locus-tag	class	description
AMJAP_0001	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
AMJAP_0002	COG0592	DNA-directed DNA polymerase activity
AMJAP_0003	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AMJAP_0020	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
AMJAP_0021	COG0751	glycine-tRNA ligase activity
AMJAP_0022	COG0752	glycyl-tRNA synthetase alpha subunit
AMJAP_0025	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AMJAP_0026	COG0569	domain protein
AMJAP_0027	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AMJAP_0029	COG0242	peptide deformylase activity
AMJAP_0031	COG0758	DNA mediated transformation
AMJAP_0032	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AMJAP_0033	COG0009	L-threonylcarbamoyladenylate synthase
AMJAP_0034	COG0408	coproporphyrinogen oxidase activity
AMJAP_0035	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AMJAP_0036	COG1067	ATP-dependent peptidase activity
AMJAP_0045	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AMJAP_0046	COG0339	signal peptide processing
AMJAP_0047	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
AMJAP_0048	COG0519	Catalyzes the synthesis of GMP from XMP
AMJAP_0051	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AMJAP_0053	COG0735	belongs to the Fur family
AMJAP_0054	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
AMJAP_0057	COG0583	DNA-binding transcription factor activity
AMJAP_0064	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AMJAP_0064	COG0678	peroxiredoxin activity
AMJAP_0065	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AMJAP_0067	COG2217	Heavy metal translocating P-type atpase
AMJAP_0068	COG0789	Transcriptional regulator
AMJAP_0071	COG2252	PERMEase
AMJAP_0074	COG3829	transcription factor binding
AMJAP_0077	COG0577	efflux transmembrane transporter activity
AMJAP_0077	COG1136	(ABC) transporter
AMJAP_0080	COG2509	5-formyltetrahydrofolate cyclo-ligase activity
AMJAP_0084	COG2759	Belongs to the formate--tetrahydrofolate ligase family
AMJAP_0086	COG2207	Transcriptional regulator
AMJAP_0089	COG2207	Transcriptional regulator
AMJAP_0094	COG0589	response to stress
AMJAP_0095	COG2902	Dehydrogenase
AMJAP_0099	COG2204	response regulator
AMJAP_0100	COG4191	Histidine kinase
AMJAP_0102	COG0471	metal ion transport
AMJAP_0102	COG3273	potassium ion transport
AMJAP_0104	COG0247	lactate metabolic process
AMJAP_0105	COG0277	FAD linked oxidase domain protein
AMJAP_0106	COG0277	FAD linked oxidase domain protein
AMJAP_0108	COG0583	DNA-binding transcription factor activity
AMJAP_0113	COG1194	a g-specific adenine glycosylase
AMJAP_0115	COG0131	Imidazoleglycerol-phosphate dehydratase
AMJAP_0116	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
AMJAP_0117	COG0107	imidazoleglycerol-phosphate synthase activity
AMJAP_0118	COG1448	Aminotransferase
AMJAP_0120	COG1522	sequence-specific DNA binding
AMJAP_0121	COG3706	GGDEF domain
AMJAP_0123	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
AMJAP_0130	COG0702	epimerase
AMJAP_0131	COG0583	DNA-binding transcription factor activity
AMJAP_0132	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AMJAP_0135	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
AMJAP_0136	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
AMJAP_0137	COG0501	Belongs to the peptidase M48B family
AMJAP_0138	COG1012	belongs to the aldehyde dehydrogenase family
AMJAP_0139	COG0742	ribosomal rna small subunit methyltransferase
AMJAP_0141	COG0552	protein localization to endoplasmic reticulum
AMJAP_0142	COG2884	Cell division ATP-binding protein ftsE
AMJAP_0143	COG2177	Part of the ABC transporter FtsEX involved in
AMJAP_0145	COG2363	Small membrane protein
AMJAP_0148	COG0220	tRNA (guanine-N7-)-methyltransferase activity
AMJAP_0154	COG0745	RESPONSE REGULATOR receiver
AMJAP_0156	COG5001	Diguanylate cyclase
AMJAP_0156	COG5002	protein histidine kinase activity
AMJAP_0157	COG3724	N-succinylarginine dihydrolase activity
AMJAP_0158	COG1012	belongs to the aldehyde dehydrogenase family
AMJAP_0162	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMJAP_0164	COG0004	ammonium transporteR
AMJAP_0166	COG2960	long-chain fatty acid transporting porin activity
AMJAP_0167	COG2205	protein histidine kinase activity
AMJAP_0173	COG0564	pseudouridine synthase activity
AMJAP_0175	COG2989	Protein conserved in bacteria
AMJAP_0177	COG2207	Transcriptional regulator
AMJAP_0178	COG1024	Enoyl-CoA hydratase
AMJAP_0182	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMJAP_0183	COG0671	phosphoesterase, PA-phosphatase related
AMJAP_0184	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AMJAP_0186	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AMJAP_0196	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AMJAP_0196	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AMJAP_0198	COG0306	phosphate transporter
AMJAP_0199	COG1392	Phosphate transport regulator
AMJAP_0201	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AMJAP_0202	COG0859	PFAM glycosyl transferase family 9
AMJAP_0204	COG0463	Glycosyl transferase, family 2
AMJAP_0208	COG0463	Glycosyl transferase, family 2
AMJAP_0208	COG1216	Glycosyl transferase, family 2
AMJAP_0209	COG1560	Kdo2-lipid A biosynthetic process
AMJAP_0210	COG1132	(ABC) transporter
AMJAP_0213	COG0656	L-ascorbic acid biosynthetic process
AMJAP_0215	COG1519	Transferase
AMJAP_0216	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AMJAP_0217	COG1965	Belongs to the frataxin family
AMJAP_0219	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AMJAP_0226	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_0228	COG2030	dehydratase
AMJAP_0231	COG4191	Histidine kinase
AMJAP_0232	COG4566	intracellular signal transduction
AMJAP_0235	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AMJAP_0236	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AMJAP_0238	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMJAP_0238	COG2813	Specifically methylates the guanine in position
AMJAP_0239	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
AMJAP_0240	COG1872	DUF167
AMJAP_0247	COG0540	Belongs to the ATCase OTCase family
AMJAP_0249	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
AMJAP_0250	COG1678	Uncharacterized ACR, COG1678
AMJAP_0252	COG0189	ligase activity
AMJAP_0253	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AMJAP_0254	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
AMJAP_0255	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AMJAP_0257	COG0126	phosphoglycerate kinase activity
AMJAP_0260	COG0583	DNA-binding transcription factor activity
AMJAP_0265	COG1573	uracil-dna glycosylase
AMJAP_0267	COG0583	DNA-binding transcription factor activity
AMJAP_0273	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMJAP_0274	COG0513	Belongs to the DEAD box helicase family
AMJAP_0276	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
AMJAP_0279	COG1511	domain protein
AMJAP_0279	COG3264	Mechanosensitive ion channel
AMJAP_0281	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMJAP_0283	COG0583	DNA-binding transcription factor activity
AMJAP_0284	COG2814	Major facilitator Superfamily
AMJAP_0285	COG0179	Fumarylacetoacetate (FAA) hydrolase
AMJAP_0286	COG1981	membrane
AMJAP_0288	COG2226	methyltransferase
AMJAP_0290	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
AMJAP_0291	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
AMJAP_0293	COG0018	arginyl-trna synthetase
AMJAP_0294	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AMJAP_0295	COG0254	rRNA binding
AMJAP_0296	COG0281	malic enzyme
AMJAP_0304	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
AMJAP_0306	COG0067	glutamate synthase
AMJAP_0306	COG0069	glutamate synthase activity
AMJAP_0306	COG0070	glutamate synthase
AMJAP_0307	COG0493	'glutamate synthase
AMJAP_0308	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
AMJAP_0309	COG0288	reversible hydration of carbon dioxide
AMJAP_0310	COG2873	o-acetylhomoserine
AMJAP_0311	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
AMJAP_0313	COG0488	(ABC) transporter
AMJAP_0314	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AMJAP_0315	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
AMJAP_0316	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMJAP_0316	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AMJAP_0320	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AMJAP_0321	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AMJAP_0322	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AMJAP_0326	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
AMJAP_0327	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
AMJAP_0328	COG0142	geranyltranstransferase activity
AMJAP_0329	COG1722	exodeoxyribonuclease VII activity
AMJAP_0330	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AMJAP_0331	COG1360	Flagellar Motor Protein
AMJAP_0338	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMJAP_0340	COG2010	Cytochrome c
AMJAP_0343	COG0733	neurotransmitter:sodium symporter activity
AMJAP_0350	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
AMJAP_0351	COG0733	neurotransmitter:sodium symporter activity
AMJAP_0352	COG2867	negative regulation of translational initiation
AMJAP_0353	COG2914	Belongs to the UPF0125 (RnfH) family
AMJAP_0355	COG0735	belongs to the Fur family
AMJAP_0356	COG0497	DNA recombination
AMJAP_0357	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
AMJAP_0358	COG0443	Heat shock 70 kDa protein
AMJAP_0359	COG0484	heat shock protein binding
AMJAP_0360	COG1045	serine acetyltransferase
AMJAP_0361	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
AMJAP_0364	COG2095	MarC family integral membrane protein
AMJAP_0370	COG0811	peptide transport
AMJAP_0374	COG0494	nUDIX hydrolase
AMJAP_0377	COG0011	TIGRFAM Protein of
AMJAP_0378	COG4536	flavin adenine dinucleotide binding
AMJAP_0380	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AMJAP_0381	COG0228	four-way junction DNA binding
AMJAP_0382	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
AMJAP_0383	COG0336	Belongs to the RNA methyltransferase TrmD family
AMJAP_0384	COG0335	large ribosomal subunit rRNA binding
AMJAP_0386	COG4974	Belongs to the 'phage' integrase family
AMJAP_0387	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AMJAP_0393	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
AMJAP_0395	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AMJAP_0402	COG0494	nUDIX hydrolase
AMJAP_0403	COG3151	Protein conserved in bacteria
AMJAP_0404	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AMJAP_0405	COG3150	esterase
AMJAP_0411	COG1280	lysine exporter protein (LysE YggA)
AMJAP_0412	COG0730	response to heat
AMJAP_0414	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
AMJAP_0415	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
AMJAP_0417	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
AMJAP_0418	COG0768	penicillin binding
AMJAP_0419	COG0772	Belongs to the SEDS family
AMJAP_0420	COG2951	lytic endotransglycosylase activity
AMJAP_0421	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AMJAP_0422	COG1686	Belongs to the peptidase S11 family
AMJAP_0425	COG0321	lipoyl(octanoyl) transferase activity
AMJAP_0426	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AMJAP_0428	COG0463	Glycosyl transferase, family 2
