AJAP_00110	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_00110	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_00215	PWY-5958	acridone alkaloid biosynthesis
AJAP_00215	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AJAP_00215	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AJAP_00250	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_00250	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_00250	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_00250	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_00350	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_00405	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AJAP_00415	PWY-3121	linamarin degradation
AJAP_00415	PWY-5176	coumarin biosynthesis (via 2-coumarate)
AJAP_00415	PWY-6002	lotaustralin degradation
AJAP_00415	PWY-6788	cellulose degradation II (fungi)
AJAP_00415	PWY-7091	linustatin bioactivation
AJAP_00415	PWY-7092	neolinustatin bioactivation
AJAP_00415	PWY-7913	AJAP_00415
AJAP_00520	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AJAP_00520	PWY-7820	AJAP_00520
AJAP_00775	PWY-4981	L-proline biosynthesis II (from arginine)
AJAP_00785	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_00785	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_00940	PWY-3961	phosphopantothenate biosynthesis II
AJAP_00950	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AJAP_01010	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AJAP_01140	PWY-7723	AJAP_01140
AJAP_01145	PWY-7723	AJAP_01145
AJAP_01190	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AJAP_01190	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AJAP_01190	PWY-7622	UDP-galactofuranose biosynthesis
AJAP_01300	PWY-6143	CMP-pseudaminate biosynthesis
AJAP_01310	PWY-6143	CMP-pseudaminate biosynthesis
AJAP_01310	PWY-7330	UDP-<i>N</i>-acetyl-&beta;-L-fucosamine biosynthesis
AJAP_01310	PWY-7331	UDP-<i>N</i>-acetyl-&beta;-L-quinovosamine biosynthesis
AJAP_01310	PWY-7332	superpathway of UDP-<I>N</i>-acetylglucosamine-derived O-antigen building blocks biosynthesis
AJAP_01310	PWY-7719	AJAP_01310
AJAP_01315	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AJAP_01485	PWY-4381	fatty acid biosynthesis initiation I
AJAP_01550	PWY-5108	L-isoleucine biosynthesis V
AJAP_01550	PWY-5132	humulone biosynthesis
AJAP_01550	PWY-5133	cohumulone biosynthesis
AJAP_01550	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AJAP_01550	PWY-7118	chitin degradation to ethanol
AJAP_01550	PWY-7857	AJAP_01550
AJAP_01755	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AJAP_01815	PWY-6123	inosine-5'-phosphate biosynthesis I
AJAP_01815	PWY-6124	inosine-5'-phosphate biosynthesis II
AJAP_01815	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AJAP_01815	PWY-7234	inosine-5'-phosphate biosynthesis III
AJAP_01860	PWY-6703	preQ<sub>0</sub> biosynthesis
AJAP_01950	PWY-6703	preQ<sub>0</sub> biosynthesis
AJAP_02015	PWY-1361	benzoyl-CoA degradation I (aerobic)
AJAP_02020	PWY-1361	benzoyl-CoA degradation I (aerobic)
AJAP_02045	PWY-7533	gliotoxin biosynthesis
AJAP_02060	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_02060	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_02090	PWY-6409	pyoverdine I biosynthesis
AJAP_02090	PWY-6562	norspermidine biosynthesis
AJAP_02090	PWY-761	rhizobactin 1021 biosynthesis
AJAP_02090	PWY-7855	AJAP_02090
AJAP_02090	PWY-7988	AJAP_02090
AJAP_02175	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AJAP_02175	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AJAP_02175	PWY-6897	thiamin salvage II
AJAP_02175	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AJAP_02175	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AJAP_02175	PWY-7356	thiamin salvage IV (yeast)
AJAP_02175	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AJAP_02180	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AJAP_02180	PWY-7806	AJAP_02180
AJAP_02190	PWY-6891	thiazole biosynthesis II (Bacillus)
AJAP_02190	PWY-6892	thiazole biosynthesis I (E. coli)
AJAP_02205	PWY-6910	hydroxymethylpyrimidine salvage
AJAP_02205	PWY-7356	thiamin salvage IV (yeast)
AJAP_02205	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AJAP_02215	PWY-6910	hydroxymethylpyrimidine salvage
AJAP_02215	PWY-7356	thiamin salvage IV (yeast)
AJAP_02215	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AJAP_02220	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AJAP_02225	PWY-5941	glycogen degradation II (eukaryotic)
AJAP_02255	PWY-5669	phosphatidylethanolamine biosynthesis I
AJAP_02260	PWY-5669	phosphatidylethanolamine biosynthesis I
AJAP_02285	PWY-6823	molybdenum cofactor biosynthesis
AJAP_02350	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AJAP_02480	PWY-6823	molybdenum cofactor biosynthesis
AJAP_02490	PWY-6823	molybdenum cofactor biosynthesis
AJAP_02490	PWY-7887	AJAP_02490
AJAP_02510	PWY-6823	molybdenum cofactor biosynthesis
AJAP_02570	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AJAP_02570	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AJAP_02570	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AJAP_02570	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AJAP_02570	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AJAP_02570	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AJAP_02570	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AJAP_02570	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AJAP_02605	PWY-7942	AJAP_02605
AJAP_02665	PWY-6854	ethylene biosynthesis III (microbes)
AJAP_02675	PWY-5874	heme degradation
AJAP_02685	PWY-6840	homoglutathione biosynthesis
AJAP_02685	PWY-7255	ergothioneine biosynthesis I (bacteria)
AJAP_02720	PWY-6807	xyloglucan degradation II (exoglucanase)
AJAP_02820	PWY-5704	urea degradation II
AJAP_02825	PWY-5704	urea degradation II
AJAP_02830	PWY-5704	urea degradation II
AJAP_02900	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_02900	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_03025	PWY-4261	glycerol degradation I
AJAP_03025	PWY-6118	glycerol-3-phosphate shuttle
AJAP_03025	PWY-6952	glycerophosphodiester degradation
AJAP_03045	PWY-7908	AJAP_03045
AJAP_03095	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AJAP_03095	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AJAP_03095	PWY-6406	salicylate biosynthesis I
AJAP_03100	PWY-6012	acyl carrier protein metabolism I
AJAP_03100	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AJAP_03100	PWY-6289	petrobactin biosynthesis
AJAP_03175	PWY-4041	&gamma;-glutamyl cycle
AJAP_03175	PWY-7942	AJAP_03175
AJAP_03205	PWY-3121	linamarin degradation
AJAP_03205	PWY-5176	coumarin biosynthesis (via 2-coumarate)
AJAP_03205	PWY-6002	lotaustralin degradation
AJAP_03205	PWY-6788	cellulose degradation II (fungi)
AJAP_03205	PWY-7091	linustatin bioactivation
AJAP_03205	PWY-7092	neolinustatin bioactivation
AJAP_03205	PWY-7913	AJAP_03205
AJAP_03435	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AJAP_03520	PWY-7884	AJAP_03520
AJAP_03535	PWY-6317	galactose degradation I (Leloir pathway)
AJAP_03535	PWY-6527	stachyose degradation
AJAP_03760	PWY-6823	molybdenum cofactor biosynthesis
AJAP_03770	PWY-3801	sucrose degradation II (sucrose synthase)
AJAP_03770	PWY-6527	stachyose degradation
AJAP_03770	PWY-7238	sucrose biosynthesis II
AJAP_03770	PWY-7343	UDP-glucose biosynthesis
AJAP_03770	PWY-7817	AJAP_03770
AJAP_03860	PWY-6902	chitin degradation II
AJAP_03860	PWY-7822	AJAP_03860
AJAP_03860	PWY-7883	AJAP_03860
AJAP_03865	PWY-5108	L-isoleucine biosynthesis V
AJAP_03865	PWY-5132	humulone biosynthesis
AJAP_03865	PWY-5133	cohumulone biosynthesis
AJAP_03865	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AJAP_03865	PWY-7118	chitin degradation to ethanol
AJAP_03865	PWY-7857	AJAP_03865
AJAP_03880	PWY-7921	AJAP_03880
AJAP_03880	PWY-7922	AJAP_03880
AJAP_03880	PWY-7979	AJAP_03880
AJAP_03900	PWY-5958	acridone alkaloid biosynthesis
AJAP_03900	PWY-6543	4-aminobenzoate biosynthesis
AJAP_03900	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AJAP_03900	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AJAP_03960	PWY-7560	methylerythritol phosphate pathway II
AJAP_03985	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AJAP_04015	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AJAP_04145	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_04145	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_04145	PWY-7812	AJAP_04145
AJAP_04190	PWY-1042	glycolysis IV (plant cytosol)
AJAP_04190	PWY-1622	formaldehyde assimilation I (serine pathway)
AJAP_04190	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AJAP_04190	PWY-5484	glycolysis II (from fructose 6-phosphate)
AJAP_04190	PWY-5723	Rubisco shunt
AJAP_04190	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_04190	PWY-6886	1-butanol autotrophic biosynthesis
AJAP_04190	PWY-6901	superpathway of glucose and xylose degradation
AJAP_04190	PWY-7003	glycerol degradation to butanol
AJAP_04190	PWY-7124	ethylene biosynthesis V (engineered)
AJAP_04190	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AJAP_04335	PWY-7285	methylwyosine biosynthesis
AJAP_04335	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AJAP_04390	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_04445	PWY-801	L-homocysteine and L-cysteine interconversion
AJAP_04575	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AJAP_04575	PWY-6837	fatty acid beta-oxidation V (unsaturated, odd number, di-isomerase-dependent)
AJAP_04575	PWY-6920	6-gingerol analog biosynthesis
AJAP_04575	PWY-7007	methyl ketone biosynthesis
AJAP_04575	PWY-7288	fatty acid &beta;-oxidation (peroxisome, yeast)
AJAP_04575	PWY-7291	oleate &beta;-oxidation (isomerase-dependent, yeast)
AJAP_04575	PWY-7337	10-<i>cis</i>-heptadecenoyl-CoA degradation (yeast)
AJAP_04575	PWY-7338	10-<i>trans</i>-heptadecenoyl-CoA degradation (reductase-dependent, yeast)
AJAP_04575	PWY-7340	9-<i>cis</i>, 11-<i>trans</i>-octadecadienoyl-CoA degradation (isomerase-dependent, yeast)
AJAP_04575	PWY-735	jasmonic acid biosynthesis
AJAP_04575	PWY-7574	propanoyl-CoA degradation II
AJAP_04575	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AJAP_04575	PWY-7726	AJAP_04575
AJAP_04575	PWY-7854	AJAP_04575
AJAP_04575	PWY-7858	AJAP_04575
AJAP_04585	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_04585	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_04620	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AJAP_04620	PWY-6596	adenosine nucleotides degradation I
AJAP_04620	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AJAP_04680	PWY-5392	reductive TCA cycle II
AJAP_04680	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AJAP_04680	PWY-5690	TCA cycle II (plants and fungi)
AJAP_04680	PWY-5913	TCA cycle VI (obligate autotrophs)
AJAP_04680	PWY-6728	methylaspartate cycle
AJAP_04680	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_04680	PWY-7254	TCA cycle VII (acetate-producers)
AJAP_04680	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AJAP_04685	PWY-101	photosynthesis light reactions
AJAP_04695	PWY-5484	glycolysis II (from fructose 6-phosphate)
AJAP_04720	PWY-7560	methylerythritol phosphate pathway II
AJAP_04840	PWY-7158	L-phenylalanine degradation V
AJAP_04985	PWY-6749	CMP-legionaminate biosynthesis I
AJAP_05000	PWY-3861	mannitol degradation II
AJAP_05000	PWY-3881	mannitol biosynthesis
AJAP_05000	PWY-5659	GDP-mannose biosynthesis
AJAP_05000	PWY-6992	1,5-anhydrofructose degradation
AJAP_05000	PWY-7456	mannan degradation
AJAP_05000	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
AJAP_05000	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AJAP_05035	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AJAP_05305	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AJAP_05375	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_05375	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_05425	PWY-4381	fatty acid biosynthesis initiation I
AJAP_05425	PWY-5743	3-hydroxypropanoate cycle
AJAP_05425	PWY-5744	glyoxylate assimilation
AJAP_05425	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_05425	PWY-6722	candicidin biosynthesis
AJAP_05440	PWY-7799	AJAP_05440
AJAP_05440	PWY-7800	AJAP_05440
AJAP_05490	PWY-1361	benzoyl-CoA degradation I (aerobic)
AJAP_05490	PWY-5109	2-methylbutanoate biosynthesis
AJAP_05490	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AJAP_05490	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AJAP_05490	PWY-5177	glutaryl-CoA degradation
AJAP_05490	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_05490	PWY-6435	4-hydroxybenzoate biosynthesis V
AJAP_05490	PWY-6583	pyruvate fermentation to butanol I
AJAP_05490	PWY-6863	pyruvate fermentation to hexanol
AJAP_05490	PWY-6883	pyruvate fermentation to butanol II
AJAP_05490	PWY-6944	androstenedione degradation
AJAP_05490	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AJAP_05490	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AJAP_05490	PWY-7007	methyl ketone biosynthesis
AJAP_05490	PWY-7046	4-coumarate degradation (anaerobic)
AJAP_05490	PWY-7094	fatty acid salvage
AJAP_05490	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AJAP_05490	PWY-735	jasmonic acid biosynthesis
AJAP_05490	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AJAP_05490	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AJAP_05490	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AJAP_05490	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AJAP_05490	PWY-7726	AJAP_05490
AJAP_05490	PWY-7778	AJAP_05490
AJAP_05490	PWY-7779	AJAP_05490
AJAP_05605	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_05640	PWY-6420	pyrroloquinoline quinone biosynthesis
