locus-tag class description RAM_00005 PF08299 Bacterial dnaA protein helix-turn-helix RAM_00005 PF00308 Bacterial dnaA protein RAM_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain RAM_00010 PF02767 DNA polymerase III beta subunit, central domain RAM_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain RAM_00015 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RAM_00015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_00020 PF02463 RecF/RecN/SMC N terminal domain RAM_00025 PF05258 Dna[CI] antecedent, DciA RAM_00030 PF01751 Toprim domain RAM_00030 PF00986 DNA gyrase B subunit, carboxyl terminus RAM_00030 PF00204 DNA gyrase B RAM_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller RAM_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A RAM_00040 PF12089 Transmembrane domain of unknown function (DUF3566) RAM_00050 PF00589 Phage integrase family RAM_00125 PF00005 ABC transporter RAM_00125 PF13732 Domain of unknown function (DUF4162) RAM_00130 PF01061 ABC-2 type transporter RAM_00135 PF00196 Bacterial regulatory proteins, luxR family RAM_00140 PF00067 Cytochrome P450 RAM_00145 PF00561 alpha/beta hydrolase fold RAM_00150 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_00150 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RAM_00175 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_00180 PF01694 Rhomboid family RAM_00190 PF06781 Cell division protein CrgA RAM_00195 PF04203 Sortase domain RAM_00215 PF00005 ABC transporter RAM_00225 PF00072 Response regulator receiver domain RAM_00225 PF00196 Bacterial regulatory proteins, luxR family RAM_00230 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_00235 PF00117 Glutamine amidotransferase class-I RAM_00240 PF00005 ABC transporter RAM_00255 PF00069 Protein kinase domain RAM_00255 PF03793 PASTA domain RAM_00260 PF00069 Protein kinase domain RAM_00265 PF00905 Penicillin binding protein transpeptidase domain RAM_00270 PF01098 Cell cycle protein RAM_00280 PF16697 Inner membrane component of T3SS, cytoplasmic domain RAM_00285 PF00498 FHA domain RAM_00285 PF12401 Protein of unknown function (DUF2662) RAM_00300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RAM_00310 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_00330 PF00392 Bacterial regulatory proteins, gntR family RAM_00330 PF07729 FCD domain RAM_00335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_00340 PF00528 Binding-protein-dependent transport system inner membrane component RAM_00350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_00350 PF00005 ABC transporter RAM_00355 PF00005 ABC transporter RAM_00355 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_00360 PF00171 Aldehyde dehydrogenase family RAM_00370 PF01425 Amidase RAM_00390 PF03328 HpcH/HpaI aldolase/citrate lyase family RAM_00395 PF03328 HpcH/HpaI aldolase/citrate lyase family RAM_00405 PF13460 NAD(P)H-binding RAM_00410 PF14572 Phosphoribosyl synthetase-associated domain RAM_00410 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RAM_00415 PF01565 FAD binding domain RAM_00415 PF04030 D-arabinono-1,4-lactone oxidase RAM_00425 PF13977 BetI-type transcriptional repressor, C-terminal RAM_00425 PF00440 Bacterial regulatory proteins, tetR family RAM_00430 PF00232 Glycosyl hydrolase family 1 RAM_00470 PF04234 CopC domain RAM_00470 PF05425 Copper resistance protein D RAM_00470 PF13115 YtkA-like RAM_00485 PF00528 Binding-protein-dependent transport system inner membrane component RAM_00490 PF00005 ABC transporter RAM_00490 PF00571 CBS domain RAM_00495 PF00528 Binding-protein-dependent transport system inner membrane component RAM_00500 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RAM_00520 PF01209 ubiE/COQ5 methyltransferase family RAM_00525 PF00106 