AMJAP_0429	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AMJAP_0430	COG0671	phosphoesterase, PA-phosphatase related
AMJAP_0434	COG0583	DNA-binding transcription factor activity
AMJAP_0436	COG1466	dna polymerase III delta subunit
AMJAP_0438	COG0495	leucyl-tRNA aminoacylation
AMJAP_0440	COG0815	Transfers the fatty acyl group on membrane lipoproteins
AMJAP_0441	COG4535	Mg2 and Co2 transporter CorC
AMJAP_0442	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
AMJAP_0443	COG1702	phosphate starvation-inducible protein PhoH
AMJAP_0444	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AMJAP_0446	COG3152	Membrane
AMJAP_0447	COG5002	protein histidine kinase activity
AMJAP_0447	COG5001	Diguanylate cyclase
AMJAP_0449	COG1509	lysine 2,3-aminomutase activity
AMJAP_0450	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMJAP_0455	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AMJAP_0457	COG0456	acetyltransferase
AMJAP_0459	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
AMJAP_0462	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
AMJAP_0463	COG0084	hydrolase, TatD family'
AMJAP_0466	COG2885	chlorophyll binding
AMJAP_0472	COG0024	Methionine aminopeptidase
AMJAP_0473	COG0052	Belongs to the universal ribosomal protein uS2 family
AMJAP_0474	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
AMJAP_0475	COG0528	UMP kinase activity
AMJAP_0476	COG0233	cytoplasmic translational termination
AMJAP_0483	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMJAP_0484	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMJAP_0485	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMJAP_0486	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
AMJAP_0487	COG0587	DNA-directed DNA polymerase activity
AMJAP_0489	COG0037	tRNA processing
AMJAP_0491	COG0148	phosphopyruvate hydratase activity
AMJAP_0492	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AMJAP_0493	COG0585	pseudouridine synthase activity
AMJAP_0494	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
AMJAP_0495	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
AMJAP_0499	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
AMJAP_0500	COG1215	transferase activity, transferring glycosyl groups
AMJAP_0511	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
AMJAP_0513	COG0438	transferase activity, transferring glycosyl groups
AMJAP_0513	COG1216	Glycosyl transferase, family 2
AMJAP_0516	COG0300	oxidoreductase activity
AMJAP_0518	COG0156	8-amino-7-oxononanoate synthase activity
AMJAP_0519	COG0604	alcohol dehydrogenase
AMJAP_0519	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_0519	COG3321	synthase
AMJAP_0522	COG1546	Belongs to the CinA family
AMJAP_0523	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
AMJAP_0524	COG2137	regulation of response to DNA damage stimulus
AMJAP_0525	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
AMJAP_0526	COG0527	aspartate kinase activity
AMJAP_0527	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
AMJAP_0529	COG2274	protein secretion by the type I secretion system
AMJAP_0530	COG2274	protein secretion by the type I secretion system
AMJAP_0532	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMJAP_0532	COG0301	tRNA thio-modification
AMJAP_0535	COG1883	Na -transporting methylmalonyl-CoA oxaloacetate decarboxylase, beta subunit
AMJAP_0536	COG0123	including yeast histone deacetylase and acetoin utilization protein
AMJAP_0537	COG0745	RESPONSE REGULATOR receiver
AMJAP_0542	COG0784	Response regulator, receiver
AMJAP_0542	COG0835	chemotaxis
AMJAP_0543	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AMJAP_0544	COG1815	bacterial-type flagellum-dependent cell motility
AMJAP_0545	COG1558	bacterial-type flagellum-dependent cell motility
AMJAP_0546	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AMJAP_0548	COG4787	bacterial-type flagellum-dependent cell motility
AMJAP_0550	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
AMJAP_0551	COG1706	bacterial-type flagellum-dependent cell motility
AMJAP_0562	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMJAP_0565	COG2205	protein histidine kinase activity
AMJAP_0565	COG0784	Response regulator, receiver
AMJAP_0567	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AMJAP_0569	COG2176	DNA-directed DNA polymerase activity
AMJAP_0570	COG1677	Flagellar hook-basal body complex protein FliE
AMJAP_0572	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AMJAP_0576	COG3144	bacterial-type flagellum assembly
AMJAP_0582	COG1987	bacterial-type flagellum assembly
AMJAP_0583	COG1684	flagellar biosynthetic protein fliR
AMJAP_0590	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
AMJAP_0591	COG0643	Histidine kinase
AMJAP_0591	COG2198	Histidine kinase
AMJAP_0592	COG2201	protein-glutamate methylesterase activity
AMJAP_0593	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AMJAP_0594	COG1360	Flagellar Motor Protein
AMJAP_0595	COG1192	Involved in chromosome partitioning
AMJAP_0598	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AMJAP_0600	COG4133	protoheme IX ABC transporter activity
AMJAP_0601	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AMJAP_0604	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
AMJAP_0605	COG1138	Cytochrome C-type biogenesis protein
AMJAP_0610	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
AMJAP_0615	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJAP_0615	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
AMJAP_0616	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
AMJAP_0619	COG1215	transferase activity, transferring glycosyl groups
AMJAP_0624	COG1215	transferase activity, transferring glycosyl groups
AMJAP_0628	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AMJAP_0631	COG0358	DNA primase activity
AMJAP_0633	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AMJAP_0634	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AMJAP_0635	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
AMJAP_0639	COG1704	LemA family
AMJAP_0640	COG0501	Belongs to the peptidase M48B family
AMJAP_0641	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_0642	COG0617	tRNA 3'-terminal CCA addition
AMJAP_0643	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMJAP_0644	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AMJAP_0645	COG2967	ApaG domain
AMJAP_0646	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AMJAP_0649	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
AMJAP_0650	COG3178	'Phosphotransferase
AMJAP_0651	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AMJAP_0652	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AMJAP_0654	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AMJAP_0655	COG0546	phosphoglycolate phosphatase activity
AMJAP_0656	COG0583	DNA-binding transcription factor activity
AMJAP_0685	COG0515	serine threonine protein kinase
AMJAP_0687	COG0523	cobalamin synthesis protein
AMJAP_0690	COG4176	ABC-type proline glycine betaine transport system permease component
AMJAP_0691	COG3448	diguanylate cyclase activity
AMJAP_0691	COG4175	Glycine betaine
AMJAP_0692	COG3739	integral membrane protein
AMJAP_0697	COG1012	belongs to the aldehyde dehydrogenase family
AMJAP_0699	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AMJAP_0702	COG4628	conserved protein (DUF2132)
AMJAP_0704	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AMJAP_0712	COG0512	Glutamine amidotransferase of anthranilate synthase
AMJAP_0713	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AMJAP_0714	COG0134	indole-3-glycerol-phosphate synthase activity
AMJAP_0715	COG1765	OsmC-like protein
AMJAP_0716	COG1335	isochorismatase
AMJAP_0717	COG4977	sequence-specific DNA binding
AMJAP_0719	COG0360	Binds together with S18 to 16S ribosomal RNA
AMJAP_0720	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
AMJAP_0721	COG0359	binds to the 23S rRNA
AMJAP_0722	COG0305	Participates in initiation and elongation during chromosome replication
AMJAP_0724	COG2226	methyltransferase
AMJAP_0727	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMJAP_0729	COG1720	tRNA m6t6A37 methyltransferase activity
AMJAP_0731	COG1040	competence protein
AMJAP_0733	COG0156	8-amino-7-oxononanoate synthase activity
AMJAP_0734	COG0596	Alpha beta hydrolase
AMJAP_0735	COG1073	alpha beta
AMJAP_0735	COG2226	methyltransferase
AMJAP_0736	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
AMJAP_0742	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMJAP_0747	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AMJAP_0747	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_0748	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJAP_0749	COG3383	formate dehydrogenase (NAD+) activity
AMJAP_0751	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJAP_0752	COG0251	oxidation-reduction process
AMJAP_0753	COG0596	Alpha beta hydrolase
AMJAP_0754	COG0545	Peptidyl-prolyl cis-trans isomerase
AMJAP_0756	COG1570	exodeoxyribonuclease VII activity
AMJAP_0758	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMJAP_0758	COG0519	Catalyzes the synthesis of GMP from XMP
AMJAP_0759	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMJAP_0760	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AMJAP_0760	COG2755	lipolytic protein G-D-S-L family
AMJAP_0762	COG2866	Carboxypeptidase
AMJAP_0763	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
AMJAP_0768	COG2350	Protein conserved in bacteria
AMJAP_0769	COG2917	probably involved in intracellular septation
AMJAP_0770	COG0613	PHP domain protein
AMJAP_0771	COG0009	L-threonylcarbamoyladenylate synthase
AMJAP_0774	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_0776	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AMJAP_0778	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AMJAP_0780	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMJAP_0781	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
AMJAP_0782	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
AMJAP_0784	COG0776	regulation of translation
AMJAP_0786	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
AMJAP_0788	COG1555	photosystem II stabilization
AMJAP_0790	COG1490	D-aminoacyl-tRNA deacylase activity
AMJAP_0792	COG1217	gtp-binding protein TYPA
AMJAP_0793	COG0174	glutamine synthetase
AMJAP_0794	COG3852	Histidine kinase
AMJAP_0795	COG2204	response regulator
AMJAP_0796	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AMJAP_0797	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
AMJAP_0798	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AMJAP_0799	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMJAP_0800	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
AMJAP_0801	COG4942	peptidase
AMJAP_0802	COG0793	Belongs to the peptidase S41A family
AMJAP_0805	COG1309	transcriptional regulator
AMJAP_0806	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
AMJAP_0807	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMJAP_0808	COG0756	dUTP diphosphatase activity
AMJAP_0809	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AMJAP_0810	COG2003	Belongs to the UPF0758 family
AMJAP_0811	COG0227	Belongs to the bacterial ribosomal protein bL28 family
AMJAP_0812	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AMJAP_0813	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AMJAP_0816	COG0671	phosphoesterase, PA-phosphatase related