AJAP_05670	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_05670	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_05700	PWY-6527	stachyose degradation
AJAP_05800	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AJAP_05800	PWY-7820	AJAP_05800
AJAP_05915	PWY-2582	brassinosteroid biosynthesis II
AJAP_05915	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AJAP_05915	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AJAP_05915	PWY-6948	sitosterol degradation to androstenedione
AJAP_05915	PWY-699	brassinosteroid biosynthesis I
AJAP_05915	PWY-7299	progesterone biosynthesis
AJAP_06020	PWY-2941	L-lysine biosynthesis II
AJAP_06020	PWY-2942	L-lysine biosynthesis III
AJAP_06020	PWY-5097	L-lysine biosynthesis VI
AJAP_06035	PWY-702	L-methionine biosynthesis II
AJAP_06040	PWY-7980	AJAP_06040
AJAP_06115	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_06115	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_06115	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_06145	PWY-7980	AJAP_06145
AJAP_06155	PWY-7980	AJAP_06155
AJAP_06170	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AJAP_06185	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AJAP_06185	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AJAP_06185	PWY-7953	AJAP_06185
AJAP_06335	PWY-1361	benzoyl-CoA degradation I (aerobic)
AJAP_06335	PWY-5109	2-methylbutanoate biosynthesis
AJAP_06335	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AJAP_06335	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AJAP_06335	PWY-5177	glutaryl-CoA degradation
AJAP_06335	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_06335	PWY-6435	4-hydroxybenzoate biosynthesis V
AJAP_06335	PWY-6583	pyruvate fermentation to butanol I
AJAP_06335	PWY-6863	pyruvate fermentation to hexanol
AJAP_06335	PWY-6883	pyruvate fermentation to butanol II
AJAP_06335	PWY-6944	androstenedione degradation
AJAP_06335	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AJAP_06335	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AJAP_06335	PWY-7007	methyl ketone biosynthesis
AJAP_06335	PWY-7046	4-coumarate degradation (anaerobic)
AJAP_06335	PWY-7094	fatty acid salvage
AJAP_06335	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AJAP_06335	PWY-735	jasmonic acid biosynthesis
AJAP_06335	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AJAP_06335	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AJAP_06335	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AJAP_06335	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AJAP_06335	PWY-7726	AJAP_06335
AJAP_06335	PWY-7778	AJAP_06335
AJAP_06335	PWY-7779	AJAP_06335
AJAP_06410	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_06410	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_06410	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_06410	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_06420	PWY-3781	aerobic respiration I (cytochrome c)
AJAP_06420	PWY-4521	arsenite oxidation I (respiratory)
AJAP_06420	PWY-6692	Fe(II) oxidation
AJAP_06420	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AJAP_06430	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AJAP_06465	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AJAP_06465	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AJAP_06465	PWY-7242	D-fructuronate degradation
AJAP_06465	PWY-7310	D-glucosaminate degradation
AJAP_06465	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AJAP_06475	PWY-5381	pyridine nucleotide cycling (plants)
AJAP_06490	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AJAP_06505	PWY-6936	seleno-amino acid biosynthesis
AJAP_06510	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AJAP_06510	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AJAP_06525	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AJAP_06525	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AJAP_06655	PWY-6803	phosphatidylcholine acyl editing
AJAP_06655	PWY-7409	phospholipid remodeling (phosphatidylethanolamine, yeast)
AJAP_06655	PWY-7416	phospholipid remodeling (phosphatidylcholine, yeast)
AJAP_06655	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
AJAP_06655	PWY-7783	AJAP_06655
AJAP_06695	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AJAP_06695	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AJAP_06820	PWY-6855	chitin degradation I (archaea)
AJAP_06820	PWY-6902	chitin degradation II
AJAP_06820	PWY-7822	AJAP_06820
AJAP_06830	PWY-6855	chitin degradation I (archaea)
AJAP_06830	PWY-6902	chitin degradation II
AJAP_06830	PWY-7822	AJAP_06830
AJAP_07585	PWY-3341	L-proline biosynthesis III
AJAP_07585	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AJAP_07620	PWY-5741	ethylmalonyl-CoA pathway
AJAP_07620	PWY-5743	3-hydroxypropanoate cycle
AJAP_07620	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_07620	PWY-6728	methylaspartate cycle
AJAP_07620	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AJAP_07620	PWY-7854	AJAP_07620
AJAP_07715	PWY-3861	mannitol degradation II
AJAP_07715	PWY-3881	mannitol biosynthesis
AJAP_07715	PWY-5659	GDP-mannose biosynthesis
AJAP_07715	PWY-6992	1,5-anhydrofructose degradation
AJAP_07715	PWY-7456	mannan degradation
AJAP_07715	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
AJAP_07715	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AJAP_07760	PWY-5941	glycogen degradation II (eukaryotic)
AJAP_07760	PWY-6731	starch degradation III
AJAP_07760	PWY-6737	starch degradation V
AJAP_07760	PWY-7238	sucrose biosynthesis II
AJAP_07795	PWY-5331	taurine biosynthesis
AJAP_08025	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_08030	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_08030	PWY-7118	chitin degradation to ethanol
AJAP_08030	PWY-7294	xylose degradation IV
AJAP_08030	PWY-7295	L-arabinose degradation IV
AJAP_08030	PWY-7854	AJAP_08030
AJAP_08070	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
AJAP_08070	PWY-622	starch biosynthesis
AJAP_08070	PWY-7900	AJAP_08070
AJAP_08125	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AJAP_08130	PWY-7887	AJAP_08130
AJAP_08130	PWY-7892	AJAP_08130
AJAP_08150	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AJAP_08150	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AJAP_08150	PWY-6936	seleno-amino acid biosynthesis
AJAP_08150	PWY-702	L-methionine biosynthesis II
AJAP_08180	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_08225	PWY-5101	L-isoleucine biosynthesis II
AJAP_08225	PWY-5103	L-isoleucine biosynthesis III
AJAP_08225	PWY-5104	L-isoleucine biosynthesis IV
AJAP_08225	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AJAP_08235	PWY-5101	L-isoleucine biosynthesis II
AJAP_08235	PWY-5103	L-isoleucine biosynthesis III
AJAP_08235	PWY-5104	L-isoleucine biosynthesis IV
AJAP_08235	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AJAP_08235	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AJAP_08235	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AJAP_08235	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AJAP_08240	PWY-5101	L-isoleucine biosynthesis II
AJAP_08240	PWY-5103	L-isoleucine biosynthesis III
AJAP_08240	PWY-5104	L-isoleucine biosynthesis IV
AJAP_08240	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AJAP_08240	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AJAP_08240	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AJAP_08240	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AJAP_08245	PWY-5103	L-isoleucine biosynthesis III
AJAP_08245	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AJAP_08295	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AJAP_08300	PWY-5101	L-isoleucine biosynthesis II
AJAP_08300	PWY-6871	3-methylbutanol biosynthesis
AJAP_08410	PWY-5331	taurine biosynthesis
AJAP_08420	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_08455	PWY-5506	methanol oxidation to formaldehyde IV
AJAP_08705	PWY-5198	factor 420 biosynthesis
AJAP_08715	PWY-5667	CDP-diacylglycerol biosynthesis I
AJAP_08715	PWY-5981	CDP-diacylglycerol biosynthesis III
AJAP_08715	PWY-7902	AJAP_08715
AJAP_08720	PWY-5331	taurine biosynthesis
AJAP_08795	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AJAP_08795	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AJAP_08795	PWY-6896	thiamin salvage I
AJAP_08795	PWY-6897	thiamin salvage II
AJAP_08875	PWY-5750	itaconate biosynthesis
AJAP_08875	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_08875	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AJAP_08985	PWY-7851	AJAP_08985
AJAP_09095	PWY-381	nitrate reduction II (assimilatory)
AJAP_09095	PWY-5675	nitrate reduction V (assimilatory)
AJAP_09095	PWY-6549	L-glutamine biosynthesis III
AJAP_09095	PWY-6963	ammonia assimilation cycle I
AJAP_09095	PWY-6964	ammonia assimilation cycle II
AJAP_09130	PWY-1622	formaldehyde assimilation I (serine pathway)
AJAP_09130	PWY-181	photorespiration
AJAP_09130	PWY-2161	folate polyglutamylation
AJAP_09130	PWY-2201	folate transformations I
AJAP_09130	PWY-3661	glycine betaine degradation I
AJAP_09130	PWY-3661-1	glycine betaine degradation II (mammalian)
AJAP_09130	PWY-3841	folate transformations II
AJAP_09130	PWY-5497	purine nucleobases degradation II (anaerobic)
AJAP_09135	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AJAP_09135	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AJAP_09160	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_09160	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_09160	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_09160	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_09305	PWY-5451	acetone degradation I (to methylglyoxal)
AJAP_09305	PWY-6588	pyruvate fermentation to acetone
AJAP_09305	PWY-6876	isopropanol biosynthesis
AJAP_09305	PWY-7466	acetone degradation III (to propane-1,2-diol)
AJAP_09335	PWY-6041	4-sulfocatechol degradation
AJAP_09340	PWY-6041	4-sulfocatechol degradation
AJAP_09345	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AJAP_09460	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AJAP_09585	PWY-7883	AJAP_09585
AJAP_09610	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_09610	PWY-7118	chitin degradation to ethanol
AJAP_09610	PWY-7294	xylose degradation IV
AJAP_09610	PWY-7295	L-arabinose degradation IV
AJAP_09610	PWY-7854	AJAP_09610
AJAP_09660	PWY-5497	purine nucleobases degradation II (anaerobic)
AJAP_09660	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AJAP_09660	PWY-6538	caffeine degradation III (bacteria, via demethylation)
AJAP_09660	PWY-6596	adenosine nucleotides degradation I
AJAP_09660	PWY-6606	guanosine nucleotides degradation II
AJAP_09660	PWY-6607	guanosine nucleotides degradation I
AJAP_09660	PWY-6608	guanosine nucleotides degradation III
AJAP_09660	PWY-6999	theophylline degradation
AJAP_09695	PWY-5691	urate degradation to allantoin I
AJAP_09700	PWY-5691	urate degradation to allantoin I
AJAP_09700	PWY-7394	urate degradation to allantoin II
AJAP_09700	PWY-7849	AJAP_09700
AJAP_09705	PWY-5691	urate degradation to allantoin I
AJAP_09705	PWY-7394	urate degradation to allantoin II
AJAP_09705	PWY-7849	AJAP_09705
AJAP_09715	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
AJAP_09715	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AJAP_09720	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
AJAP_09865	PWY-6829	tRNA methylation (yeast)
AJAP_09865	PWY-7285	methylwyosine biosynthesis
AJAP_09865	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AJAP_09940	PWY-5667	CDP-diacylglycerol biosynthesis I
AJAP_09940	PWY-5981	CDP-diacylglycerol biosynthesis III
AJAP_09940	PWY-7817	AJAP_09940
AJAP_10030	PWY-5098	chlorophyll <i>a</i> degradation I
AJAP_10030	PWY-6927	chlorophyll <i>a</i> degradation II
AJAP_10030	PWY-7164	chlorophyll <i>a</i> degradation III
AJAP_10110	PWY-2201	folate transformations I
AJAP_10110	PWY-3841	folate transformations II
AJAP_10110	PWY-7977	AJAP_10110
AJAP_10145	PWY-7560	methylerythritol phosphate pathway II
AJAP_10170	PWY-7799	AJAP_10170
AJAP_10170	PWY-7800	AJAP_10170
AJAP_10190	PWY-6421	arsenate detoxification III (mycothiol)
AJAP_10225	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AJAP_10225	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AJAP_10225	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AJAP_10225	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AJAP_10435	PWY-4381	fatty acid biosynthesis initiation I
AJAP_10465	PWY-6891	thiazole biosynthesis II (Bacillus)
AJAP_10465	PWY-6892	thiazole biosynthesis I (E. coli)
AJAP_10465	PWY-7560	methylerythritol phosphate pathway II
AJAP_10545	PWY-5392	reductive TCA cycle II
AJAP_10545	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AJAP_10545	PWY-5690	TCA cycle II (plants and fungi)
AJAP_10545	PWY-5913	TCA cycle VI (obligate autotrophs)
AJAP_10545	PWY-6728	methylaspartate cycle
AJAP_10545	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_10545	PWY-7254	TCA cycle VII (acetate-producers)
AJAP_10545	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AJAP_10630	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AJAP_10630	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AJAP_10660	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AJAP_10660	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AJAP_10690	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AJAP_10690	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AJAP_10725	PWY-5057	L-valine degradation II
AJAP_10725	PWY-5076	L-leucine degradation III
AJAP_10725	PWY-5078	L-isoleucine degradation II
AJAP_10725	PWY-5101	L-isoleucine biosynthesis II
AJAP_10725	PWY-5103	L-isoleucine biosynthesis III
AJAP_10725	PWY-5104	L-isoleucine biosynthesis IV
AJAP_10725	PWY-5108	L-isoleucine biosynthesis V