short chain dehydrogenase RAM_00530 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RAM_00530 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RAM_00530 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RAM_00545 PF01609 Transposase DDE domain RAM_00545 PF13808 DDE_Tnp_1-associated RAM_00560 PF07690 Major Facilitator Superfamily RAM_00570 PF07730 Histidine kinase RAM_00575 PF00196 Bacterial regulatory proteins, luxR family RAM_00575 PF00072 Response regulator receiver domain RAM_00585 PF16363 GDP-mannose 4,6 dehydratase RAM_00610 PF00534 Glycosyl transferases group 1 RAM_00660 PF06827 Zinc finger found in FPG and IleRS RAM_00660 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_00665 PF07694 5TMR of 5TMR-LYT RAM_00665 PF06580 Histidine kinase RAM_00670 PF01343 Peptidase family S49 RAM_00670 PF06965 Na+/H+ antiporter 1 RAM_00680 PF00072 Response regulator receiver domain RAM_00680 PF04397 LytTr DNA-binding domain RAM_00690 PF00474 Sodium:solute symporter family RAM_00695 PF01206 Sulfurtransferase TusA RAM_00695 PF00581 Rhodanese-like domain RAM_00715 PF07690 Major Facilitator Superfamily RAM_00720 PF02585 GlcNAc-PI de-N-acetylase RAM_00725 PF00067 Cytochrome P450 RAM_00740 PF04542 Sigma-70 region 2 RAM_00740 PF04539 Sigma-70 region 3 RAM_00740 PF04545 Sigma-70, region 4 RAM_00750 PF00210 Ferritin-like domain RAM_00825 PF01654 Cytochrome bd terminal oxidase subunit I RAM_00830 PF02322 Cytochrome bd terminal oxidase subunit II RAM_00835 PF00664 ABC transporter transmembrane region RAM_00835 PF00005 ABC transporter RAM_00840 PF07730 Histidine kinase RAM_00840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_00840 PF13492 GAF domain RAM_00840 PF13185 GAF domain RAM_00845 PF00196 Bacterial regulatory proteins, luxR family RAM_00845 PF00072 Response regulator receiver domain RAM_00890 PF04434 SWIM zinc finger RAM_00910 PF00485 Phosphoribulokinase / Uridine kinase family RAM_00915 PF01661 Macro domain RAM_00920 PF01842 ACT domain RAM_00920 PF00800 Prephenate dehydratase RAM_00925 PF00300 Histidine phosphatase superfamily (branch 1) RAM_00960 PF03738 Glutathionylspermidine synthase preATP-grasp RAM_00970 PF00561 alpha/beta hydrolase fold RAM_00975 PF00202 Aminotransferase class-III RAM_00980 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_00980 PF02403 Seryl-tRNA synthetase N-terminal domain RAM_00990 PF01266 FAD dependent oxidoreductase RAM_01010 PF00196 Bacterial regulatory proteins, luxR family RAM_01015 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_01020 PF01370 NAD dependent epimerase/dehydratase family RAM_01030 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_01030 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RAM_01035 PF04542 Sigma-70 region 2 RAM_01035 PF04545 Sigma-70, region 4 RAM_01045 PF04389 Peptidase family M28 RAM_01045 PF04151 Bacterial pre-peptidase C-terminal domain RAM_01055 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_01060 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RAM_01060 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_01075 PF00501 AMP-binding enzyme RAM_01075 PF13193 AMP-binding enzyme C-terminal domain RAM_01115 PF01553 Acyltransferase RAM_01125 PF00296 Luciferase-like monooxygenase RAM_01135 PF03275 UDP-galactopyranose mutase RAM_01140 PF01569 PAP2 superfamily RAM_01145 PF01040 UbiA prenyltransferase family RAM_01160 PF00106 short chain dehydrogenase RAM_01165 PF01565 FAD binding domain RAM_01165 PF04030 D-arabinono-1,4-lactone oxidase RAM_01170 PF04138 GtrA-like protein RAM_01175 PF17994 Galactofuranosyltransferase 2 N-terminal RAM_01210 PF00005 ABC transporter RAM_01215 PF01061 ABC-2 type transporter RAM_01220 PF10759 Protein of unknown function (DUF2587) RAM_01225 PF00266 