AMJAP_0818	COG0351	phosphomethylpyrimidine kinase
AMJAP_0819	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
AMJAP_0823	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJAP_0825	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AMJAP_0826	COG0095	Lipoate-protein ligase
AMJAP_0827	COG0205	6-phosphofructokinase activity
AMJAP_0833	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
AMJAP_0834	COG3647	Membrane
AMJAP_0838	COG0277	FAD linked oxidase domain protein
AMJAP_0839	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_0841	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AMJAP_0842	COG2186	Transcriptional regulator
AMJAP_0844	COG0508	dehydrogenase complex catalyzes the overall conversion of
AMJAP_0847	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
AMJAP_0854	COG0438	transferase activity, transferring glycosyl groups
AMJAP_0863	COG0175	sulfate reduction
AMJAP_0864	COG3273	potassium ion transport
AMJAP_0864	COG0471	metal ion transport
AMJAP_0866	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AMJAP_0869	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AMJAP_0872	COG0166	Belongs to the GPI family
AMJAP_0873	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AMJAP_0876	COG0489	protein tyrosine kinase activity
AMJAP_0879	COG0521	Mo-molybdopterin cofactor biosynthetic process
AMJAP_0880	COG0303	'Molybdopterin
AMJAP_0881	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AMJAP_0882	COG0746	molybdenum cofactor guanylyltransferase activity
AMJAP_0884	COG1346	cytolysis
AMJAP_0885	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
AMJAP_0886	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
AMJAP_0887	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
AMJAP_0888	COG0723	plastoquinol--plastocyanin reductase activity
AMJAP_0889	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AMJAP_0890	COG2857	Cytochrome c1
AMJAP_0891	COG0625	glutathione transferase activity
AMJAP_0892	COG2969	positive regulation of protein catabolic process
AMJAP_0893	COG2823	Periplasmic or secreted lipoprotein
AMJAP_0894	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
AMJAP_0895	COG0792	nuclease activity
AMJAP_0902	COG2192	nodulation
AMJAP_0903	COG2001	Belongs to the MraZ family
AMJAP_0904	COG0275	rRNA processing
AMJAP_0907	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
AMJAP_0908	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AMJAP_0909	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AMJAP_0910	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AMJAP_0911	COG0772	Belongs to the SEDS family
AMJAP_0912	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AMJAP_0913	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMJAP_0914	COG1181	Belongs to the D-alanine--D-alanine ligase family
AMJAP_0918	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
AMJAP_0919	COG0653	protein targeting
AMJAP_0921	COG0352	thiamine-phosphate diphosphorylase activity
AMJAP_0922	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
AMJAP_0923	COG0237	dephospho-CoA kinase activity
AMJAP_0924	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
AMJAP_0927	COG4969	Belongs to the N-Me-Phe pilin family
AMJAP_0930	COG3023	N-Acetylmuramoyl-L-alanine amidase
AMJAP_0931	COG3725	Membrane protein required for beta-lactamase induction
AMJAP_0932	COG3842	ATPase activity
AMJAP_0933	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
AMJAP_0934	COG1840	ABC-type Fe3 transport system, periplasmic component
AMJAP_0936	COG0534	Mate efflux family protein
AMJAP_0937	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_0939	COG3012	SEC-C Motif Domain Protein
AMJAP_0940	COG2925	Exonuclease
AMJAP_0942	COG1025	Belongs to the peptidase M16 family
AMJAP_0944	COG0569	domain protein
AMJAP_0947	COG3022	response to hydroperoxide
AMJAP_0948	COG0180	Tryptophanyl-tRNA synthetase
AMJAP_0950	COG2315	Protein conserved in bacteria
AMJAP_0951	COG2837	iron assimilation
AMJAP_0953	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AMJAP_0957	COG2877	3-deoxy-8-phosphooctulonate synthase activity
AMJAP_0959	COG0748	coenzyme F420 binding
AMJAP_0966	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMJAP_0967	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AMJAP_0968	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AMJAP_0970	COG4628	conserved protein (DUF2132)
AMJAP_0972	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AMJAP_0975	COG4660	Part of a membrane complex involved in electron transport
AMJAP_0976	COG4659	FMN binding
AMJAP_0977	COG4658	electron transport chain
AMJAP_0979	COG2878	Part of a membrane complex involved in electron transport
AMJAP_0980	COG4657	Part of a membrane complex involved in electron transport
AMJAP_0982	COG0175	sulfate reduction
AMJAP_0983	COG0730	response to heat
AMJAP_0984	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMJAP_0986	COG0175	sulfate reduction
AMJAP_0991	COG2827	Endonuclease containing a URI domain
AMJAP_0992	COG0418	dihydroorotase activity
AMJAP_0993	COG0252	asparaginase activity
AMJAP_0996	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
AMJAP_0998	COG1794	racemase activity, acting on amino acids and derivatives
AMJAP_1000	COG1686	Belongs to the peptidase S11 family
AMJAP_1002	COG0436	Aminotransferase
AMJAP_1003	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMJAP_1007	COG1643	Atp-dependent helicase
AMJAP_1009	COG1741	Belongs to the pirin family
AMJAP_1011	COG0069	glutamate synthase activity
AMJAP_1012	COG1741	Belongs to the pirin family
AMJAP_1013	COG0583	DNA-binding transcription factor activity
AMJAP_1014	COG0435	Glutathione S-transferase
AMJAP_1019	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_1023	COG1187	pseudouridine synthase activity
AMJAP_1026	COG0077	Prephenate dehydratase
AMJAP_1026	COG1605	Chorismate mutase
AMJAP_1027	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AMJAP_1035	COG0438	transferase activity, transferring glycosyl groups
AMJAP_1036	COG1522	sequence-specific DNA binding
AMJAP_1037	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AMJAP_1038	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AMJAP_1041	COG0513	Belongs to the DEAD box helicase family
AMJAP_1042	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AMJAP_1043	COG0513	Belongs to the DEAD box helicase family
AMJAP_1044	COG2863	cytochrome
AMJAP_1047	COG3901	Regulator of nitric oxide reductase transcription
AMJAP_1047	COG0348	domain, Protein
AMJAP_1055	COG0488	(ABC) transporter
AMJAP_1059	COG2199	diguanylate cyclase activity
AMJAP_1061	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJAP_1063	COG3577	Aspartyl protease
AMJAP_1066	COG3510	cephalosporin hydroxylase
AMJAP_1068	COG3706	GGDEF domain
AMJAP_1070	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AMJAP_1071	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AMJAP_1072	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
AMJAP_1075	COG2983	Belongs to the UPF0260 family
AMJAP_1078	COG0793	Belongs to the peptidase S41A family
AMJAP_1079	COG0545	Peptidyl-prolyl cis-trans isomerase
AMJAP_1080	COG1362	aminopeptidase activity
AMJAP_1081	COG1187	pseudouridine synthase activity
AMJAP_1082	COG0653	protein targeting
AMJAP_1088	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
AMJAP_1090	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMJAP_1092	COG3842	ATPase activity
AMJAP_1093	COG0557	exoribonuclease II activity
AMJAP_1094	COG3706	GGDEF domain
AMJAP_1094	COG4251	negative regulation of phosphorylation
AMJAP_1094	COG5001	Diguanylate cyclase
AMJAP_1094	COG2203	Gaf domain
AMJAP_1103	COG1944	ATP diphosphatase activity
AMJAP_1110	COG0271	Belongs to the BolA IbaG family
AMJAP_1112	COG1132	(ABC) transporter
AMJAP_1113	COG3133	Outer membrane lipoprotein
AMJAP_1115	COG0514	ATP-dependent DNA helicase (RecQ)
AMJAP_1116	COG1238	metal cluster binding
AMJAP_1122	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJAP_1124	COG0037	tRNA processing
AMJAP_1126	COG1024	Enoyl-CoA hydratase
AMJAP_1128	COG3258	Cytochrome c
AMJAP_1132	COG3258	Cytochrome c
AMJAP_1134	COG0737	Belongs to the 5'-nucleotidase family
AMJAP_1136	COG3101	peptidyl-lysine hydroxylation
AMJAP_1141	COG0023	Translation Initiation Factor
AMJAP_1145	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AMJAP_1146	COG2954	triphosphatase activity
AMJAP_1147	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMJAP_1147	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AMJAP_1149	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AMJAP_1151	COG2326	polyphosphate kinase activity
AMJAP_1157	COG0489	protein tyrosine kinase activity
AMJAP_1158	COG0717	Belongs to the dCTP deaminase family
AMJAP_1161	COG3300	MHYT domain
AMJAP_1161	COG5001	Diguanylate cyclase
AMJAP_1163	COG1538	Outer membrane efflux protein
AMJAP_1164	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AMJAP_1165	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJAP_1166	COG1309	transcriptional regulator
AMJAP_1167	COG0436	Aminotransferase
AMJAP_1168	COG0556	nucleotide-excision repair
AMJAP_1169	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJAP_1169	COG4191	Histidine kinase
AMJAP_1172	COG2204	response regulator
AMJAP_1178	COG0686	Belongs to the AlaDH PNT family
AMJAP_1179	COG2207	Transcriptional regulator
AMJAP_1187	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMJAP_1188	COG2159	amidohydrolase
AMJAP_1189	COG0583	DNA-binding transcription factor activity
AMJAP_1191	COG0667	Aldo Keto reductase
AMJAP_1198	COG0583	DNA-binding transcription factor activity
AMJAP_1203	COG0625	glutathione transferase activity
AMJAP_1204	COG0583	DNA-binding transcription factor activity
AMJAP_1208	COG2212	antiporter activity
AMJAP_1209	COG1863	multisubunit Na H antiporter MnhE subunit
AMJAP_1210	COG0651	ATP synthesis coupled electron transport
AMJAP_1211	COG1006	Multisubunit Na H antiporter MnhC subunit
AMJAP_1212	COG2111	Na H antiporter
AMJAP_1212	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMJAP_1219	COG0784	Response regulator, receiver
AMJAP_1219	COG2205	protein histidine kinase activity
AMJAP_1223	COG1234	tRNA 3'-trailer cleavage
AMJAP_1225	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
AMJAP_1239	COG0697	spore germination
AMJAP_1240	COG1522	sequence-specific DNA binding
AMJAP_1243	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AMJAP_1243	COG0506	proline dehydrogenase activity
AMJAP_1243	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AMJAP_1246	COG0640	Transcriptional regulator
AMJAP_1249	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AMJAP_1252	COG2261	transglycosylase associated protein
AMJAP_1254	COG4807	Protein conserved in bacteria
AMJAP_1258	COG2207	Transcriptional regulator
AMJAP_1261	COG3706	GGDEF domain
AMJAP_1264	COG1802	Transcriptional regulator
AMJAP_1266	COG0579	oxidoreductase
AMJAP_1271	COG0251	oxidation-reduction process
AMJAP_1272	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJAP_1274	COG2962	Rard protein
AMJAP_1279	COG0791	NLP P60 protein
AMJAP_1282	COG0784	Response regulator, receiver
AMJAP_1282	COG3437	response regulator, receiver
AMJAP_1284	COG1132	(ABC) transporter
AMJAP_1285	COG0390	transport system, permease component