AJAP_10725	PWY-7767	AJAP_10725
AJAP_10730	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AJAP_10730	PWY-6269	adenosylcobalamin salvage from cobinamide II
AJAP_10730	PWY-7964	AJAP_10730
AJAP_10730	PWY-7965	AJAP_10730
AJAP_10730	PWY-7966	AJAP_10730
AJAP_10730	PWY-7967	AJAP_10730
AJAP_10730	PWY-7968	AJAP_10730
AJAP_10730	PWY-7969	AJAP_10730
AJAP_10730	PWY-7970	AJAP_10730
AJAP_10735	PWY-7560	methylerythritol phosphate pathway II
AJAP_10750	PWY-6123	inosine-5'-phosphate biosynthesis I
AJAP_10750	PWY-6124	inosine-5'-phosphate biosynthesis II
AJAP_10750	PWY-7234	inosine-5'-phosphate biosynthesis III
AJAP_10805	PWY-3781	aerobic respiration I (cytochrome c)
AJAP_10805	PWY-4521	arsenite oxidation I (respiratory)
AJAP_10805	PWY-6692	Fe(II) oxidation
AJAP_10805	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AJAP_10850	PWY-3781	aerobic respiration I (cytochrome c)
AJAP_10850	PWY-6692	Fe(II) oxidation
AJAP_10850	PWY-7082	ammonia oxidation IV (autotrophic ammonia oxidizers)
AJAP_10850	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AJAP_10920	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AJAP_10920	PWY-5743	3-hydroxypropanoate cycle
AJAP_10920	PWY-5744	glyoxylate assimilation
AJAP_10920	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_10920	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_10920	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AJAP_10920	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AJAP_10925	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AJAP_10925	PWY-5743	3-hydroxypropanoate cycle
AJAP_10925	PWY-5744	glyoxylate assimilation
AJAP_10925	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_10925	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_10925	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AJAP_10925	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AJAP_10930	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AJAP_10935	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AJAP_10960	PWY-5316	nicotine biosynthesis
AJAP_10960	PWY-7342	superpathway of nicotine biosynthesis
AJAP_10965	PWY-5316	nicotine biosynthesis
AJAP_10965	PWY-7342	superpathway of nicotine biosynthesis
AJAP_10970	PWY-5316	nicotine biosynthesis
AJAP_10970	PWY-5381	pyridine nucleotide cycling (plants)
AJAP_10970	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AJAP_10970	PWY-7342	superpathway of nicotine biosynthesis
AJAP_11020	PWY-5482	pyruvate fermentation to acetate II
AJAP_11020	PWY-5485	pyruvate fermentation to acetate IV
AJAP_11020	PWY-5497	purine nucleobases degradation II (anaerobic)
AJAP_11180	PWY-6891	thiazole biosynthesis II (Bacillus)
AJAP_11180	PWY-6892	thiazole biosynthesis I (E. coli)
AJAP_11180	PWY-7560	methylerythritol phosphate pathway II
AJAP_11220	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_11220	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_11250	PWY-4702	phytate degradation I
AJAP_11295	PWY-5958	acridone alkaloid biosynthesis
AJAP_11295	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AJAP_11295	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AJAP_11325	PWY-381	nitrate reduction II (assimilatory)
AJAP_11325	PWY-5675	nitrate reduction V (assimilatory)
AJAP_11325	PWY-6549	L-glutamine biosynthesis III
AJAP_11325	PWY-6963	ammonia assimilation cycle I
AJAP_11325	PWY-6964	ammonia assimilation cycle II
AJAP_11380	PWY-6164	3-dehydroquinate biosynthesis I
AJAP_11435	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AJAP_11510	PWY-7884	AJAP_11510
AJAP_11890	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AJAP_11890	PWY-5491	diethylphosphate degradation
AJAP_11895	PWY-2201	folate transformations I
AJAP_11895	PWY-3841	folate transformations II
AJAP_11900	PWY-7533	gliotoxin biosynthesis
AJAP_12380	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AJAP_12380	PWY-7820	AJAP_12380
AJAP_12395	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AJAP_12395	PWY-7536	2-amino-3-hydroxycyclopent-2-enone biosynthesis
AJAP_12665	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AJAP_12665	PWY-5743	3-hydroxypropanoate cycle
AJAP_12665	PWY-5744	glyoxylate assimilation
AJAP_12665	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_12665	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_12665	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AJAP_12665	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AJAP_12730	PWY-7130	L-glucose degradation
AJAP_12735	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AJAP_12735	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AJAP_12735	PWY-7242	D-fructuronate degradation
AJAP_12735	PWY-7310	D-glucosaminate degradation
AJAP_12735	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AJAP_12760	PWY-7352	daunorubicin biosynthesis
AJAP_12760	PWY-7354	aclacinomycin biosynthesis
AJAP_13145	PWY-6749	CMP-legionaminate biosynthesis I
AJAP_13180	PWY-3121	linamarin degradation
AJAP_13180	PWY-5176	coumarin biosynthesis (via 2-coumarate)
AJAP_13180	PWY-6002	lotaustralin degradation
AJAP_13180	PWY-6788	cellulose degradation II (fungi)
AJAP_13180	PWY-7091	linustatin bioactivation
AJAP_13180	PWY-7092	neolinustatin bioactivation
AJAP_13180	PWY-7913	AJAP_13180
AJAP_13445	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AJAP_13500	PWY-5642	2,4-dinitrotoluene degradation
AJAP_13735	PWY-7851	AJAP_13735
AJAP_13815	PWY-4261	glycerol degradation I
AJAP_13860	PWY-6807	xyloglucan degradation II (exoglucanase)
AJAP_13905	PWY-7019	butirosin biosynthesis
AJAP_13915	PWY-6807	xyloglucan degradation II (exoglucanase)
AJAP_14065	PWY-6902	chitin degradation II
AJAP_14065	PWY-7822	AJAP_14065
AJAP_14065	PWY-7883	AJAP_14065
AJAP_14100	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AJAP_14195	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AJAP_14195	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AJAP_14200	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AJAP_14205	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AJAP_14205	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AJAP_14215	PWY-4981	L-proline biosynthesis II (from arginine)
AJAP_14215	PWY-4984	urea cycle
AJAP_14215	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AJAP_14225	PWY-4983	L-citrulline-nitric oxide cycle
AJAP_14225	PWY-4984	urea cycle
AJAP_14225	PWY-5	canavanine biosynthesis
AJAP_14225	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AJAP_14225	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AJAP_14230	PWY-4983	L-citrulline-nitric oxide cycle
AJAP_14230	PWY-4984	urea cycle
AJAP_14230	PWY-5	canavanine biosynthesis
AJAP_14230	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AJAP_14230	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AJAP_14290	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AJAP_14290	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AJAP_14290	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AJAP_14300	PWY-6898	thiamin salvage III
AJAP_14300	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AJAP_14300	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AJAP_14300	PWY-7356	thiamin salvage IV (yeast)
AJAP_14330	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AJAP_14335	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AJAP_14335	PWY-7177	UTP and CTP dephosphorylation II
AJAP_14335	PWY-7185	UTP and CTP dephosphorylation I
AJAP_14415	PWY-7205	CMP phosphorylation
AJAP_14515	PWY-6486	D-galacturonate degradation II
AJAP_14515	PWY-6497	D-galactarate degradation II
AJAP_14515	PWY-6499	D-glucarate degradation II
AJAP_14515	PWY-6501	D-glucuronate degradation II
AJAP_14605	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AJAP_14740	PWY-5651	L-tryptophan degradation to 2-amino-3-carboxymuconate semialdehyde
AJAP_14740	PWY-6309	L-tryptophan degradation XI (mammalian, via kynurenine)
AJAP_14740	PWY-7717	AJAP_14740
AJAP_14740	PWY-7733	AJAP_14740
AJAP_14740	PWY-7734	AJAP_14740
AJAP_14740	PWY-7765	AJAP_14740
AJAP_14880	PWY-7378	aminopropanol phosphate biosynthesis II
AJAP_15225	PWY-4261	glycerol degradation I
AJAP_15240	PWY-4261	glycerol degradation I
AJAP_15245	PWY-4261	glycerol degradation I
AJAP_15245	PWY-6118	glycerol-3-phosphate shuttle
AJAP_15245	PWY-6952	glycerophosphodiester degradation
AJAP_15305	PWY-723	alkylnitronates degradation
AJAP_15500	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_15500	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_15500	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_15500	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_15665	PWY-5941	glycogen degradation II (eukaryotic)
AJAP_15750	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AJAP_15765	PWY-5033	nicotinate degradation II
AJAP_15765	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AJAP_15765	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AJAP_15765	PWY-6993	nicotine degradation II (pyrrolidine pathway)
AJAP_15765	PWY-7128	nicotine degradation III (VPP pathway)
AJAP_15765	PWY-722	nicotinate degradation I
AJAP_15830	PWY-1042	glycolysis IV (plant cytosol)
AJAP_15830	PWY-1622	formaldehyde assimilation I (serine pathway)
AJAP_15830	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AJAP_15830	PWY-5484	glycolysis II (from fructose 6-phosphate)
AJAP_15830	PWY-5723	Rubisco shunt
AJAP_15830	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_15830	PWY-6886	1-butanol autotrophic biosynthesis
AJAP_15830	PWY-6901	superpathway of glucose and xylose degradation
AJAP_15830	PWY-7003	glycerol degradation to butanol
AJAP_15830	PWY-7124	ethylene biosynthesis V (engineered)
AJAP_15830	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AJAP_15910	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AJAP_15915	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AJAP_15925	PWY-1281	sulfoacetaldehyde degradation I
AJAP_15925	PWY-6637	sulfolactate degradation II
AJAP_15935	PWY-1281	sulfoacetaldehyde degradation I
AJAP_15935	PWY-5482	pyruvate fermentation to acetate II
AJAP_15935	PWY-5485	pyruvate fermentation to acetate IV
AJAP_15935	PWY-5497	purine nucleobases degradation II (anaerobic)
AJAP_15935	PWY-6637	sulfolactate degradation II
AJAP_16090	PWY-7908	AJAP_16090
AJAP_16150	PWY-5381	pyridine nucleotide cycling (plants)
AJAP_16150	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AJAP_16150	PWY-6596	adenosine nucleotides degradation I
AJAP_16150	PWY-6606	guanosine nucleotides degradation II
AJAP_16150	PWY-6607	guanosine nucleotides degradation I
AJAP_16150	PWY-6608	guanosine nucleotides degradation III
AJAP_16150	PWY-7185	UTP and CTP dephosphorylation I
AJAP_16150	PWY-7821	AJAP_16150
AJAP_16165	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_16165	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_16165	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_16165	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_16600	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
AJAP_16625	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AJAP_16655	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
AJAP_16705	PWY-6605	adenine and adenosine salvage II
AJAP_16705	PWY-6610	adenine and adenosine salvage IV
AJAP_16705	PWY-7805	AJAP_16705
AJAP_16705	PWY-7807	AJAP_16705
AJAP_16720	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_16855	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AJAP_16875	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AJAP_16875	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AJAP_16875	PWY-6936	seleno-amino acid biosynthesis
AJAP_16875	PWY-702	L-methionine biosynthesis II
AJAP_16915	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AJAP_16915	PWY-5743	3-hydroxypropanoate cycle
AJAP_16915	PWY-5744	glyoxylate assimilation
AJAP_16915	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_16915	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_16915	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AJAP_16915	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AJAP_16920	PWY-5392	reductive TCA cycle II
AJAP_16920	PWY-5537	pyruvate fermentation to acetate V
AJAP_16920	PWY-5538	pyruvate fermentation to acetate VI
AJAP_16920	PWY-5690	TCA cycle II (plants and fungi)
AJAP_16920	PWY-5913	TCA cycle VI (obligate autotrophs)
AJAP_16920	PWY-6728	methylaspartate cycle
AJAP_16920	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_16920	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AJAP_16925	PWY-5392	reductive TCA cycle II
AJAP_16925	PWY-5537	pyruvate fermentation to acetate V
AJAP_16925	PWY-5538	pyruvate fermentation to acetate VI
AJAP_16925	PWY-5690	TCA cycle II (plants and fungi)
AJAP_16925	PWY-5913	TCA cycle VI (obligate autotrophs)
AJAP_16925	PWY-6728	methylaspartate cycle
AJAP_16925	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_16925	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AJAP_16935	PWY-6695	oxalate degradation II
AJAP_16940	PWY-5392	reductive TCA cycle II
AJAP_16940	PWY-5537	pyruvate fermentation to acetate V
AJAP_16940	PWY-5538	pyruvate fermentation to acetate VI
AJAP_16940	PWY-5690	TCA cycle II (plants and fungi)
AJAP_16940	PWY-5913	TCA cycle VI (obligate autotrophs)
AJAP_16940	PWY-6728	methylaspartate cycle
AJAP_16940	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_16940	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AJAP_17025	PWY-43	putrescine biosynthesis II
AJAP_17085	PWY-6834	spermidine biosynthesis III
AJAP_17210	PWY-5663	tetrahydrobiopterin biosynthesis I
AJAP_17210	PWY-5664	tetrahydrobiopterin biosynthesis II
AJAP_17210	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AJAP_17210	PWY-6703	preQ<sub>0</sub> biosynthesis
