793 PF03951 Glutamine synthetase, beta-Grasp domain AMJAP_0794 PF00989 PAS fold AMJAP_0794 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_0794 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_0795 PF02954 Bacterial regulatory protein, Fis family AMJAP_0795 PF00072 Response regulator receiver domain AMJAP_0795 PF00158 Sigma-54 interaction domain AMJAP_0796 PF00588 SpoU rRNA Methylase family AMJAP_0797 PF02556 Preprotein translocase subunit SecB AMJAP_0798 PF00462 Glutaredoxin AMJAP_0799 PF00581 Rhodanese-like domain AMJAP_0800 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AMJAP_0800 PF01676 Metalloenzyme superfamily AMJAP_0801 PF01551 Peptidase family M23 AMJAP_0802 PF03572 Peptidase family S41 AMJAP_0802 PF13180 PDZ domain AMJAP_0805 PF00440 Bacterial regulatory proteins, tetR family AMJAP_0806 PF00696 Amino acid kinase family AMJAP_0807 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMJAP_0807 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMJAP_0807 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMJAP_0807 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMJAP_0808 PF00692 dUTPase AMJAP_0809 PF02441 Flavoprotein AMJAP_0809 PF04127 DNA / pantothenate metabolism flavoprotein AMJAP_0810 PF04002 RadC-like JAB domain AMJAP_0811 PF00830 Ribosomal L28 family AMJAP_0812 PF00471 Ribosomal protein L33 AMJAP_0813 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMJAP_0813 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMJAP_0813 PF06827 Zinc finger found in FPG and IleRS AMJAP_0815 PF03707 Bacterial signalling protein N terminal repeat AMJAP_0815 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_0815 PF00563 EAL domain AMJAP_0816 PF01569 PAP2 superfamily AMJAP_0818 PF08543 Phosphomethylpyrimidine kinase AMJAP_0819 PF13667 ThiC-associated domain AMJAP_0819 PF01964 Radical SAM ThiC family AMJAP_0823 PF00753 Metallo-beta-lactamase superfamily AMJAP_0825 PF03969 AFG1-like ATPase AMJAP_0826 PF03099 Biotin/lipoate A/B protein ligase family AMJAP_0827 PF00365 Phosphofructokinase AMJAP_0834 PF09997 Predicted membrane protein (DUF2238) AMJAP_0838 PF02913 FAD linked oxidases, C-terminal domain AMJAP_0838 PF01565 FAD binding domain AMJAP_0839 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_0841 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJAP_0842 PF07729 FCD domain AMJAP_0842 PF00392 Bacterial regulatory proteins, gntR family AMJAP_0843 PF17831 Pyruvate dehydrogenase E1 component middle domain AMJAP_0843 PF00456 Transketolase, thiamine diphosphate binding domain AMJAP_0844 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMJAP_0844 PF02817 e3 binding domain AMJAP_0844 PF00364 Biotin-requiring enzyme AMJAP_0845 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMJAP_0845 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMJAP_0845 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMJAP_0846 PF01370 NAD dependent epimerase/dehydratase family AMJAP_0847 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AMJAP_0847 PF10996 Beta-Casp domain AMJAP_0847 PF00753 Metallo-beta-lactamase superfamily AMJAP_0851 PF02397 Bacterial sugar transferase AMJAP_0852 PF03808 Glycosyl transferase WecB/TagA/CpsF family AMJAP_0853 PF00534 Glycosyl transferases group 1 AMJAP_0854 PF00534 Glycosyl transferases group 1 AMJAP_0854 PF13439 Glycosyltransferase Family 4 AMJAP_0861 PF00483 Nucleotidyl transferase AMJAP_0861 PF01050 Mannose-6-phosphate isomerase AMJAP_0862 PF00009 Elongation factor Tu GTP binding domain AMJAP_0863 PF01507 Phosphoadenosine phosphosulfate reductase family AMJAP_0864 PF03600 Citrate transporter AMJAP_0864 PF02080 TrkA-C domain AMJAP_0865 PF00459 Inositol monophosphatase family AMJAP_0866 PF16363 GDP-mannose 4,6 dehydratase AMJAP_0869 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMJAP_0869 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMJAP_0869 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMJAP_0869 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMJAP_0871 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMJAP_0871 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMJAP_0871 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMJAP_0872 PF00342 Phosphoglucose isomerase AMJAP_0873 PF00483 Nucleotidyl transferase AMJAP_0876 PF13614 AAA domain AMJAP_0879 PF00994 Probable molybdopterin binding domain AMJAP_0880 PF00994 Probable molybdopterin binding domain AMJAP_0880 PF03454 MoeA C-terminal region (domain IV) AMJAP_0880 PF03453 MoeA N-terminal region (domain I and II) AMJAP_0881 PF02597 ThiS family AMJAP_0882 PF12804 MobA-like NTP transferase domain AMJAP_0883 PF03788 LrgA family AMJAP_0884 PF04172 LrgB-like family AMJAP_0885 PF03969 AFG1-like ATPase AMJAP_0886 PF00572 Ribosomal protein L13 AMJAP_0887 PF00380 Ribosomal protein S9/S16 AMJAP_0888 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMJAP_0888 PF00355 Rieske [2Fe-2S] domain AMJAP_0889 PF00032 Cytochrome b(C-terminal)/b6/petD AMJAP_0889 PF00033 Cytochrome b/b6/petB AMJAP_0890 PF02167 Cytochrome C1 family AMJAP_0891 PF00043 Glutathione S-transferase, C-terminal domain AMJAP_0891 PF02798 Glutathione S-transferase, N-terminal domain AMJAP_0892 PF04386 Stringent starvation protein B AMJAP_0893 PF04972 BON domain AMJAP_0894 PF13580 SIS domain AMJAP_0895 PF02021 Uncharacterised protein family UPF0102 AMJAP_0896 PF04348 LppC putative lipoprotein AMJAP_0897 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJAP_0902 PF16861 Carbamoyltransferase C-terminus AMJAP_0902 PF02543 Carbamoyltransferase N-terminus AMJAP_0903 PF02381 MraZ protein, putative antitoxin-like AMJAP_0904 PF01795 MraW methylase family AMJAP_0906 PF00905 Penicillin binding protein transpeptidase domain AMJAP_0906 PF03717 Penicillin-binding Protein dimerisation domain AMJAP_0907 PF08245 Mur ligase middle domain AMJAP_0907 PF01225 Mur ligase family, catalytic domain AMJAP_0907 PF02875 Mur ligase family, glutamate ligase domain AMJAP_0908 PF01225 Mur ligase family, catalytic domain AMJAP_0908 PF02875 Mur ligase family, glutamate ligase domain AMJAP_0908 PF08245 Mur ligase middle domain AMJAP_0909 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMJAP_0909 PF00953 Glycosyl transferase family 4 AMJAP_0910 PF08245 Mur ligase middle domain AMJAP_0910 PF02875 Mur ligase family, glutamate ligase domain AMJAP_0911 PF01098 Cell cycle protein AMJAP_0912 PF03033 Glycosyltransferase family 28 N-terminal domain AMJAP_0912 PF04101 Glycosyltransferase family 28 C-terminal domain AMJAP_0913 PF08245 Mur ligase middle domain AMJAP_0913 PF02875 Mur ligase family, glutamate ligase domain AMJAP_0913 PF01225 Mur ligase family, catalytic domain AMJAP_0914 PF07478 D-ala D-ala ligase C-terminus AMJAP_0914 PF01820 D-ala D-ala ligase N-terminus AMJAP_0915 PF08478 POTRA domain, FtsQ-type AMJAP_0915 PF03799 Cell division protein FtsQ AMJAP_0916 PF02491 SHS2 domain inserted in FTSA AMJAP_0917 PF00091 Tubulin/FtsZ family, GTPase domain AMJAP_0917 PF12327 FtsZ family, C-terminal domain AMJAP_0918 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMJAP_0919 PF07516 SecA Wing and Scaffold domain AMJAP_0919 PF07517 SecA DEAD-like domain AMJAP_0919 PF02810 SEC-C motif AMJAP_0919 PF01043 SecA preprotein cross-linking domain AMJAP_0920 PF01960 ArgJ family AMJAP_0921 PF02581 Thiamine monophosphate synthase AMJAP_0922 PF03884 DNA gyrase inhibitor YacG AMJAP_0923 PF01121 Dephospho-CoA kinase AMJAP_0924 PF01478 Type IV leader peptidase family AMJAP_0924 PF06750 Bacterial Peptidase A24 N-terminal domain AMJAP_0925 PF00482 Type II secretion system (T2SS), protein F AMJAP_0926 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMJAP_0926 PF00437 Type II/IV secretion system protein AMJAP_0927 PF07963 Prokaryotic N-terminal methylation motif AMJAP_0927 PF00114 Pilin (bacterial filament) AMJAP_0929 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMJAP_0929 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMJAP_0930 PF01510 N-acetylmuramoyl-L-alanine amidase AMJAP_0931 PF17113 Regulatory signalling modulator protein AmpE AMJAP_0932 PF00005 ABC transporter AMJAP_0932 PF08402 TOBE domain AMJAP_0933 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_0934 PF13416 Bacterial extracellular solute-binding protein AMJAP_0936 PF01554 MatE AMJAP_0937 PF00106 short chain dehydrogenase AMJAP_0939 PF02810 SEC-C motif AMJAP_0940 PF08411 Exonuclease C-terminal AMJAP_0940 PF00929 Exonuclease AMJAP_0942 PF00675 Insulinase (Peptidase family M16) AMJAP_0942 PF05193 Peptidase M16 inactive domain AMJAP_0944 PF02080 TrkA-C domain AMJAP_0944 PF02254 TrkA-N domain AMJAP_0945 PF00892 EamA-like transporter family AMJAP_0947 PF03883 Peroxide stress protein YaaA AMJAP_0948 PF00579 tRNA synthetases class I (W and Y) AMJAP_0949 PF00581 Rhodanese-like domain AMJAP_0950 PF04237 YjbR AMJAP_0951 PF04261 Dyp-type peroxidase family AMJAP_0953 PF00291 Pyridoxal-phosphate dependent enzyme AMJAP_0957 PF00793 DAHP synthetase I family AMJAP_0959 PF01243 Pyridoxamine 5'-phosphate oxidase AMJAP_0966 PF00317 Ribonucleotide reductase, all-alpha domain AMJAP_0966 PF02867 Ribonucleotide reductase, barrel domain AMJAP_0966 PF03477 ATP cone domain AMJAP_0967 PF00268 Ribonucleotide reductase, small chain AMJAP_0968 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJAP_0970 PF09905 DNA-binding protein VF530 AMJAP_0972 PF10576 Iron-sulfur binding domain of endonuclease III AMJAP_0972 PF00730 HhH-GPD superfamily base excision DNA repair protein AMJAP_0972 PF00633 Helix-hairpin-helix motif AMJAP_0975 PF02508 Rnf-Nqr subunit, membrane protein AMJAP_0976 PF04205 FMN-binding domain AMJAP_0977 PF03116 NQR2, RnfD, RnfE family AMJAP_0978 PF12838 4Fe-4S dicluster domain AMJAP_0978 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMJAP_0978 PF10531 SLBB domain AMJAP_0978 PF13375 RnfC Barrel sandwich hybrid domain AMJAP_0979 PF04060 Putative Fe-S cluster AMJAP_0980 PF02508 Rnf-Nqr subunit, membrane protein AMJAP_0981 PF00009 Elongation factor Tu GTP binding domain AMJAP_0982 PF01507 Phosphoadenosine phosphosulfate reductase family AMJAP_0983 PF01925 Sulfite exporter TauE/SafE AMJAP_0984 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMJAP_0984 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMJAP_0986 PF01507 Phosphoadenosine phosphosulfate reductase family AMJAP_0987 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMJAP_0987 PF14824 Sirohaem biosynthesis protein central AMJAP_0987 PF10414 Sirohaem synthase dimerisation region AMJAP_0990 PF00561 alpha/beta hydrolase fold AMJAP_0991 PF01541 GIY-YIG catalytic domain AMJAP_0992 PF01979 Amidohydrolase family AMJAP_0993 PF17763 Glutaminase/Asparaginase C-terminal domain AMJAP_0993 PF00710 Asparaginase, N-terminal AMJAP_0996 PF01636 Phosphotransferase enzyme family AMJAP_0997 PF04893 Yip1 domain AMJAP_0998 PF01177 Asp/Glu/Hydantoin racemase AMJAP_0999 PF17151 Periplasmic sensor domain AMJAP_0999 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1000 PF00768 D-alanyl-D-alanine carboxypeptidase AMJAP_1002 PF00155 Aminotransferase class I and II AMJAP_1003 PF00795 Carbon-nitrogen hydrolase AMJAP_1007 PF04408 Helicase associated domain (HA2) AMJAP_1007 PF00271 Helicase conserved C-terminal domain AMJAP_1007 PF00270 DEAD/DEAH box helicase AMJAP_1007 PF08482 ATP-dependent helicase C-terminal AMJAP_1008 PF13419 Haloacid dehalogenase-like hydrolase AMJAP_1009 PF17954 Quercetinase C-terminal cupin domain AMJAP_1009 PF02678 Pirin AMJAP_1011 PF01645 Conserved region in glutamate synthase AMJAP_1012 PF05726 Pirin C-terminal cupin domain AMJAP_1012 PF02678 Pirin AMJAP_1013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1013 PF03466 LysR substrate binding domain AMJAP_1014 PF13409 Glutathione S-transferase, N-terminal domain AMJAP_1018 PF03466 LysR substrate binding domain AMJAP_1018 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1023 PF00849 RNA pseudouridylate synthase AMJAP_1023 PF01479 S4 domain AMJAP_1026 PF01817 Chorismate mutase type II AMJAP_1026 PF00800 Prephenate dehydratase AMJAP_1027 PF00588 SpoU rRNA Methylase family AMJAP_1027 PF12105 SpoU, rRNA methylase, C-terminal AMJAP_1028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_1028 PF02743 Cache domain AMJAP_1028 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_1029 PF02954 Bacterial regulatory protein, Fis family AMJAP_1029 PF00158 Sigma-54 interaction domain AMJAP_1029 PF00072 Response regulator receiver domain AMJAP_1035 PF13579 Glycosyl transferase 4-like domain AMJAP_1035 PF00534 Glycosyl transferases group 1 AMJAP_1036 PF01037 Lrp/AsnC ligand binding domain AMJAP_1037 PF00682 HMGL-like AMJAP_1037 PF08502 LeuA allosteric (dimerisation) domain AMJAP_1038 PF00795 Carbon-nitrogen hydrolase AMJAP_1040 PF01638 HxlR-like helix-turn-helix AMJAP_1041 PF00270 DEAD/DEAH box helicase AMJAP_1041 PF00271 Helicase conserved C-terminal domain AMJAP_1042 PF18337 RapA N-terminal Tudor like domain AMJAP_1042 PF00271 Helicase conserved C-terminal domain AMJAP_1042 PF18339 RapA N-terminal Tudor like domain 1 AMJAP_1042 PF00176 SNF2 family N-terminal domain AMJAP_1042 PF12137 RNA polymerase recycling family C-terminal AMJAP_1043 PF00270 DEAD/DEAH box helicase AMJAP_1043 PF00271 Helicase conserved C-terminal domain AMJAP_1044 PF00034 Cytochrome c AMJAP_1045 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1045 PF00563 EAL domain AMJAP_1045 PF03707 Bacterial signalling protein N terminal repeat AMJAP_1047 PF04205 FMN-binding domain AMJAP_1047 PF12801 4Fe-4S binding domain AMJAP_1048 PF18764 Nitrous oxide reductase propeller repeat AMJAP_1048 PF18793 Nitrous oxide reductase propeller repeat 2 AMJAP_1049 PF05048 Periplasmic copper-binding protein (NosD) AMJAP_1050 PF00005 ABC transporter AMJAP_1051 PF12679 ABC-2 family transporter protein AMJAP_1052 PF05573 NosL AMJAP_1055 PF00005 ABC transporter AMJAP_1055 PF12848 ABC transporter AMJAP_1057 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMJAP_1059 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1059 PF08448 PAS fold AMJAP_1061 PF00520 Ion transport protein AMJAP_1061 PF00027 Cyclic nucleotide-binding domain AMJAP_1066 PF04989 Cephalosporin hydroxylase AMJAP_1068 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1070 PF12169 DNA polymerase III subunits gamma and tau domain III AMJAP_1070 PF12170 DNA polymerase III tau subunit V interacting with alpha AMJAP_1070 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMJAP_1071 PF02575 YbaB/EbfC DNA-binding family AMJAP_1072 PF13662 Toprim domain AMJAP_1072 PF02132 RecR protein AMJAP_1073 PF01612 3'-5' exonuclease AMJAP_1073 PF00570 HRDC domain AMJAP_1074 PF05166 YcgL domain AMJAP_1075 PF03692 Putative zinc- or iron-chelating domain AMJAP_1078 PF17804 Tail specific protease N-terminal domain AMJAP_1078 PF03572 Peptidase family S41 AMJAP_1078 PF11818 C-terminal domain of tail specific protease (DUF3340) AMJAP_1078 PF00595 PDZ domain AMJAP_1079 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMJAP_1079 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMJAP_1080 PF02127 Aminopeptidase I zinc metalloprotease (M18) AMJAP_1081 PF00849 RNA pseudouridylate synthase AMJAP_1081 PF01479 S4 domain AMJAP_1082 PF07517 SecA DEAD-like domain AMJAP_1082 PF07516 SecA Wing and Scaffold domain AMJAP_1082 PF01043 SecA preprotein cross-linking domain AMJAP_1082 PF02810 SEC-C motif AMJAP_1087 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_1088 PF00005 ABC transporter AMJAP_1088 PF03459 TOBE domain AMJAP_1089 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_1090 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_1092 PF00005 ABC transporter AMJAP_1092 PF08402 TOBE domain AMJAP_1093 PF08206 Ribonuclease B OB domain AMJAP_1093 PF00575 S1 RNA binding domain AMJAP_1093 PF08461 Ribonuclease R winged-helix domain AMJAP_1093 PF17876 Cold shock domain AMJAP_1093 PF00773 RNB domain AMJAP_1094 PF01590 GAF domain AMJAP_1094 PF00563 EAL domain AMJAP_1094 PF00360 Phytochrome region AMJAP_1094 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1095 PF01494 FAD binding domain AMJAP_1095 PF07976 Phenol hydroxylase, C-terminal dimerisation domain AMJAP_1097 PF04116 Fatty acid hydroxylase superfamily AMJAP_1103 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AMJAP_1103 PF18381 YcaO cyclodehydratase C-terminal domain AMJAP_1110 PF01722 BolA-like protein AMJAP_1112 PF00664 ABC transporter transmembrane region AMJAP_1112 PF00005 ABC transporter AMJAP_1113 PF05433 Glycine zipper 2TM domain AMJAP_1115 PF00570 HRDC domain AMJAP_1115 PF00271 Helicase conserved C-terminal domain AMJAP_1115 PF00270 DEAD/DEAH box helicase AMJAP_1115 PF09382 RQC