Aminotransferase class-V RAM_01230 PF08240 Alcohol dehydrogenase GroES-like domain RAM_01230 PF00698 Acyl transferase domain RAM_01230 PF00107 Zinc-binding dehydrogenase RAM_01230 PF08659 KR domain RAM_01230 PF16197 Ketoacyl-synthetase C-terminal extension RAM_01230 PF00550 Phosphopantetheine attachment site RAM_01230 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_01230 PF14765 Polyketide synthase dehydratase RAM_01230 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_01235 PF04389 Peptidase family M28 RAM_01235 PF02225 PA domain RAM_01240 PF04228 Putative neutral zinc metallopeptidase RAM_01280 PF00106 short chain dehydrogenase RAM_01290 PF00072 Response regulator receiver domain RAM_01295 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RAM_01295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_01295 PF00989 PAS fold RAM_01295 PF17203 Single cache domain 3 RAM_01300 PF00005 ABC transporter RAM_01325 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_01325 PF13191 AAA ATPase domain RAM_01330 PF02983 Alpha-lytic protease prodomain RAM_01335 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_01340 PF01037 Lrp/AsnC ligand binding domain RAM_01345 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_01345 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_01350 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_01350 PF00672 HAMP domain RAM_01355 PF04072 Leucine carboxyl methyltransferase RAM_01360 PF00392 Bacterial regulatory proteins, gntR family RAM_01360 PF07729 FCD domain RAM_01375 PF00155 Aminotransferase class I and II RAM_01380 PF01738 Dienelactone hydrolase family RAM_01385 PF00501 AMP-binding enzyme RAM_01385 PF13193 AMP-binding enzyme C-terminal domain RAM_01390 PF16995 Transmembrane region of lysyl-tRNA synthetase RAM_01390 PF01336 OB-fold nucleic acid binding domain RAM_01390 PF09924 Uncharacterised conserved protein (DUF2156) RAM_01390 PF00152 tRNA synthetases class II (D, K and N) RAM_01400 PF00553 Cellulose binding domain RAM_01400 PF00041 Fibronectin type III domain RAM_01400 PF00704 Glycosyl hydrolases family 18 RAM_01410 PF00202 Aminotransferase class-III RAM_01415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_01415 PF03466 LysR substrate binding domain RAM_01435 PF03990 G5-linked-Ubiquitin-like domain RAM_01435 PF07501 G5 domain RAM_01435 PF06725 3D domain RAM_01445 PF00248 Aldo/keto reductase family RAM_01460 PF04545 Sigma-70, region 4 RAM_01460 PF04539 Sigma-70 region 3 RAM_01460 PF04542 Sigma-70 region 2 RAM_01465 PF13581 Histidine kinase-like ATPase domain RAM_01470 PF02467 Transcription factor WhiB RAM_01490 PF00440 Bacterial regulatory proteins, tetR family RAM_01515 PF00005 ABC transporter RAM_01515 PF13732 Domain of unknown function (DUF4162) RAM_01570 PF02153 Prephenate dehydrogenase RAM_01575 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RAM_01575 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_01595 PF01047 MarR family RAM_01600 PF07859 alpha/beta hydrolase fold RAM_01625 PF10397 Adenylosuccinate lyase C-terminus RAM_01625 PF00206 Lyase RAM_01630 PF06736 Protein of unknown function (DUF1211) RAM_01635 PF04978 Protein of unknown function (DUF664) RAM_01670 PF00300 Histidine phosphatase superfamily (branch 1) RAM_01710 PF00069 Protein kinase domain RAM_01725 PF00465 Iron-containing alcohol dehydrogenase RAM_01730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_01730 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_01730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_01740 PF00313 'Cold-shock' DNA-binding domain RAM_01750 PF01513 ATP-NAD kinase RAM_01755 PF00676 Dehydrogenase E1 component RAM_01770 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_01775 PF16918 Protein