AJAP_17210	PWY-6983	tetrahydrobiopterin biosynthesis III
AJAP_17210	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AJAP_17210	PWY-7852	AJAP_17210
AJAP_17275	PWY-3121	linamarin degradation
AJAP_17275	PWY-5176	coumarin biosynthesis (via 2-coumarate)
AJAP_17275	PWY-6002	lotaustralin degradation
AJAP_17275	PWY-6788	cellulose degradation II (fungi)
AJAP_17275	PWY-7091	linustatin bioactivation
AJAP_17275	PWY-7092	neolinustatin bioactivation
AJAP_17275	PWY-7913	AJAP_17275
AJAP_17325	PWY-4261	glycerol degradation I
AJAP_17365	PWY-6807	xyloglucan degradation II (exoglucanase)
AJAP_17445	PWY-7431	aromatic biogenic amine degradation (bacteria)
AJAP_17455	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AJAP_17455	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AJAP_17455	PWY-6896	thiamin salvage I
AJAP_17455	PWY-6897	thiamin salvage II
AJAP_17475	PWY-7205	CMP phosphorylation
AJAP_17485	PWY-5506	methanol oxidation to formaldehyde IV
AJAP_17490	PWY-7352	daunorubicin biosynthesis
AJAP_17490	PWY-7354	aclacinomycin biosynthesis
AJAP_17620	PWY-6807	xyloglucan degradation II (exoglucanase)
AJAP_17705	PWY-3121	linamarin degradation
AJAP_17705	PWY-5176	coumarin biosynthesis (via 2-coumarate)
AJAP_17705	PWY-6002	lotaustralin degradation
AJAP_17705	PWY-6788	cellulose degradation II (fungi)
AJAP_17705	PWY-7091	linustatin bioactivation
AJAP_17705	PWY-7092	neolinustatin bioactivation
AJAP_17705	PWY-7913	AJAP_17705
AJAP_17725	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AJAP_17870	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_17890	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_17970	PWY-6807	xyloglucan degradation II (exoglucanase)
AJAP_18210	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AJAP_18210	PWY-2201	folate transformations I
AJAP_18210	PWY-3841	folate transformations II
AJAP_18210	PWY-5030	L-histidine degradation III
AJAP_18210	PWY-5497	purine nucleobases degradation II (anaerobic)
AJAP_18210	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AJAP_18210	PWY-7909	AJAP_18210
AJAP_18215	PWY-5030	L-histidine degradation III
AJAP_18215	PWY-5497	purine nucleobases degradation II (anaerobic)
AJAP_18360	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AJAP_18420	PWY-1622	formaldehyde assimilation I (serine pathway)
AJAP_18420	PWY-5392	reductive TCA cycle II
AJAP_18420	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AJAP_18420	PWY-5690	TCA cycle II (plants and fungi)
AJAP_18420	PWY-5913	TCA cycle VI (obligate autotrophs)
AJAP_18420	PWY-6728	methylaspartate cycle
AJAP_18420	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_18420	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AJAP_18420	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AJAP_18485	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AJAP_18745	PWY-2941	L-lysine biosynthesis II
AJAP_18745	PWY-2942	L-lysine biosynthesis III
AJAP_18745	PWY-5097	L-lysine biosynthesis VI
AJAP_18745	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AJAP_18745	PWY-6559	spermidine biosynthesis II
AJAP_18745	PWY-6562	norspermidine biosynthesis
AJAP_18745	PWY-7153	grixazone biosynthesis
AJAP_18745	PWY-7977	AJAP_18745
AJAP_18755	PWY-6409	pyoverdine I biosynthesis
AJAP_18755	PWY-6562	norspermidine biosynthesis
AJAP_18755	PWY-761	rhizobactin 1021 biosynthesis
AJAP_18755	PWY-7855	AJAP_18755
AJAP_18755	PWY-7988	AJAP_18755
AJAP_19075	PWY-3341	L-proline biosynthesis III
AJAP_19075	PWY-4981	L-proline biosynthesis II (from arginine)
AJAP_19075	PWY-6344	L-ornithine degradation II (Stickland reaction)
AJAP_19140	PWY-7199	pyrimidine deoxyribonucleosides salvage
AJAP_19150	PWY-2941	L-lysine biosynthesis II
AJAP_19150	PWY-2942	L-lysine biosynthesis III
AJAP_19150	PWY-5097	L-lysine biosynthesis VI
AJAP_19270	PWY-6185	4-methylcatechol degradation (<i>ortho</i> cleavage)
AJAP_19300	PWY-4981	L-proline biosynthesis II (from arginine)
AJAP_19300	PWY-4984	urea cycle
AJAP_19300	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AJAP_19445	PWY-3341	L-proline biosynthesis III
AJAP_19445	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AJAP_19450	PWY-3341	L-proline biosynthesis III
AJAP_19450	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AJAP_19580	PWY-4381	fatty acid biosynthesis initiation I
AJAP_19730	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_19730	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_20030	PWY-7893	AJAP_20030
AJAP_20065	PWY-7893	AJAP_20065
AJAP_20110	PWY-6829	tRNA methylation (yeast)
AJAP_20255	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AJAP_20255	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AJAP_20255	PWY-5989	stearate biosynthesis II (bacteria and plants)
AJAP_20255	PWY-6113	superpathway of mycolate biosynthesis
AJAP_20255	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AJAP_20255	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AJAP_20255	PWY-7663	gondoate biosynthesis (anaerobic)
AJAP_20255	PWY-7664	oleate biosynthesis IV (anaerobic)
AJAP_20255	PWY-7858	AJAP_20255
AJAP_20255	PWYG-321	mycolate biosynthesis
AJAP_20380	PWY-7255	ergothioneine biosynthesis I (bacteria)
AJAP_20380	PWY-7550	ergothioneine biosynthesis II (fungi)
AJAP_20385	PWY-7255	ergothioneine biosynthesis I (bacteria)
AJAP_20390	PWY-7255	ergothioneine biosynthesis I (bacteria)
AJAP_20395	PWY-6840	homoglutathione biosynthesis
AJAP_20395	PWY-7255	ergothioneine biosynthesis I (bacteria)
AJAP_20515	PWY-5269	cardiolipin biosynthesis II
AJAP_20515	PWY-5668	cardiolipin biosynthesis I
AJAP_20515	PWY-7817	AJAP_20515
AJAP_20550	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AJAP_20560	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_20585	PWY-5194	siroheme biosynthesis
AJAP_20585	PWY-5196	factor 430 biosynthesis
AJAP_20585	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AJAP_20670	PWY-6483	ceramide degradation
AJAP_20670	PWY-7119	sphingolipid recycling and degradation (yeast)
AJAP_20715	PWY-5162	2-oxopentenoate degradation
AJAP_20720	PWY-5162	2-oxopentenoate degradation
AJAP_20720	PWY-5436	L-threonine degradation IV
AJAP_20720	PWY-5480	pyruvate fermentation to ethanol I
AJAP_20720	PWY-6587	pyruvate fermentation to ethanol III
AJAP_20720	PWY-7085	triethylamine degradation
AJAP_20720	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AJAP_20805	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_20805	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_20810	PWY-6527	stachyose degradation
AJAP_20855	PWY-6855	chitin degradation I (archaea)
AJAP_20855	PWY-6902	chitin degradation II
AJAP_20855	PWY-7822	AJAP_20855
AJAP_20870	PWY-6986	alginate degradation
AJAP_21135	PWY-5101	L-isoleucine biosynthesis II
AJAP_21135	PWY-5103	L-isoleucine biosynthesis III
AJAP_21135	PWY-5104	L-isoleucine biosynthesis IV
AJAP_21135	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AJAP_21205	PWY-5751	phenylethanol biosynthesis
AJAP_21390	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AJAP_21390	PWY-6164	3-dehydroquinate biosynthesis I
AJAP_21390	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AJAP_21445	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AJAP_21445	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AJAP_21445	PWY-5958	acridone alkaloid biosynthesis
AJAP_21445	PWY-6406	salicylate biosynthesis I
AJAP_21445	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AJAP_21445	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AJAP_21450	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AJAP_21495	PWY-4381	fatty acid biosynthesis initiation I
AJAP_21495	PWY-5743	3-hydroxypropanoate cycle
AJAP_21495	PWY-5744	glyoxylate assimilation
AJAP_21495	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_21495	PWY-6722	candicidin biosynthesis
AJAP_21575	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AJAP_21655	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AJAP_21740	PWY-6807	xyloglucan degradation II (exoglucanase)
AJAP_21835	PWY-6807	xyloglucan degradation II (exoglucanase)
AJAP_21935	PWY-7425	2-chloroacrylate degradation I
AJAP_22150	PWY-6832	2-aminoethylphosphonate degradation II
AJAP_22185	PWY-4381	fatty acid biosynthesis initiation I
AJAP_22185	PWY-5743	3-hydroxypropanoate cycle
AJAP_22185	PWY-5744	glyoxylate assimilation
AJAP_22185	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_22185	PWY-6722	candicidin biosynthesis
AJAP_22265	PWY-5098	chlorophyll <i>a</i> degradation I
AJAP_22265	PWY-6927	chlorophyll <i>a</i> degradation II
AJAP_22265	PWY-7164	chlorophyll <i>a</i> degradation III
AJAP_22360	PWY-7437	protein <i>O</i>-[<i>N</i>-acetyl]-glucosylation
AJAP_22430	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AJAP_22430	PWY-7494	choline degradation IV
AJAP_22540	PWY-4981	L-proline biosynthesis II (from arginine)
AJAP_22540	PWY-4984	urea cycle
AJAP_22540	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AJAP_22595	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_22600	PWY-6164	3-dehydroquinate biosynthesis I
AJAP_22645	PWY-6012	acyl carrier protein metabolism I
AJAP_22645	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AJAP_22645	PWY-6289	petrobactin biosynthesis
AJAP_22660	PWY-4381	fatty acid biosynthesis initiation I
AJAP_22675	PWY-6012	acyl carrier protein metabolism I
AJAP_22675	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AJAP_22675	PWY-6289	petrobactin biosynthesis
AJAP_22690	PWY-6012	acyl carrier protein metabolism I
AJAP_22690	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AJAP_22690	PWY-6289	petrobactin biosynthesis
AJAP_22730	PWY-6855	chitin degradation I (archaea)
AJAP_22730	PWY-6902	chitin degradation II
AJAP_22730	PWY-7822	AJAP_22730
AJAP_23110	PWY-6527	stachyose degradation
AJAP_23135	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_23135	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_23180	PWY-7511	protein ubiquitylation
AJAP_23320	PWY-6840	homoglutathione biosynthesis
AJAP_23320	PWY-7255	ergothioneine biosynthesis I (bacteria)
AJAP_23355	PWY-6840	homoglutathione biosynthesis
AJAP_23355	PWY-7255	ergothioneine biosynthesis I (bacteria)
AJAP_23440	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AJAP_23440	PWY-7820	AJAP_23440
AJAP_23585	PWY-5087	L-glutamate degradation VI (to pyruvate)
AJAP_23585	PWY-5103	L-isoleucine biosynthesis III
AJAP_23585	PWY-6728	methylaspartate cycle
AJAP_23790	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_23970	PWY-4381	fatty acid biosynthesis initiation I
AJAP_23970	PWY-5743	3-hydroxypropanoate cycle
AJAP_23970	PWY-5744	glyoxylate assimilation
AJAP_23970	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_23970	PWY-6679	jadomycin biosynthesis
AJAP_23970	PWY-6722	candicidin biosynthesis
AJAP_23970	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AJAP_23980	PWY-3781	aerobic respiration I (cytochrome c)
AJAP_23980	PWY-4521	arsenite oxidation I (respiratory)
AJAP_23980	PWY-6692	Fe(II) oxidation
AJAP_23980	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AJAP_24005	PWY-6012	acyl carrier protein metabolism I
AJAP_24005	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AJAP_24005	PWY-6289	petrobactin biosynthesis
AJAP_24010	PWY-723	alkylnitronates degradation
AJAP_24260	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AJAP_24260	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AJAP_24260	PWY-6896	thiamin salvage I
AJAP_24260	PWY-6897	thiamin salvage II
AJAP_24400	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AJAP_24400	PWY-5743	3-hydroxypropanoate cycle
AJAP_24400	PWY-5744	glyoxylate assimilation
AJAP_24400	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_24400	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_24400	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AJAP_24400	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AJAP_24485	PWY-4381	fatty acid biosynthesis initiation I
AJAP_24485	PWY-5743	3-hydroxypropanoate cycle
AJAP_24485	PWY-5744	glyoxylate assimilation
AJAP_24485	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_24485	PWY-6722	candicidin biosynthesis
AJAP_24495	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AJAP_24495	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AJAP_24495	PWY-6897	thiamin salvage II
AJAP_24495	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AJAP_24495	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AJAP_24495	PWY-7356	thiamin salvage IV (yeast)
AJAP_24495	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AJAP_24500	PWY-7285	methylwyosine biosynthesis
AJAP_24500	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AJAP_24525	PWY-5451	acetone degradation I (to methylglyoxal)
AJAP_24525	PWY-6588	pyruvate fermentation to acetone
AJAP_24525	PWY-6876	isopropanol biosynthesis
AJAP_24525	PWY-7466	acetone degradation III (to propane-1,2-diol)
AJAP_24530	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AJAP_24530	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AJAP_24530	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AJAP_24530	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AJAP_24530	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AJAP_24530	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AJAP_24530	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AJAP_24530	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AJAP_24535	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AJAP_24535	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AJAP_24535	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AJAP_24535	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AJAP_24535	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AJAP_24535	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AJAP_24535	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AJAP_24535	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AJAP_24540	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AJAP_24540	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AJAP_24540	PWY-6936	seleno-amino acid biosynthesis