domain AMJAP_1115 PF16124 RecQ zinc-binding AMJAP_1121 PF00664 ABC transporter transmembrane region AMJAP_1121 PF00005 ABC transporter AMJAP_1121 PF03412 Peptidase C39 family AMJAP_1122 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMJAP_1122 PF00529 HlyD membrane-fusion protein of T1SS AMJAP_1123 PF02321 Outer membrane efflux protein AMJAP_1124 PF01171 PP-loop family AMJAP_1126 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_1128 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMJAP_1134 PF02872 5'-nucleotidase, C-terminal domain AMJAP_1134 PF00149 Calcineurin-like phosphoesterase AMJAP_1136 PF04315 Elongation factor P hydroxylase AMJAP_1138 PF02630 SCO1/SenC AMJAP_1140 PF01966 HD domain AMJAP_1141 PF01253 Translation initiation factor SUI1 AMJAP_1145 PF01636 Phosphotransferase enzyme family AMJAP_1146 PF01928 CYTH domain AMJAP_1147 PF01588 Putative tRNA binding domain AMJAP_1147 PF09334 tRNA synthetases class I (M) AMJAP_1149 PF05958 tRNA (Uracil-5-)-methyltransferase AMJAP_1150 PF01553 Acyltransferase AMJAP_1150 PF00501 AMP-binding enzyme AMJAP_1151 PF03976 Polyphosphate kinase 2 (PPK2) AMJAP_1154 PF00005 ABC transporter AMJAP_1157 PF10609 NUBPL iron-transfer P-loop NTPase AMJAP_1158 PF00692 dUTPase AMJAP_1161 PF13188 PAS domain AMJAP_1161 PF00563 EAL domain AMJAP_1161 PF03707 Bacterial signalling protein N terminal repeat AMJAP_1161 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1163 PF02321 Outer membrane efflux protein AMJAP_1164 PF00873 AcrB/AcrD/AcrF family AMJAP_1165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMJAP_1166 PF16925 Tetracyclin repressor-like, C-terminal domain AMJAP_1166 PF00440 Bacterial regulatory proteins, tetR family AMJAP_1167 PF00155 Aminotransferase class I and II AMJAP_1168 PF00271 Helicase conserved C-terminal domain AMJAP_1168 PF04851 Type III restriction enzyme, res subunit AMJAP_1168 PF02151 UvrB/uvrC motif AMJAP_1168 PF12344 Ultra-violet resistance protein B AMJAP_1168 PF17757 UvrB interaction domain AMJAP_1169 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_1169 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJAP_1169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_1171 PF00072 Response regulator receiver domain AMJAP_1172 PF00072 Response regulator receiver domain AMJAP_1172 PF00158 Sigma-54 interaction domain AMJAP_1172 PF02954 Bacterial regulatory protein, Fis family AMJAP_1173 PF00072 Response regulator receiver domain AMJAP_1173 PF02954 Bacterial regulatory protein, Fis family AMJAP_1173 PF00158 Sigma-54 interaction domain AMJAP_1178 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMJAP_1178 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMJAP_1179 PF02311 AraC-like ligand binding domain AMJAP_1179 PF12833 Helix-turn-helix domain AMJAP_1181 PF12833 Helix-turn-helix domain AMJAP_1183 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMJAP_1185 PF04909 Amidohydrolase AMJAP_1186 PF04303 PrpF protein AMJAP_1187 PF03737 Aldolase/RraA AMJAP_1188 PF04909 Amidohydrolase AMJAP_1189 PF03466 LysR substrate binding domain AMJAP_1189 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1190 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMJAP_1191 PF00248 Aldo/keto reductase family AMJAP_1192 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJAP_1194 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_1197 PF01494 FAD binding domain AMJAP_1198 PF03466 LysR substrate binding domain AMJAP_1198 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1203 PF02798 Glutathione S-transferase, N-terminal domain AMJAP_1204 PF03466 LysR substrate binding domain AMJAP_1204 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1205 PF00106 short chain dehydrogenase AMJAP_1206 PF01323 DSBA-like thioredoxin domain AMJAP_1207 PF03334 Na+/H+ antiporter subunit AMJAP_1208 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AMJAP_1209 PF01899 Na+/H+ ion antiporter subunit AMJAP_1210 PF00361 Proton-conducting membrane transporter AMJAP_1211 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMJAP_1212 PF13244 Domain of unknown function (DUF4040) AMJAP_1212 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMJAP_1212 PF00361 Proton-conducting membrane transporter AMJAP_1212 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AMJAP_1214 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1219 PF09308 LuxQ, periplasmic AMJAP_1219 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_1219 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_1219 PF00072 Response regulator receiver domain AMJAP_1220 PF00563 EAL domain AMJAP_1220 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1220 PF03707 Bacterial signalling protein N terminal repeat AMJAP_1223 PF12706 Beta-lactamase superfamily domain AMJAP_1224 PF00211 Adenylate and Guanylate cyclase catalytic domain AMJAP_1225 PF01966 HD domain AMJAP_1228 PF12833 Helix-turn-helix domain AMJAP_1228 PF01965 DJ-1/PfpI family AMJAP_1229 PF02423 Ornithine cyclodeaminase/mu-crystallin family AMJAP_1230 PF01266 FAD dependent oxidoreductase AMJAP_1239 PF00892 EamA-like transporter family AMJAP_1240 PF01037 Lrp/AsnC ligand binding domain AMJAP_1241 PF05088 Bacterial NAD-glutamate dehydrogenase AMJAP_1242 PF00474 Sodium:solute symporter family AMJAP_1243 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMJAP_1243 PF01619 Proline dehydrogenase AMJAP_1243 PF14850 DNA-binding domain of Proline dehydrogenase AMJAP_1243 PF00171 Aldehyde dehydrogenase family AMJAP_1244 PF03707 Bacterial signalling protein N terminal repeat AMJAP_1244 PF00563 EAL domain AMJAP_1244 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1246 PF01022 Bacterial regulatory protein, arsR family AMJAP_1249 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMJAP_1249 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMJAP_1252 PF04226 Transglycosylase associated protein AMJAP_1254 PF07308 Protein of unknown function (DUF1456) AMJAP_1257 PF02567 Phenazine biosynthesis-like protein AMJAP_1258 PF02311 AraC-like ligand binding domain AMJAP_1258 PF12833 Helix-turn-helix domain AMJAP_1261 PF07694 5TMR of 5TMR-LYT AMJAP_1261 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1264 PF00392 Bacterial regulatory proteins, gntR family AMJAP_1264 PF07729 FCD domain AMJAP_1265 PF08943 CsiD AMJAP_1266 PF01266 FAD dependent oxidoreductase AMJAP_1267 PF03466 LysR substrate binding domain AMJAP_1267 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1268 PF03401 Tripartite tricarboxylate transporter family receptor AMJAP_1269 PF01970 Tripartite tricarboxylate transporter TctA family AMJAP_1271 PF01042 Endoribonuclease L-PSP AMJAP_1272 PF01266 FAD dependent oxidoreductase AMJAP_1274 PF00892 EamA-like transporter family AMJAP_1275 PF00551 Formyl transferase AMJAP_1277 PF00689 Cation transporting ATPase, C-terminus AMJAP_1277 PF00690 Cation transporter/ATPase, N-terminus AMJAP_1279 PF00877 NlpC/P60 family AMJAP_1281 PF04231 Endonuclease I AMJAP_1282 PF11849 Domain of unknown function (DUF3369) AMJAP_1283 PF00563 EAL domain AMJAP_1283 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1283 PF03707 Bacterial signalling protein N terminal repeat AMJAP_1284 PF00664 ABC transporter transmembrane region AMJAP_1284 PF00005 ABC transporter AMJAP_1285 PF03649 Uncharacterised protein family (UPF0014) AMJAP_1286 PF00892 EamA-like transporter family AMJAP_1287 PF01810 LysE type translocator AMJAP_1288 PF03060 Nitronate monooxygenase AMJAP_1289 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMJAP_1290 PF17863 AAA lid domain AMJAP_1290 PF07726 ATPase family associated with various cellular activities (AAA) AMJAP_1292 PF01841 Transglutaminase-like superfamily AMJAP_1292 PF13559 Domain of unknown function (DUF4129) AMJAP_1292 PF11992 Domain of unknown function (DUF3488) AMJAP_1294 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJAP_1294 PF12729 Four helix bundle sensory module for signal transduction AMJAP_1294 PF00672 HAMP domain AMJAP_1297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_1297 PF00072 Response regulator receiver domain AMJAP_1297 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_1297 PF09456 RcsC Alpha-Beta-Loop (ABL) AMJAP_1298 PF00072 Response regulator receiver domain AMJAP_1298 PF00196 Bacterial regulatory proteins, luxR family AMJAP_1300 PF03707 Bacterial signalling protein N terminal repeat AMJAP_1300 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1300 PF00563 EAL domain AMJAP_1302 PF00005 ABC transporter AMJAP_1307 PF00486 Transcriptional regulatory protein, C terminal AMJAP_1307 PF00072 Response regulator receiver domain AMJAP_1308 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_1308 PF00672 HAMP domain AMJAP_1308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_1309 PF06629 MltA-interacting protein MipA AMJAP_1311 PF00873 AcrB/AcrD/AcrF family AMJAP_1312 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMJAP_1317 PF01011 PQQ enzyme repeat AMJAP_1317 PF13360 PQQ-like domain AMJAP_1318 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMJAP_1320 PF07694 5TMR of 5TMR-LYT AMJAP_1320 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1321 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1321 PF03466 LysR substrate binding domain AMJAP_1322 PF01810 LysE type translocator AMJAP_1323 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJAP_1323 PF08447 PAS fold AMJAP_1324 PF00171 Aldehyde dehydrogenase family AMJAP_1325 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1325 PF00563 EAL domain AMJAP_1325 PF13426 PAS domain AMJAP_1327 PF00472 RF-1 domain AMJAP_1329 PF12706 Beta-lactamase superfamily domain AMJAP_1330 PF03070 TENA/THI-4/PQQC family AMJAP_1331 PF05402 Coenzyme PQQ synthesis protein D (PqqD) AMJAP_1332 PF04055 Radical SAM superfamily AMJAP_1332 PF13186 Iron-sulfur cluster-binding domain AMJAP_1333 PF00326 Prolyl oligopeptidase family AMJAP_1334 PF03831 PhnA domain AMJAP_1334 PF08274 PhnA Zinc-Ribbon AMJAP_1335 PF00589 Phage integrase family AMJAP_1335 PF13495 Phage integrase, N-terminal SAM-like domain AMJAP_1342 PF00561 alpha/beta hydrolase fold AMJAP_1344 PF03475 3-alpha domain AMJAP_1344 PF03473 MOSC domain AMJAP_1350 PF02036 SCP-2 sterol transfer family AMJAP_1351 PF01136 Peptidase family U32 AMJAP_1352 PF01136 Peptidase family U32 AMJAP_1354 PF01613 Flavin reductase like domain AMJAP_1363 PF07726 ATPase family associated with various cellular activities (AAA) AMJAP_1363 PF17863 AAA lid domain AMJAP_1366 PF00892 EamA-like transporter family AMJAP_1369 PF00677 Lumazine binding domain AMJAP_1370 PF01370 NAD dependent epimerase/dehydratase family AMJAP_1370 PF08338 Domain of unknown function (DUF1731) AMJAP_1372 PF05088 Bacterial NAD-glutamate dehydrogenase AMJAP_1374 PF01180 Dihydroorotate dehydrogenase AMJAP_1375 PF04957 Ribosome modulation factor AMJAP_1376 PF02926 THUMP domain AMJAP_1376 PF10672 S-adenosylmethionine-dependent methyltransferase AMJAP_1376 PF01170 Putative RNA methylase family UPF0020 AMJAP_1377 PF00909 Ammonium Transporter Family AMJAP_1378 PF00285 Citrate synthase, C-terminal domain AMJAP_1379 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMJAP_1380 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMJAP_1381 PF02910 Fumarate reductase flavoprotein C-term AMJAP_1381 PF00890 FAD binding domain AMJAP_1382 PF13085 2Fe-2S iron-sulfur cluster binding domain AMJAP_1383 PF16870 2-oxoglutarate dehydrogenase C-terminal AMJAP_1383 PF02779 Transketolase, pyrimidine binding domain AMJAP_1383 PF16078 2-oxoglutarate dehydrogenase N-terminus AMJAP_1383 PF00676 Dehydrogenase E1 component AMJAP_1384 PF02817 e3 binding domain AMJAP_1384 PF00364 Biotin-requiring enzyme AMJAP_1384 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMJAP_1385 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJAP_1385 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_1386 PF08442 ATP-grasp domain AMJAP_1386 PF00549 CoA-ligase AMJAP_1387 PF00549 CoA-ligase AMJAP_1387 PF02629 CoA binding domain AMJAP_1393 PF01810 LysE type translocator AMJAP_1395 PF00271 Helicase conserved C-terminal domain AMJAP_1395 PF00270 DEAD/DEAH box helicase AMJAP_1395 PF03880 DbpA RNA binding domain AMJAP_1395 PF12343 Cold shock protein DEAD box A AMJAP_1397 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMJAP_1398 PF07885 Ion channel AMJAP_1402 PF00551 Formyl transferase AMJAP_1403 PF02769 AIR synthase related protein, C-terminal domain AMJAP_1403 PF00586 AIR synthase related protein, N-terminal domain AMJAP_1405 PF01594 AI-2E family transporter AMJAP_1406 PF00308 Bacterial dnaA protein AMJAP_1408 PF00849 RNA pseudouridylate synthase AMJAP_1410 PF00899 ThiF family AMJAP_1411 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1412 PF00266 Aminotransferase class-V AMJAP_1414 PF03358 NADPH-dependent FMN reductase AMJAP_1415 PF03960 ArsC family AMJAP_1416 PF03631 Virulence factor BrkB AMJAP_1417 PF00708 Acylphosphatase AMJAP_1419 PF03992 Antibiotic biosynthesis monooxygenase AMJAP_1421 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMJAP_1421 PF03129 Anticodon binding domain AMJAP_1421 PF04073 Aminoacyl-tRNA editing domain AMJAP_1425 PF05552 Conserved TM helix AMJAP_1425 PF00924 Mechanosensitive ion channel AMJAP_1427 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJAP_1427 PF02770 Acyl-CoA dehydrogenase, middle domain AMJAP_1427 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJAP_1428 PF02515 CoA-transferase family III AMJAP_1429 PF13193 AMP-binding enzyme C-terminal domain AMJAP_1429 PF00501 AMP-binding enzyme AMJAP_1434 PF00034 Cytochrome c AMJAP_1438 PF00196 Bacterial regulatory proteins, luxR family AMJAP_1438 PF00072 Response regulator receiver domain AMJAP_1439 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_1439 PF00989 PAS fold AMJAP_1439 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_1440 PF00501 AMP-binding enzyme AMJAP_1440 PF13193 AMP-binding enzyme C-terminal domain AMJAP_1442 PF01435 Peptidase family M48 AMJAP_1443 PF01206 Sulfurtransferase TusA AMJAP_1444 PF01594 AI-2E family transporter AMJAP_1445 PF00578 AhpC/TSA family AMJAP_1446 PF00701 Dihydrodipicolinate synthetase family AMJAP_1448 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJAP_1448 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJAP_1449 PF00849 RNA pseudouridylate synthase AMJAP_1450 PF05958 tRNA (Uracil-5-)-methyltransferase AMJAP_1451 PF00591 Glycosyl transferase family, a/b domain AMJAP_1451 PF02885 Glycosyl transferase family, helical bundle domain AMJAP_1452 PF00999 Sodium/hydrogen exchanger family AMJAP_1452 PF02254 TrkA-N domain AMJAP_1453 PF01106 NifU-like domain AMJAP_1453 PF01521 Iron-sulphur cluster biosynthesis AMJAP_1454 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMJAP_1454 PF05362 Lon protease (S16) C-terminal proteolytic domain AMJAP_1454 PF00004 ATPase family associated with various cellular activities (AAA) AMJAP_1455 PF00216 Bacterial DNA-binding protein AMJAP_1456 PF09312 SurA N-terminal domain AMJAP_1456 PF00639 PPIC-type PPIASE domain AMJAP_1462 PF00005 ABC transporter AMJAP_1462 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMJAP_1463 PF12911 N-terminal TM domain of oligopeptide transport permease C AMJAP_1463 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_1464 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_1465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMJAP_1467 PF01464 Transglycosylase SLT domain AMJAP_1467 PF01476 LysM domain AMJAP_1468 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMJAP_1468 PF00753 Metallo-beta-lactamase superfamily AMJAP_1469 PF01209 ubiE/COQ5 methyltransferase family AMJAP_1470 PF00075 RNase H AMJAP_1471 PF00929 Exonuclease AMJAP_1472 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AMJAP_1473 PF09297 NADH pyrophosphatase zinc ribbon domain AMJAP_1473 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMJAP_1473 PF00293 NUDIX domain AMJAP_1475 PF01343 Peptidase family S49 AMJAP_1475 PF08496 Peptidase family S49 N-terminal AMJAP_1477 PF03734 L,D-transpeptidase catalytic domain AMJAP_1477 PF17969 L,D-transpeptidase C-terminal domain AMJAP_1478 PF00933 Glycosyl hydrolase family 3 N terminal domain AMJAP_1479 PF00924 Mechanosensitive ion channel AMJAP_1482 PF03461 TRCF domain AMJAP_1482 PF17757 UvrB interaction domain AMJAP_1482 PF00271 Helicase conserved C-terminal domain AMJAP_1482 PF02559 CarD-like/TRCF domain AMJAP_1482 PF00270 DEAD/DEAH box helicase AMJAP_1483 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMJAP_1483 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMJAP_1484 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AMJAP_1484 