AMJAP_1290	COG0714	Associated with various cellular activities
AMJAP_1297	COG0784	Response regulator, receiver
AMJAP_1297	COG2205	protein histidine kinase activity
AMJAP_1302	COG1131	(ABC) transporter
AMJAP_1307	COG0745	RESPONSE REGULATOR receiver
AMJAP_1308	COG2205	protein histidine kinase activity
AMJAP_1309	COG3713	MltA-interacting MipA family protein
AMJAP_1318	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
AMJAP_1320	COG3706	GGDEF domain
AMJAP_1322	COG1279	arginine transmembrane transporter activity
AMJAP_1323	COG0840	transmembrane signaling receptor activity
AMJAP_1325	COG5001	Diguanylate cyclase
AMJAP_1329	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
AMJAP_1332	COG0535	radical SAM domain protein
AMJAP_1334	COG2824	Alkylphosphonate utilization operon protein PhnA
AMJAP_1342	COG0429	hydrolase of the alpha beta-hydrolase fold
AMJAP_1344	COG2258	MOSC domain
AMJAP_1350	COG3154	lipid carrier protein
AMJAP_1351	COG0826	peptidase U32
AMJAP_1352	COG0826	peptidase U32
AMJAP_1354	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMJAP_1363	COG0714	Associated with various cellular activities
AMJAP_1366	COG0697	spore germination
AMJAP_1369	COG0307	riboflavin synthase, alpha
AMJAP_1370	COG1090	epimerase
AMJAP_1372	COG2902	Dehydrogenase
AMJAP_1374	COG0167	dihydroorotate dehydrogenase activity
AMJAP_1375	COG3130	regulation of translation
AMJAP_1376	COG0116	Belongs to the methyltransferase superfamily
AMJAP_1376	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMJAP_1377	COG0004	ammonium transporteR
AMJAP_1379	COG2009	succinate dehydrogenase
AMJAP_1380	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
AMJAP_1381	COG1053	succinate dehydrogenase
AMJAP_1382	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AMJAP_1385	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMJAP_1386	COG0045	succinate-CoA ligase (ADP-forming) activity
AMJAP_1393	COG1280	lysine exporter protein (LysE YggA)
AMJAP_1395	COG0513	Belongs to the DEAD box helicase family
AMJAP_1398	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMJAP_1402	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AMJAP_1403	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
AMJAP_1405	COG0628	permease
AMJAP_1408	COG0564	pseudouridine synthase activity
AMJAP_1410	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AMJAP_1412	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AMJAP_1415	COG1393	Belongs to the ArsC family
AMJAP_1416	COG1295	ribonuclease BN
AMJAP_1419	COG2329	Antibiotic biosynthesis monooxygenase
AMJAP_1421	COG0442	prolyl-tRNA aminoacylation
AMJAP_1425	COG0668	transmembrane transport
AMJAP_1427	COG1960	acyl-CoA dehydrogenase activity
AMJAP_1428	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AMJAP_1429	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AMJAP_1434	COG3474	cytochrome
AMJAP_1438	COG4566	intracellular signal transduction
AMJAP_1439	COG4191	Histidine kinase
AMJAP_1440	COG0318	PFAM AMP-dependent synthetase and ligase
AMJAP_1442	COG4783	chaperone-mediated protein folding
AMJAP_1445	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AMJAP_1446	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
AMJAP_1448	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AMJAP_1449	COG0564	pseudouridine synthase activity
AMJAP_1450	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AMJAP_1451	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
AMJAP_1453	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
AMJAP_1453	COG0316	Belongs to the HesB IscA family
AMJAP_1454	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AMJAP_1456	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMJAP_1462	COG4172	Belongs to the ABC transporter superfamily
AMJAP_1463	COG4239	(ABC) transporter, permease
AMJAP_1464	COG4174	ABC transporter (Permease)
AMJAP_1465	COG4166	transmembrane transport
AMJAP_1467	COG0741	lytic transglycosylase activity
AMJAP_1467	COG1388	LysM domain
AMJAP_1468	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AMJAP_1469	COG2226	methyltransferase
AMJAP_1470	COG0328	RNA-DNA hybrid ribonuclease activity
AMJAP_1471	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMJAP_1472	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
AMJAP_1473	COG2816	NAD+ diphosphatase activity
AMJAP_1475	COG0616	signal peptide processing
AMJAP_1477	COG1376	ErfK ybiS ycfS ynhG family protein
AMJAP_1478	COG1472	Belongs to the glycosyl hydrolase 3 family
AMJAP_1479	COG0668	transmembrane transport
AMJAP_1482	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AMJAP_1484	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AMJAP_1485	COG1805	sodium ion transport
AMJAP_1488	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
AMJAP_1489	COG2871	sodium ion transport
AMJAP_1490	COG1477	protein flavinylation
AMJAP_1492	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMJAP_1496	COG4591	ABC-type transport system involved in lipoprotein release permease component
AMJAP_1497	COG1136	(ABC) transporter
AMJAP_1500	COG0811	peptide transport
AMJAP_1501	COG0848	biopolymer transport protein
AMJAP_1503	COG2835	tetraacyldisaccharide 4'-kinase activity
AMJAP_1504	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
AMJAP_1508	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AMJAP_1509	COG0812	UDP-N-acetylmuramate dehydrogenase activity
AMJAP_1510	COG1530	ribonuclease E activity
AMJAP_1517	COG0589	response to stress
AMJAP_1518	COG0583	DNA-binding transcription factor activity
AMJAP_1519	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AMJAP_1523	COG2081	HI0933 family
AMJAP_1525	COG3005	denitrification pathway
AMJAP_1526	COG0443	Heat shock 70 kDa protein
AMJAP_1527	COG0583	DNA-binding transcription factor activity
AMJAP_1532	COG1006	Multisubunit Na H antiporter MnhC subunit
AMJAP_1533	COG0651	ATP synthesis coupled electron transport
AMJAP_1534	COG0651	ATP synthesis coupled electron transport
AMJAP_1536	COG2111	Na H antiporter
AMJAP_1536	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AMJAP_1538	COG1944	ATP diphosphatase activity
AMJAP_1542	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AMJAP_1545	COG0513	Belongs to the DEAD box helicase family
AMJAP_1548	COG2066	Belongs to the glutaminase family
AMJAP_1552	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
AMJAP_1554	COG1289	transmembrane transporter activity
AMJAP_1556	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AMJAP_1557	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AMJAP_1558	COG0544	peptidyl-prolyl cis-trans isomerase activity
AMJAP_1559	COG0740	serine-type endopeptidase activity
AMJAP_1560	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
AMJAP_1561	COG0217	transcriptional regulatory protein
AMJAP_1563	COG3706	GGDEF domain
AMJAP_1565	COG3791	Glutathione-dependent formaldehyde-activating
AMJAP_1574	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AMJAP_1575	COG2814	Major facilitator Superfamily
AMJAP_1576	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
AMJAP_1579	COG0463	Glycosyl transferase, family 2
AMJAP_1587	COG1451	nucleotide metabolic process
AMJAP_1589	COG2050	protein possibly involved in aromatic compounds catabolism
AMJAP_1591	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMJAP_1592	COG2207	Transcriptional regulator
AMJAP_1595	COG0490	domain, Protein
AMJAP_1595	COG0471	metal ion transport
AMJAP_1596	COG1607	acyl-coa hydrolase
AMJAP_1597	COG0583	DNA-binding transcription factor activity
AMJAP_1598	COG0247	lactate metabolic process
AMJAP_1598	COG0277	FAD linked oxidase domain protein
AMJAP_1600	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
AMJAP_1601	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJAP_1603	COG0546	phosphoglycolate phosphatase activity
AMJAP_1604	COG0616	signal peptide processing
AMJAP_1607	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
AMJAP_1608	COG0424	maF-like protein
AMJAP_1609	COG1399	metal-binding, possibly nucleic acid-binding protein
AMJAP_1610	COG0333	Belongs to the bacterial ribosomal protein bL32 family
AMJAP_1611	COG0416	fatty acid biosynthetic process
AMJAP_1612	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AMJAP_1614	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AMJAP_1615	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AMJAP_1617	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AMJAP_1618	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AMJAP_1621	COG0084	hydrolase, TatD family'
AMJAP_1623	COG0039	L-malate dehydrogenase activity
AMJAP_1624	COG0432	Pfam Uncharacterised protein family UPF0047
AMJAP_1626	COG3622	Belongs to the hyi family
AMJAP_1627	COG2084	Dehydrogenase
AMJAP_1630	COG2923	Belongs to the DsrF TusC family
AMJAP_1631	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
AMJAP_1632	COG0670	Belongs to the BI1 family
AMJAP_1633	COG0564	pseudouridine synthase activity
AMJAP_1635	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
AMJAP_1636	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AMJAP_1638	COG2084	Dehydrogenase
AMJAP_1641	COG0322	excinuclease ABC activity
AMJAP_1642	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AMJAP_1643	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AMJAP_1646	COG2197	response regulator
AMJAP_1658	COG0318	PFAM AMP-dependent synthetase and ligase
AMJAP_1659	COG1278	Cold shock
AMJAP_1660	COG4191	Histidine kinase
AMJAP_1663	COG3360	Dodecin
AMJAP_1664	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AMJAP_1665	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMJAP_1667	COG0750	zinc metalloprotease
AMJAP_1669	COG0300	oxidoreductase activity
AMJAP_1672	COG0753	catalase activity
AMJAP_1675	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
AMJAP_1676	COG0646	methionine synthase
AMJAP_1676	COG1410	methionine synthase
AMJAP_1679	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMJAP_1684	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMJAP_1685	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AMJAP_1686	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
AMJAP_1687	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AMJAP_1688	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AMJAP_1689	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AMJAP_1690	COG1674	ftsk spoiiie
AMJAP_1691	COG0492	ferredoxin-NADP+ reductase activity
AMJAP_1692	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
AMJAP_1693	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
AMJAP_1694	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AMJAP_1695	COG0542	response to heat
AMJAP_1696	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
AMJAP_1697	COG1278	Cold shock
AMJAP_1698	COG1187	pseudouridine synthase activity
AMJAP_1699	COG0314	molybdopterin synthase activity
AMJAP_1701	COG0482	sulfurtransferase activity
AMJAP_1702	COG2915	High frequency lysogenization protein hflD homolog
AMJAP_1704	COG2267	carboxylic ester hydrolase activity
AMJAP_1705	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
AMJAP_1706	COG2850	peptidyl-arginine hydroxylation
AMJAP_1711	COG0477	Major facilitator Superfamily
AMJAP_1712	COG3047	cAMP biosynthetic process
AMJAP_1714	COG1024	Enoyl-CoA hydratase
AMJAP_1715	COG1132	(ABC) transporter