AJAP_24540	PWY-702	L-methionine biosynthesis II
AJAP_24660	PWY-5278	sulfite oxidation III
AJAP_24660	PWY-5340	sulfate activation for sulfonation
AJAP_24660	PWY-6683	sulfate reduction III (assimilatory)
AJAP_24660	PWY-6932	selenate reduction
AJAP_24665	PWY-5278	sulfite oxidation III
AJAP_24665	PWY-5340	sulfate activation for sulfonation
AJAP_24665	PWY-6683	sulfate reduction III (assimilatory)
AJAP_24665	PWY-6932	selenate reduction
AJAP_24715	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AJAP_24810	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AJAP_24810	PWY-5723	Rubisco shunt
AJAP_24810	PWY-6891	thiazole biosynthesis II (Bacillus)
AJAP_24810	PWY-6892	thiazole biosynthesis I (E. coli)
AJAP_24810	PWY-6901	superpathway of glucose and xylose degradation
AJAP_24810	PWY-7560	methylerythritol phosphate pathway II
AJAP_24815	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AJAP_24815	PWY-5723	Rubisco shunt
AJAP_24820	PWY-3801	sucrose degradation II (sucrose synthase)
AJAP_24820	PWY-5054	sorbitol biosynthesis I
AJAP_24820	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AJAP_24820	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AJAP_24820	PWY-5659	GDP-mannose biosynthesis
AJAP_24820	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_24820	PWY-621	sucrose degradation III (sucrose invertase)
AJAP_24820	PWY-622	starch biosynthesis
AJAP_24820	PWY-6981	chitin biosynthesis
AJAP_24820	PWY-6992	1,5-anhydrofructose degradation
AJAP_24820	PWY-7238	sucrose biosynthesis II
AJAP_24820	PWY-7347	sucrose biosynthesis III
AJAP_24820	PWY-7385	1,3-propanediol biosynthesis (engineered)
AJAP_24825	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AJAP_24835	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AJAP_24835	PWY-6855	chitin degradation I (archaea)
AJAP_24835	PWY-6906	chitin derivatives degradation
AJAP_24855	PWY-1042	glycolysis IV (plant cytosol)
AJAP_24855	PWY-5484	glycolysis II (from fructose 6-phosphate)
AJAP_24855	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_24855	PWY-7003	glycerol degradation to butanol
AJAP_24860	PWY-1042	glycolysis IV (plant cytosol)
AJAP_24860	PWY-5484	glycolysis II (from fructose 6-phosphate)
AJAP_24860	PWY-6886	1-butanol autotrophic biosynthesis
AJAP_24860	PWY-6901	superpathway of glucose and xylose degradation
AJAP_24860	PWY-7003	glycerol degradation to butanol
AJAP_24865	PWY-1042	glycolysis IV (plant cytosol)
AJAP_24865	PWY-5484	glycolysis II (from fructose 6-phosphate)
AJAP_24865	PWY-6901	superpathway of glucose and xylose degradation
AJAP_24865	PWY-7003	glycerol degradation to butanol
AJAP_24930	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_24930	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_25015	PWY-6167	flavin biosynthesis II (archaea)
AJAP_25015	PWY-6168	flavin biosynthesis III (fungi)
AJAP_25020	PWY-6167	flavin biosynthesis II (archaea)
AJAP_25020	PWY-6168	flavin biosynthesis III (fungi)
AJAP_25020	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AJAP_25020	PWY-7991	AJAP_25020
AJAP_25025	PWY-6167	flavin biosynthesis II (archaea)
AJAP_25025	PWY-6168	flavin biosynthesis III (fungi)
AJAP_25025	PWY-7980	AJAP_25025
AJAP_25030	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AJAP_25030	PWY-5723	Rubisco shunt
AJAP_25065	PWY-4041	&gamma;-glutamyl cycle
AJAP_25065	PWY-4061	glutathione-mediated detoxification I
AJAP_25065	PWY-5826	hypoglycin biosynthesis
AJAP_25065	PWY-6842	glutathione-mediated detoxification II
AJAP_25065	PWY-7112	4-hydroxy-2-nonenal detoxification
AJAP_25065	PWY-7559	glutathione degradation (DUG pathway - yeast)
AJAP_25070	PWY-7942	AJAP_25070
AJAP_25080	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AJAP_25080	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AJAP_25085	PWY-7851	AJAP_25085
AJAP_25095	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AJAP_25105	PWY-5686	UMP biosynthesis
AJAP_25105	PWY-7790	AJAP_25105
AJAP_25105	PWY-7791	AJAP_25105
AJAP_25110	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AJAP_25110	PWY-5686	UMP biosynthesis
AJAP_25110	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AJAP_25110	PWY-7790	AJAP_25110
AJAP_25110	PWY-7791	AJAP_25110
AJAP_25115	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AJAP_25115	PWY-5686	UMP biosynthesis
AJAP_25115	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AJAP_25115	PWY-7790	AJAP_25115
AJAP_25115	PWY-7791	AJAP_25115
AJAP_25125	PWY-5686	UMP biosynthesis
AJAP_25125	PWY-7790	AJAP_25125
AJAP_25125	PWY-7791	AJAP_25125
AJAP_25130	PWY-5686	UMP biosynthesis
AJAP_25130	PWY-7790	AJAP_25130
AJAP_25130	PWY-7791	AJAP_25130
AJAP_25135	PWY-7183	pyrimidine nucleobases salvage I
AJAP_25155	PWY-7799	AJAP_25155
AJAP_25155	PWY-7800	AJAP_25155
AJAP_25175	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AJAP_25175	PWY-6416	quinate degradation II
AJAP_25175	PWY-6707	gallate biosynthesis
AJAP_25180	PWY-6164	3-dehydroquinate biosynthesis I
AJAP_25190	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AJAP_25195	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AJAP_25290	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AJAP_25290	PWY-6164	3-dehydroquinate biosynthesis I
AJAP_25290	PWY-6416	quinate degradation II
AJAP_25290	PWY-6707	gallate biosynthesis
AJAP_25330	PWY-7782	AJAP_25330
AJAP_25330	PWY-7783	AJAP_25330
AJAP_25340	PWY-6855	chitin degradation I (archaea)
AJAP_25340	PWY-6902	chitin degradation II
AJAP_25340	PWY-7822	AJAP_25340
AJAP_25350	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AJAP_25350	PWY-5389	3-methylthiopropanoate biosynthesis
AJAP_25355	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AJAP_25365	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AJAP_25365	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AJAP_25495	PWY-3341	L-proline biosynthesis III
AJAP_25495	PWY-4981	L-proline biosynthesis II (from arginine)
AJAP_25495	PWY-6344	L-ornithine degradation II (Stickland reaction)
AJAP_25495	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AJAP_25580	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AJAP_25580	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AJAP_25585	PWY-6853	ethylene biosynthesis II (microbes)
AJAP_25675	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AJAP_25680	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AJAP_25680	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AJAP_25680	PWY-7766	AJAP_25680
AJAP_25720	PWY-5169	cyanurate degradation
AJAP_25720	PWY-5703	urea degradation I
AJAP_25725	PWY-5169	cyanurate degradation
AJAP_25725	PWY-5703	urea degradation I
AJAP_25725	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_25745	PWY-1361	benzoyl-CoA degradation I (aerobic)
AJAP_25745	PWY-5109	2-methylbutanoate biosynthesis
AJAP_25745	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AJAP_25745	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AJAP_25745	PWY-5177	glutaryl-CoA degradation
AJAP_25745	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_25745	PWY-6435	4-hydroxybenzoate biosynthesis V
AJAP_25745	PWY-6583	pyruvate fermentation to butanol I
AJAP_25745	PWY-6863	pyruvate fermentation to hexanol
AJAP_25745	PWY-6883	pyruvate fermentation to butanol II
AJAP_25745	PWY-6944	androstenedione degradation
AJAP_25745	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AJAP_25745	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AJAP_25745	PWY-7007	methyl ketone biosynthesis
AJAP_25745	PWY-7046	4-coumarate degradation (anaerobic)
AJAP_25745	PWY-7094	fatty acid salvage
AJAP_25745	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AJAP_25745	PWY-735	jasmonic acid biosynthesis
AJAP_25745	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AJAP_25745	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AJAP_25745	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AJAP_25745	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AJAP_25745	PWY-7726	AJAP_25745
AJAP_25745	PWY-7778	AJAP_25745
AJAP_25745	PWY-7779	AJAP_25745
AJAP_25780	PWY-40	putrescine biosynthesis I
AJAP_25780	PWY-6305	putrescine biosynthesis IV
AJAP_25810	PWY-6891	thiazole biosynthesis II (Bacillus)
AJAP_25810	PWY-6892	thiazole biosynthesis I (E. coli)
AJAP_25810	PWY-7560	methylerythritol phosphate pathway II
AJAP_25825	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AJAP_25825	PWY-7494	choline degradation IV
AJAP_25920	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_25920	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_26050	PWY-6019	pseudouridine degradation
AJAP_26085	PWY-5392	reductive TCA cycle II
AJAP_26085	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AJAP_26085	PWY-5690	TCA cycle II (plants and fungi)
AJAP_26085	PWY-5913	TCA cycle VI (obligate autotrophs)
AJAP_26085	PWY-6728	methylaspartate cycle
AJAP_26085	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_26085	PWY-7254	TCA cycle VII (acetate-producers)
AJAP_26085	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AJAP_26140	PWY-723	alkylnitronates degradation
AJAP_26195	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_26195	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_26235	PWY-723	alkylnitronates degradation
AJAP_26245	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AJAP_26445	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AJAP_26445	PWY-6168	flavin biosynthesis III (fungi)
AJAP_26445	PWY-7863	AJAP_26445
AJAP_26670	PWY-1042	glycolysis IV (plant cytosol)
AJAP_26670	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AJAP_26670	PWY-5484	glycolysis II (from fructose 6-phosphate)
AJAP_26670	PWY-5723	Rubisco shunt
AJAP_26670	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_26670	PWY-6886	1-butanol autotrophic biosynthesis
AJAP_26670	PWY-6901	superpathway of glucose and xylose degradation
AJAP_26670	PWY-7003	glycerol degradation to butanol
AJAP_26670	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AJAP_26670	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AJAP_26680	PWY-6855	chitin degradation I (archaea)
AJAP_26680	PWY-6902	chitin degradation II
AJAP_26680	PWY-7822	AJAP_26680
AJAP_26710	PWY-1042	glycolysis IV (plant cytosol)
AJAP_26710	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AJAP_26710	PWY-5484	glycolysis II (from fructose 6-phosphate)
AJAP_26710	PWY-7385	1,3-propanediol biosynthesis (engineered)
AJAP_26715	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AJAP_26715	PWY-6164	3-dehydroquinate biosynthesis I
AJAP_26715	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AJAP_26740	PWY-6840	homoglutathione biosynthesis
AJAP_26740	PWY-7255	ergothioneine biosynthesis I (bacteria)
AJAP_26910	PWY-2582	brassinosteroid biosynthesis II
AJAP_26910	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AJAP_26910	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AJAP_26910	PWY-6948	sitosterol degradation to androstenedione
AJAP_26910	PWY-699	brassinosteroid biosynthesis I
AJAP_26910	PWY-7299	progesterone biosynthesis
AJAP_26915	PWY-5392	reductive TCA cycle II
AJAP_26915	PWY-5537	pyruvate fermentation to acetate V
AJAP_26915	PWY-5538	pyruvate fermentation to acetate VI
AJAP_26915	PWY-5690	TCA cycle II (plants and fungi)
AJAP_26915	PWY-5913	TCA cycle VI (obligate autotrophs)
AJAP_26915	PWY-6728	methylaspartate cycle
AJAP_26915	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_26915	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AJAP_26925	PWY-5350	thiosulfate disproportionation III (rhodanese)
AJAP_26925	PWY-7927	AJAP_26925
AJAP_26935	PWY-3821	galactose degradation III
AJAP_26935	PWY-6317	galactose degradation I (Leloir pathway)
AJAP_26935	PWY-6527	stachyose degradation
AJAP_26940	PWY-3821	galactose degradation III
AJAP_26940	PWY-6317	galactose degradation I (Leloir pathway)
AJAP_26940	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AJAP_26940	PWY-6527	stachyose degradation
AJAP_26940	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AJAP_26940	PWY-7344	UDP-D-galactose biosynthesis
AJAP_27025	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AJAP_27025	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AJAP_27025	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AJAP_27025	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AJAP_27025	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AJAP_27025	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AJAP_27025	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AJAP_27025	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AJAP_27065	PWY-2941	L-lysine biosynthesis II
AJAP_27065	PWY-5097	L-lysine biosynthesis VI
AJAP_27070	PWY-2781	<i>cis</i>-zeatin biosynthesis
AJAP_27150	PWY-3781	aerobic respiration I (cytochrome c)
AJAP_27150	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AJAP_27150	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AJAP_27150	PWY-5690	TCA cycle II (plants and fungi)
AJAP_27150	PWY-6728	methylaspartate cycle
AJAP_27150	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_27150	PWY-7254	TCA cycle VII (acetate-producers)
AJAP_27150	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AJAP_27170	PWY-5101	L-isoleucine biosynthesis II
AJAP_27170	PWY-5103	L-isoleucine biosynthesis III
AJAP_27170	PWY-5104	L-isoleucine biosynthesis IV