PF11973 NQRA C-terminal domain AMJAP_1485 PF03116 NQR2, RnfD, RnfE family AMJAP_1486 PF04205 FMN-binding domain AMJAP_1487 PF02508 Rnf-Nqr subunit, membrane protein AMJAP_1488 PF02508 Rnf-Nqr subunit, membrane protein AMJAP_1489 PF00970 Oxidoreductase FAD-binding domain AMJAP_1489 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJAP_1489 PF00175 Oxidoreductase NAD-binding domain AMJAP_1490 PF02424 ApbE family AMJAP_1492 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_1492 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJAP_1496 PF12704 MacB-like periplasmic core domain AMJAP_1496 PF02687 FtsX-like permease family AMJAP_1497 PF00005 ABC transporter AMJAP_1499 PF00753 Metallo-beta-lactamase superfamily AMJAP_1499 PF03772 Competence protein AMJAP_1500 PF01618 MotA/TolQ/ExbB proton channel family AMJAP_1501 PF02472 Biopolymer transport protein ExbD/TolR AMJAP_1502 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMJAP_1503 PF03966 Trm112p-like protein AMJAP_1504 PF02348 Cytidylyltransferase AMJAP_1508 PF01451 Low molecular weight phosphotyrosine protein phosphatase AMJAP_1509 PF01565 FAD binding domain AMJAP_1509 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMJAP_1510 PF12111 Polyribonucleotide phosphorylase C terminal AMJAP_1510 PF10150 Ribonuclease E/G family AMJAP_1510 PF00575 S1 RNA binding domain AMJAP_1511 PF00849 RNA pseudouridylate synthase AMJAP_1511 PF01479 S4 domain AMJAP_1513 PF03466 LysR substrate binding domain AMJAP_1513 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1516 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_1517 PF00582 Universal stress protein family AMJAP_1518 PF03466 LysR substrate binding domain AMJAP_1518 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1519 PF08668 HDOD domain AMJAP_1519 PF00563 EAL domain AMJAP_1520 PF01926 50S ribosome-binding GTPase AMJAP_1525 PF03264 NapC/NirT cytochrome c family, N-terminal region AMJAP_1526 PF00012 Hsp70 protein AMJAP_1527 PF03466 LysR substrate binding domain AMJAP_1527 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1530 PF03334 Na+/H+ antiporter subunit AMJAP_1532 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMJAP_1533 PF00361 Proton-conducting membrane transporter AMJAP_1534 PF00361 Proton-conducting membrane transporter AMJAP_1536 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AMJAP_1536 PF13244 Domain of unknown function (DUF4040) AMJAP_1536 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMJAP_1536 PF00361 Proton-conducting membrane transporter AMJAP_1538 PF18381 YcaO cyclodehydratase C-terminal domain AMJAP_1538 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AMJAP_1540 PF03928 Haem-degrading AMJAP_1542 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJAP_1542 PF07498 Rho termination factor, N-terminal domain AMJAP_1542 PF07497 Rho termination factor, RNA-binding domain AMJAP_1545 PF00271 Helicase conserved C-terminal domain AMJAP_1545 PF00270 DEAD/DEAH box helicase AMJAP_1548 PF04960 Glutaminase AMJAP_1551 PF12437 Glutamine synthetase type III N terminal AMJAP_1551 PF18318 Glutamine synthetase C-terminal domain AMJAP_1551 PF00120 Glutamine synthetase, catalytic domain AMJAP_1552 PF03600 Citrate transporter AMJAP_1553 PF00171 Aldehyde dehydrogenase family AMJAP_1556 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_1556 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJAP_1556 PF00403 Heavy-metal-associated domain AMJAP_1557 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMJAP_1557 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMJAP_1558 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMJAP_1558 PF05698 Bacterial trigger factor protein (TF) C-terminus AMJAP_1558 PF05697 Bacterial trigger factor protein (TF) AMJAP_1559 PF00574 Clp protease AMJAP_1560 PF10431 C-terminal, D2-small domain, of ClpB protein AMJAP_1560 PF07724 AAA domain (Cdc48 subfamily) AMJAP_1560 PF06689 ClpX C4-type zinc finger AMJAP_1561 PF01709 Transcriptional regulator AMJAP_1563 PF05230 MASE2 domain AMJAP_1563 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1565 PF04828 Glutathione-dependent formaldehyde-activating enzyme AMJAP_1574 PF01259 SAICAR synthetase AMJAP_1575 PF07690 Major Facilitator Superfamily AMJAP_1576 PF03618 Kinase/pyrophosphorylase AMJAP_1577 PF00391 PEP-utilising enzyme, mobile domain AMJAP_1577 PF02896 PEP-utilising enzyme, TIM barrel domain AMJAP_1577 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMJAP_1578 PF01479 S4 domain AMJAP_1578 PF00849 RNA pseudouridylate synthase AMJAP_1579 PF00535 Glycosyl transferase family 2 AMJAP_1587 PF01863 Protein of unknown function DUF45 AMJAP_1589 PF03061 Thioesterase superfamily AMJAP_1591 PF00155 Aminotransferase class I and II AMJAP_1591 PF00392 Bacterial regulatory proteins, gntR family AMJAP_1592 PF12833 Helix-turn-helix domain AMJAP_1595 PF02080 TrkA-C domain AMJAP_1595 PF03600 Citrate transporter AMJAP_1596 PF03061 Thioesterase superfamily AMJAP_1597 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1597 PF03466 LysR substrate binding domain AMJAP_1598 PF13183 4Fe-4S dicluster domain AMJAP_1598 PF02913 FAD linked oxidases, C-terminal domain AMJAP_1598 PF01565 FAD binding domain AMJAP_1600 PF03737 Aldolase/RraA AMJAP_1601 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMJAP_1601 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_1601 PF09242 Flavocytochrome c sulphide dehydrogenase, flavin-binding AMJAP_1603 PF13419 Haloacid dehalogenase-like hydrolase AMJAP_1604 PF01343 Peptidase family S49 AMJAP_1606 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family AMJAP_1607 PF05708 Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family AMJAP_1608 PF02545 Maf-like protein AMJAP_1609 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMJAP_1610 PF01783 Ribosomal L32p protein family AMJAP_1611 PF02504 Fatty acid synthesis protein AMJAP_1612 PF00698 Acyl transferase domain AMJAP_1614 PF00550 Phosphopantetheine attachment site AMJAP_1615 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJAP_1615 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJAP_1616 PF01063 Amino-transferase class IV AMJAP_1617 PF02618 YceG-like family AMJAP_1618 PF02223 Thymidylate kinase AMJAP_1619 PF09115 DNA polymerase III, delta subunit, C terminal AMJAP_1621 PF01026 TatD related DNase AMJAP_1623 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMJAP_1623 PF00056 lactate/malate dehydrogenase, NAD binding domain AMJAP_1624 PF01894 Uncharacterised protein family UPF0047 AMJAP_1625 PF01584 CheW-like domain AMJAP_1626 PF01261 Xylose isomerase-like TIM barrel AMJAP_1627 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJAP_1627 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJAP_1628 PF04358 DsrC like protein AMJAP_1629 PF04077 DsrH like protein AMJAP_1630 PF02635 DsrE/DsrF-like family AMJAP_1631 PF02635 DsrE/DsrF-like family AMJAP_1632 PF01027 Inhibitor of apoptosis-promoting Bax1 AMJAP_1633 PF00849 RNA pseudouridylate synthase AMJAP_1635 PF01048 Phosphorylase superfamily AMJAP_1636 PF00266 Aminotransferase class-V AMJAP_1637 PF00578 AhpC/TSA family AMJAP_1638 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJAP_1638 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJAP_1641 PF01541 GIY-YIG catalytic domain AMJAP_1641 PF02151 UvrB/uvrC motif AMJAP_1641 PF08459 UvrC Helix-hairpin-helix N-terminal AMJAP_1642 PF01066 CDP-alcohol phosphatidyltransferase AMJAP_1643 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMJAP_1643 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMJAP_1646 PF00196 Bacterial regulatory proteins, luxR family AMJAP_1646 PF00072 Response regulator receiver domain AMJAP_1658 PF13193 AMP-binding enzyme C-terminal domain AMJAP_1658 PF00501 AMP-binding enzyme AMJAP_1659 PF00313 'Cold-shock' DNA-binding domain AMJAP_1660 PF00989 PAS fold AMJAP_1660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_1660 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_1662 PF01738 Dienelactone hydrolase family AMJAP_1663 PF07311 Dodecin AMJAP_1664 PF00717 Peptidase S24-like AMJAP_1665 PF13438 Domain of unknown function (DUF4113) AMJAP_1665 PF00817 impB/mucB/samB family AMJAP_1665 PF11799 impB/mucB/samB family C-terminal domain AMJAP_1665 PF11798 IMS family HHH motif AMJAP_1667 PF02163 Peptidase family M50 AMJAP_1667 PF17820 PDZ domain AMJAP_1668 PF00563 EAL domain AMJAP_1668 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1668 PF03707 Bacterial signalling protein N terminal repeat AMJAP_1669 PF00106 short chain dehydrogenase AMJAP_1672 PF00199 Catalase AMJAP_1672 PF06628 Catalase-related immune-responsive AMJAP_1674 PF16177 Acetyl-coenzyme A synthetase N-terminus AMJAP_1674 PF00501 AMP-binding enzyme AMJAP_1674 PF13193 AMP-binding enzyme C-terminal domain AMJAP_1675 PF02261 Aspartate decarboxylase AMJAP_1676 PF00809 Pterin binding enzyme AMJAP_1676 PF02607 B12 binding domain AMJAP_1676 PF02310 B12 binding domain AMJAP_1676 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMJAP_1676 PF02574 Homocysteine S-methyltransferase AMJAP_1679 PF00912 Transglycosylase AMJAP_1682 PF05193 Peptidase M16 inactive domain AMJAP_1682 PF00675 Insulinase (Peptidase family M16) AMJAP_1682 PF08367 Peptidase M16C associated AMJAP_1684 PF01494 FAD binding domain AMJAP_1685 PF08668 HDOD domain AMJAP_1685 PF00563 EAL domain AMJAP_1686 PF02403 Seryl-tRNA synthetase N-terminal domain AMJAP_1686 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMJAP_1687 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMJAP_1688 PF12002 MgsA AAA+ ATPase C terminal AMJAP_1688 PF16193 AAA C-terminal domain AMJAP_1688 PF00004 ATPase family associated with various cellular activities (AAA) AMJAP_1689 PF03548 Outer membrane lipoprotein carrier protein LolA AMJAP_1690 PF09397 Ftsk gamma domain AMJAP_1690 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMJAP_1690 PF17854 FtsK alpha domain AMJAP_1690 PF01580 FtsK/SpoIIIE family AMJAP_1691 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_1692 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMJAP_1693 PF04376 Arginine-tRNA-protein transferase, N terminus AMJAP_1693 PF04377 Arginine-tRNA-protein transferase, C terminus AMJAP_1694 PF01176 Translation initiation factor 1A / IF-1 AMJAP_1695 PF17871 AAA lid domain AMJAP_1695 PF10431 C-terminal, D2-small domain, of ClpB protein AMJAP_1695 PF02861 Clp amino terminal domain, pathogenicity island component AMJAP_1695 PF00004 ATPase family associated with various cellular activities (AAA) AMJAP_1695 PF07724 AAA domain (Cdc48 subfamily) AMJAP_1696 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMJAP_1697 PF00313 'Cold-shock' DNA-binding domain AMJAP_1698 PF00849 RNA pseudouridylate synthase AMJAP_1699 PF02391 MoaE protein AMJAP_1700 PF00293 NUDIX domain AMJAP_1702 PF04356 Protein of unknown function (DUF489) AMJAP_1703 PF00206 Lyase AMJAP_1703 PF08328 Adenylosuccinate lyase C-terminal AMJAP_1704 PF00561 alpha/beta hydrolase fold AMJAP_1705 PF00588 SpoU rRNA Methylase family AMJAP_1706 PF08007 Cupin superfamily protein AMJAP_1707 PF03466 LysR substrate binding domain AMJAP_1707 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1708 PF00463 Isocitrate lyase family AMJAP_1710 PF00463 Isocitrate lyase family AMJAP_1711 PF06779 Uncharacterised MFS-type transporter YbfB AMJAP_1712 PF03922 OmpW family AMJAP_1714 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_1715 PF00664 ABC transporter transmembrane region AMJAP_1715 PF00005 ABC transporter AMJAP_1719 PF01406 tRNA synthetases class I (C) catalytic domain AMJAP_1719 PF09190 DALR domain AMJAP_1720 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJAP_1720 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMJAP_1720 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMJAP_1720 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AMJAP_1720 PF10371 Domain of unknown function AMJAP_1722 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMJAP_1722 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMJAP_1723 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMJAP_1724 PF00149 Calcineurin-like phosphoesterase AMJAP_1725 PF14552 Tautomerase enzyme AMJAP_1728 PF00583 Acetyltransferase (GNAT) family AMJAP_1729 PF00999 Sodium/hydrogen exchanger family AMJAP_1729 PF02254 TrkA-N domain AMJAP_1731 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1731 PF03466 LysR substrate binding domain AMJAP_1732 PF08240 Alcohol dehydrogenase GroES-like domain AMJAP_1732 PF00107 Zinc-binding dehydrogenase AMJAP_1735 PF04303 PrpF protein AMJAP_1736 PF00330 Aconitase family (aconitate hydratase) AMJAP_1736 PF00694 Aconitase C-terminal domain AMJAP_1737 PF00285 Citrate synthase, C-terminal domain AMJAP_1739 PF07729 FCD domain AMJAP_1739 PF00392 Bacterial regulatory proteins, gntR family AMJAP_1741 PF04715 Anthranilate synthase component I, N terminal region AMJAP_1741 PF00425 chorismate binding enzyme AMJAP_1745 PF03942 DTW domain AMJAP_1746 PF00563 EAL domain AMJAP_1746 PF00498 FHA domain AMJAP_1746 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1748 PF03591 AzlC protein AMJAP_1752 PF07690 Major Facilitator Superfamily AMJAP_1754 PF03466 LysR substrate binding domain AMJAP_1754 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1755 PF01144 Coenzyme A transferase AMJAP_1756 PF01144 Coenzyme A transferase AMJAP_1757 PF13458 Periplasmic binding protein AMJAP_1758 PF17151 Periplasmic sensor domain AMJAP_1758 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1760 PF02683 Cytochrome C biogenesis protein transmembrane region AMJAP_1760 PF11412 Disulphide bond corrector protein DsbC AMJAP_1761 PF00793 DAHP synthetase I family AMJAP_1762 PF03971 Monomeric isocitrate dehydrogenase AMJAP_1763 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_1765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJAP_1765 PF08447 PAS fold AMJAP_1771 PF11791 Aconitate B N-terminal domain AMJAP_1771 PF06434 Aconitate hydratase 2 N-terminus AMJAP_1771 PF00330 Aconitase family (aconitate hydratase) AMJAP_1772 PF00694 Aconitase C-terminal domain AMJAP_1772 PF00330 Aconitase family (aconitate hydratase) AMJAP_1774 PF13426 PAS domain AMJAP_1774 PF08447 PAS fold AMJAP_1774 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1774 PF08448 PAS fold AMJAP_1774 PF05231 MASE1 AMJAP_1774 PF00563 EAL domain AMJAP_1775 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AMJAP_1776 PF12833 Helix-turn-helix domain AMJAP_1776 PF02311 AraC-like ligand binding domain AMJAP_1777 PF01613 Flavin reductase like domain AMJAP_1779 PF00011 Hsp20/alpha crystallin family AMJAP_1780 PF01661 Macro domain AMJAP_1782 PF01875 Memo-like protein AMJAP_1784 PF01207 Dihydrouridine synthase (Dus) AMJAP_1785 PF01053 Cys/Met metabolism PLP-dependent enzyme AMJAP_1786 PF00156 Phosphoribosyl transferase domain AMJAP_1787 PF02674 Colicin V production protein AMJAP_1789 PF08245 Mur ligase middle domain AMJAP_1790 PF01039 Carboxyl transferase domain AMJAP_1790 PF17848 Acetyl-coA carboxylase zinc finger domain AMJAP_1791 PF00290 Tryptophan synthase alpha chain AMJAP_1792 PF00291 Pyridoxal-phosphate dependent enzyme AMJAP_1793 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMJAP_1794 PF01416 tRNA pseudouridine synthase AMJAP_1796 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMJAP_1796 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMJAP_1797 PF00180 Isocitrate/isopropylmalate dehydrogenase AMJAP_1798 PF00694 Aconitase C-terminal domain AMJAP_1799 PF00330 Aconitase family (aconitate hydratase) AMJAP_1800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1802 PF00561 alpha/beta hydrolase fold AMJAP_1803 PF02675 S-adenosylmethionine decarboxylase AMJAP_1809 PF05233 PHB accumulation regulatory domain AMJAP_1809 PF07879 PHB/PHA accumulation regulator DNA-binding domain AMJAP_1811 PF12832 MFS_1 like family AMJAP_1812 PF17284 Spermidine synthase tetramerisation domain AMJAP_1813 PF01264 Chorismate synthase AMJAP_1814 PF05175 Methyltransferase small domain AMJAP_1816 PF01227 GTP cyclohydrolase I AMJAP_1817 PF01734 Patatin-like phospholipase AMJAP_1822 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMJAP_1822 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMJAP_1823 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMJAP_1824 PF00270 DEAD/DEAH box helicase AMJAP_1824 PF00271 Helicase conserved C-terminal domain AMJAP_1825 PF13307 Helicase C-terminal domain AMJAP_1825 PF06733 DEAD_2 AMJAP_1826 PF00717 Peptidase S24-like AMJAP_1826 PF01726 LexA DNA binding domain AMJAP_1827 PF03846 Cell division inhibitor SulA AMJAP_1830 PF01751 Toprim domain AMJAP_1830 