kinase G tetratricopeptide repeat RAM_01775 PF00069 Protein kinase domain RAM_01775 PF16919 Protein kinase G rubredoxin domain RAM_01790 PF00589 Phage integrase family RAM_01790 PF14659 Phage integrase, N-terminal SAM-like domain RAM_01795 PF12728 Helix-turn-helix domain RAM_01800 PF12307 Protein of unknown function (DUF3631) RAM_01835 PF00436 Single-strand binding protein family RAM_01885 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_01890 PF13344 Haloacid dehalogenase-like hydrolase RAM_01890 PF00293 NUDIX domain RAM_01910 PF00392 Bacterial regulatory proteins, gntR family RAM_01910 PF00155 Aminotransferase class I and II RAM_01920 PF13344 Haloacid dehalogenase-like hydrolase RAM_01920 PF00293 NUDIX domain RAM_01945 PF13649 Methyltransferase domain RAM_01955 PF00797 N-acetyltransferase RAM_01960 PF03707 Bacterial signalling protein N terminal repeat RAM_01960 PF00563 EAL domain RAM_01960 PF00990 Diguanylate cyclase, GGDEF domain RAM_01985 PF00860 Permease family RAM_01990 PF01717 Cobalamin-independent synthase, Catalytic domain RAM_02000 PF09339 IclR helix-turn-helix domain RAM_02000 PF01614 Bacterial transcriptional regulator RAM_02005 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_02005 PF14759 Reductase C-terminal RAM_02010 PF01494 FAD binding domain RAM_02015 PF02861 Clp amino terminal domain, pathogenicity island component RAM_02020 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RAM_02020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_02085 PF00561 alpha/beta hydrolase fold RAM_02095 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) RAM_02105 PF01425 Amidase RAM_02115 PF00291 Pyridoxal-phosphate dependent enzyme RAM_02135 PF02861 Clp amino terminal domain, pathogenicity island component RAM_02145 PF00155 Aminotransferase class I and II RAM_02145 PF00392 Bacterial regulatory proteins, gntR family RAM_02155 PF00155 Aminotransferase class I and II RAM_02160 PF04286 Protein of unknown function (DUF445) RAM_02180 PF01202 Shikimate kinase RAM_02190 PF01381 Helix-turn-helix RAM_02200 PF10724 Protein of unknown function (DUF2516) RAM_02210 PF02423 Ornithine cyclodeaminase/mu-crystallin family RAM_02215 PF00221 Aromatic amino acid lyase RAM_02245 PF00528 Binding-protein-dependent transport system inner membrane component RAM_02255 PF08241 Methyltransferase domain RAM_02260 PF01047 MarR family RAM_02270 PF00107 Zinc-binding dehydrogenase RAM_02270 PF16884 N-terminal domain of oxidoreductase RAM_02285 PF08240 Alcohol dehydrogenase GroES-like domain RAM_02285 PF00107 Zinc-binding dehydrogenase RAM_02290 PF00551 Formyl transferase RAM_02315 PF01565 FAD binding domain RAM_02315 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RAM_02320 PF17964 Bacterial Ig domain RAM_02320 PF03734 L,D-transpeptidase catalytic domain RAM_02325 PF00561 alpha/beta hydrolase fold RAM_02330 PF00534 Glycosyl transferases group 1 RAM_02330 PF13439 Glycosyltransferase Family 4 RAM_02335 PF10722 Putative bacterial sensory transduction regulator RAM_02345 PF00300 Histidine phosphatase superfamily (branch 1) RAM_02355 PF00248 Aldo/keto reductase family RAM_02360 PF00512 His Kinase A (phospho-acceptor) domain RAM_02360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_02365 PF00072 Response regulator receiver domain RAM_02365 PF00486 Transcriptional regulatory protein, C terminal RAM_02370 PF02541 Ppx/GppA phosphatase family RAM_02380 PF01261 Xylose isomerase-like TIM barrel RAM_02390 PF14748 Pyrroline-5-carboxylate reductase dimerisation RAM_02390 PF03807 NADP oxidoreductase coenzyme F420-dependent RAM_02395 PF12728 Helix-turn-helix domain RAM_02405 PF01370 NAD dependent epimerase/dehydratase family RAM_02410 PF01553 Acyltransferase RAM_02420 PF00196 Bacterial