AMJAP_1719	COG0215	cysteine-tRNA ligase activity
AMJAP_1720	COG0674	pyruvate-flavodoxin oxidoreductase activity
AMJAP_1720	COG1013	pyruvate-flavodoxin oxidoreductase activity
AMJAP_1720	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
AMJAP_1720	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
AMJAP_1722	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMJAP_1723	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMJAP_1724	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
AMJAP_1725	COG1942	4-Oxalocrotonate Tautomerase
AMJAP_1729	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AMJAP_1729	COG4651	solute:proton antiporter activity
AMJAP_1731	COG0583	DNA-binding transcription factor activity
AMJAP_1732	COG0604	alcohol dehydrogenase
AMJAP_1735	COG2828	Protein conserved in bacteria
AMJAP_1736	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AMJAP_1737	COG0372	Belongs to the citrate synthase family
AMJAP_1738	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
AMJAP_1739	COG1802	Transcriptional regulator
AMJAP_1741	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AMJAP_1745	COG3148	PFAM DTW domain containing protein
AMJAP_1746	COG5001	Diguanylate cyclase
AMJAP_1746	COG1716	ATPase activity
AMJAP_1748	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AMJAP_1752	COG2814	Major facilitator Superfamily
AMJAP_1754	COG0583	DNA-binding transcription factor activity
AMJAP_1755	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AMJAP_1756	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AMJAP_1760	COG4232	protein-disulfide reductase activity
AMJAP_1763	COG1252	NADH dehydrogenase
AMJAP_1765	COG0840	transmembrane signaling receptor activity
AMJAP_1772	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AMJAP_1774	COG5002	protein histidine kinase activity
AMJAP_1774	COG5001	Diguanylate cyclase
AMJAP_1774	COG3447	MASE1 domain protein
AMJAP_1775	COG1960	acyl-CoA dehydrogenase activity
AMJAP_1776	COG2207	Transcriptional regulator
AMJAP_1777	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMJAP_1779	COG0071	Belongs to the small heat shock protein (HSP20) family
AMJAP_1780	COG2110	phosphatase homologous to the C-terminal domain of histone macroH2A1
AMJAP_1782	COG1355	regulation of microtubule-based process
AMJAP_1787	COG1286	toxin biosynthetic process
AMJAP_1789	COG0285	dihydrofolate synthase activity
AMJAP_1791	COG0159	tryptophan synthase activity
AMJAP_1793	COG0135	phosphoribosylanthranilate isomerase activity
AMJAP_1796	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AMJAP_1797	COG0473	3-isopropylmalate dehydrogenase activity
AMJAP_1798	COG0066	3-isopropylmalate dehydratase activity
AMJAP_1799	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
AMJAP_1802	COG3243	poly(R)-hydroxyalkanoic acid synthase
AMJAP_1803	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
AMJAP_1809	COG5394	Polyhydroxyalkanoate synthesis repressor PhaR
AMJAP_1811	COG2814	Major facilitator Superfamily
AMJAP_1812	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
AMJAP_1813	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
AMJAP_1816	COG0302	gtp cyclohydrolase
AMJAP_1822	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
AMJAP_1823	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
AMJAP_1824	COG0513	Belongs to the DEAD box helicase family
AMJAP_1825	COG1199	ATP-dependent helicase activity
AMJAP_1826	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
AMJAP_1834	COG0589	response to stress
AMJAP_1835	COG0488	(ABC) transporter
AMJAP_1836	COG0741	lytic transglycosylase activity
AMJAP_1839	COG3243	poly(R)-hydroxyalkanoic acid synthase
AMJAP_1843	COG3287	FIST C domain
AMJAP_1843	COG2199	diguanylate cyclase activity
AMJAP_1843	COG2200	EAL domain
AMJAP_1845	COG0425	Belongs to the sulfur carrier protein TusA family
AMJAP_1847	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
AMJAP_1849	COG3278	Belongs to the heme-copper respiratory oxidase family
AMJAP_1852	COG2010	Cytochrome c
AMJAP_1855	COG2217	Heavy metal translocating P-type atpase
AMJAP_1859	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJAP_1860	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AMJAP_1863	COG2974	May be involved in recombination
AMJAP_1865	COG0602	queuosine metabolic process
AMJAP_1866	COG0385	Bile acid
AMJAP_1867	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AMJAP_1868	COG1739	Uncharacterized protein family UPF0029
AMJAP_1869	COG0659	secondary active sulfate transmembrane transporter activity
AMJAP_1870	COG3706	GGDEF domain
AMJAP_1872	COG0708	Exodeoxyribonuclease III
AMJAP_1874	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AMJAP_1880	COG0640	Transcriptional regulator
AMJAP_1886	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AMJAP_1888	COG0133	tryptophan synthase activity
AMJAP_1894	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AMJAP_1899	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AMJAP_1900	COG1074	ATP-dependent DNA helicase activity
AMJAP_1901	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
AMJAP_1903	COG2814	Major facilitator Superfamily
AMJAP_1906	COG2030	dehydratase
AMJAP_1907	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
AMJAP_1908	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
AMJAP_1910	COG2885	chlorophyll binding
AMJAP_1911	COG0823	Involved in the tonB-independent uptake of proteins
AMJAP_1916	COG2255	four-way junction helicase activity
AMJAP_1917	COG0632	four-way junction helicase activity
AMJAP_1919	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
AMJAP_1920	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
AMJAP_1931	COG0308	aminopeptidase N
AMJAP_1933	COG3139	Protein of unknown function (DUF1315)
AMJAP_1935	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
AMJAP_1936	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AMJAP_1942	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMJAP_1943	COG0436	Aminotransferase
AMJAP_1945	COG1639	'signal transduction protein
AMJAP_1947	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMJAP_1948	COG0501	Belongs to the peptidase M48B family
AMJAP_1959	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AMJAP_1966	COG0019	diaminopimelate decarboxylase activity
AMJAP_1968	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMJAP_1969	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
AMJAP_1972	COG1846	Transcriptional regulator
AMJAP_1973	COG3384	dioxygenase
AMJAP_1975	COG2814	Major facilitator Superfamily
AMJAP_1978	COG3813	Protein conserved in bacteria
AMJAP_1980	COG0668	transmembrane transport
AMJAP_1987	COG3971	2-oxopent-4-enoate hydratase activity
AMJAP_1989	COG0456	acetyltransferase
AMJAP_1992	COG0326	Molecular chaperone. Has ATPase activity
AMJAP_1996	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMJAP_2000	COG0579	oxidoreductase
AMJAP_2002	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AMJAP_2003	COG1242	4 iron, 4 sulfur cluster binding
AMJAP_2004	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMJAP_2007	COG1024	Enoyl-CoA hydratase
AMJAP_2008	COG1024	Enoyl-CoA hydratase
AMJAP_2009	COG1960	acyl-CoA dehydrogenase activity
AMJAP_2012	COG3243	poly(R)-hydroxyalkanoic acid synthase
AMJAP_2015	COG1522	sequence-specific DNA binding
AMJAP_2016	COG0531	amino acid
AMJAP_2019	COG1902	pentaerythritol trinitrate reductase activity
AMJAP_2019	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJAP_2020	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AMJAP_2022	COG3053	Acetylation of prosthetic group (2-(5''-phosphoribosyl)- 3'-dephosphocoenzyme-A) of the gamma subunit of citrate lyase
AMJAP_2023	COG0183	Belongs to the thiolase family
AMJAP_2030	COG1960	acyl-CoA dehydrogenase activity
AMJAP_2031	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AMJAP_2032	COG1024	Enoyl-CoA hydratase
AMJAP_2033	COG4770	biotin carboxylase activity
AMJAP_2036	COG0318	PFAM AMP-dependent synthetase and ligase
AMJAP_2037	COG2226	methyltransferase
AMJAP_2038	COG0513	Belongs to the DEAD box helicase family
AMJAP_2039	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AMJAP_2041	COG0730	response to heat
AMJAP_2042	COG0659	secondary active sulfate transmembrane transporter activity
AMJAP_2043	COG0037	tRNA processing
AMJAP_2043	COG0590	tRNA wobble adenosine to inosine editing
AMJAP_2044	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AMJAP_2048	COG0484	heat shock protein binding
AMJAP_2050	COG0179	Fumarylacetoacetate (FAA) hydrolase
AMJAP_2052	COG2205	protein histidine kinase activity
AMJAP_2054	COG2204	response regulator
AMJAP_2059	COG0625	glutathione transferase activity
AMJAP_2060	COG3530	Putative quorum-sensing-regulated virulence factor
AMJAP_2062	COG1444	tRNA N-acetyltransferase activity
AMJAP_2067	COG0625	glutathione transferase activity
AMJAP_2071	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AMJAP_2073	COG4336	lyase activity
AMJAP_2075	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
AMJAP_2076	COG1984	allophanate hydrolase subunit 2
AMJAP_2078	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AMJAP_2079	COG1522	sequence-specific DNA binding
AMJAP_2080	COG0583	DNA-binding transcription factor activity
AMJAP_2084	COG1902	pentaerythritol trinitrate reductase activity
AMJAP_2087	COG2226	methyltransferase
AMJAP_2089	COG0514	ATP-dependent DNA helicase (RecQ)
AMJAP_2090	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMJAP_2094	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_2096	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJAP_2098	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJAP_2099	COG1757	Na H antiporter
AMJAP_2100	COG0697	spore germination
AMJAP_2102	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJAP_2104	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AMJAP_2104	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_2106	COG1793	dna ligase
AMJAP_2112	COG0435	Glutathione S-transferase
AMJAP_2119	COG0583	DNA-binding transcription factor activity
AMJAP_2120	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMJAP_2120	COG0519	Catalyzes the synthesis of GMP from XMP
AMJAP_2121	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMJAP_2121	COG0519	Catalyzes the synthesis of GMP from XMP
AMJAP_2122	COG1177	transmembrane transport
AMJAP_2123	COG1176	ABC-type spermidine putrescine transport system, permease component I
AMJAP_2124	COG3842	ATPase activity
AMJAP_2125	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
AMJAP_2126	COG0174	glutamine synthetase
AMJAP_2131	COG1012	belongs to the aldehyde dehydrogenase family
AMJAP_2133	COG1280	lysine exporter protein (LysE YggA)
AMJAP_2137	COG0010	Belongs to the arginase family
AMJAP_2144	COG2197	response regulator
AMJAP_2148	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AMJAP_2150	COG3272	Protein of unknown function (DUF1722)
AMJAP_2151	COG0415	Belongs to the DNA photolyase family
AMJAP_2152	COG3267	Type II secretory pathway component ExeA
AMJAP_2152	COG3409	Peptidoglycan-binding domain 1 protein
AMJAP_2155	COG0492	ferredoxin-NADP+ reductase activity
AMJAP_2162	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AMJAP_2163	COG1459	type II secretion system
AMJAP_2169	COG4191	Histidine kinase
AMJAP_2173	COG1999	signal sequence binding