PF01396 Topoisomerase DNA binding C4 zinc finger AMJAP_1830 PF08272 Topoisomerase I zinc-ribbon-like AMJAP_1830 PF01131 DNA topoisomerase AMJAP_1834 PF00582 Universal stress protein family AMJAP_1835 PF16326 ABC transporter C-terminal domain AMJAP_1835 PF00005 ABC transporter AMJAP_1835 PF12848 ABC transporter AMJAP_1836 PF14718 Soluble lytic murein transglycosylase L domain AMJAP_1836 PF01464 Transglycosylase SLT domain AMJAP_1837 PF01026 TatD related DNase AMJAP_1839 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AMJAP_1840 PF01554 MatE AMJAP_1843 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1843 PF10442 FIST C domain AMJAP_1843 PF08495 FIST N domain AMJAP_1843 PF00563 EAL domain AMJAP_1845 PF01206 Sulfurtransferase TusA AMJAP_1847 PF01728 FtsJ-like methyltransferase AMJAP_1847 PF18125 RlmM ferredoxin-like domain AMJAP_1849 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJAP_1852 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMJAP_1852 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMJAP_1853 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMJAP_1853 PF12801 4Fe-4S binding domain AMJAP_1853 PF13746 4Fe-4S dicluster domain AMJAP_1855 PF00403 Heavy-metal-associated domain AMJAP_1858 PF04055 Radical SAM superfamily AMJAP_1858 PF06969 HemN C-terminal domain AMJAP_1859 PF00027 Cyclic nucleotide-binding domain AMJAP_1859 PF13545 Crp-like helix-turn-helix domain AMJAP_1860 PF00156 Phosphoribosyl transferase domain AMJAP_1863 PF04381 Putative exonuclease, RdgC AMJAP_1866 PF01758 Sodium Bile acid symporter family AMJAP_1867 PF01545 Cation efflux family AMJAP_1867 PF16916 Dimerisation domain of Zinc Transporter AMJAP_1868 PF09186 Domain of unknown function (DUF1949) AMJAP_1868 PF01205 Uncharacterized protein family UPF0029 AMJAP_1869 PF00916 Sulfate permease family AMJAP_1869 PF01740 STAS domain AMJAP_1870 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1871 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_1871 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMJAP_1872 PF03372 Endonuclease/Exonuclease/phosphatase family AMJAP_1874 PF11127 Protein of unknown function (DUF2892) AMJAP_1874 PF00581 Rhodanese-like domain AMJAP_1875 PF00072 Response regulator receiver domain AMJAP_1875 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1880 PF01022 Bacterial regulatory protein, arsR family AMJAP_1881 PF13380 CoA binding domain AMJAP_1881 PF00583 Acetyltransferase (GNAT) family AMJAP_1881 PF13607 Succinyl-CoA ligase like flavodoxin domain AMJAP_1886 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMJAP_1886 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMJAP_1886 PF11890 Domain of unknown function (DUF3410) AMJAP_1888 PF00291 Pyridoxal-phosphate dependent enzyme AMJAP_1894 PF01751 Toprim domain AMJAP_1894 PF01131 DNA topoisomerase AMJAP_1898 PF00462 Glutaredoxin AMJAP_1899 PF13538 UvrD-like helicase C-terminal domain AMJAP_1900 PF12705 PD-(D/E)XK nuclease superfamily AMJAP_1900 PF00580 UvrD/REP helicase N-terminal domain AMJAP_1900 PF13361 UvrD-like helicase C-terminal domain AMJAP_1901 PF17946 RecC C-terminal domain AMJAP_1903 PF07690 Major Facilitator Superfamily AMJAP_1906 PF01575 MaoC like domain AMJAP_1907 PF02445 Quinolinate synthetase A protein AMJAP_1908 PF06508 Queuosine biosynthesis protein QueC AMJAP_1910 PF00691 OmpA family AMJAP_1911 PF07676 WD40-like Beta Propeller Repeat AMJAP_1911 PF04052 TolB amino-terminal domain AMJAP_1913 PF02472 Biopolymer transport protein ExbD/TolR AMJAP_1914 PF01618 MotA/TolQ/ExbB proton channel family AMJAP_1916 PF17864 RuvB AAA lid domain AMJAP_1916 PF05491 RuvB C-terminal winged helix domain AMJAP_1916 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMJAP_1917 PF07499 RuvA, C-terminal domain AMJAP_1917 PF01330 RuvA N terminal domain AMJAP_1918 PF03458 UPF0126 domain AMJAP_1919 PF02075 Crossover junction endodeoxyribonuclease RuvC AMJAP_1920 PF01336 OB-fold nucleic acid binding domain AMJAP_1920 PF02938 GAD domain AMJAP_1920 PF00152 tRNA synthetases class II (D, K and N) AMJAP_1926 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1931 PF01433 Peptidase family M1 domain AMJAP_1931 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AMJAP_1931 PF11940 Domain of unknown function (DUF3458) Ig-like fold AMJAP_1933 PF07023 Protein of unknown function (DUF1315) AMJAP_1934 PF01694 Rhomboid family AMJAP_1934 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AMJAP_1935 PF00149 Calcineurin-like phosphoesterase AMJAP_1936 PF01513 ATP-NAD kinase AMJAP_1938 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_1939 PF07348 Syd protein (SUKH-2) AMJAP_1942 PF01641 SelR domain AMJAP_1943 PF00155 Aminotransferase class I and II AMJAP_1945 PF08668 HDOD domain AMJAP_1947 PF10672 S-adenosylmethionine-dependent methyltransferase AMJAP_1947 PF17785 PUA-like domain AMJAP_1948 PF01435 Peptidase family M48 AMJAP_1949 PF08497 Radical SAM N-terminal AMJAP_1949 PF11842 Domain of unknown function (DUF3362) AMJAP_1949 PF04055 Radical SAM superfamily AMJAP_1953 PF07152 YaeQ protein AMJAP_1954 PF03692 Putative zinc- or iron-chelating domain AMJAP_1959 PF00155 Aminotransferase class I and II AMJAP_1961 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_1961 PF03466 LysR substrate binding domain AMJAP_1966 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMJAP_1966 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMJAP_1968 PF00155 Aminotransferase class I and II AMJAP_1968 PF00392 Bacterial regulatory proteins, gntR family AMJAP_1969 PF05971 RNA methyltransferase AMJAP_1972 PF01047 MarR family AMJAP_1973 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMJAP_1974 PF00171 Aldehyde dehydrogenase family AMJAP_1975 PF07690 Major Facilitator Superfamily AMJAP_1978 PF06906 Protein of unknown function (DUF1272) AMJAP_1980 PF05552 Conserved TM helix AMJAP_1980 PF00924 Mechanosensitive ion channel AMJAP_1983 PF00171 Aldehyde dehydrogenase family AMJAP_1984 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJAP_1985 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJAP_1986 PF03328 HpcH/HpaI aldolase/citrate lyase family AMJAP_1987 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJAP_1992 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_1992 PF00183 Hsp90 protein AMJAP_1996 PF17785 PUA-like domain AMJAP_1996 PF10672 S-adenosylmethionine-dependent methyltransferase AMJAP_2000 PF06039 Malate:quinone oxidoreductase (Mqo) AMJAP_2001 PF17200 Single Cache domain 2 AMJAP_2001 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJAP_2001 PF00672 HAMP domain AMJAP_2002 PF07055 Enoyl reductase FAD binding domain AMJAP_2002 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMJAP_2002 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMJAP_2003 PF16199 Radical_SAM C-terminal domain AMJAP_2003 PF04055 Radical SAM superfamily AMJAP_2004 PF07977 FabA-like domain AMJAP_2005 PF16177 Acetyl-coenzyme A synthetase N-terminus AMJAP_2005 PF13193 AMP-binding enzyme C-terminal domain AMJAP_2005 PF00501 AMP-binding enzyme AMJAP_2006 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMJAP_2006 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMJAP_2007 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_2008 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_2009 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJAP_2009 PF02770 Acyl-CoA dehydrogenase, middle domain AMJAP_2009 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJAP_2010 PF00171 Aldehyde dehydrogenase family AMJAP_2012 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AMJAP_2013 PF02311 AraC-like ligand binding domain AMJAP_2013 PF12833 Helix-turn-helix domain AMJAP_2014 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJAP_2015 PF13404 AsnC-type helix-turn-helix domain AMJAP_2015 PF01037 Lrp/AsnC ligand binding domain AMJAP_2016 PF13520 Amino acid permease AMJAP_2019 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMJAP_2020 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMJAP_2022 PF08218 Citrate lyase ligase C-terminal domain AMJAP_2023 PF02803 Thiolase, C-terminal domain AMJAP_2023 PF00108 Thiolase, N-terminal domain AMJAP_2025 PF02653 Branched-chain amino acid transport system / permease component AMJAP_2027 PF00005 ABC transporter AMJAP_2028 PF00005 ABC transporter AMJAP_2028 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJAP_2030 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJAP_2030 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJAP_2030 PF02770 Acyl-CoA dehydrogenase, middle domain AMJAP_2031 PF01039 Carboxyl transferase domain AMJAP_2032 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_2033 PF18140 Propionyl-coenzyme A carboxylase BT domain AMJAP_2033 PF02785 Biotin carboxylase C-terminal domain AMJAP_2033 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJAP_2033 PF00364 Biotin-requiring enzyme AMJAP_2033 PF00289 Biotin carboxylase, N-terminal domain AMJAP_2034 PF00682 HMGL-like AMJAP_2036 PF00501 AMP-binding enzyme AMJAP_2036 PF13193 AMP-binding enzyme C-terminal domain AMJAP_2037 PF01209 ubiE/COQ5 methyltransferase family AMJAP_2038 PF00270 DEAD/DEAH box helicase AMJAP_2038 PF00271 Helicase conserved C-terminal domain AMJAP_2039 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMJAP_2039 PF02558 Ketopantoate reductase PanE/ApbA AMJAP_2041 PF01925 Sulfite exporter TauE/SafE AMJAP_2042 PF00916 Sulfate permease family AMJAP_2042 PF01740 STAS domain AMJAP_2043 PF11734 TilS substrate C-terminal domain AMJAP_2043 PF14437 MafB19-like deaminase AMJAP_2043 PF01171 PP-loop family AMJAP_2044 PF00817 impB/mucB/samB family AMJAP_2044 PF11798 IMS family HHH motif AMJAP_2048 PF00684 DnaJ central domain AMJAP_2048 PF01556 DnaJ C terminal domain AMJAP_2048 PF00226 DnaJ domain AMJAP_2050 PF01557 Fumarylacetoacetate (FAA) hydrolase family AMJAP_2052 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_2052 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_2054 PF00072 Response regulator receiver domain AMJAP_2054 PF00158 Sigma-54 interaction domain AMJAP_2055 PF04073 Aminoacyl-tRNA editing domain AMJAP_2058 PF03466 LysR substrate binding domain AMJAP_2058 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2059 PF00043 Glutathione S-transferase, C-terminal domain AMJAP_2059 PF02798 Glutathione S-transferase, N-terminal domain AMJAP_2060 PF12843 Putative quorum-sensing-regulated virulence factor AMJAP_2062 PF05127 Helicase AMJAP_2062 PF13718 GNAT acetyltransferase 2 AMJAP_2062 PF08351 Domain of unknown function (DUF1726) AMJAP_2062 PF17176 tRNA-binding domain AMJAP_2063 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMJAP_2063 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMJAP_2067 PF00043 Glutathione S-transferase, C-terminal domain AMJAP_2067 PF02798 Glutathione S-transferase, N-terminal domain AMJAP_2069 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMJAP_2071 PF00563 EAL domain AMJAP_2071 PF08668 HDOD domain AMJAP_2073 PF07286 Protein of unknown function (DUF1445) AMJAP_2074 PF03746 LamB/YcsF family AMJAP_2075 PF02682 Carboxyltransferase domain, subdomain C and D AMJAP_2076 PF02626 Carboxyltransferase domain, subdomain A and B AMJAP_2078 PF00291 Pyridoxal-phosphate dependent enzyme AMJAP_2079 PF01037 Lrp/AsnC ligand binding domain AMJAP_2079 PF13404 AsnC-type helix-turn-helix domain AMJAP_2080 PF03466 LysR substrate binding domain AMJAP_2080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2081 PF01063 Amino-transferase class IV AMJAP_2084 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMJAP_2087 PF13649 Methyltransferase domain AMJAP_2089 PF00270 DEAD/DEAH box helicase AMJAP_2089 PF09382 RQC domain AMJAP_2089 PF00271 Helicase conserved C-terminal domain AMJAP_2089 PF00570 HRDC domain AMJAP_2089 PF16124 RecQ zinc-binding AMJAP_2090 PF00202 Aminotransferase class-III AMJAP_2091 PF00171 Aldehyde dehydrogenase family AMJAP_2092 PF03466 LysR substrate binding domain AMJAP_2092 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2093 PF00582 Universal stress protein family AMJAP_2094 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_2096 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJAP_2097 PF03466 LysR substrate binding domain AMJAP_2097 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2098 PF01266 FAD dependent oxidoreductase AMJAP_2099 PF03553 Na+/H+ antiporter family AMJAP_2100 PF00892 EamA-like transporter family AMJAP_2102 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJAP_2104 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMJAP_2104 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_2106 PF01068 ATP dependent DNA ligase domain AMJAP_2106 PF14743 DNA ligase OB-like domain AMJAP_2107 PF00171 Aldehyde dehydrogenase family AMJAP_2108 PF00202 Aminotransferase class-III AMJAP_2109 PF03466 LysR substrate binding domain AMJAP_2109 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2112 PF13409 Glutathione S-transferase, N-terminal domain AMJAP_2115 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_2116 PF00313 'Cold-shock' DNA-binding domain AMJAP_2117 PF00313 'Cold-shock' DNA-binding domain AMJAP_2119 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2119 PF03466 LysR substrate binding domain AMJAP_2120 PF02540 NAD synthase AMJAP_2120 PF00958 GMP synthase C terminal domain AMJAP_2120 PF00117 Glutamine amidotransferase class-I AMJAP_2121 PF00117 Glutamine amidotransferase class-I AMJAP_2121 PF00958 GMP synthase C terminal domain AMJAP_2121 PF02540 NAD synthase AMJAP_2122 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_2123 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_2124 PF08402 TOBE domain AMJAP_2124 PF00005 ABC transporter AMJAP_2125 PF13416 Bacterial extracellular solute-binding protein AMJAP_2126 PF00120 Glutamine synthetase, catalytic domain AMJAP_2128 PF00202 Aminotransferase class-III AMJAP_2131 PF00171 Aldehyde dehydrogenase family AMJAP_2133 PF01810 LysE type translocator AMJAP_2134 PF00072 Response regulator receiver domain AMJAP_2136 PF00155 Aminotransferase class I and II AMJAP_2136 PF00392 Bacterial regulatory proteins, gntR family AMJAP_2137 PF00491 Arginase family AMJAP_2138 PF03466 LysR substrate binding domain AMJAP_2138 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2139 PF00893 Small Multidrug Resistance protein AMJAP_2144 PF00072 Response regulator receiver domain AMJAP_2144 PF00196 Bacterial regulatory proteins, luxR family AMJAP_2146 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_2148 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJAP_2149 PF01515 Phosphate acetyl/butaryl transferase AMJAP_2149 PF07085 DRTGG domain AMJAP_2150 PF08349 Protein of unknown function (DUF1722) AMJAP_2151 PF00875 DNA photolyase AMJAP_2151 PF03441 FAD binding domain of DNA photolyase AMJAP_2152 PF01471 Putative peptidoglycan binding domain AMJAP_2152 PF13401 AAA domain AMJAP_2155 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_2162 PF00437 Type II/IV secretion system protein AMJAP_2162 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMJAP_2163 PF00482 Type II secretion system (T2SS), protein F AMJAP_2164 PF08334 Type II secretion system (T2SS), protein G AMJAP_2164 PF07963 Prokaryotic N-terminal methylation motif AMJAP_2168 PF03934 Type II secretion system (T2SS), protein K AMJAP_2169 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_2169 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_2169 PF08447 PAS fold AMJAP_2169 PF00989 PAS fold AMJAP_2170 PF02954 Bacterial regulatory protein, Fis family AMJAP_2170 PF00072 Response regulator receiver domain AMJAP_2170 PF00158 Sigma-54 interaction domain AMJAP_2171 PF00989 PAS fold AMJAP_2171 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_2171 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_2173 PF02630 SCO1/SenC AMJAP_2180 PF00082 Subtilase family AMJAP_2180 PF05922 Peptidase inhibitor I9 AMJAP_2184 PF00263 Bacterial type II and III secretion system protein AMJAP_2184 PF03958 Bacterial type II/III secretion system short domain AMJAP_2186 PF12973 ChrR Cupin-like domain AMJAP_2187 PF04542 Sigma-70 region 2 AMJAP_2187 PF04545 Sigma-70, region 4 AMJAP_2188 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMJAP_2188 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_2197 PF00563 EAL domain AMJAP_2197 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_2197 PF03707 Bacterial signalling protein N terminal repeat AMJAP_2198 PF02798 Glutathione S-transferase, N-terminal domain AMJAP_2198 PF14497 Glutathione S-transferase, C-terminal domain AMJAP_2201 PF03466 LysR substrate binding domain AMJAP_2201 