AJAP_27170	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AJAP_27175	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AJAP_27175	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AJAP_27175	PWY-7242	D-fructuronate degradation
AJAP_27175	PWY-7310	D-glucosaminate degradation
AJAP_27175	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
AJAP_27265	PWY-2201	folate transformations I
AJAP_27265	PWY-3841	folate transformations II
AJAP_27350	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AJAP_27350	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AJAP_27350	PWY-7953	AJAP_27350
AJAP_27355	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_27355	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_27355	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_27355	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_27360	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_27360	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_27360	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_27360	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_27365	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AJAP_27365	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AJAP_27370	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_27370	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_27370	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_27375	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AJAP_27375	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AJAP_27375	PWY-7953	AJAP_27375
AJAP_27495	PWY-5686	UMP biosynthesis
AJAP_27500	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_27535	PWY-5269	cardiolipin biosynthesis II
AJAP_27535	PWY-5668	cardiolipin biosynthesis I
AJAP_27535	PWY-7817	AJAP_27535
AJAP_27590	PWY-7731	AJAP_27590
AJAP_27640	PWY-2941	L-lysine biosynthesis II
AJAP_27640	PWY-2942	L-lysine biosynthesis III
AJAP_27640	PWY-5097	L-lysine biosynthesis VI
AJAP_27655	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AJAP_27705	PWY-2941	L-lysine biosynthesis II
AJAP_27705	PWY-2942	L-lysine biosynthesis III
AJAP_27705	PWY-5097	L-lysine biosynthesis VI
AJAP_27735	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AJAP_27735	PWY-6167	flavin biosynthesis II (archaea)
AJAP_27735	PWY-6168	flavin biosynthesis III (fungi)
AJAP_27735	PWY-7863	AJAP_27735
AJAP_27755	PWY-6454	vancomycin resistance I
AJAP_27755	PWY-6455	vancomycin resistance II
AJAP_27780	PWY-7805	AJAP_27780
AJAP_27780	PWY-7807	AJAP_27780
AJAP_28300	PWY-5451	acetone degradation I (to methylglyoxal)
AJAP_28300	PWY-6588	pyruvate fermentation to acetone
AJAP_28300	PWY-6876	isopropanol biosynthesis
AJAP_28300	PWY-7466	acetone degradation III (to propane-1,2-diol)
AJAP_28305	PWY-1361	benzoyl-CoA degradation I (aerobic)
AJAP_28305	PWY-5109	2-methylbutanoate biosynthesis
AJAP_28305	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AJAP_28305	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AJAP_28305	PWY-5177	glutaryl-CoA degradation
AJAP_28305	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_28305	PWY-6435	4-hydroxybenzoate biosynthesis V
AJAP_28305	PWY-6583	pyruvate fermentation to butanol I
AJAP_28305	PWY-6863	pyruvate fermentation to hexanol
AJAP_28305	PWY-6883	pyruvate fermentation to butanol II
AJAP_28305	PWY-6944	androstenedione degradation
AJAP_28305	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AJAP_28305	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AJAP_28305	PWY-7007	methyl ketone biosynthesis
AJAP_28305	PWY-7046	4-coumarate degradation (anaerobic)
AJAP_28305	PWY-7094	fatty acid salvage
AJAP_28305	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AJAP_28305	PWY-735	jasmonic acid biosynthesis
AJAP_28305	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AJAP_28305	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AJAP_28305	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AJAP_28305	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AJAP_28305	PWY-7726	AJAP_28305
AJAP_28305	PWY-7778	AJAP_28305
AJAP_28305	PWY-7779	AJAP_28305
AJAP_28620	PWY-381	nitrate reduction II (assimilatory)
AJAP_28620	PWY-5675	nitrate reduction V (assimilatory)
AJAP_28620	PWY-6549	L-glutamine biosynthesis III
AJAP_28620	PWY-6963	ammonia assimilation cycle I
AJAP_28620	PWY-6964	ammonia assimilation cycle II
AJAP_28740	PWY-4983	L-citrulline-nitric oxide cycle
AJAP_28740	PWY-4984	urea cycle
AJAP_28740	PWY-5	canavanine biosynthesis
AJAP_28740	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AJAP_28740	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AJAP_29115	PWY-6556	pyrimidine ribonucleosides salvage II
AJAP_29115	PWY-7181	pyrimidine deoxyribonucleosides degradation
AJAP_29115	PWY-7193	pyrimidine ribonucleosides salvage I
AJAP_29115	PWY-7199	pyrimidine deoxyribonucleosides salvage
AJAP_29165	PWY-5642	2,4-dinitrotoluene degradation
AJAP_29235	PWY-2582	brassinosteroid biosynthesis II
AJAP_29235	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AJAP_29235	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AJAP_29235	PWY-6948	sitosterol degradation to androstenedione
AJAP_29235	PWY-699	brassinosteroid biosynthesis I
AJAP_29235	PWY-7299	progesterone biosynthesis
AJAP_29260	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AJAP_29260	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AJAP_29260	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AJAP_29320	PWY-6683	sulfate reduction III (assimilatory)
AJAP_29335	PWY-5278	sulfite oxidation III
AJAP_29335	PWY-5340	sulfate activation for sulfonation
AJAP_29335	PWY-6683	sulfate reduction III (assimilatory)
AJAP_29335	PWY-6932	selenate reduction
AJAP_29340	PWY-5278	sulfite oxidation III
AJAP_29340	PWY-5340	sulfate activation for sulfonation
AJAP_29340	PWY-6683	sulfate reduction III (assimilatory)
AJAP_29340	PWY-6932	selenate reduction
AJAP_29345	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AJAP_29390	PWY-723	alkylnitronates degradation
AJAP_29395	PWY-6902	chitin degradation II
AJAP_29395	PWY-7822	AJAP_29395
AJAP_29395	PWY-7883	AJAP_29395
AJAP_29470	PWY-5381	pyridine nucleotide cycling (plants)
AJAP_29470	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AJAP_29470	PWY-7761	AJAP_29470
AJAP_29500	PWY-3341	L-proline biosynthesis III
AJAP_29500	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AJAP_29560	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AJAP_29560	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AJAP_29560	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AJAP_29560	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AJAP_29560	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AJAP_29560	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AJAP_29560	PWY-7205	CMP phosphorylation
AJAP_29560	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AJAP_29560	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AJAP_29560	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AJAP_29560	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AJAP_29560	PWY-7224	purine deoxyribonucleosides salvage
AJAP_29560	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AJAP_29560	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AJAP_29595	PWY-2161	folate polyglutamylation
AJAP_29980	PWY-5022	4-aminobutanoate degradation V
AJAP_29980	PWY-6728	methylaspartate cycle
AJAP_29980	PWY-7126	ethylene biosynthesis IV
AJAP_30145	PWY-6840	homoglutathione biosynthesis
AJAP_30145	PWY-7255	ergothioneine biosynthesis I (bacteria)
AJAP_30240	PWY-4381	fatty acid biosynthesis initiation I
AJAP_30240	PWY-5743	3-hydroxypropanoate cycle
AJAP_30240	PWY-5744	glyoxylate assimilation
AJAP_30240	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_30240	PWY-6722	candicidin biosynthesis
AJAP_30370	PWY-7376	cob(II)yrinate <i>a,c</i>-diamide biosynthesis II (late cobalt incorporation)
AJAP_30580	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AJAP_30580	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AJAP_30695	PWY-6167	flavin biosynthesis II (archaea)
AJAP_30825	PWY-5101	L-isoleucine biosynthesis II
AJAP_30825	PWY-5103	L-isoleucine biosynthesis III
AJAP_30825	PWY-5104	L-isoleucine biosynthesis IV
AJAP_30825	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AJAP_30880	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AJAP_30880	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AJAP_30965	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AJAP_31035	PWY-6269	adenosylcobalamin salvage from cobinamide II
AJAP_31035	PWY-7962	AJAP_31035
AJAP_31035	PWY-7971	AJAP_31035
AJAP_31035	PWY-7972	AJAP_31035
AJAP_31040	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AJAP_31040	PWY-6269	adenosylcobalamin salvage from cobinamide II
AJAP_31040	PWY-7964	AJAP_31040
AJAP_31040	PWY-7965	AJAP_31040
AJAP_31040	PWY-7966	AJAP_31040
AJAP_31040	PWY-7967	AJAP_31040
AJAP_31040	PWY-7968	AJAP_31040
AJAP_31040	PWY-7969	AJAP_31040
AJAP_31040	PWY-7970	AJAP_31040
AJAP_31045	PWY-5509	adenosylcobalamin biosynthesis from cobyrinate <i>a,c</i>-diamide I
AJAP_31045	PWY-6269	adenosylcobalamin salvage from cobinamide II
AJAP_31045	PWY-7961	AJAP_31045
AJAP_31045	PWY-7963	AJAP_31045
AJAP_31045	PWY-7964	AJAP_31045
AJAP_31045	PWY-7965	AJAP_31045
AJAP_31045	PWY-7966	AJAP_31045
AJAP_31045	PWY-7967	AJAP_31045
AJAP_31045	PWY-7968	AJAP_31045
AJAP_31045	PWY-7969	AJAP_31045
AJAP_31045	PWY-7970	AJAP_31045
AJAP_31045	PWY-7975	AJAP_31045
AJAP_31085	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AJAP_31090	PWY-5194	siroheme biosynthesis
AJAP_31090	PWY-5196	factor 430 biosynthesis
AJAP_31090	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AJAP_31125	PWY-5194	siroheme biosynthesis
AJAP_31125	PWY-5196	factor 430 biosynthesis
AJAP_31125	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AJAP_31135	PWY-6683	sulfate reduction III (assimilatory)
AJAP_31255	PWY-1341	phenylacetate degradation II (anaerobic)
AJAP_31255	PWY-6318	L-phenylalanine degradation IV (mammalian, via side chain)
AJAP_31255	PWY-7716	AJAP_31255
AJAP_31295	PWY-6855	chitin degradation I (archaea)
AJAP_31295	PWY-6902	chitin degradation II
AJAP_31295	PWY-7822	AJAP_31295
AJAP_31345	PWY-6614	tetrahydrofolate biosynthesis
AJAP_31495	PWY-6788	cellulose degradation II (fungi)
AJAP_31500	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_31500	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_31985	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AJAP_31985	PWY-6164	3-dehydroquinate biosynthesis I
AJAP_31985	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AJAP_32080	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_32080	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_32080	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_32080	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_32090	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_32090	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_32090	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_32090	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_32095	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_32095	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_32095	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_32095	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_32100	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_32100	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_32100	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_32100	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_32155	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AJAP_32165	PWY-6454	vancomycin resistance I
AJAP_32165	PWY-6455	vancomycin resistance II
AJAP_32170	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AJAP_32170	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AJAP_32170	PWY-7953	AJAP_32170
AJAP_32285	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_32285	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_32370	PWY-7782	AJAP_32370
AJAP_32370	PWY-7783	AJAP_32370
AJAP_32605	PWY-2301	<i>myo</i>-inositol biosynthesis
AJAP_32605	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
AJAP_32605	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
AJAP_32605	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
AJAP_32605	PWY-6664	di-myo-inositol phosphate biosynthesis
AJAP_32950	PWY-6167	flavin biosynthesis II (archaea)
AJAP_32955	PWY-6168	flavin biosynthesis III (fungi)
AJAP_32955	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AJAP_32955	PWY-7991	AJAP_32955
AJAP_32975	PWY-1361	benzoyl-CoA degradation I (aerobic)
AJAP_32975	PWY-5109	2-methylbutanoate biosynthesis
AJAP_32975	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AJAP_32975	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AJAP_32975	PWY-5177	glutaryl-CoA degradation
AJAP_32975	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_32975	PWY-6435	4-hydroxybenzoate biosynthesis V
AJAP_32975	PWY-6583	pyruvate fermentation to butanol I
AJAP_32975	PWY-6863	pyruvate fermentation to hexanol
AJAP_32975	PWY-6883	pyruvate fermentation to butanol II
AJAP_32975	PWY-6944	androstenedione degradation
AJAP_32975	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AJAP_32975	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AJAP_32975	PWY-7007	methyl ketone biosynthesis
AJAP_32975	PWY-7046	4-coumarate degradation (anaerobic)
AJAP_32975	PWY-7094	fatty acid salvage
AJAP_32975	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AJAP_32975	PWY-735	jasmonic acid biosynthesis