AMJAP_2180	COG1404	Belongs to the peptidase S8 family
AMJAP_2184	COG1450	Type ii and iii secretion system protein
AMJAP_2186	COG3806	Anti-sigma factor
AMJAP_2187	COG1595	DNA-templated transcription, initiation
AMJAP_2188	COG0493	'glutamate synthase
AMJAP_2190	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
AMJAP_2197	COG3300	MHYT domain
AMJAP_2197	COG5001	Diguanylate cyclase
AMJAP_2198	COG0625	glutathione transferase activity
AMJAP_2201	COG0583	DNA-binding transcription factor activity
AMJAP_2203	COG3327	negative regulation of DNA-templated transcription, initiation
AMJAP_2205	COG1012	belongs to the aldehyde dehydrogenase family
AMJAP_2206	COG1024	Enoyl-CoA hydratase
AMJAP_2207	COG1024	Enoyl-CoA hydratase
AMJAP_2208	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMJAP_2209	COG2050	protein possibly involved in aromatic compounds catabolism
AMJAP_2210	COG0183	Belongs to the thiolase family
AMJAP_2212	COG3396	Phenylacetate-CoA oxygenase
AMJAP_2213	COG3460	Phenylacetate-CoA oxygenase
AMJAP_2214	COG3396	Phenylacetate-CoA oxygenase
AMJAP_2215	COG2151	metal-sulfur cluster biosynthetic enzyme
AMJAP_2216	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AMJAP_2217	COG1012	belongs to the aldehyde dehydrogenase family
AMJAP_2217	COG2030	dehydratase
AMJAP_2218	COG3106	COG3106 Predicted ATPase
AMJAP_2225	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
AMJAP_2229	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMJAP_2229	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
AMJAP_2230	COG2201	protein-glutamate methylesterase activity
AMJAP_2231	COG1116	anion transmembrane transporter activity
AMJAP_2231	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMJAP_2232	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AMJAP_2233	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AMJAP_2234	COG1116	anion transmembrane transporter activity
AMJAP_2235	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMJAP_2236	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AMJAP_2237	COG2146	nitrite reductase [NAD(P)H] activity
AMJAP_2238	COG0243	molybdopterin cofactor binding
AMJAP_2239	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AMJAP_2242	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
AMJAP_2243	COG2853	Lipoprotein
AMJAP_2245	COG1643	Atp-dependent helicase
AMJAP_2246	COG0121	glutamine amidotransferase
AMJAP_2248	COG0739	heme binding
AMJAP_2251	COG0183	Belongs to the thiolase family
AMJAP_2252	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AMJAP_2252	COG0506	proline dehydrogenase activity
AMJAP_2252	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
AMJAP_2253	COG1611	Belongs to the LOG family
AMJAP_2255	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AMJAP_2256	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
AMJAP_2258	COG0668	transmembrane transport
AMJAP_2259	COG1061	Type III restriction enzyme res subunit
AMJAP_2265	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
AMJAP_2271	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AMJAP_2273	COG1280	lysine exporter protein (LysE YggA)
AMJAP_2274	COG3901	Regulator of nitric oxide reductase transcription
AMJAP_2274	COG0348	domain, Protein
AMJAP_2277	COG3038	cytochrome b561
AMJAP_2278	COG2353	YceI-like domain
AMJAP_2282	COG3122	Protein conserved in bacteria
AMJAP_2283	COG1278	Cold shock
AMJAP_2286	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMJAP_2286	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMJAP_2287	COG0509	glycine decarboxylation via glycine cleavage system
AMJAP_2288	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AMJAP_2289	COG1760	l-serine dehydratase
AMJAP_2291	COG1115	amino acid carrier protein
AMJAP_2292	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AMJAP_2293	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
AMJAP_2294	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AMJAP_2297	COG1917	Cupin 2, conserved barrel domain protein
AMJAP_2300	COG1846	Transcriptional regulator
AMJAP_2303	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AMJAP_2305	COG0583	DNA-binding transcription factor activity
AMJAP_2306	COG3048	D-serine ammonia-lyase activity
AMJAP_2307	COG1115	amino acid carrier protein
AMJAP_2308	COG2267	carboxylic ester hydrolase activity
AMJAP_2310	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AMJAP_2311	COG1396	sequence-specific DNA binding
AMJAP_2311	COG1917	Cupin 2, conserved barrel domain protein
AMJAP_2313	COG1804	L-carnitine dehydratase bile acid-inducible protein F
AMJAP_2314	COG1960	acyl-CoA dehydrogenase activity
AMJAP_2315	COG2832	Protein of unknown function (DUF454)
AMJAP_2318	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
AMJAP_2325	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJAP_2326	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_2326	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AMJAP_2328	COG0583	DNA-binding transcription factor activity
AMJAP_2330	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
AMJAP_2331	COG0830	nickel cation binding
AMJAP_2332	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
AMJAP_2333	COG0804	urea catabolic process
AMJAP_2334	COG0832	Belongs to the urease beta subunit family
AMJAP_2335	COG0831	urea catabolic process
AMJAP_2336	COG0829	nickel cation binding
AMJAP_2347	COG0745	RESPONSE REGULATOR receiver
AMJAP_2348	COG0784	Response regulator, receiver
AMJAP_2348	COG2205	protein histidine kinase activity
AMJAP_2350	COG0583	DNA-binding transcription factor activity
AMJAP_2351	COG0154	amidase activity
AMJAP_2359	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_2362	COG0583	DNA-binding transcription factor activity
AMJAP_2366	COG3383	formate dehydrogenase (NAD+) activity
AMJAP_2367	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AMJAP_2374	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AMJAP_2374	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_2376	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJAP_2381	COG1063	alcohol dehydrogenase
AMJAP_2383	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
AMJAP_2384	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AMJAP_2384	COG1017	nitric oxide dioxygenase activity
AMJAP_2386	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AMJAP_2388	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AMJAP_2390	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
AMJAP_2391	COG0247	lactate metabolic process
AMJAP_2391	COG2181	nitrate reductase activity
AMJAP_2392	COG1902	pentaerythritol trinitrate reductase activity
AMJAP_2392	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJAP_2405	COG1760	l-serine dehydratase
AMJAP_2408	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJAP_2408	COG0404	The glycine cleavage system catalyzes the degradation of glycine
AMJAP_2411	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
AMJAP_2417	COG1469	GTP cyclohydrolase I activity
AMJAP_2418	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AMJAP_2419	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AMJAP_2422	COG0583	DNA-binding transcription factor activity
AMJAP_2424	COG3132	Protein of unknown function, DUF480
AMJAP_2425	COG2258	MOSC domain
AMJAP_2426	COG3284	Transcriptional regulator
AMJAP_2433	COG0644	oxidoreductase
AMJAP_2434	COG1404	Belongs to the peptidase S8 family
AMJAP_2435	COG1132	(ABC) transporter
AMJAP_2444	COG2173	Catalyzes hydrolysis of the D-alanyl-D-alanine dipeptide
AMJAP_2445	COG1278	Cold shock
AMJAP_2447	COG0513	Belongs to the DEAD box helicase family
AMJAP_2448	COG2223	nitrite transmembrane transporter activity
AMJAP_2450	COG3850	Histidine kinase
AMJAP_2451	COG2197	response regulator
AMJAP_2452	COG2223	nitrite transmembrane transporter activity
AMJAP_2453	COG0515	serine threonine protein kinase
AMJAP_2453	COG2815	serine threonine protein kinase
AMJAP_2458	COG0746	molybdenum cofactor guanylyltransferase activity
AMJAP_2459	COG0303	'Molybdopterin
AMJAP_2460	COG0521	Mo-molybdopterin cofactor biosynthetic process
AMJAP_2461	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJAP_2462	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMJAP_2463	COG0288	reversible hydration of carbon dioxide
AMJAP_2465	COG2181	nitrate reductase activity
AMJAP_2466	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
AMJAP_2467	COG1140	nitrate reductase beta subunit
AMJAP_2468	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
AMJAP_2474	COG0583	DNA-binding transcription factor activity
AMJAP_2477	COG0154	amidase activity
AMJAP_2480	COG0488	(ABC) transporter
AMJAP_2491	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
AMJAP_2492	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
AMJAP_2493	COG1119	ATPase activity
AMJAP_2494	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJAP_2498	COG1192	Involved in chromosome partitioning
AMJAP_2501	COG1960	acyl-CoA dehydrogenase activity
AMJAP_2506	COG0318	PFAM AMP-dependent synthetase and ligase
AMJAP_2508	COG0745	RESPONSE REGULATOR receiver
AMJAP_2510	COG0842	Transport permease protein
AMJAP_2511	COG1131	(ABC) transporter
AMJAP_2514	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AMJAP_2515	COG3039	Transposase
AMJAP_2516	COG0589	response to stress
AMJAP_2518	COG4447	cellulose binding
AMJAP_2523	COG0277	FAD linked oxidase domain protein
AMJAP_2524	COG4221	oxidoreductase activity
AMJAP_2528	COG0318	PFAM AMP-dependent synthetase and ligase
AMJAP_2531	COG0778	Nitroreductase
AMJAP_2532	COG1024	Enoyl-CoA hydratase
AMJAP_2532	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMJAP_2533	COG1024	Enoyl-CoA hydratase
AMJAP_2534	COG0183	Belongs to the thiolase family
AMJAP_2539	COG1322	Protein conserved in bacteria
AMJAP_2550	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMJAP_2550	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
AMJAP_2552	COG0625	glutathione transferase activity
AMJAP_2554	COG0583	DNA-binding transcription factor activity
AMJAP_2557	COG1741	Belongs to the pirin family
AMJAP_2558	COG1335	isochorismatase
AMJAP_2559	COG1162	GTPase activity
AMJAP_2562	COG0513	Belongs to the DEAD box helicase family
AMJAP_2565	COG0583	DNA-binding transcription factor activity
AMJAP_2566	COG0625	glutathione transferase activity
AMJAP_2568	COG0419	ATPase involved in DNA repair
AMJAP_2569	COG0420	3'-5' exonuclease activity
AMJAP_2570	COG2860	membrane
AMJAP_2574	COG3384	dioxygenase
AMJAP_2578	COG0739	heme binding
AMJAP_2582	COG3038	cytochrome b561
AMJAP_2584	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AMJAP_2585	COG0456	acetyltransferase
AMJAP_2586	COG0778	Nitroreductase
AMJAP_2588	COG0842	Transport permease protein
AMJAP_2589	COG1131	(ABC) transporter
AMJAP_2594	COG2391	methyltransferase activity
AMJAP_2595	COG1522	sequence-specific DNA binding
AMJAP_2596	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
AMJAP_2597	COG2962	Rard protein
AMJAP_2599	COG0776	regulation of translation
AMJAP_2600	COG0072	phenylalanine-tRNA ligase activity
AMJAP_2601	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AMJAP_2602	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
AMJAP_2603	COG0291	Belongs to the bacterial ribosomal protein bL35 family
AMJAP_2604	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AMJAP_2605	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AMJAP_2607	COG0247	lactate metabolic process