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2203 PF08223 PaaX-like protein C-terminal domain AMJAP_2203 PF07848 PaaX-like protein AMJAP_2204 PF00132 Bacterial transferase hexapeptide (six repeats) AMJAP_2205 PF00171 Aldehyde dehydrogenase family AMJAP_2206 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_2207 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_2208 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMJAP_2208 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain AMJAP_2208 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMJAP_2209 PF03061 Thioesterase superfamily AMJAP_2210 PF02803 Thiolase, C-terminal domain AMJAP_2210 PF00108 Thiolase, N-terminal domain AMJAP_2211 PF00501 AMP-binding enzyme AMJAP_2211 PF14535 AMP-binding enzyme C-terminal domain AMJAP_2212 PF05138 Phenylacetic acid catabolic protein AMJAP_2213 PF06243 Phenylacetic acid degradation B AMJAP_2214 PF05138 Phenylacetic acid catabolic protein AMJAP_2215 PF01883 Iron-sulfur cluster assembly protein AMJAP_2216 PF00970 Oxidoreductase FAD-binding domain AMJAP_2216 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJAP_2216 PF00175 Oxidoreductase NAD-binding domain AMJAP_2217 PF00171 Aldehyde dehydrogenase family AMJAP_2217 PF01575 MaoC like domain AMJAP_2218 PF04317 YcjX-like family, DUF463 AMJAP_2225 PF18766 SWI2/SNF2 ATPase AMJAP_2225 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AMJAP_2225 PF11867 Domain of unknown function (DUF3387) AMJAP_2228 PF02384 N-6 DNA Methylase AMJAP_2228 PF12161 HsdM N-terminal domain AMJAP_2229 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMJAP_2230 PF00072 Response regulator receiver domain AMJAP_2231 PF00005 ABC transporter AMJAP_2233 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_2234 PF00005 ABC transporter AMJAP_2235 PF04324 BFD-like [2Fe-2S] binding domain AMJAP_2235 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_2235 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMJAP_2235 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMJAP_2235 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMJAP_2236 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMJAP_2236 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMJAP_2236 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_2236 PF04324 BFD-like [2Fe-2S] binding domain AMJAP_2236 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMJAP_2237 PF13806 Rieske-like [2Fe-2S] domain AMJAP_2238 PF00384 Molybdopterin oxidoreductase AMJAP_2238 PF01568 Molydopterin dinucleotide binding domain AMJAP_2238 PF04324 BFD-like [2Fe-2S] binding domain AMJAP_2238 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMJAP_2239 PF01219 Prokaryotic diacylglycerol kinase AMJAP_2241 PF01207 Dihydrouridine synthase (Dus) AMJAP_2242 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMJAP_2243 PF04333 MlaA lipoprotein AMJAP_2244 PF13609 Gram-negative porin AMJAP_2245 PF00270 DEAD/DEAH box helicase AMJAP_2245 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMJAP_2245 PF00271 Helicase conserved C-terminal domain AMJAP_2245 PF04408 Helicase associated domain (HA2) AMJAP_2245 PF11898 Domain of unknown function (DUF3418) AMJAP_2246 PF13230 Glutamine amidotransferases class-II AMJAP_2248 PF04225 Opacity-associated protein A LysM-like domain AMJAP_2248 PF01551 Peptidase family M23 AMJAP_2251 PF00108 Thiolase, N-terminal domain AMJAP_2251 PF02803 Thiolase, C-terminal domain AMJAP_2252 PF00171 Aldehyde dehydrogenase family AMJAP_2252 PF01619 Proline dehydrogenase AMJAP_2252 PF14850 DNA-binding domain of Proline dehydrogenase AMJAP_2252 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMJAP_2253 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AMJAP_2253 PF03641 Possible lysine decarboxylase AMJAP_2253 PF11892 Domain of unknown function (DUF3412) AMJAP_2254 PF02146 Sir2 family AMJAP_2255 PF02562 PhoH-like protein AMJAP_2255 PF13638 PIN domain AMJAP_2256 PF01809 Putative membrane protein insertion efficiency factor AMJAP_2258 PF05552 Conserved TM helix AMJAP_2258 PF00924 Mechanosensitive ion channel AMJAP_2259 PF04851 Type III restriction enzyme, res subunit AMJAP_2259 PF00271 Helicase conserved C-terminal domain AMJAP_2260 PF03466 LysR substrate binding domain AMJAP_2260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2263 PF08534 Redoxin AMJAP_2263 PF00462 Glutaredoxin AMJAP_2265 PF03591 AzlC protein AMJAP_2272 PF03466 LysR substrate binding domain AMJAP_2272 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2273 PF01810 LysE type translocator AMJAP_2274 PF12801 4Fe-4S binding domain AMJAP_2274 PF04205 FMN-binding domain AMJAP_2275 PF03466 LysR substrate binding domain AMJAP_2275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2276 PF03358 NADPH-dependent FMN reductase AMJAP_2277 PF01292 Prokaryotic cytochrome b561 AMJAP_2278 PF04264 YceI-like domain AMJAP_2279 PF03061 Thioesterase superfamily AMJAP_2280 PF03641 Possible lysine decarboxylase AMJAP_2281 PF00313 'Cold-shock' DNA-binding domain AMJAP_2282 PF09831 Uncharacterized protein conserved in bacteria (DUF2058) AMJAP_2283 PF00313 'Cold-shock' DNA-binding domain AMJAP_2286 PF02347 Glycine cleavage system P-protein AMJAP_2287 PF01597 Glycine cleavage H-protein AMJAP_2288 PF00464 Serine hydroxymethyltransferase AMJAP_2289 PF03315 Serine dehydratase beta chain AMJAP_2289 PF03313 Serine dehydratase alpha chain AMJAP_2291 PF01235 Sodium:alanine symporter family AMJAP_2292 PF01571 Aminomethyltransferase folate-binding domain AMJAP_2292 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJAP_2293 PF04055 Radical SAM superfamily AMJAP_2294 PF01636 Phosphotransferase enzyme family AMJAP_2297 PF06339 Ectoine synthase AMJAP_2298 PF00202 Aminotransferase class-III AMJAP_2299 PF00583 Acetyltransferase (GNAT) family AMJAP_2300 PF01047 MarR family AMJAP_2301 PF01168 Alanine racemase, N-terminal domain AMJAP_2301 PF00842 Alanine racemase, C-terminal domain AMJAP_2302 PF01042 Endoribonuclease L-PSP AMJAP_2303 PF01266 FAD dependent oxidoreductase AMJAP_2304 PF01037 Lrp/AsnC ligand binding domain AMJAP_2305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2305 PF03466 LysR substrate binding domain AMJAP_2306 PF00291 Pyridoxal-phosphate dependent enzyme AMJAP_2307 PF01235 Sodium:alanine symporter family AMJAP_2308 PF12146 Serine aminopeptidase, S33 AMJAP_2309 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2309 PF03466 LysR substrate binding domain AMJAP_2310 PF00202 Aminotransferase class-III AMJAP_2311 PF07883 Cupin domain AMJAP_2311 PF01381 Helix-turn-helix AMJAP_2312 PF00171 Aldehyde dehydrogenase family AMJAP_2313 PF02515 CoA-transferase family III AMJAP_2314 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJAP_2314 PF02770 Acyl-CoA dehydrogenase, middle domain AMJAP_2314 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJAP_2315 PF04304 Protein of unknown function (DUF454) AMJAP_2316 PF08267 Cobalamin-independent synthase, N-terminal domain AMJAP_2316 PF01717 Cobalamin-independent synthase, Catalytic domain AMJAP_2318 PF01177 Asp/Glu/Hydantoin racemase AMJAP_2322 PF04324 BFD-like [2Fe-2S] binding domain AMJAP_2322 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_2324 PF01266 FAD dependent oxidoreductase AMJAP_2325 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJAP_2326 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_2326 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMJAP_2328 PF03466 LysR substrate binding domain AMJAP_2328 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2330 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMJAP_2331 PF01730 UreF AMJAP_2332 PF02814 UreE urease accessory protein, N-terminal domain AMJAP_2332 PF05194 UreE urease accessory protein, C-terminal domain AMJAP_2333 PF01979 Amidohydrolase family AMJAP_2333 PF00449 Urease alpha-subunit, N-terminal domain AMJAP_2334 PF00699 Urease beta subunit AMJAP_2335 PF00547 Urease, gamma subunit AMJAP_2336 PF01774 UreD urease accessory protein AMJAP_2337 PF00005 ABC transporter AMJAP_2338 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJAP_2338 PF00005 ABC transporter AMJAP_2340 PF02653 Branched-chain amino acid transport system / permease component AMJAP_2344 PF12833 Helix-turn-helix domain AMJAP_2344 PF12852 Cupin AMJAP_2347 PF00072 Response regulator receiver domain AMJAP_2347 PF00486 Transcriptional regulatory protein, C terminal AMJAP_2348 PF00072 Response regulator receiver domain AMJAP_2348 PF09308 LuxQ, periplasmic AMJAP_2348 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_2348 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_2350 PF03466 LysR substrate binding domain AMJAP_2350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2351 PF01425 Amidase AMJAP_2355 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJAP_2355 PF00175 Oxidoreductase NAD-binding domain AMJAP_2356 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMJAP_2356 PF00355 Rieske [2Fe-2S] domain AMJAP_2357 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJAP_2359 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_2362 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2362 PF03466 LysR substrate binding domain AMJAP_2365 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMJAP_2365 PF00037 4Fe-4S binding domain AMJAP_2365 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMJAP_2366 PF00037 4Fe-4S binding domain AMJAP_2366 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMJAP_2366 PF00384 Molybdopterin oxidoreductase AMJAP_2366 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMJAP_2366 PF01568 Molydopterin dinucleotide binding domain AMJAP_2367 PF02634 FdhD/NarQ family AMJAP_2374 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_2374 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMJAP_2376 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJAP_2377 PF00106 short chain dehydrogenase AMJAP_2380 PF01965 DJ-1/PfpI family AMJAP_2380 PF12833 Helix-turn-helix domain AMJAP_2381 PF08240 Alcohol dehydrogenase GroES-like domain AMJAP_2381 PF00107 Zinc-binding dehydrogenase AMJAP_2383 PF00571 CBS domain AMJAP_2384 PF00042 Globin AMJAP_2384 PF00175 Oxidoreductase NAD-binding domain AMJAP_2384 PF00970 Oxidoreductase FAD-binding domain AMJAP_2385 PF00355 Rieske [2Fe-2S] domain AMJAP_2385 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AMJAP_2386 PF03807 NADP oxidoreductase coenzyme F420-dependent AMJAP_2386 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMJAP_2388 PF02028 BCCT, betaine/carnitine/choline family transporter AMJAP_2390 PF00766 Electron transfer flavoprotein FAD-binding domain AMJAP_2390 PF01012 Electron transfer flavoprotein domain AMJAP_2391 PF02754 Cysteine-rich domain AMJAP_2391 PF13183 4Fe-4S dicluster domain AMJAP_2392 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMJAP_2396 PF01965 DJ-1/PfpI family AMJAP_2396 PF12833 Helix-turn-helix domain AMJAP_2397 PF00072 Response regulator receiver domain AMJAP_2397 PF00486 Transcriptional regulatory protein, C terminal AMJAP_2399 PF01627 Hpt domain AMJAP_2399 PF00672 HAMP domain AMJAP_2399 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_2399 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_2399 PF17149 Periplasmic sensor domain found in signal transduction proteins AMJAP_2399 PF00072 Response regulator receiver domain AMJAP_2401 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_2404 PF12833 Helix-turn-helix domain AMJAP_2405 PF03315 Serine dehydratase beta chain AMJAP_2405 PF03313 Serine dehydratase alpha chain AMJAP_2406 PF00551 Formyl transferase AMJAP_2408 PF17806 Sarcosine oxidase A3 domain AMJAP_2408 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_2408 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJAP_2408 PF01571 Aminomethyltransferase folate-binding domain AMJAP_2410 PF01266 FAD dependent oxidoreductase AMJAP_2411 PF00464 Serine hydroxymethyltransferase AMJAP_2412 PF12833 Helix-turn-helix domain AMJAP_2415 PF07859 alpha/beta hydrolase fold AMJAP_2416 PF00132 Bacterial transferase hexapeptide (six repeats) AMJAP_2417 PF02649 Type I GTP cyclohydrolase folE2 AMJAP_2418 PF01979 Amidohydrolase family AMJAP_2419 PF01502 Phosphoribosyl-AMP cyclohydrolase AMJAP_2421 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJAP_2421 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJAP_2421 PF08659 KR domain AMJAP_2421 PF00550 Phosphopantetheine attachment site AMJAP_2421 PF16197 Ketoacyl-synthetase C-terminal extension AMJAP_2421 PF08240 Alcohol dehydrogenase GroES-like domain AMJAP_2421 PF14765 Polyketide synthase dehydratase AMJAP_2421 PF09277 Erythronolide synthase, docking AMJAP_2421 PF08990 Erythronolide synthase docking AMJAP_2421 PF00698 Acyl transferase domain AMJAP_2422 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2422 PF03466 LysR substrate binding domain AMJAP_2423 PF01323 DSBA-like thioredoxin domain AMJAP_2424 PF04337 Protein of unknown function, DUF480 AMJAP_2425 PF03475 3-alpha domain AMJAP_2425 PF03473 MOSC domain AMJAP_2426 PF02954 Bacterial regulatory protein, Fis family AMJAP_2426 PF00158 Sigma-54 interaction domain AMJAP_2426 PF01590 GAF domain AMJAP_2429 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit AMJAP_2432 PF00171 Aldehyde dehydrogenase family AMJAP_2433 PF01494 FAD binding domain AMJAP_2434 PF00082 Subtilase family AMJAP_2435 PF00664 ABC transporter transmembrane region AMJAP_2435 PF00005 ABC transporter AMJAP_2437 PF08992 Quinohemoprotein amine dehydrogenase, gamma subunit AMJAP_2440 PF00486 Transcriptional regulatory protein, C terminal AMJAP_2440 PF00072 Response regulator receiver domain AMJAP_2441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_2441 PF00072 Response regulator receiver domain AMJAP_2441 PF01627 Hpt domain AMJAP_2441 PF17149 Periplasmic sensor domain found in signal transduction proteins AMJAP_2441 PF00672 HAMP domain AMJAP_2441 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_2442 PF00171 Aldehyde dehydrogenase family AMJAP_2444 PF01427 D-ala-D-ala dipeptidase AMJAP_2445 PF00313 'Cold-shock' DNA-binding domain AMJAP_2446 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_2446 PF03707 Bacterial signalling protein N terminal repeat AMJAP_2446 PF00563 EAL domain AMJAP_2447 PF00271 Helicase conserved C-terminal domain AMJAP_2447 PF00270 DEAD/DEAH box helicase AMJAP_2448 PF07690 Major Facilitator Superfamily AMJAP_2449 PF07690 Major Facilitator Superfamily AMJAP_2450 PF00672 HAMP domain AMJAP_2450 PF07730 Histidine kinase AMJAP_2450 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AMJAP_2450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_2451 PF00196 Bacterial regulatory proteins, luxR family AMJAP_2451 PF00072 Response regulator receiver domain AMJAP_2452 PF07690 Major Facilitator Superfamily AMJAP_2453 PF00069 Protein kinase domain AMJAP_2453 PF03793 PASTA domain AMJAP_2454 PF04055 Radical SAM superfamily AMJAP_2458 PF12804 MobA-like NTP transferase domain AMJAP_2459 PF00994 Probable molybdopterin binding domain AMJAP_2459 PF03453 MoeA N-terminal region (domain I and II) AMJAP_2459 PF03454 MoeA C-terminal region (domain IV) AMJAP_2460 PF00994 Probable molybdopterin binding domain AMJAP_2461 PF13545 Crp-like helix-turn-helix domain AMJAP_2461 PF00027 Cyclic nucleotide-binding domain AMJAP_2462 PF06463 Molybdenum Cofactor Synthesis C AMJAP_2462 PF04055 Radical SAM superfamily AMJAP_2463 PF00484 Carbonic anhydrase AMJAP_2464 PF00639 PPIC-type PPIASE domain AMJAP_2464 PF09312 SurA N-terminal domain AMJAP_2465 PF02665 Nitrate reductase gamma subunit AMJAP_2466 PF02613 Nitrate reductase delta subunit AMJAP_2467 PF14711 Respiratory nitrate reductase beta C-terminal AMJAP_2467 PF13247 4Fe-4S dicluster domain AMJAP_2468 PF14710 Respiratory nitrate reductase alpha N-terminal AMJAP_2468 PF01568 Molydopterin dinucleotide binding domain AMJAP_2468 PF00384 Molybdopterin oxidoreductase AMJAP_2473 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_2473 PF03707 Bacterial signalling protein N terminal repeat AMJAP_2473 PF00563 EAL domain AMJAP_2474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2474 PF03466 LysR substrate binding domain AMJAP_2477 PF01425 Amidase AMJAP_2480 PF12848 ABC transporter AMJAP_2480 PF00005 ABC transporter AMJAP_2484 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_2485 PF00486 Transcriptional regulatory protein, C terminal AMJAP_2485 PF00072 Response regulator receiver domain AMJAP_2490 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_2491 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMJAP_2491 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMJAP_2492 