regulatory proteins, luxR family RAM_02420 PF00072 Response regulator receiver domain RAM_02440 PF04542 Sigma-70 region 2 RAM_02440 PF08281 Sigma-70, region 4 RAM_02445 PF00501 AMP-binding enzyme RAM_02445 PF13193 AMP-binding enzyme C-terminal domain RAM_02450 PF05768 Glutaredoxin-like domain (DUF836) RAM_02460 PF02629 CoA binding domain RAM_02460 PF06971 Putative DNA-binding protein N-terminus RAM_02465 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RAM_02465 PF01488 Shikimate / quinate 5-dehydrogenase RAM_02465 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RAM_02470 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RAM_02470 PF03900 Porphobilinogen deaminase, C-terminal domain RAM_02475 PF10414 Sirohaem synthase dimerisation region RAM_02475 PF14824 Sirohaem biosynthesis protein central RAM_02475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_02480 PF16363 GDP-mannose 4,6 dehydratase RAM_02490 PF00490 Delta-aminolevulinic acid dehydratase RAM_02510 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RAM_02515 PF12704 MacB-like periplasmic core domain RAM_02515 PF00005 ABC transporter RAM_02515 PF02687 FtsX-like permease family RAM_02520 PF12704 MacB-like periplasmic core domain RAM_02520 PF02687 FtsX-like permease family RAM_02520 PF00005 ABC transporter RAM_02535 PF00202 Aminotransferase class-III RAM_02540 PF00300 Histidine phosphatase superfamily (branch 1) RAM_02545 PF00578 AhpC/TSA family RAM_02550 PF02683 Cytochrome C biogenesis protein transmembrane region RAM_02560 PF01578 Cytochrome C assembly protein RAM_02565 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_02580 PF01037 Lrp/AsnC ligand binding domain RAM_02595 PF01040 UbiA prenyltransferase family RAM_02605 PF13193 AMP-binding enzyme C-terminal domain RAM_02605 PF00501 AMP-binding enzyme RAM_02610 PF00378 Enoyl-CoA hydratase/isomerase RAM_02615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_02615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_02620 PF01433 Peptidase family M1 domain RAM_02620 PF11838 ERAP1-like C-terminal domain RAM_02630 PF00459 Inositol monophosphatase family RAM_02635 PF00534 Glycosyl transferases group 1 RAM_02635 PF13439 Glycosyltransferase Family 4 RAM_02640 PF13579 Glycosyl transferase 4-like domain RAM_02640 PF00534 Glycosyl transferases group 1 RAM_02655 PF01209 ubiE/COQ5 methyltransferase family RAM_02660 PF01494 FAD binding domain RAM_02665 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RAM_02670 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RAM_02675 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RAM_02680 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RAM_02690 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_02690 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RAM_02690 PF10531 SLBB domain RAM_02695 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RAM_02695 PF01568 Molydopterin dinucleotide binding domain RAM_02695 PF00384 Molybdopterin oxidoreductase RAM_02700 PF00146 NADH dehydrogenase RAM_02705 PF12838 4Fe-4S dicluster domain RAM_02710 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RAM_02715 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RAM_02720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RAM_02720 PF00361 Proton-conducting membrane transporter RAM_02725 PF00361 Proton-conducting membrane transporter RAM_02730 PF00361 Proton-conducting membrane transporter RAM_02755 PF00348 Polyprenyl synthetase RAM_02770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_02775 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RAM_02775 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RAM_02775 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RAM_02780 PF00378 Enoyl-CoA