AMJAP_2608	COG1139	Iron-sulfur cluster binding protein
AMJAP_2610	COG1858	cytochrome C peroxidase
AMJAP_2613	COG0417	DNA replication proofreading
AMJAP_2616	COG0083	homoserine kinase activity
AMJAP_2617	COG3425	synthase
AMJAP_2618	COG1304	FMN binding
AMJAP_2622	COG0137	argininosuccinate synthase activity
AMJAP_2624	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AMJAP_2625	COG0450	alkyl hydroperoxide reductase
AMJAP_2626	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
AMJAP_2627	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AMJAP_2628	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AMJAP_2629	COG0583	DNA-binding transcription factor activity
AMJAP_2631	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AMJAP_2632	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
AMJAP_2641	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
AMJAP_2641	COG0617	tRNA 3'-terminal CCA addition
AMJAP_2641	COG0517	IMP dehydrogenase activity
AMJAP_2642	COG0788	formyltetrahydrofolate deformylase activity
AMJAP_2643	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
AMJAP_2650	COG0716	FMN binding
AMJAP_2653	COG1951	Catalyzes the reversible hydration of fumarate to (S)- malate
AMJAP_2653	COG1838	Catalyzes the reversible hydration of fumarate to (S)- malate
AMJAP_2654	COG1575	Belongs to the MenA family. Type 1 subfamily
AMJAP_2655	COG0826	peptidase U32
AMJAP_2657	COG0625	glutathione transferase activity
AMJAP_2659	COG0459	protein refolding
AMJAP_2661	COG3030	protein affecting phage T7 exclusion by the F plasmid
AMJAP_2662	COG1028	Short-chain dehydrogenase reductase Sdr
AMJAP_2663	COG2211	Major facilitator Superfamily
AMJAP_2664	COG1666	GTP binding
AMJAP_2667	COG4206	TonB-dependent receptor
AMJAP_2668	COG2096	Adenosyltransferase
AMJAP_2670	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AMJAP_2674	COG0604	alcohol dehydrogenase
AMJAP_2675	COG2186	Transcriptional regulator
AMJAP_2678	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMJAP_2679	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AMJAP_2680	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
AMJAP_2681	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AMJAP_2685	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
AMJAP_2686	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
AMJAP_2687	COG1127	ABC transporter
AMJAP_2692	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
AMJAP_2693	COG1137	ATPase activity
AMJAP_2694	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
AMJAP_2697	COG1660	Displays ATPase and GTPase activities
AMJAP_2698	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AMJAP_2699	COG2239	Acts as a magnesium transporter
AMJAP_2702	COG1530	ribonuclease E activity
AMJAP_2703	COG0424	maF-like protein
AMJAP_2704	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
AMJAP_2705	COG1792	Involved in formation and maintenance of cell shape
AMJAP_2706	COG1077	Cell shape determining protein MreB Mrl
AMJAP_2707	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AMJAP_2708	COG0154	amidase activity
AMJAP_2709	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
AMJAP_2710	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMJAP_2711	COG1902	pentaerythritol trinitrate reductase activity
AMJAP_2711	COG0446	pyridine nucleotide-disulphide oxidoreductase
AMJAP_2713	COG3384	dioxygenase
AMJAP_2719	COG2900	Belongs to the SlyX family
AMJAP_2720	COG0742	ribosomal rna small subunit methyltransferase
AMJAP_2721	COG1968	undecaprenyl-diphosphatase activity
AMJAP_2724	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
AMJAP_2725	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
AMJAP_2726	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
AMJAP_2727	COG2354	Protein conserved in bacteria
AMJAP_2729	COG0778	Nitroreductase
AMJAP_2735	COG1250	3-hydroxyacyl-CoA dehydrogenase
AMJAP_2736	COG2233	PERMEase
AMJAP_2737	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
AMJAP_2740	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
AMJAP_2741	COG0511	ligase activity, forming carbon-carbon bonds
AMJAP_2743	COG2264	protein methyltransferase activity
AMJAP_2747	COG0138	bifunctional purine biosynthesis protein purh
AMJAP_2748	COG0151	Belongs to the GarS family
AMJAP_2752	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AMJAP_2755	COG2766	serine protein kinase
AMJAP_2756	COG2718	Belongs to the UPF0229 family
AMJAP_2757	COG2719	SpoVR family
AMJAP_2758	COG0537	adenosine 5'-monophosphoramidase activity
AMJAP_2761	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
AMJAP_2766	COG2824	Alkylphosphonate utilization operon protein PhnA
AMJAP_2769	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
AMJAP_2770	COG0563	adenylate kinase activity
AMJAP_2771	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
AMJAP_2773	COG3956	TIGRFAM MazG family protein
AMJAP_2774	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMJAP_2777	COG0736	holo-[acyl-carrier-protein] synthase activity
AMJAP_2778	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
AMJAP_2779	COG1381	Involved in DNA repair and RecF pathway recombination
AMJAP_2780	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AMJAP_2781	COG0571	ribonuclease III activity
AMJAP_2784	COG0481	GTPase activity
AMJAP_2785	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AMJAP_2792	COG1160	GTP binding
AMJAP_2794	COG2976	Protein conserved in bacteria
AMJAP_2795	COG0124	histidyl-tRNA synthetase
AMJAP_2798	COG0820	rRNA (adenine-C2-)-methyltransferase activity
AMJAP_2799	COG0105	UTP biosynthetic process
AMJAP_2802	COG0443	Heat shock 70 kDa protein
AMJAP_2803	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
AMJAP_2804	COG0316	Belongs to the HesB IscA family
AMJAP_2805	COG0822	iron-sulfur transferase activity
AMJAP_2806	COG1104	cysteine desulfurase activity
AMJAP_2811	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
AMJAP_2813	COG0330	HflC and HflK could
AMJAP_2814	COG0330	HflC and HflK could
AMJAP_2815	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AMJAP_2816	COG1923	regulation of RNA biosynthetic process
AMJAP_2817	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
AMJAP_2818	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
AMJAP_2819	COG0860	N-Acetylmuramoyl-L-alanine amidase
AMJAP_2820	COG0802	atpase or kinase
AMJAP_2821	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
AMJAP_2821	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AMJAP_2823	COG5002	protein histidine kinase activity
AMJAP_2823	COG5001	Diguanylate cyclase
AMJAP_2824	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
AMJAP_2825	COG1162	GTPase activity
AMJAP_2828	COG0688	phosphatidylethanolamine metabolic process
AMJAP_2829	COG0354	folic acid binding
AMJAP_2830	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
AMJAP_2832	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
AMJAP_2834	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AMJAP_2837	COG0716	FMN binding
AMJAP_2841	COG2391	methyltransferase activity
AMJAP_2843	COG0795	lipopolysaccharide-transporting ATPase activity
AMJAP_2844	COG0795	lipopolysaccharide-transporting ATPase activity
AMJAP_2848	COG0525	valine-tRNA ligase activity
AMJAP_2856	COG5001	Diguanylate cyclase
AMJAP_2856	COG3300	MHYT domain
AMJAP_2857	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AMJAP_2858	COG0348	domain, Protein
AMJAP_2861	COG0330	HflC and HflK could
AMJAP_2863	COG1309	transcriptional regulator
AMJAP_2870	COG1047	Peptidyl-prolyl cis-trans
AMJAP_2871	COG0400	carboxylic ester hydrolase activity
AMJAP_2872	COG0259	pyridoxamine-phosphate oxidase activity
AMJAP_2873	COG3001	Fructosamine kinase
AMJAP_2874	COG2995	paraquat-inducible protein a
AMJAP_2875	COG2995	paraquat-inducible protein a
AMJAP_2876	COG3008	intermembrane lipid transfer
AMJAP_2879	COG0572	uridine kinase
AMJAP_2881	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJAP_2884	COG0436	Aminotransferase
AMJAP_2885	COG1393	Belongs to the ArsC family
AMJAP_2887	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AMJAP_2888	COG2226	methyltransferase
AMJAP_2892	COG0583	DNA-binding transcription factor activity
AMJAP_2893	COG2855	membrane
AMJAP_2900	COG1854	S-ribosylhomocysteine lyase activity
AMJAP_2902	COG3152	Membrane
AMJAP_2906	COG0709	Synthesizes selenophosphate from selenide and ATP
AMJAP_2908	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMJAP_2908	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
AMJAP_2911	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
AMJAP_2912	COG0183	Belongs to the thiolase family
AMJAP_2914	COG0204	Acyl-transferase
AMJAP_2915	COG1024	Enoyl-CoA hydratase
AMJAP_2917	COG0318	PFAM AMP-dependent synthetase and ligase
AMJAP_2919	COG1960	acyl-CoA dehydrogenase activity
AMJAP_2934	COG0251	oxidation-reduction process
AMJAP_2935	COG1832	CoA-binding protein
AMJAP_2936	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AMJAP_2937	COG2890	protein-(glutamine-N5) methyltransferase activity
AMJAP_2938	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AMJAP_2939	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
AMJAP_2942	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AMJAP_2943	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
AMJAP_2944	COG0193	aminoacyl-tRNA hydrolase activity
AMJAP_2945	COG0012	GTP binding
AMJAP_2949	COG3830	Belongs to the UPF0237 family
AMJAP_2949	COG0560	Phosphoserine phosphatase
AMJAP_2950	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AMJAP_2951	COG0653	protein targeting
AMJAP_2956	COG1538	Outer membrane efflux protein
AMJAP_2957	COG0557	exoribonuclease II activity
AMJAP_2960	COG1862	Preprotein translocase
AMJAP_2961	COG0343	queuine tRNA-ribosyltransferase activity
AMJAP_2962	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
AMJAP_2965	COG1054	Belongs to the UPF0176 family
AMJAP_2966	COG0745	RESPONSE REGULATOR receiver
AMJAP_2967	COG5002	protein histidine kinase activity
AMJAP_2968	COG2304	oxidoreductase activity
AMJAP_2969	COG0583	DNA-binding transcription factor activity
AMJAP_2977	COG3220	belongs to the UPF0276 family
AMJAP_2980	COG2358	TRAP transporter, solute receptor (TAXI family
AMJAP_2984	COG1024	Enoyl-CoA hydratase
AMJAP_2987	COG0583	DNA-binding transcription factor activity
AMJAP_2989	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AMJAP_3003	COG3384	dioxygenase
AMJAP_3004	COG0435	Glutathione S-transferase
AMJAP_3005	COG0583	DNA-binding transcription factor activity
AMJAP_3016	COG0583	DNA-binding transcription factor activity
AMJAP_3019	COG1132	(ABC) transporter
AMJAP_3031	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
AMJAP_3032	COG3639	organic phosphonate transmembrane transporter activity
AMJAP_3033	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AMJAP_3033	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
AMJAP_3034	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
AMJAP_3036	COG1280	lysine exporter protein (LysE YggA)
AMJAP_3037	COG2813	Specifically methylates the guanine in position
AMJAP_3038	COG4771	TonB-dependent receptor
AMJAP_3040	COG5002	protein histidine kinase activity
AMJAP_3040	COG0784	Response regulator, receiver