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMJAP_2492 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMJAP_2493 PF00005 ABC transporter AMJAP_2494 PF00296 Luciferase-like monooxygenase AMJAP_2498 PF13614 AAA domain AMJAP_2499 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJAP_2499 PF12729 Four helix bundle sensory module for signal transduction AMJAP_2499 PF00672 HAMP domain AMJAP_2501 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJAP_2501 PF02770 Acyl-CoA dehydrogenase, middle domain AMJAP_2501 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJAP_2501 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMJAP_2502 PF00766 Electron transfer flavoprotein FAD-binding domain AMJAP_2502 PF01012 Electron transfer flavoprotein domain AMJAP_2503 PF01012 Electron transfer flavoprotein domain AMJAP_2504 PF12833 Helix-turn-helix domain AMJAP_2504 PF02311 AraC-like ligand binding domain AMJAP_2506 PF00501 AMP-binding enzyme AMJAP_2506 PF13193 AMP-binding enzyme C-terminal domain AMJAP_2507 PF08448 PAS fold AMJAP_2507 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_2507 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_2507 PF00072 Response regulator receiver domain AMJAP_2507 PF13188 PAS domain AMJAP_2508 PF00486 Transcriptional regulatory protein, C terminal AMJAP_2508 PF00072 Response regulator receiver domain AMJAP_2510 PF01061 ABC-2 type transporter AMJAP_2511 PF00005 ABC transporter AMJAP_2514 PF01613 Flavin reductase like domain AMJAP_2515 PF01609 Transposase DDE domain AMJAP_2515 PF05598 Transposase domain (DUF772) AMJAP_2516 PF00582 Universal stress protein family AMJAP_2518 PF14870 Photosynthesis system II assembly factor YCF48 AMJAP_2519 PF07044 Protein of unknown function (DUF1329) AMJAP_2522 PF00561 alpha/beta hydrolase fold AMJAP_2523 PF01565 FAD binding domain AMJAP_2523 PF09330 D-lactate dehydrogenase, membrane binding AMJAP_2524 PF00106 short chain dehydrogenase AMJAP_2525 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMJAP_2525 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AMJAP_2526 PF00682 HMGL-like AMJAP_2526 PF07836 DmpG-like communication domain AMJAP_2528 PF00501 AMP-binding enzyme AMJAP_2528 PF13193 AMP-binding enzyme C-terminal domain AMJAP_2531 PF00881 Nitroreductase family AMJAP_2532 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_2532 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMJAP_2532 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMJAP_2533 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_2534 PF02803 Thiolase, C-terminal domain AMJAP_2534 PF00108 Thiolase, N-terminal domain AMJAP_2535 PF12833 Helix-turn-helix domain AMJAP_2535 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMJAP_2536 PF12327 FtsZ family, C-terminal domain AMJAP_2536 PF00091 Tubulin/FtsZ family, GTPase domain AMJAP_2537 PF02491 SHS2 domain inserted in FTSA AMJAP_2539 PF02646 RmuC family AMJAP_2545 PF13617 YnbE-like lipoprotein AMJAP_2550 PF02347 Glycine cleavage system P-protein AMJAP_2552 PF02798 Glutathione S-transferase, N-terminal domain AMJAP_2554 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2554 PF03466 LysR substrate binding domain AMJAP_2556 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2556 PF03466 LysR substrate binding domain AMJAP_2557 PF17954 Quercetinase C-terminal cupin domain AMJAP_2557 PF02678 Pirin AMJAP_2558 PF00857 Isochorismatase family AMJAP_2559 PF03193 RsgA GTPase AMJAP_2561 PF07724 AAA domain (Cdc48 subfamily) AMJAP_2561 PF10431 C-terminal, D2-small domain, of ClpB protein AMJAP_2561 PF00004 ATPase family associated with various cellular activities (AAA) AMJAP_2562 PF00271 Helicase conserved C-terminal domain AMJAP_2562 PF00270 DEAD/DEAH box helicase AMJAP_2565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2565 PF03466 LysR substrate binding domain AMJAP_2566 PF02798 Glutathione S-transferase, N-terminal domain AMJAP_2568 PF13476 AAA domain AMJAP_2569 PF00149 Calcineurin-like phosphoesterase AMJAP_2569 PF12320 Type 5 capsule protein repressor C-terminal domain AMJAP_2570 PF03458 UPF0126 domain AMJAP_2573 PF12833 Helix-turn-helix domain AMJAP_2573 PF02311 AraC-like ligand binding domain AMJAP_2574 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMJAP_2575 PF00005 ABC transporter AMJAP_2578 PF01476 LysM domain AMJAP_2578 PF01551 Peptidase family M23 AMJAP_2578 PF08525 Opacity-associated protein A N-terminal motif AMJAP_2582 PF01292 Prokaryotic cytochrome b561 AMJAP_2584 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMJAP_2585 PF09500 Putative thioesterase (yiiD_Cterm) AMJAP_2585 PF00583 Acetyltransferase (GNAT) family AMJAP_2586 PF00881 Nitroreductase family AMJAP_2587 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMJAP_2587 PF14489 QueF-like protein AMJAP_2588 PF01061 ABC-2 type transporter AMJAP_2589 PF00005 ABC transporter AMJAP_2591 PF03707 Bacterial signalling protein N terminal repeat AMJAP_2591 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_2591 PF00563 EAL domain AMJAP_2594 PF04143 Sulphur transport AMJAP_2595 PF01037 Lrp/AsnC ligand binding domain AMJAP_2596 PF07670 Nucleoside recognition AMJAP_2597 PF00892 EamA-like transporter family AMJAP_2599 PF00216 Bacterial DNA-binding protein AMJAP_2600 PF03147 Ferredoxin-fold anticodon binding domain AMJAP_2600 PF03484 tRNA synthetase B5 domain AMJAP_2600 PF01588 Putative tRNA binding domain AMJAP_2600 PF03483 B3/4 domain AMJAP_2600 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMJAP_2601 PF01409 tRNA synthetases class II core domain (F) AMJAP_2601 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMJAP_2602 PF00453 Ribosomal protein L20 AMJAP_2603 PF01632 Ribosomal protein L35 AMJAP_2604 PF05198 Translation initiation factor IF-3, N-terminal domain AMJAP_2604 PF00707 Translation initiation factor IF-3, C-terminal domain AMJAP_2605 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMJAP_2605 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMJAP_2605 PF03129 Anticodon binding domain AMJAP_2605 PF02824 TGS domain AMJAP_2606 PF07840 FadR C-terminal domain AMJAP_2606 PF00392 Bacterial regulatory proteins, gntR family AMJAP_2607 PF02754 Cysteine-rich domain AMJAP_2608 PF13183 4Fe-4S dicluster domain AMJAP_2608 PF11870 Domain of unknown function (DUF3390) AMJAP_2608 PF02589 LUD domain AMJAP_2609 PF02589 LUD domain AMJAP_2610 PF00034 Cytochrome c AMJAP_2610 PF03150 Di-haem cytochrome c peroxidase AMJAP_2611 PF03707 Bacterial signalling protein N terminal repeat AMJAP_2611 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_2611 PF00563 EAL domain AMJAP_2613 PF03104 DNA polymerase family B, exonuclease domain AMJAP_2613 PF00136 DNA polymerase family B AMJAP_2616 PF08544 GHMP kinases C terminal AMJAP_2616 PF00288 GHMP kinases N terminal domain AMJAP_2617 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal AMJAP_2617 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal AMJAP_2618 PF01070 FMN-dependent dehydrogenase AMJAP_2622 PF00764 Arginosuccinate synthase AMJAP_2624 PF00929 Exonuclease AMJAP_2625 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMJAP_2625 PF00578 AhpC/TSA family AMJAP_2626 PF00462 Glutaredoxin AMJAP_2627 PF00202 Aminotransferase class-III AMJAP_2628 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMJAP_2628 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMJAP_2629 PF03466 LysR substrate binding domain AMJAP_2629 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2631 PF02627 Carboxymuconolactone decarboxylase family AMJAP_2632 PF01474 Class-II DAHP synthetase family AMJAP_2636 PF07556 Protein of unknown function (DUF1538) AMJAP_2637 PF07556 Protein of unknown function (DUF1538) AMJAP_2641 PF01743 Poly A polymerase head domain AMJAP_2641 PF00571 CBS domain AMJAP_2642 PF00551 Formyl transferase AMJAP_2642 PF01842 ACT domain AMJAP_2643 PF00591 Glycosyl transferase family, a/b domain AMJAP_2643 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AMJAP_2643 PF02885 Glycosyl transferase family, helical bundle domain AMJAP_2646 PF00881 Nitroreductase family AMJAP_2649 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_2649 PF03707 Bacterial signalling protein N terminal repeat AMJAP_2649 PF00563 EAL domain AMJAP_2650 PF00258 Flavodoxin AMJAP_2653 PF05683 Fumarase C-terminus AMJAP_2653 PF05681 Fumarate hydratase (Fumerase) AMJAP_2654 PF01040 UbiA prenyltransferase family AMJAP_2655 PF16325 Peptidase family U32 C-terminal domain AMJAP_2655 PF01136 Peptidase family U32 AMJAP_2657 PF00043 Glutathione S-transferase, C-terminal domain AMJAP_2657 PF13417 Glutathione S-transferase, N-terminal domain AMJAP_2659 PF00118 TCP-1/cpn60 chaperonin family AMJAP_2660 PF00166 Chaperonin 10 Kd subunit AMJAP_2661 PF04186 FxsA cytoplasmic membrane protein AMJAP_2663 PF07690 Major Facilitator Superfamily AMJAP_2664 PF04461 Protein of unknown function (DUF520) AMJAP_2665 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMJAP_2665 PF02558 Ketopantoate reductase PanE/ApbA AMJAP_2666 PF03976 Polyphosphate kinase 2 (PPK2) AMJAP_2667 PF00593 TonB dependent receptor AMJAP_2667 PF07715 TonB-dependent Receptor Plug Domain AMJAP_2668 PF01923 Cobalamin adenosyltransferase AMJAP_2670 PF01497 Periplasmic binding protein AMJAP_2674 PF08240 Alcohol dehydrogenase GroES-like domain AMJAP_2674 PF00107 Zinc-binding dehydrogenase AMJAP_2675 PF00392 Bacterial regulatory proteins, gntR family AMJAP_2675 PF07729 FCD domain AMJAP_2677 PF01784 NIF3 (NGG1p interacting factor 3) AMJAP_2678 PF13180 PDZ domain AMJAP_2679 PF00815 Histidinol dehydrogenase AMJAP_2680 PF01634 ATP phosphoribosyltransferase AMJAP_2681 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMJAP_2685 PF02470 MlaD protein AMJAP_2686 PF02405 Permease MlaE AMJAP_2687 PF00005 ABC transporter AMJAP_2688 PF01699 Sodium/calcium exchanger protein AMJAP_2689 PF01380 SIS domain AMJAP_2689 PF00571 CBS domain AMJAP_2692 PF03968 OstA-like protein AMJAP_2693 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJAP_2693 PF00005 ABC transporter AMJAP_2694 PF04963 Sigma-54 factor, core binding domain AMJAP_2694 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMJAP_2694 PF04552 Sigma-54, DNA binding domain AMJAP_2695 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMJAP_2696 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMJAP_2697 PF03668 P-loop ATPase protein family AMJAP_2698 PF00381 PTS HPr component phosphorylation site AMJAP_2699 PF00571 CBS domain AMJAP_2699 PF03448 MgtE intracellular N domain AMJAP_2699 PF01769 Divalent cation transporter AMJAP_2700 PF04751 Protein of unknown function (DUF615) AMJAP_2702 PF10150 Ribonuclease E/G family AMJAP_2702 PF00575 S1 RNA binding domain AMJAP_2703 PF02545 Maf-like protein AMJAP_2704 PF04093 rod shape-determining protein MreD AMJAP_2705 PF04085 rod shape-determining protein MreC AMJAP_2707 PF02686 Glu-tRNAGln amidotransferase C subunit AMJAP_2708 PF01425 Amidase AMJAP_2709 PF02637 GatB domain AMJAP_2709 PF02934 GatB/GatE catalytic domain AMJAP_2710 PF01625 Peptide methionine sulfoxide reductase AMJAP_2711 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMJAP_2711 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMJAP_2713 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMJAP_2718 PF00313 'Cold-shock' DNA-binding domain AMJAP_2719 PF04102 SlyX AMJAP_2720 PF04445 Putative SAM-dependent methyltransferase AMJAP_2721 PF02673 Bacitracin resistance protein BacA AMJAP_2722 PF00814 Glycoprotease family AMJAP_2723 PF02441 Flavoprotein AMJAP_2724 PF08245 Mur ligase middle domain AMJAP_2724 PF01225 Mur ligase family, catalytic domain AMJAP_2724 PF02875 Mur ligase family, glutamate ligase domain AMJAP_2725 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMJAP_2726 PF00719 Inorganic pyrophosphatase AMJAP_2727 PF05661 Protein of unknown function (DUF808) AMJAP_2729 PF00881 Nitroreductase family AMJAP_2730 PF03466 LysR substrate binding domain AMJAP_2730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2735 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMJAP_2735 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMJAP_2736 PF00860 Permease family AMJAP_2738 PF00142 4Fe-4S iron sulfur cluster binding proteins, NifH/frxC family AMJAP_2740 PF01220 Dehydroquinase class II AMJAP_2741 PF00364 Biotin-requiring enzyme AMJAP_2742 PF00289 Biotin carboxylase, N-terminal domain AMJAP_2742 PF02785 Biotin carboxylase C-terminal domain AMJAP_2742 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJAP_2745 PF01207 Dihydrouridine synthase (Dus) AMJAP_2746 PF02954 Bacterial regulatory protein, Fis family AMJAP_2747 PF02142 MGS-like domain AMJAP_2747 PF01808 AICARFT/IMPCHase bienzyme AMJAP_2748 PF02844 Phosphoribosylglycinamide synthetase, N domain AMJAP_2748 PF02843 Phosphoribosylglycinamide synthetase, C domain AMJAP_2748 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMJAP_2751 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AMJAP_2751 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AMJAP_2752 PF00676 Dehydrogenase E1 component AMJAP_2753 PF02780 Transketolase, C-terminal domain AMJAP_2753 PF02779 Transketolase, pyrimidine binding domain AMJAP_2754 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMJAP_2754 PF02817 e3 binding domain AMJAP_2754 PF00364 Biotin-requiring enzyme AMJAP_2755 PF06798 PrkA serine protein kinase C-terminal domain AMJAP_2755 PF08298 PrkA AAA domain AMJAP_2756 PF04285 Protein of unknown function (DUF444) AMJAP_2757 PF04293 SpoVR like protein AMJAP_2758 PF01230 HIT domain AMJAP_2760 PF01515 Phosphate acetyl/butaryl transferase AMJAP_2761 PF00871 Acetokinase family AMJAP_2763 PF00873 AcrB/AcrD/AcrF family AMJAP_2766 PF08274 PhnA Zinc-Ribbon AMJAP_2766 PF03831 PhnA domain AMJAP_2768 PF00588 SpoU rRNA Methylase family AMJAP_2768 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMJAP_2769 PF00762 Ferrochelatase AMJAP_2770 PF05191 Adenylate kinase, active site lid AMJAP_2771 PF00311 Phosphoenolpyruvate carboxylase AMJAP_2773 PF03819 MazG nucleotide pyrophosphohydrolase domain AMJAP_2774 PF13291 ACT domain AMJAP_2774 PF04607 Region found in RelA / SpoT proteins AMJAP_2774 PF02824 TGS domain AMJAP_2775 PF00291 Pyridoxal-phosphate dependent enzyme AMJAP_2777 PF01648 4'-phosphopantetheinyl transferase superfamily AMJAP_2778 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMJAP_2779 PF02565 Recombination protein O C terminal AMJAP_2779 PF11967 Recombination protein O N terminal AMJAP_2780 PF01926 50S ribosome-binding GTPase AMJAP_2780 PF07650 KH domain AMJAP_2781 PF00035 Double-stranded RNA binding motif AMJAP_2781 PF14622 Ribonuclease-III-like AMJAP_2783 PF10502 Signal peptidase, peptidase S26 AMJAP_2784 PF06421 GTP-binding protein LepA C-terminus AMJAP_2784 PF00679 Elongation factor G C-terminus AMJAP_2784 PF00009 Elongation factor Tu GTP binding domain AMJAP_2784 PF03144 Elongation factor Tu domain 2 AMJAP_2785 PF13180 PDZ domain AMJAP_2787 PF03873 Anti sigma-E protein RseA, C-terminal domain AMJAP_2787 PF03872 Anti sigma-E protein RseA, N-terminal domain AMJAP_2788 PF04542 Sigma-70 region 2 AMJAP_2788 PF08281 Sigma-70, region 4 AMJAP_2789 PF00890 FAD binding domain AMJAP_2789 PF02910 Fumarate reductase flavoprotein C-term AMJAP_2791 PF03937 Flavinator of succinate dehydrogenase AMJAP_2792 PF01926 50S ribosome-binding GTPase AMJAP_2792 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMJAP_2793 PF13360 PQQ-like domain AMJAP_2794 PF09976 Tetratricopeptide repeat-like domain AMJAP_2795 PF13393 Histidyl-tRNA synthetase AMJAP_2795 PF03129 Anticodon binding domain AMJAP_2798 PF04055 Radical SAM superfamily AMJAP_2799 PF00334 Nucleoside diphosphate kinase AMJAP_2800 PF04384 Iron-sulphur cluster assembly AMJAP_2801 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJAP_2802 PF00012 Hsp70 protein AMJAP_2803 PF07743 HSCB C-terminal oligomerisation domain AMJAP_2804 PF01521 Iron-sulphur cluster biosynthesis AMJAP_2805 PF01592 NifU-like N terminal domain AMJAP_2806 PF00266 Aminotransferase class-V AMJAP_2807 PF02082 Transcriptional regulator AMJAP_2808 PF00588 SpoU rRNA Methylase family AMJAP_2809 PF00459 Inositol monophosphatase family AMJAP_2810 PF00709 Adenylosuccinate synthetase AMJAP_2811 PF13393 Histidyl-tRNA synthetase AMJAP_2813 PF01145 SPFH domain / Band 7 family AMJAP_2814 PF12221 Bacterial membrane protein N terminal AMJAP_2814 PF01145 SPFH domain / Band 7 family AMJAP_2815 PF01926 50S ribosome-binding GTPase AMJAP_2815 PF16360 GTP-binding GTPase Middle Region AMJAP_2815 PF13167 GTP-binding GTPase N-terminal AMJAP_2816 PF17209 Hfq protein AMJAP_2818 PF01119 DNA mismatch repair protein, C-terminal domain AMJAP_2818 PF08676 MutL