AJAP_32975	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AJAP_32975	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AJAP_32975	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AJAP_32975	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AJAP_32975	PWY-7726	AJAP_32975
AJAP_32975	PWY-7778	AJAP_32975
AJAP_32975	PWY-7779	AJAP_32975
AJAP_33240	PWY-5028	L-histidine degradation II
AJAP_33240	PWY-5030	L-histidine degradation III
AJAP_33255	PWY-5028	L-histidine degradation II
AJAP_33255	PWY-5030	L-histidine degradation III
AJAP_33260	PWY-5028	L-histidine degradation II
AJAP_33260	PWY-5030	L-histidine degradation III
AJAP_33450	PWY-381	nitrate reduction II (assimilatory)
AJAP_33450	PWY-5675	nitrate reduction V (assimilatory)
AJAP_33450	PWY-6549	L-glutamine biosynthesis III
AJAP_33450	PWY-6963	ammonia assimilation cycle I
AJAP_33450	PWY-6964	ammonia assimilation cycle II
AJAP_33500	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_33505	PWY-381	nitrate reduction II (assimilatory)
AJAP_33505	PWY-5675	nitrate reduction V (assimilatory)
AJAP_33505	PWY-6549	L-glutamine biosynthesis III
AJAP_33505	PWY-6963	ammonia assimilation cycle I
AJAP_33505	PWY-6964	ammonia assimilation cycle II
AJAP_33535	PWY-5381	pyridine nucleotide cycling (plants)
AJAP_33535	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AJAP_33535	PWY-7761	AJAP_33535
AJAP_33560	PWY-6654	phosphopantothenate biosynthesis III
AJAP_33750	PWY-6059	dimethyl sulfide degradation II (oxidation)
AJAP_33775	PWY-3461	L-tyrosine biosynthesis II
AJAP_33775	PWY-3462	L-phenylalanine biosynthesis II
AJAP_33775	PWY-6120	L-tyrosine biosynthesis III
AJAP_33775	PWY-6627	salinosporamide A biosynthesis
AJAP_33775	PWY-7626	bacilysin biosynthesis
AJAP_33810	PWY-5530	sorbitol biosynthesis II
AJAP_33810	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AJAP_33860	PWY-5381	pyridine nucleotide cycling (plants)
AJAP_33860	PWY-7761	AJAP_33860
AJAP_33985	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AJAP_33985	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AJAP_34010	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AJAP_34010	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AJAP_34020	PWY-6683	sulfate reduction III (assimilatory)
AJAP_34445	PWY-6788	cellulose degradation II (fungi)
AJAP_34465	PWY-6855	chitin degradation I (archaea)
AJAP_34465	PWY-6902	chitin degradation II
AJAP_34465	PWY-7822	AJAP_34465
AJAP_34530	PWY-5198	factor 420 biosynthesis
AJAP_34535	PWY-5199	factor 420 polyglutamylation
AJAP_34620	PWY-3221	dTDP-L-rhamnose biosynthesis II
AJAP_34620	PWY-6808	dTDP-D-forosamine biosynthesis
AJAP_34620	PWY-6942	dTDP-D-desosamine biosynthesis
AJAP_34620	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AJAP_34620	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AJAP_34620	PWY-6974	dTDP-L-olivose biosynthesis
AJAP_34620	PWY-6976	dTDP-L-mycarose biosynthesis
AJAP_34620	PWY-7104	dTDP-L-megosamine biosynthesis
AJAP_34620	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AJAP_34620	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AJAP_34620	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AJAP_34620	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AJAP_34620	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AJAP_34620	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AJAP_34620	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AJAP_34620	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AJAP_34620	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AJAP_34620	PWY-7688	AJAP_34620
AJAP_34620	PWY-7814	AJAP_34620
AJAP_34665	PWY-6123	inosine-5'-phosphate biosynthesis I
AJAP_34665	PWY-7234	inosine-5'-phosphate biosynthesis III
AJAP_34770	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AJAP_34770	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AJAP_34865	PWY-4381	fatty acid biosynthesis initiation I
AJAP_34865	PWY-5743	3-hydroxypropanoate cycle
AJAP_34865	PWY-5744	glyoxylate assimilation
AJAP_34865	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_34865	PWY-6722	candicidin biosynthesis
AJAP_34950	PWY-4261	glycerol degradation I
AJAP_34950	PWY-6118	glycerol-3-phosphate shuttle
AJAP_34950	PWY-6952	glycerophosphodiester degradation
AJAP_34960	PWY-4261	glycerol degradation I
AJAP_35045	PWY-4202	arsenate detoxification I (glutaredoxin)
AJAP_35045	PWY-5532	adenosine nucleotides degradation IV
AJAP_35045	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AJAP_35045	PWY-6608	guanosine nucleotides degradation III
AJAP_35045	PWY-6609	adenine and adenosine salvage III
AJAP_35045	PWY-6611	adenine and adenosine salvage V
AJAP_35045	PWY-6620	guanine and guanosine salvage
AJAP_35045	PWY-6627	salinosporamide A biosynthesis
AJAP_35045	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
AJAP_35045	PWY-7179	purine deoxyribonucleosides degradation I
AJAP_35045	PWY-7179-1	purine deoxyribonucleosides degradation
AJAP_35055	PWY-6749	CMP-legionaminate biosynthesis I
AJAP_35125	PWY-7183	pyrimidine nucleobases salvage I
AJAP_35145	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AJAP_35235	PWY-6609	adenine and adenosine salvage III
AJAP_35235	PWY-6611	adenine and adenosine salvage V
AJAP_35235	PWY-7179	purine deoxyribonucleosides degradation I
AJAP_35235	PWY-7179-1	purine deoxyribonucleosides degradation
AJAP_35245	PWY-7181	pyrimidine deoxyribonucleosides degradation
AJAP_35250	PWY-6556	pyrimidine ribonucleosides salvage II
AJAP_35250	PWY-7181	pyrimidine deoxyribonucleosides degradation
AJAP_35250	PWY-7193	pyrimidine ribonucleosides salvage I
AJAP_35250	PWY-7199	pyrimidine deoxyribonucleosides salvage
AJAP_35285	PWY-3781	aerobic respiration I (cytochrome c)
AJAP_35285	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AJAP_35285	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AJAP_35285	PWY-5690	TCA cycle II (plants and fungi)
AJAP_35285	PWY-6728	methylaspartate cycle
AJAP_35285	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_35285	PWY-7254	TCA cycle VII (acetate-producers)
AJAP_35285	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AJAP_35290	PWY-3781	aerobic respiration I (cytochrome c)
AJAP_35290	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AJAP_35290	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AJAP_35290	PWY-5690	TCA cycle II (plants and fungi)
AJAP_35290	PWY-6728	methylaspartate cycle
AJAP_35290	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_35290	PWY-7254	TCA cycle VII (acetate-producers)
AJAP_35290	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AJAP_35345	PWY-6855	chitin degradation I (archaea)
AJAP_35345	PWY-6902	chitin degradation II
AJAP_35345	PWY-7822	AJAP_35345
AJAP_35390	PWY-5913	TCA cycle VI (obligate autotrophs)
AJAP_35390	PWY-6549	L-glutamine biosynthesis III
AJAP_35390	PWY-6728	methylaspartate cycle
AJAP_35390	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_35390	PWY-7124	ethylene biosynthesis V (engineered)
AJAP_35390	PWY-7254	TCA cycle VII (acetate-producers)
AJAP_35390	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AJAP_35410	PWY-6857	retinol biosynthesis
AJAP_35470	PWY-6164	3-dehydroquinate biosynthesis I
AJAP_35475	PWY-3461	L-tyrosine biosynthesis II
AJAP_35475	PWY-3462	L-phenylalanine biosynthesis II
AJAP_35475	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AJAP_35475	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AJAP_35475	PWY-5958	acridone alkaloid biosynthesis
AJAP_35475	PWY-6120	L-tyrosine biosynthesis III
AJAP_35475	PWY-6406	salicylate biosynthesis I
AJAP_35475	PWY-6627	salinosporamide A biosynthesis
AJAP_35475	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AJAP_35475	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AJAP_35475	PWY-7626	bacilysin biosynthesis
AJAP_35480	PWY-4381	fatty acid biosynthesis initiation I
AJAP_35530	PWY-6164	3-dehydroquinate biosynthesis I
AJAP_35650	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_35650	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_35670	PWY-6123	inosine-5'-phosphate biosynthesis I
AJAP_35670	PWY-6124	inosine-5'-phosphate biosynthesis II
AJAP_35670	PWY-7234	inosine-5'-phosphate biosynthesis III
AJAP_35675	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AJAP_35675	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AJAP_35690	PWY-5392	reductive TCA cycle II
AJAP_35690	PWY-5537	pyruvate fermentation to acetate V
AJAP_35690	PWY-5538	pyruvate fermentation to acetate VI
AJAP_35690	PWY-5690	TCA cycle II (plants and fungi)
AJAP_35690	PWY-5913	TCA cycle VI (obligate autotrophs)
AJAP_35690	PWY-6728	methylaspartate cycle
AJAP_35690	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_35690	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AJAP_35695	PWY-5392	reductive TCA cycle II
AJAP_35695	PWY-5537	pyruvate fermentation to acetate V
AJAP_35695	PWY-5538	pyruvate fermentation to acetate VI
AJAP_35695	PWY-5690	TCA cycle II (plants and fungi)
AJAP_35695	PWY-5913	TCA cycle VI (obligate autotrophs)
AJAP_35695	PWY-6728	methylaspartate cycle
AJAP_35695	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_35695	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AJAP_35725	PWY-3461	L-tyrosine biosynthesis II
AJAP_35725	PWY-3462	L-phenylalanine biosynthesis II
AJAP_35725	PWY-6120	L-tyrosine biosynthesis III
AJAP_35725	PWY-6627	salinosporamide A biosynthesis
AJAP_35725	PWY-7626	bacilysin biosynthesis
AJAP_35800	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AJAP_35870	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AJAP_35870	PWY-6596	adenosine nucleotides degradation I
AJAP_35870	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AJAP_35975	PWY-4381	fatty acid biosynthesis initiation I
AJAP_35975	PWY-5743	3-hydroxypropanoate cycle
AJAP_35975	PWY-5744	glyoxylate assimilation
AJAP_35975	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_35975	PWY-6722	candicidin biosynthesis
AJAP_35990	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AJAP_36000	PWY-4261	glycerol degradation I
AJAP_36010	PWY-6938	NADH repair
AJAP_36015	PWY-6749	CMP-legionaminate biosynthesis I
AJAP_36020	PWY-5098	chlorophyll <i>a</i> degradation I
AJAP_36020	PWY-6927	chlorophyll <i>a</i> degradation II
AJAP_36020	PWY-7164	chlorophyll <i>a</i> degradation III
AJAP_36070	PWY-6749	CMP-legionaminate biosynthesis I
AJAP_36205	PWY-7799	AJAP_36205
AJAP_36205	PWY-7800	AJAP_36205
AJAP_36210	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AJAP_36665	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_36665	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_36665	PWY-7812	AJAP_36665
AJAP_36715	PWY-3221	dTDP-L-rhamnose biosynthesis II
AJAP_36715	PWY-6808	dTDP-D-forosamine biosynthesis
AJAP_36715	PWY-6942	dTDP-D-desosamine biosynthesis
AJAP_36715	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AJAP_36715	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AJAP_36715	PWY-6974	dTDP-L-olivose biosynthesis
AJAP_36715	PWY-6976	dTDP-L-mycarose biosynthesis
AJAP_36715	PWY-7104	dTDP-L-megosamine biosynthesis
AJAP_36715	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AJAP_36715	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AJAP_36715	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AJAP_36715	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AJAP_36715	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AJAP_36715	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AJAP_36715	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AJAP_36715	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AJAP_36715	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AJAP_36715	PWY-7688	AJAP_36715
AJAP_36715	PWY-7814	AJAP_36715
AJAP_36740	PWY-7019	butirosin biosynthesis
AJAP_36840	PWY-7651	heparan sulfate degradation
AJAP_36870	PWY-6073	alginate biosynthesis I (algal)
AJAP_36870	PWY-6082	alginate biosynthesis II (bacterial)
AJAP_36905	PWY-5392	reductive TCA cycle II
AJAP_36905	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AJAP_37060	PWY-5839	menaquinol-7 biosynthesis
AJAP_37060	PWY-5844	menaquinol-9 biosynthesis
AJAP_37060	PWY-5849	menaquinol-6 biosynthesis
AJAP_37060	PWY-5890	menaquinol-10 biosynthesis
AJAP_37060	PWY-5891	menaquinol-11 biosynthesis
AJAP_37060	PWY-5892	menaquinol-12 biosynthesis
AJAP_37060	PWY-5895	menaquinol-13 biosynthesis
AJAP_37095	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AJAP_37100	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AJAP_37120	PWY-5839	menaquinol-7 biosynthesis
AJAP_37120	PWY-5851	demethylmenaquinol-9 biosynthesis
AJAP_37120	PWY-5852	demethylmenaquinol-8 biosynthesis I
AJAP_37120	PWY-5853	demethylmenaquinol-6 biosynthesis I
AJAP_37120	PWY-5890	menaquinol-10 biosynthesis
AJAP_37120	PWY-5891	menaquinol-11 biosynthesis
AJAP_37120	PWY-5892	menaquinol-12 biosynthesis
AJAP_37120	PWY-5895	menaquinol-13 biosynthesis
AJAP_37180	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AJAP_37205	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AJAP_37205	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AJAP_37215	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AJAP_37215	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AJAP_37215	PWY-5194	siroheme biosynthesis
AJAP_37215	PWY-5196	factor 430 biosynthesis
AJAP_37215	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AJAP_37220	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AJAP_37220	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AJAP_37225	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AJAP_37285	PWY-3341	L-proline biosynthesis III
AJAP_37285	PWY-4981	L-proline biosynthesis II (from arginine)
AJAP_37285	PWY-6344	L-ornithine degradation II (Stickland reaction)
AJAP_37330	PWY-1622	formaldehyde assimilation I (serine pathway)