AMJAP_3040	COG2205	protein histidine kinase activity
AMJAP_3044	COG0109	protoheme IX farnesyltransferase activity
AMJAP_3045	COG1612	heme a metabolic process
AMJAP_3048	COG1845	cytochrome c oxidase, subunit III
AMJAP_3049	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
AMJAP_3050	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AMJAP_3051	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AMJAP_3052	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
AMJAP_3054	COG1183	phosphatidylcholine synthase activity
AMJAP_3055	COG0519	Catalyzes the synthesis of GMP from XMP
AMJAP_3055	COG0518	GMP synthase (glutamine-hydrolyzing) activity
AMJAP_3057	COG0583	DNA-binding transcription factor activity
AMJAP_3060	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
AMJAP_3062	COG0028	Belongs to the TPP enzyme family
AMJAP_3065	COG0739	heme binding
AMJAP_3066	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
AMJAP_3069	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
AMJAP_3071	COG0352	thiamine-phosphate diphosphorylase activity
AMJAP_3072	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
AMJAP_3076	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AMJAP_3078	COG0714	Associated with various cellular activities
AMJAP_3080	COG1845	cytochrome c oxidase, subunit III
AMJAP_3083	COG2010	Cytochrome c
AMJAP_3086	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AMJAP_3088	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
AMJAP_3089	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AMJAP_3090	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
AMJAP_3092	COG1489	DNA binding
AMJAP_3093	COG0436	Aminotransferase
AMJAP_3094	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AMJAP_3095	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
AMJAP_3097	COG4191	Histidine kinase
AMJAP_3098	COG2204	response regulator
AMJAP_3101	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
AMJAP_3102	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
AMJAP_3103	COG0183	Belongs to the thiolase family
AMJAP_3105	COG1187	pseudouridine synthase activity
AMJAP_3106	COG2813	Specifically methylates the guanine in position
AMJAP_3112	COG1185	polyribonucleotide nucleotidyltransferase activity
AMJAP_3113	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
AMJAP_3114	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
AMJAP_3115	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
AMJAP_3116	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
AMJAP_3117	COG0195	Participates in both transcription termination and antitermination
AMJAP_3118	COG0779	Required for maturation of 30S ribosomal subunits
AMJAP_3119	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AMJAP_3120	COG0149	triose-phosphate isomerase activity
AMJAP_3122	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AMJAP_3123	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AMJAP_3124	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
AMJAP_3131	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
AMJAP_3131	COG1918	ferrous iron import across plasma membrane
AMJAP_3134	COG0564	pseudouridine synthase activity
AMJAP_3136	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
AMJAP_3144	COG4969	Belongs to the N-Me-Phe pilin family
AMJAP_3150	COG1047	Peptidyl-prolyl cis-trans
AMJAP_3152	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AMJAP_3153	COG0196	riboflavin kinase activity
AMJAP_3154	COG0728	peptidoglycan biosynthetic process
AMJAP_3155	COG0268	Binds directly to 16S ribosomal RNA
AMJAP_3156	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AMJAP_3157	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
AMJAP_3158	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AMJAP_3159	COG0261	This protein binds to 23S rRNA in the presence of protein L20
AMJAP_3160	COG0142	geranyltranstransferase activity
AMJAP_3161	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AMJAP_3164	COG0315	cyclic pyranopterin monophosphate synthase activity
AMJAP_3166	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
AMJAP_3173	COG0203	ribosomal protein L17
AMJAP_3176	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
AMJAP_3177	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
AMJAP_3178	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AMJAP_3180	COG0200	Binds to the 23S rRNA
AMJAP_3181	COG1841	ribosomal large subunit assembly
AMJAP_3182	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AMJAP_3183	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
AMJAP_3184	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
AMJAP_3185	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
AMJAP_3186	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
AMJAP_3187	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
AMJAP_3188	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
AMJAP_3189	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
AMJAP_3190	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
AMJAP_3191	COG0255	Belongs to the universal ribosomal protein uL29 family
AMJAP_3192	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AMJAP_3193	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
AMJAP_3194	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AMJAP_3195	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AMJAP_3196	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
AMJAP_3197	COG0089	rRNA binding
AMJAP_3198	COG0088	Forms part of the polypeptide exit tunnel
AMJAP_3199	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
AMJAP_3200	COG0051	transcription antitermination factor activity, RNA binding
AMJAP_3201	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AMJAP_3202	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
AMJAP_3203	COG0049	tRNA binding
AMJAP_3204	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
AMJAP_3205	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
AMJAP_3206	COG0085	RNA polymerase activity
AMJAP_3207	COG0222	ribosome binding
AMJAP_3209	COG0081	regulation of translation
AMJAP_3210	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AMJAP_3213	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
AMJAP_3215	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
AMJAP_3218	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AMJAP_3219	COG0494	nUDIX hydrolase
AMJAP_3220	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
AMJAP_3223	COG0494	nUDIX hydrolase
AMJAP_3226	COG0667	Aldo Keto reductase
AMJAP_3227	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AMJAP_3228	COG0509	glycine decarboxylation via glycine cleavage system
AMJAP_3230	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMJAP_3231	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AMJAP_3232	COG0006	proline dipeptidase activity
AMJAP_3233	COG3079	Belongs to the UPF0149 family
AMJAP_3236	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AMJAP_3239	COG0165	Argininosuccinate lyase
AMJAP_3240	COG0181	hydroxymethylbilane synthase activity
AMJAP_3242	COG2959	enzyme of heme biosynthesis
AMJAP_3243	COG3071	HemY protein
AMJAP_3246	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
AMJAP_3249	COG0248	Ppx GppA phosphatase
AMJAP_3251	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
AMJAP_3252	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AMJAP_3253	COG1011	Hydrolase
AMJAP_3254	COG0494	nUDIX hydrolase
AMJAP_3255	COG1218	3'(2'),5'-bisphosphate nucleotidase
AMJAP_3257	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AMJAP_3260	COG4181	ATPase activity
AMJAP_3261	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
AMJAP_3263	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
AMJAP_3264	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AMJAP_3272	COG2204	response regulator
AMJAP_3273	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_3274	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
AMJAP_3275	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AMJAP_3278	COG4191	Histidine kinase
AMJAP_3279	COG0469	pyruvate kinase activity
AMJAP_3284	COG3706	GGDEF domain
AMJAP_3286	COG1126	abc transporter atp-binding protein
AMJAP_3287	COG0765	amino acid transport
AMJAP_3288	COG4597	amino acid ABC transporter
AMJAP_3289	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AMJAP_3290	COG0545	Peptidyl-prolyl cis-trans isomerase
AMJAP_3292	COG0488	(ABC) transporter
AMJAP_3294	COG0405	Gamma-glutamyltransferase
AMJAP_3295	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AMJAP_3297	COG1513	Catalyzes the reaction of cyanate with bicarbonate to produce ammonia and carbon dioxide
AMJAP_3301	COG0708	Exodeoxyribonuclease III
AMJAP_3302	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
AMJAP_3303	COG1561	YicC-like family, N-terminal region
AMJAP_3305	COG1758	RNA polymerase activity
AMJAP_3306	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AMJAP_3308	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMJAP_3309	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AMJAP_3310	COG0140	phosphoribosyl-ATP diphosphatase activity
AMJAP_3311	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AMJAP_3312	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
AMJAP_3316	COG0218	Necessary for normal cell division and for the maintenance of normal septation
AMJAP_3320	COG0210	DNA helicase
AMJAP_3321	COG0700	Nucleoside recognition
AMJAP_3324	COG0573	inorganic phosphate transmembrane transporter activity
AMJAP_3325	COG0573	inorganic phosphate transmembrane transporter activity
AMJAP_3326	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AMJAP_3328	COG5001	Diguanylate cyclase
AMJAP_3328	COG4251	negative regulation of phosphorylation
AMJAP_3328	COG2203	Gaf domain
AMJAP_3328	COG3706	GGDEF domain
AMJAP_3330	COG3161	chorismate lyase activity
AMJAP_3331	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
AMJAP_3334	COG2981	High affinity, high specificity proton-dependent sulfate transporter, which mediates sulfate uptake. Provides the sulfur source for the cysteine synthesis pathway
AMJAP_3339	COG0840	transmembrane signaling receptor activity
AMJAP_3347	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
AMJAP_3348	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
AMJAP_3351	COG0069	glutamate synthase activity
AMJAP_3354	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
AMJAP_3355	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
AMJAP_3358	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
AMJAP_3359	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
AMJAP_3360	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
AMJAP_3361	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AMJAP_3362	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
AMJAP_3364	COG0356	it plays a direct role in the translocation of protons across the membrane
AMJAP_3366	COG1475	DNA binding
AMJAP_3367	COG1192	Involved in chromosome partitioning
AMJAP_3368	COG0357	Ribosomal RNA small subunit methyltransferase G
AMJAP_3369	COG0445	tRNA wobble uridine modification
AMJAP_3371	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
AMJAP_3372	COG0706	membrane insertase activity
AMJAP_3373	COG0594	ribonuclease P activity
AMJAP_3374	COG0230	Belongs to the bacterial ribosomal protein bL34 family