C terminal dimerisation domain AMJAP_2819 PF11741 AMIN domain AMJAP_2819 PF01520 N-acetylmuramoyl-L-alanine amidase AMJAP_2820 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMJAP_2821 PF03853 YjeF-related protein N-terminus AMJAP_2821 PF01256 Carbohydrate kinase AMJAP_2822 PF08331 Domain of unknown function (DUF1730) AMJAP_2823 PF00563 EAL domain AMJAP_2823 PF08448 PAS fold AMJAP_2823 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_2824 PF00929 Exonuclease AMJAP_2825 PF03193 RsgA GTPase AMJAP_2827 PF00581 Rhodanese-like domain AMJAP_2828 PF02666 Phosphatidylserine decarboxylase AMJAP_2830 PF08207 Elongation factor P (EF-P) KOW-like domain AMJAP_2830 PF09285 Elongation factor P, C-terminal AMJAP_2830 PF01132 Elongation factor P (EF-P) OB domain AMJAP_2832 PF03167 Uracil DNA glycosylase superfamily AMJAP_2834 PF00152 tRNA synthetases class II (D, K and N) AMJAP_2834 PF01336 OB-fold nucleic acid binding domain AMJAP_2835 PF00472 RF-1 domain AMJAP_2835 PF03462 PCRF domain AMJAP_2836 PF03600 Citrate transporter AMJAP_2837 PF00258 Flavodoxin AMJAP_2839 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJAP_2841 PF04143 Sulphur transport AMJAP_2843 PF03739 Lipopolysaccharide export system permease LptF/LptG AMJAP_2844 PF03739 Lipopolysaccharide export system permease LptF/LptG AMJAP_2845 PF00883 Cytosol aminopeptidase family, catalytic domain AMJAP_2845 PF02789 Cytosol aminopeptidase family, N-terminal domain AMJAP_2846 PF04364 DNA polymerase III chi subunit, HolC AMJAP_2848 PF08264 Anticodon-binding domain of tRNA AMJAP_2848 PF10458 Valyl tRNA synthetase tRNA binding arm AMJAP_2848 PF00133 tRNA synthetases class I (I, L, M and V) AMJAP_2854 PF06062 Uncharacterised protein family (UPF0231) AMJAP_2856 PF03707 Bacterial signalling protein N terminal repeat AMJAP_2856 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_2856 PF00563 EAL domain AMJAP_2857 PF00155 Aminotransferase class I and II AMJAP_2857 PF00392 Bacterial regulatory proteins, gntR family AMJAP_2858 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMJAP_2858 PF12801 4Fe-4S binding domain AMJAP_2858 PF13746 4Fe-4S dicluster domain AMJAP_2861 PF01145 SPFH domain / Band 7 family AMJAP_2861 PF16200 C-terminal region of band_7 AMJAP_2863 PF00440 Bacterial regulatory proteins, tetR family AMJAP_2865 PF00072 Response regulator receiver domain AMJAP_2865 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_2870 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMJAP_2871 PF02230 Phospholipase/Carboxylesterase AMJAP_2872 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMJAP_2872 PF01243 Pyridoxamine 5'-phosphate oxidase AMJAP_2873 PF03881 Fructosamine kinase AMJAP_2874 PF04403 Paraquat-inducible protein A AMJAP_2875 PF04403 Paraquat-inducible protein A AMJAP_2876 PF02470 MlaD protein AMJAP_2879 PF00485 Phosphoribulokinase / Uridine kinase family AMJAP_2881 PF13533 Biotin-lipoyl like AMJAP_2882 PF00873 AcrB/AcrD/AcrF family AMJAP_2884 PF00155 Aminotransferase class I and II AMJAP_2885 PF03960 ArsC family AMJAP_2886 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AMJAP_2886 PF14602 Hexapeptide repeat of succinyl-transferase AMJAP_2887 PF01546 Peptidase family M20/M25/M40 AMJAP_2887 PF07687 Peptidase dimerisation domain AMJAP_2888 PF13847 Methyltransferase domain AMJAP_2892 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2892 PF03466 LysR substrate binding domain AMJAP_2893 PF03601 Conserved hypothetical protein 698 AMJAP_2894 PF03449 Transcription elongation factor, N-terminal AMJAP_2894 PF01272 Transcription elongation factor, GreA/GreB, C-term AMJAP_2895 PF12833 Helix-turn-helix domain AMJAP_2895 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMJAP_2897 PF07044 Protein of unknown function (DUF1329) AMJAP_2900 PF02664 S-Ribosylhomocysteinase (LuxS) AMJAP_2902 PF05656 Protein of unknown function (DUF805) AMJAP_2906 PF02769 AIR synthase related protein, C-terminal domain AMJAP_2906 PF00586 AIR synthase related protein, N-terminal domain AMJAP_2908 PF01641 SelR domain AMJAP_2908 PF01625 Peptide methionine sulfoxide reductase AMJAP_2911 PF04336 Acyl carrier protein phosphodiesterase AMJAP_2912 PF02803 Thiolase, C-terminal domain AMJAP_2912 PF00108 Thiolase, N-terminal domain AMJAP_2913 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_2913 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMJAP_2913 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMJAP_2914 PF01553 Acyltransferase AMJAP_2915 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_2917 PF13193 AMP-binding enzyme C-terminal domain AMJAP_2917 PF00501 AMP-binding enzyme AMJAP_2919 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMJAP_2919 PF12806 Acetyl-CoA dehydrogenase C-terminal like AMJAP_2919 PF02770 Acyl-CoA dehydrogenase, middle domain AMJAP_2919 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMJAP_2923 PF13458 Periplasmic binding protein AMJAP_2924 PF02653 Branched-chain amino acid transport system / permease component AMJAP_2925 PF11862 Domain of unknown function (DUF3382) AMJAP_2925 PF02653 Branched-chain amino acid transport system / permease component AMJAP_2926 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMJAP_2926 PF00005 ABC transporter AMJAP_2927 PF00005 ABC transporter AMJAP_2928 PF00158 Sigma-54 interaction domain AMJAP_2928 PF13185 GAF domain AMJAP_2928 PF02954 Bacterial regulatory protein, Fis family AMJAP_2929 PF01144 Coenzyme A transferase AMJAP_2934 PF01042 Endoribonuclease L-PSP AMJAP_2935 PF13380 CoA binding domain AMJAP_2936 PF00899 ThiF family AMJAP_2937 PF17827 PrmC N-terminal domain AMJAP_2937 PF13847 Methyltransferase domain AMJAP_2938 PF00472 RF-1 domain AMJAP_2938 PF03462 PCRF domain AMJAP_2939 PF01488 Shikimate / quinate 5-dehydrogenase AMJAP_2939 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMJAP_2939 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMJAP_2941 PF03550 Outer membrane lipoprotein LolB AMJAP_2942 PF14572 Phosphoribosyl synthetase-associated domain AMJAP_2942 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMJAP_2943 PF01386 Ribosomal L25p family AMJAP_2943 PF14693 Ribosomal protein TL5, C-terminal domain AMJAP_2944 PF01195 Peptidyl-tRNA hydrolase AMJAP_2945 PF06071 Protein of unknown function (DUF933) AMJAP_2945 PF01926 50S ribosome-binding GTPase AMJAP_2950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMJAP_2951 PF01043 SecA preprotein cross-linking domain AMJAP_2951 PF07517 SecA DEAD-like domain AMJAP_2956 PF02321 Outer membrane efflux protein AMJAP_2957 PF08461 Ribonuclease R winged-helix domain AMJAP_2957 PF00575 S1 RNA binding domain AMJAP_2957 PF17876 Cold shock domain AMJAP_2957 PF08206 Ribonuclease B OB domain AMJAP_2957 PF00773 RNB domain AMJAP_2958 PF02355 Protein export membrane protein AMJAP_2958 PF07549 SecD/SecF GG Motif AMJAP_2959 PF07549 SecD/SecF GG Motif AMJAP_2959 PF13721 SecD export protein N-terminal TM region AMJAP_2959 PF02355 Protein export membrane protein AMJAP_2960 PF02699 Preprotein translocase subunit AMJAP_2961 PF01702 Queuine tRNA-ribosyltransferase AMJAP_2962 PF02547 Queuosine biosynthesis protein AMJAP_2965 PF00581 Rhodanese-like domain AMJAP_2965 PF17773 UPF0176 acylphosphatase like domain AMJAP_2966 PF00072 Response regulator receiver domain AMJAP_2966 PF00486 Transcriptional regulatory protein, C terminal AMJAP_2967 PF13426 PAS domain AMJAP_2967 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_2967 PF00672 HAMP domain AMJAP_2967 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_2968 PF00092 von Willebrand factor type A domain AMJAP_2969 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2969 PF03466 LysR substrate binding domain AMJAP_2970 PF00970 Oxidoreductase FAD-binding domain AMJAP_2970 PF00175 Oxidoreductase NAD-binding domain AMJAP_2971 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_2974 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMJAP_2977 PF05114 Protein of unknown function (DUF692) AMJAP_2980 PF16868 NMT1-like family AMJAP_2984 PF00378 Enoyl-CoA hydratase/isomerase AMJAP_2985 PF13607 Succinyl-CoA ligase like flavodoxin domain AMJAP_2985 PF13380 CoA binding domain AMJAP_2987 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_2987 PF03466 LysR substrate binding domain AMJAP_2988 PF00158 Sigma-54 interaction domain AMJAP_2988 PF02830 V4R domain AMJAP_2988 PF06505 Activator of aromatic catabolism AMJAP_2988 PF02954 Bacterial regulatory protein, Fis family AMJAP_2989 PF00296 Luciferase-like monooxygenase AMJAP_2994 PF01361 Tautomerase enzyme AMJAP_2997 PF07836 DmpG-like communication domain AMJAP_2997 PF00682 HMGL-like AMJAP_2998 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMJAP_2998 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation AMJAP_3000 PF00171 Aldehyde dehydrogenase family AMJAP_3001 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMJAP_3002 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJAP_3003 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMJAP_3004 PF13409 Glutathione S-transferase, N-terminal domain AMJAP_3005 PF03466 LysR substrate binding domain AMJAP_3005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_3006 PF00970 Oxidoreductase FAD-binding domain AMJAP_3006 PF00111 2Fe-2S iron-sulfur cluster binding domain AMJAP_3006 PF00175 Oxidoreductase NAD-binding domain AMJAP_3007 PF04663 Phenol hydroxylase conserved region AMJAP_3008 PF04945 YHS domain AMJAP_3008 PF02332 Methane/Phenol/Toluene Hydroxylase AMJAP_3009 PF02406 MmoB/DmpM family AMJAP_3010 PF02332 Methane/Phenol/Toluene Hydroxylase AMJAP_3011 PF06099 Phenol hydroxylase subunit AMJAP_3012 PF06505 Activator of aromatic catabolism AMJAP_3012 PF02830 V4R domain AMJAP_3012 PF00158 Sigma-54 interaction domain AMJAP_3012 PF02954 Bacterial regulatory protein, Fis family AMJAP_3013 PF03707 Bacterial signalling protein N terminal repeat AMJAP_3013 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_3013 PF00563 EAL domain AMJAP_3014 PF00756 Putative esterase AMJAP_3015 PF08240 Alcohol dehydrogenase GroES-like domain AMJAP_3015 PF00107 Zinc-binding dehydrogenase AMJAP_3016 PF03466 LysR substrate binding domain AMJAP_3016 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_3019 PF00664 ABC transporter transmembrane region AMJAP_3019 PF00005 ABC transporter AMJAP_3022 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_3023 PF00072 Response regulator receiver domain AMJAP_3023 PF00486 Transcriptional regulatory protein, C terminal AMJAP_3025 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_3025 PF00563 EAL domain AMJAP_3025 PF03707 Bacterial signalling protein N terminal repeat AMJAP_3026 PF01627 Hpt domain AMJAP_3026 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_3026 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_3026 PF00672 HAMP domain AMJAP_3026 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMJAP_3026 PF00072 Response regulator receiver domain AMJAP_3031 PF01678 Diaminopimelate epimerase AMJAP_3032 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_3033 PF03466 LysR substrate binding domain AMJAP_3033 PF00005 ABC transporter AMJAP_3035 PF17151 Periplasmic sensor domain AMJAP_3035 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_3036 PF01810 LysE type translocator AMJAP_3037 PF05175 Methyltransferase small domain AMJAP_3038 PF07715 TonB-dependent Receptor Plug Domain AMJAP_3038 PF00593 TonB dependent receptor AMJAP_3040 PF01627 Hpt domain AMJAP_3040 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_3040 PF00072 Response regulator receiver domain AMJAP_3040 PF00672 HAMP domain AMJAP_3040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_3040 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMJAP_3043 PF04893 Yip1 domain AMJAP_3044 PF01040 UbiA prenyltransferase family AMJAP_3045 PF02628 Cytochrome oxidase assembly protein AMJAP_3048 PF00510 Cytochrome c oxidase subunit III AMJAP_3049 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 AMJAP_3050 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJAP_3051 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AMJAP_3051 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AMJAP_3052 PF01794 Ferric reductase like transmembrane component AMJAP_3053 PF00174 Oxidoreductase molybdopterin binding domain AMJAP_3054 PF01066 CDP-alcohol phosphatidyltransferase AMJAP_3055 PF02568 Thiamine biosynthesis protein (ThiI) AMJAP_3055 PF00958 GMP synthase C terminal domain AMJAP_3055 PF00117 Glutamine amidotransferase class-I AMJAP_3056 PF01494 FAD binding domain AMJAP_3057 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMJAP_3057 PF03466 LysR substrate binding domain AMJAP_3061 PF10369 Small subunit of acetolactate synthase AMJAP_3062 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMJAP_3062 PF00205 Thiamine pyrophosphate enzyme, central domain AMJAP_3062 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMJAP_3064 PF00579 tRNA synthetases class I (W and Y) AMJAP_3065 PF01551 Peptidase family M23 AMJAP_3065 PF04225 Opacity-associated protein A LysM-like domain AMJAP_3066 PF03702 Anhydro-N-acetylmuramic acid kinase AMJAP_3067 PF03702 Anhydro-N-acetylmuramic acid kinase AMJAP_3068 PF01521 Iron-sulphur cluster biosynthesis AMJAP_3069 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMJAP_3069 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMJAP_3070 PF00654 Voltage gated chloride channel AMJAP_3071 PF02581 Thiamine monophosphate synthase AMJAP_3072 PF00202 Aminotransferase class-III AMJAP_3076 PF13545 Crp-like helix-turn-helix domain AMJAP_3076 PF00027 Cyclic nucleotide-binding domain AMJAP_3078 PF08406 CbbQ/NirQ/NorQ C-terminal AMJAP_3078 PF07728 AAA domain (dynein-related subfamily) AMJAP_3080 PF00510 Cytochrome c oxidase subunit III AMJAP_3082 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMJAP_3083 PF00034 Cytochrome c AMJAP_3086 PF14814 Bifunctional transglycosylase second domain AMJAP_3086 PF00905 Penicillin binding protein transpeptidase domain AMJAP_3086 PF00912 Transglycosylase AMJAP_3088 PF00005 ABC transporter AMJAP_3089 PF01032 FecCD transport family AMJAP_3090 PF03544 Gram-negative bacterial TonB protein C-terminal AMJAP_3092 PF03749 Sugar fermentation stimulation protein RE domain AMJAP_3092 PF17746 SfsA N-terminal OB domain AMJAP_3093 PF00155 Aminotransferase class I and II AMJAP_3094 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMJAP_3095 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMJAP_3097 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_3097 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_3098 PF02954 Bacterial regulatory protein, Fis family AMJAP_3098 PF00072 Response regulator receiver domain AMJAP_3098 PF00158 Sigma-54 interaction domain AMJAP_3099 PF01743 Poly A polymerase head domain AMJAP_3099 PF12627 Probable RNA and SrmB- binding site of polymerase A AMJAP_3099 PF12626 Polymerase A arginine-rich C-terminus AMJAP_3100 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMJAP_3101 PF02548 Ketopantoate hydroxymethyltransferase AMJAP_3102 PF02569 Pantoate-beta-alanine ligase AMJAP_3103 PF02803 Thiolase, C-terminal domain AMJAP_3103 PF00108 Thiolase, N-terminal domain AMJAP_3105 PF00849 RNA pseudouridylate synthase AMJAP_3105 PF01479 S4 domain AMJAP_3106 PF05175 Methyltransferase small domain AMJAP_3106 PF08468 Methyltransferase small domain N-terminal AMJAP_3109 PF02683 Cytochrome C biogenesis protein transmembrane region AMJAP_3109 PF00578 AhpC/TSA family AMJAP_3109 PF17991 Thioredoxin like C-terminal domain AMJAP_3112 PF00575 S1 RNA binding domain AMJAP_3112 PF03725 3' exoribonuclease family, domain 2 AMJAP_3112 PF01138 3' exoribonuclease family, domain 1 AMJAP_3112 PF00013 KH domain AMJAP_3112 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMJAP_3113 PF00312 Ribosomal protein S15 AMJAP_3114 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMJAP_3114 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMJAP_3114 PF09157 Pseudouridine synthase II TruB, C-terminal AMJAP_3115 PF02033 Ribosome-binding factor A AMJAP_3116 PF04760 Translation initiation factor IF-2, N-terminal region AMJAP_3116 PF08364 Bacterial translation initiation factor IF-2 associated region AMJAP_3116 PF00009 Elongation factor Tu GTP binding domain AMJAP_3116 PF11987 Translation-initiation factor 2 AMJAP_3117 PF00575 S1 RNA binding domain AMJAP_3117 PF08529 NusA N-terminal domain AMJAP_3117 PF13184 NusA-like KH domain AMJAP_3118 PF02576 RimP N-terminal domain AMJAP_3118 PF17384 RimP C-terminal SH3 domain AMJAP_3119 PF03840 Preprotein translocase SecG subunit AMJAP_3120 PF00121 Triosephosphate isomerase AMJAP_3121 