AJAP_37330	PWY-5484	glycolysis II (from fructose 6-phosphate)
AJAP_37360	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AJAP_37360	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AJAP_37360	PWY-7953	AJAP_37360
AJAP_37380	PWY-2201	folate transformations I
AJAP_37380	PWY-5497	purine nucleobases degradation II (anaerobic)
AJAP_37380	PWY-7909	AJAP_37380
AJAP_37385	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_37385	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_37520	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AJAP_37830	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_37830	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_38150	PWY-3781	aerobic respiration I (cytochrome c)
AJAP_38150	PWY-4521	arsenite oxidation I (respiratory)
AJAP_38150	PWY-6692	Fe(II) oxidation
AJAP_38150	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AJAP_38885	PWY-7560	methylerythritol phosphate pathway II
AJAP_38890	PWY-7560	methylerythritol phosphate pathway II
AJAP_38895	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_38895	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_38900	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_38900	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_38980	PWY-4261	glycerol degradation I
AJAP_39020	PWY-4261	glycerol degradation I
AJAP_39070	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AJAP_39070	PWY-5743	3-hydroxypropanoate cycle
AJAP_39070	PWY-5744	glyoxylate assimilation
AJAP_39070	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_39070	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_39070	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AJAP_39070	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AJAP_39180	PWY-7942	AJAP_39180
AJAP_39240	PWY-3961	phosphopantothenate biosynthesis II
AJAP_39245	PWY-5155	&beta;-alanine biosynthesis III
AJAP_39280	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AJAP_39280	PWY-6148	tetrahydromethanopterin biosynthesis
AJAP_39280	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AJAP_39280	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AJAP_39280	PWY-7852	AJAP_39280
AJAP_39280	PWY-7853	AJAP_39280
AJAP_39285	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AJAP_39285	PWY-6148	tetrahydromethanopterin biosynthesis
AJAP_39285	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AJAP_39285	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AJAP_39290	PWY-6614	tetrahydrofolate biosynthesis
AJAP_39295	PWY-5663	tetrahydrobiopterin biosynthesis I
AJAP_39295	PWY-5664	tetrahydrobiopterin biosynthesis II
AJAP_39295	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AJAP_39295	PWY-6703	preQ<sub>0</sub> biosynthesis
AJAP_39295	PWY-6983	tetrahydrobiopterin biosynthesis III
AJAP_39295	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AJAP_39295	PWY-7852	AJAP_39295
AJAP_39325	PWY-6599	guanine and guanosine salvage II
AJAP_39325	PWY-6609	adenine and adenosine salvage III
AJAP_39325	PWY-6610	adenine and adenosine salvage IV
AJAP_39325	PWY-6620	guanine and guanosine salvage
AJAP_39340	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_39340	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_39345	PWY-7805	AJAP_39345
AJAP_39345	PWY-7807	AJAP_39345
AJAP_39350	PWY-1622	formaldehyde assimilation I (serine pathway)
AJAP_39350	PWY-181	photorespiration
AJAP_39350	PWY-2161	folate polyglutamylation
AJAP_39350	PWY-2201	folate transformations I
AJAP_39350	PWY-3661	glycine betaine degradation I
AJAP_39350	PWY-3661-1	glycine betaine degradation II (mammalian)
AJAP_39350	PWY-3841	folate transformations II
AJAP_39350	PWY-5497	purine nucleobases degradation II (anaerobic)
AJAP_39435	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AJAP_39435	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AJAP_39435	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AJAP_39435	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AJAP_39435	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AJAP_39435	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AJAP_39505	PWY-7805	AJAP_39505
AJAP_39505	PWY-7807	AJAP_39505
AJAP_39605	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AJAP_39645	PWY-5108	L-isoleucine biosynthesis V
AJAP_39645	PWY-5132	humulone biosynthesis
AJAP_39645	PWY-5133	cohumulone biosynthesis
AJAP_39645	PWY-6672	<i>cis</i>-genanyl-CoA degradation
AJAP_39645	PWY-7118	chitin degradation to ethanol
AJAP_39645	PWY-7857	AJAP_39645
AJAP_39785	PWY-6857	retinol biosynthesis
AJAP_39810	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_39810	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_39810	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_39810	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_39845	PWY-4321	L-glutamate degradation IV
AJAP_39905	PWY-2941	L-lysine biosynthesis II
AJAP_39905	PWY-2942	L-lysine biosynthesis III
AJAP_39905	PWY-5097	L-lysine biosynthesis VI
AJAP_39905	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AJAP_39905	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AJAP_39905	PWY-6559	spermidine biosynthesis II
AJAP_39905	PWY-6562	norspermidine biosynthesis
AJAP_39905	PWY-7153	grixazone biosynthesis
AJAP_39905	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AJAP_39905	PWY-7977	AJAP_39905
AJAP_39910	PWY-2941	L-lysine biosynthesis II
AJAP_39910	PWY-2942	L-lysine biosynthesis III
AJAP_39910	PWY-5097	L-lysine biosynthesis VI
AJAP_39910	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AJAP_39910	PWY-6559	spermidine biosynthesis II
AJAP_39910	PWY-6562	norspermidine biosynthesis
AJAP_39910	PWY-7153	grixazone biosynthesis
AJAP_39910	PWY-7977	AJAP_39910
AJAP_39960	PWY-6871	3-methylbutanol biosynthesis
AJAP_40160	PWY-1361	benzoyl-CoA degradation I (aerobic)
AJAP_40160	PWY-5109	2-methylbutanoate biosynthesis
AJAP_40160	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AJAP_40160	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AJAP_40160	PWY-5177	glutaryl-CoA degradation
AJAP_40160	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_40160	PWY-6435	4-hydroxybenzoate biosynthesis V
AJAP_40160	PWY-6583	pyruvate fermentation to butanol I
AJAP_40160	PWY-6863	pyruvate fermentation to hexanol
AJAP_40160	PWY-6883	pyruvate fermentation to butanol II
AJAP_40160	PWY-6944	androstenedione degradation
AJAP_40160	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AJAP_40160	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AJAP_40160	PWY-7007	methyl ketone biosynthesis
AJAP_40160	PWY-7046	4-coumarate degradation (anaerobic)
AJAP_40160	PWY-7094	fatty acid salvage
AJAP_40160	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AJAP_40160	PWY-735	jasmonic acid biosynthesis
AJAP_40160	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AJAP_40160	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AJAP_40160	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AJAP_40160	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AJAP_40160	PWY-7726	AJAP_40160
AJAP_40160	PWY-7778	AJAP_40160
AJAP_40160	PWY-7779	AJAP_40160
AJAP_40325	PWY-2941	L-lysine biosynthesis II
AJAP_40325	PWY-2942	L-lysine biosynthesis III
AJAP_40325	PWY-5097	L-lysine biosynthesis VI
AJAP_40360	PWY-6854	ethylene biosynthesis III (microbes)
AJAP_40365	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_40365	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_40405	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
AJAP_40405	PWY-6174	mevalonate pathway II (archaea)
AJAP_40405	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
AJAP_40405	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
AJAP_40405	PWY-7102	bisabolene biosynthesis
AJAP_40405	PWY-7391	isoprene biosynthesis II (engineered)
AJAP_40405	PWY-7524	mevalonate pathway III (archaea)
AJAP_40405	PWY-7560	methylerythritol phosphate pathway II
AJAP_40405	PWY-922	mevalonate pathway I
AJAP_40470	PWY-5350	thiosulfate disproportionation III (rhodanese)
AJAP_40470	PWY-7927	AJAP_40470
AJAP_40490	PWY-4041	&gamma;-glutamyl cycle
AJAP_40490	PWY-7942	AJAP_40490
AJAP_40540	PWY-1361	benzoyl-CoA degradation I (aerobic)
AJAP_40540	PWY-5109	2-methylbutanoate biosynthesis
AJAP_40540	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AJAP_40540	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AJAP_40540	PWY-5177	glutaryl-CoA degradation
AJAP_40540	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AJAP_40540	PWY-6435	4-hydroxybenzoate biosynthesis V
AJAP_40540	PWY-6583	pyruvate fermentation to butanol I
AJAP_40540	PWY-6863	pyruvate fermentation to hexanol
AJAP_40540	PWY-6883	pyruvate fermentation to butanol II
AJAP_40540	PWY-6944	androstenedione degradation
AJAP_40540	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AJAP_40540	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AJAP_40540	PWY-7007	methyl ketone biosynthesis
AJAP_40540	PWY-7046	4-coumarate degradation (anaerobic)
AJAP_40540	PWY-7094	fatty acid salvage
AJAP_40540	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AJAP_40540	PWY-735	jasmonic acid biosynthesis
AJAP_40540	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AJAP_40540	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AJAP_40540	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AJAP_40540	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AJAP_40540	PWY-7726	AJAP_40540
AJAP_40540	PWY-7778	AJAP_40540
AJAP_40540	PWY-7779	AJAP_40540
AJAP_40565	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AJAP_40565	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AJAP_40565	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AJAP_40570	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AJAP_40570	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AJAP_40570	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AJAP_40570	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_40630	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AJAP_40630	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AJAP_40630	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AJAP_40645	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AJAP_40645	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AJAP_40645	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AJAP_40650	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AJAP_40650	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AJAP_40650	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AJAP_40660	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AJAP_40660	PWY-7494	choline degradation IV
AJAP_40700	PWY-6123	inosine-5'-phosphate biosynthesis I
AJAP_40700	PWY-6124	inosine-5'-phosphate biosynthesis II
AJAP_40700	PWY-7234	inosine-5'-phosphate biosynthesis III
AJAP_40710	PWY-5963	thio-molybdenum cofactor biosynthesis
AJAP_40740	PWY-6123	inosine-5'-phosphate biosynthesis I
AJAP_40740	PWY-6124	inosine-5'-phosphate biosynthesis II
AJAP_40740	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AJAP_40740	PWY-7234	inosine-5'-phosphate biosynthesis III
AJAP_40825	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AJAP_40825	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AJAP_40825	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AJAP_40855	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AJAP_40895	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_40895	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_40895	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_40895	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_40945	PWY-1042	glycolysis IV (plant cytosol)
AJAP_40945	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AJAP_40945	PWY-5484	glycolysis II (from fructose 6-phosphate)
AJAP_40945	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AJAP_40945	PWY-7385	1,3-propanediol biosynthesis (engineered)
AJAP_40965	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_40965	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_40995	PWY-6906	chitin derivatives degradation
AJAP_40995	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
AJAP_40995	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
AJAP_41025	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_41025	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_41115	PWY-5686	UMP biosynthesis
AJAP_41115	PWY-7790	AJAP_41115
AJAP_41115	PWY-7791	AJAP_41115
AJAP_41340	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
AJAP_41340	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AJAP_41695	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AJAP_41860	PWY-2301	<i>myo</i>-inositol biosynthesis
AJAP_41860	PWY-4661	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis III (<i>Spirodela polyrrhiza</i>)
AJAP_41860	PWY-6372	1D-<i>myo</i>-inositol hexakisphosphate biosynthesis IV (<i>Dictyostelium</i>)
AJAP_41860	PWY-6580	phosphatidylinositol biosynthesis I (bacteria)
AJAP_41860	PWY-6664	di-myo-inositol phosphate biosynthesis
AJAP_41875	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_41875	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_41875	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_41875	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_41880	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AJAP_41880	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AJAP_41880	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AJAP_41880	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AJAP_42275	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AJAP_42275	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AJAP_42275	PWY-7953	AJAP_42275
AJAP_42940	PWY-6700	queuosine biosynthesis