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMJAP_3121 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMJAP_3121 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMJAP_3121 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMJAP_3122 PF00809 Pterin binding enzyme AMJAP_3123 PF00004 ATPase family associated with various cellular activities (AAA) AMJAP_3123 PF17862 AAA+ lid domain AMJAP_3123 PF01434 Peptidase family M41 AMJAP_3123 PF06480 FtsH Extracellular AMJAP_3124 PF01728 FtsJ-like methyltransferase AMJAP_3125 PF01985 CRS1 / YhbY (CRM) domain AMJAP_3126 PF03449 Transcription elongation factor, N-terminal AMJAP_3126 PF01272 Transcription elongation factor, GreA/GreB, C-term AMJAP_3127 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMJAP_3127 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMJAP_3127 PF02142 MGS-like domain AMJAP_3128 PF00117 Glutamine amidotransferase class-I AMJAP_3128 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMJAP_3130 PF10431 C-terminal, D2-small domain, of ClpB protein AMJAP_3130 PF02861 Clp amino terminal domain, pathogenicity island component AMJAP_3130 PF07724 AAA domain (Cdc48 subfamily) AMJAP_3130 PF00004 ATPase family associated with various cellular activities (AAA) AMJAP_3130 PF17871 AAA lid domain AMJAP_3131 PF17910 FeoB cytosolic helical domain AMJAP_3131 PF02421 Ferrous iron transport protein B AMJAP_3131 PF07664 Ferrous iron transport protein B C terminus AMJAP_3131 PF04023 FeoA domain AMJAP_3131 PF07670 Nucleoside recognition AMJAP_3133 PF02578 Multi-copper polyphenol oxidoreductase laccase AMJAP_3134 PF00849 RNA pseudouridylate synthase AMJAP_3134 PF01479 S4 domain AMJAP_3135 PF13525 Outer membrane lipoprotein AMJAP_3136 PF02540 NAD synthase AMJAP_3137 PF01266 FAD dependent oxidoreductase AMJAP_3138 PF07963 Prokaryotic N-terminal methylation motif AMJAP_3138 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor AMJAP_3139 PF05567 Neisseria PilC beta-propeller domain AMJAP_3143 PF00114 Pilin (bacterial filament) AMJAP_3143 PF07963 Prokaryotic N-terminal methylation motif AMJAP_3144 PF07963 Prokaryotic N-terminal methylation motif AMJAP_3145 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor AMJAP_3145 PF07963 Prokaryotic N-terminal methylation motif AMJAP_3146 PF05567 Neisseria PilC beta-propeller domain AMJAP_3150 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMJAP_3151 PF01252 Signal peptidase (SPase) II AMJAP_3152 PF06827 Zinc finger found in FPG and IleRS AMJAP_3152 PF08264 Anticodon-binding domain of tRNA AMJAP_3152 PF00133 tRNA synthetases class I (I, L, M and V) AMJAP_3153 PF01687 Riboflavin kinase AMJAP_3153 PF06574 FAD synthetase AMJAP_3154 PF03023 Lipid II flippase MurJ AMJAP_3155 PF01649 Ribosomal protein S20 AMJAP_3156 PF00696 Amino acid kinase family AMJAP_3156 PF01472 PUA domain AMJAP_3157 PF01018 GTP1/OBG AMJAP_3157 PF01926 50S ribosome-binding GTPase AMJAP_3158 PF01016 Ribosomal L27 protein AMJAP_3159 PF00829 Ribosomal prokaryotic L21 protein AMJAP_3160 PF00348 Polyprenyl synthetase AMJAP_3161 PF07977 FabA-like domain AMJAP_3162 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJAP_3162 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJAP_3164 PF01967 MoaC family AMJAP_3166 PF04055 Radical SAM superfamily AMJAP_3166 PF06463 Molybdenum Cofactor Synthesis C AMJAP_3168 PF04321 RmlD substrate binding domain AMJAP_3170 PF00563 EAL domain AMJAP_3170 PF03707 Bacterial signalling protein N terminal repeat AMJAP_3170 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_3171 PF00436 Single-strand binding protein family AMJAP_3172 PF17760 UvrA interaction domain AMJAP_3172 PF17755 UvrA DNA-binding domain AMJAP_3173 PF01196 Ribosomal protein L17 AMJAP_3174 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMJAP_3174 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMJAP_3174 PF01000 RNA polymerase Rpb3/RpoA insert domain AMJAP_3175 PF01479 S4 domain AMJAP_3175 PF00163 Ribosomal protein S4/S9 N-terminal domain AMJAP_3176 PF00411 Ribosomal protein S11 AMJAP_3177 PF00416 Ribosomal protein S13/S18 AMJAP_3178 PF00444 Ribosomal protein L36 AMJAP_3179 PF00344 SecY translocase AMJAP_3180 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMJAP_3181 PF00327 Ribosomal protein L30p/L7e AMJAP_3182 PF03719 Ribosomal protein S5, C-terminal domain AMJAP_3182 PF00333 Ribosomal protein S5, N-terminal domain AMJAP_3183 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMJAP_3184 PF00347 Ribosomal protein L6 AMJAP_3185 PF00410 Ribosomal protein S8 AMJAP_3186 PF00253 Ribosomal protein S14p/S29e AMJAP_3187 PF00673 ribosomal L5P family C-terminus AMJAP_3187 PF00281 Ribosomal protein L5 AMJAP_3188 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMJAP_3188 PF00467 KOW motif AMJAP_3189 PF00238 Ribosomal protein L14p/L23e AMJAP_3190 PF00366 Ribosomal protein S17 AMJAP_3191 PF00831 Ribosomal L29 protein AMJAP_3192 PF00252 Ribosomal protein L16p/L10e AMJAP_3193 PF00189 Ribosomal protein S3, C-terminal domain AMJAP_3193 PF07650 KH domain AMJAP_3194 PF00237 Ribosomal protein L22p/L17e AMJAP_3195 PF00203 Ribosomal protein S19 AMJAP_3196 PF03947 Ribosomal Proteins L2, C-terminal domain AMJAP_3196 PF00181 Ribosomal Proteins L2, RNA binding domain AMJAP_3197 PF00276 Ribosomal protein L23 AMJAP_3198 PF00573 Ribosomal protein L4/L1 family AMJAP_3199 PF00297 Ribosomal protein L3 AMJAP_3200 PF00338 Ribosomal protein S10p/S20e AMJAP_3201 PF03143 Elongation factor Tu C-terminal domain AMJAP_3201 PF00009 Elongation factor Tu GTP binding domain AMJAP_3201 PF03144 Elongation factor Tu domain 2 AMJAP_3202 PF03144 Elongation factor Tu domain 2 AMJAP_3202 PF00009 Elongation factor Tu GTP binding domain AMJAP_3202 PF03764 Elongation factor G, domain IV AMJAP_3202 PF14492 Elongation Factor G, domain II AMJAP_3202 PF00679 Elongation factor G C-terminus AMJAP_3203 PF00177 Ribosomal protein S7p/S5e AMJAP_3204 PF00164 Ribosomal protein S12/S23 AMJAP_3205 PF04983 RNA polymerase Rpb1, domain 3 AMJAP_3205 PF00623 RNA polymerase Rpb1, domain 2 AMJAP_3205 PF04997 RNA polymerase Rpb1, domain 1 AMJAP_3205 PF04998 RNA polymerase Rpb1, domain 5 AMJAP_3205 PF05000 RNA polymerase Rpb1, domain 4 AMJAP_3206 PF00562 RNA polymerase Rpb2, domain 6 AMJAP_3206 PF10385 RNA polymerase beta subunit external 1 domain AMJAP_3206 PF04563 RNA polymerase beta subunit AMJAP_3206 PF04561 RNA polymerase Rpb2, domain 2 AMJAP_3206 PF04565 RNA polymerase Rpb2, domain 3 AMJAP_3206 PF04560 RNA polymerase Rpb2, domain 7 AMJAP_3207 PF00542 Ribosomal protein L7/L12 C-terminal domain AMJAP_3207 PF16320 Ribosomal protein L7/L12 dimerisation domain AMJAP_3208 PF00466 Ribosomal protein L10 AMJAP_3209 PF00687 Ribosomal protein L1p/L10e family AMJAP_3210 PF00298 Ribosomal protein L11, RNA binding domain AMJAP_3210 PF03946 Ribosomal protein L11, N-terminal domain AMJAP_3211 PF02357 Transcription termination factor nusG AMJAP_3211 PF00467 KOW motif AMJAP_3212 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMJAP_3213 PF03144 Elongation factor Tu domain 2 AMJAP_3213 PF03143 Elongation factor Tu C-terminal domain AMJAP_3213 PF00009 Elongation factor Tu GTP binding domain AMJAP_3215 PF03309 Type III pantothenate kinase AMJAP_3216 PF08279 HTH domain AMJAP_3216 PF03099 Biotin/lipoate A/B protein ligase family AMJAP_3216 PF02237 Biotin protein ligase C terminal domain AMJAP_3217 PF00186 Dihydrofolate reductase AMJAP_3218 PF00303 Thymidylate synthase AMJAP_3219 PF00293 NUDIX domain AMJAP_3220 PF01790 Prolipoprotein diacylglyceryl transferase AMJAP_3222 PF01590 GAF domain AMJAP_3222 PF05524 PEP-utilising enzyme, N-terminal AMJAP_3222 PF00391 PEP-utilising enzyme, mobile domain AMJAP_3222 PF02896 PEP-utilising enzyme, TIM barrel domain AMJAP_3223 PF00293 NUDIX domain AMJAP_3226 PF00248 Aldo/keto reductase family AMJAP_3227 PF17785 PUA-like domain AMJAP_3227 PF10672 S-adenosylmethionine-dependent methyltransferase AMJAP_3228 PF01597 Glycine cleavage H-protein AMJAP_3229 PF01571 Aminomethyltransferase folate-binding domain AMJAP_3229 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMJAP_3230 PF01494 FAD binding domain AMJAP_3231 PF01494 FAD binding domain AMJAP_3232 PF05195 Aminopeptidase P, N-terminal domain AMJAP_3232 PF00557 Metallopeptidase family M24 AMJAP_3233 PF03695 Uncharacterised protein family (UPF0149) AMJAP_3235 PF05164 Cell division protein ZapA AMJAP_3236 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMJAP_3239 PF14698 Argininosuccinate lyase C-terminal AMJAP_3239 PF00206 Lyase AMJAP_3240 PF03900 Porphobilinogen deaminase, C-terminal domain AMJAP_3240 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMJAP_3241 PF02602 Uroporphyrinogen-III synthase HemD AMJAP_3242 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AMJAP_3243 PF07719 Tetratricopeptide repeat AMJAP_3243 PF07219 HemY protein N-terminus AMJAP_3245 PF00175 Oxidoreductase NAD-binding domain AMJAP_3246 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AMJAP_3247 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJAP_3247 PF07498 Rho termination factor, N-terminal domain AMJAP_3247 PF07497 Rho termination factor, RNA-binding domain AMJAP_3248 PF00085 Thioredoxin AMJAP_3249 PF02541 Ppx/GppA phosphatase family AMJAP_3250 PF01293 Phosphoenolpyruvate carboxykinase AMJAP_3251 PF01430 Hsp33 protein AMJAP_3252 PF01479 S4 domain AMJAP_3253 PF13419 Haloacid dehalogenase-like hydrolase AMJAP_3254 PF00293 NUDIX domain AMJAP_3255 PF00459 Inositol monophosphatase family AMJAP_3257 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMJAP_3257 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMJAP_3258 PF07730 Histidine kinase AMJAP_3258 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_3258 PF05231 MASE1 AMJAP_3259 PF13472 GDSL-like Lipase/Acylhydrolase family AMJAP_3260 PF00005 ABC transporter AMJAP_3263 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMJAP_3264 PF00291 Pyridoxal-phosphate dependent enzyme AMJAP_3264 PF00585 C-terminal regulatory domain of Threonine dehydratase AMJAP_3272 PF02954 Bacterial regulatory protein, Fis family AMJAP_3272 PF00072 Response regulator receiver domain AMJAP_3272 PF00158 Sigma-54 interaction domain AMJAP_3273 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_3274 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AMJAP_3275 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJAP_3276 PF00672 HAMP domain AMJAP_3276 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJAP_3277 PF02954 Bacterial regulatory protein, Fis family AMJAP_3277 PF00072 Response regulator receiver domain AMJAP_3277 PF00158 Sigma-54 interaction domain AMJAP_3278 PF02743 Cache domain AMJAP_3278 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_3278 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_3279 PF00224 Pyruvate kinase, barrel domain AMJAP_3279 PF02887 Pyruvate kinase, alpha/beta domain AMJAP_3280 PF04262 Glutamate-cysteine ligase AMJAP_3282 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AMJAP_3284 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_3284 PF05230 MASE2 domain AMJAP_3286 PF00005 ABC transporter AMJAP_3287 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_3288 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_3289 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMJAP_3290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMJAP_3290 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMJAP_3292 PF12848 ABC transporter AMJAP_3292 PF00005 ABC transporter AMJAP_3296 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_3296 PF00072 Response regulator receiver domain AMJAP_3297 PF02560 Cyanate lyase C-terminal domain AMJAP_3298 PF03793 PASTA domain AMJAP_3298 PF00069 Protein kinase domain AMJAP_3300 PF00156 Phosphoribosyl transferase domain AMJAP_3301 PF03372 Endonuclease/Exonuclease/phosphatase family AMJAP_3302 PF01138 3' exoribonuclease family, domain 1 AMJAP_3302 PF03725 3' exoribonuclease family, domain 2 AMJAP_3303 PF03755 YicC-like family, N-terminal region AMJAP_3303 PF08340 Domain of unknown function (DUF1732) AMJAP_3304 PF00625 Guanylate kinase AMJAP_3305 PF01192 RNA polymerase Rpb6 AMJAP_3306 PF04607 Region found in RelA / SpoT proteins AMJAP_3306 PF02824 TGS domain AMJAP_3306 PF13291 ACT domain AMJAP_3307 PF00902 Sec-independent protein translocase protein (TatC) AMJAP_3308 PF02416 mttA/Hcf106 family AMJAP_3309 PF02416 mttA/Hcf106 family AMJAP_3310 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMJAP_3311 PF01502 Phosphoribosyl-AMP cyclohydrolase AMJAP_3312 PF03109 ABC1 family AMJAP_3313 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_3315 PF00034 Cytochrome c AMJAP_3316 PF01926 50S ribosome-binding GTPase AMJAP_3317 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMJAP_3317 PF00476 DNA polymerase family A AMJAP_3317 PF01612 3'-5' exonuclease AMJAP_3317 PF01367 5'-3' exonuclease, C-terminal SAM fold AMJAP_3319 PF01636 Phosphotransferase enzyme family AMJAP_3320 PF00580 UvrD/REP helicase N-terminal domain AMJAP_3320 PF13361 UvrD-like helicase C-terminal domain AMJAP_3321 PF07670 Nucleoside recognition AMJAP_3323 PF12849 PBP superfamily domain AMJAP_3324 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_3325 PF00528 Binding-protein-dependent transport system inner membrane component AMJAP_3326 PF00005 ABC transporter AMJAP_3327 PF01895 PhoU domain AMJAP_3328 PF00563 EAL domain AMJAP_3328 PF00990 Diguanylate cyclase, GGDEF domain AMJAP_3328 PF00360 Phytochrome region AMJAP_3328 PF01590 GAF domain AMJAP_3330 PF04345 Chorismate lyase AMJAP_3331 PF01040 UbiA prenyltransferase family AMJAP_3332 PF00072 Response regulator receiver domain AMJAP_3332 PF00486 Transcriptional regulatory protein, C terminal AMJAP_3333 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_3333 PF00512 His Kinase A (phospho-acceptor) domain AMJAP_3333 PF00989 PAS fold AMJAP_3333 PF11808 Phosphate regulon sensor protein PhoR AMJAP_3336 PF00698 Acyl transferase domain AMJAP_3336 PF08240 Alcohol dehydrogenase GroES-like domain AMJAP_3336 PF08990 Erythronolide synthase docking AMJAP_3336 PF00109 Beta-ketoacyl synthase, N-terminal domain AMJAP_3336 PF16197 Ketoacyl-synthetase C-terminal extension AMJAP_3336 PF08659 KR domain AMJAP_3336 PF14765 Polyketide synthase dehydratase AMJAP_3336 PF02801 Beta-ketoacyl synthase, C-terminal domain AMJAP_3336 PF00550 Phosphopantetheine attachment site AMJAP_3338 PF01584 CheW-like domain AMJAP_3338 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMJAP_3338 PF01627 Hpt domain AMJAP_3338 PF00072 Response regulator receiver domain AMJAP_3339 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMJAP_3339 PF12729 Four helix bundle sensory module for signal transduction AMJAP_3339 PF00672 HAMP domain AMJAP_3341 PF00072 Response regulator receiver domain AMJAP_3342 PF00072 Response regulator receiver domain AMJAP_3347 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AMJAP_3348 PF03480 Bacterial extracellular solute-binding protein, family 7 AMJAP_3349 PF01418 Helix-turn-helix domain, rpiR family AMJAP_3349 PF01380 SIS domain AMJAP_3349 PF02685 Glucokinase AMJAP_3351 PF01645 Conserved region in glutamate synthase AMJAP_3354 PF01380 SIS domain AMJAP_3355 PF14602 Hexapeptide repeat of succinyl-transferase AMJAP_3355 PF00132 Bacterial transferase hexapeptide (six repeats) AMJAP_3355 PF12804 MobA-like NTP transferase domain AMJAP_3357 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMJAP_3357 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMJAP_3358 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJAP_3358 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMJAP_3359 PF00231 ATP synthase AMJAP_3360 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMJAP_3360 PF00306 ATP synthase alpha/beta chain, C terminal domain AMJAP_3360 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMJAP_3361 PF00213 ATP synthase delta (OSCP) subunit AMJAP_3362 PF00430 ATP synthase B/B' CF(0) AMJAP_3363 PF00137 ATP synthase subunit C AMJAP_3364 PF00119 ATP synthase A chain AMJAP_3366 PF02195 ParB-like nuclease domain AMJAP_3366 PF17762 HTH domain found in ParB protein AMJAP_3367 PF13614 AAA domain AMJAP_3368 PF02527 rRNA small subunit methyltransferase G AMJAP_3369 PF01134 Glucose inhibited division protein A AMJAP_3369 PF13932 GidA associated domain AMJAP_3370 PF00085 Thioredoxin AMJAP_3371 PF01926 50S ribosome-binding GTPase AMJAP_3371 PF12631 MnmE helical domain AMJAP_3371 PF10396 GTP-binding protein TrmE N-terminus AMJAP_3372 PF02096 60Kd inner membrane protein AMJAP_3372 PF14849 YidC periplasmic domain AMJAP_3373 PF00825 Ribonuclease P AMJAP_3374 PF00468 Ribosomal protein L34