hydratase/isomerase RAM_02785 PF01037 Lrp/AsnC ligand binding domain RAM_02805 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RAM_02805 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RAM_02805 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RAM_02810 PF13439 Glycosyltransferase Family 4 RAM_02810 PF00534 Glycosyl transferases group 1 RAM_02825 PF00733 Asparagine synthase RAM_02825 PF13537 Glutamine amidotransferase domain RAM_02830 PF00107 Zinc-binding dehydrogenase RAM_02850 PF00534 Glycosyl transferases group 1 RAM_02850 PF13439 Glycosyltransferase Family 4 RAM_02870 PF00202 Aminotransferase class-III RAM_02875 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RAM_02885 PF00535 Glycosyl transferase family 2 RAM_02895 PF16221 winged helix-turn-helix RAM_02895 PF16254 Domain of unknown function (DUF4910) RAM_02895 PF09940 Domain of unknown function (DUF2172) RAM_02900 PF16363 GDP-mannose 4,6 dehydratase RAM_02910 PF00483 Nucleotidyl transferase RAM_02915 PF08484 C-methyltransferase C-terminal domain RAM_02915 PF08421 Putative zinc binding domain RAM_02925 PF00296 Luciferase-like monooxygenase RAM_02935 PF01435 Peptidase family M48 RAM_02950 PF00483 Nucleotidyl transferase RAM_02965 PF04461 Protein of unknown function (DUF520) RAM_02975 PF08241 Methyltransferase domain RAM_02980 PF05362 Lon protease (S16) C-terminal proteolytic domain RAM_02980 PF00004 ATPase family associated with various cellular activities (AAA) RAM_02980 PF02190 ATP-dependent protease La (LON) substrate-binding domain RAM_02995 PF03707 Bacterial signalling protein N terminal repeat RAM_02995 PF00563 EAL domain RAM_02995 PF00990 Diguanylate cyclase, GGDEF domain RAM_03000 PF00471 Ribosomal protein L33 RAM_03005 PF13452 N-terminal half of MaoC dehydratase RAM_03025 PF00392 Bacterial regulatory proteins, gntR family RAM_03030 PF00296 Luciferase-like monooxygenase RAM_03035 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RAM_03040 PF02357 Transcription termination factor nusG RAM_03045 PF00298 Ribosomal protein L11, RNA binding domain RAM_03045 PF03946 Ribosomal protein L11, N-terminal domain RAM_03050 PF00687 Ribosomal protein L1p/L10e family RAM_03055 PF00561 alpha/beta hydrolase fold RAM_03065 PF00466 Ribosomal protein L10 RAM_03070 PF16320 Ribosomal protein L7/L12 dimerisation domain RAM_03070 PF00542 Ribosomal protein L7/L12 C-terminal domain RAM_03075 PF00005 ABC transporter RAM_03085 PF02405 Permease MlaE RAM_03110 PF02470 MlaD protein RAM_03135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_03135 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_03150 PF00067 Cytochrome P450 RAM_03155 PF08659 KR domain RAM_03155 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_03155 PF16197 Ketoacyl-synthetase C-terminal extension RAM_03155 PF08990 Erythronolide synthase docking RAM_03155 PF00698 Acyl transferase domain RAM_03155 PF18369 Polyketide synthase dimerisation element domain RAM_03155 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_03155 PF00550 Phosphopantetheine attachment site RAM_03155 PF00975 Thioesterase domain RAM_03160 PF00698 Acyl transferase domain RAM_03160 PF16197 Ketoacyl-synthetase C-terminal extension RAM_03160 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_03160 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_03160 PF08659 KR domain RAM_03160 PF00550 Phosphopantetheine attachment site RAM_03160 PF14765 Polyketide synthase dehydratase RAM_03165 PF08659 KR domain RAM_03165 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_03165 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_03165 PF16197 Ketoacyl-synthetase C-terminal extension RAM_03165 PF08240 Alcohol dehydrogenase GroES-like domain RAM_03165 PF00698 Acyl transferase domain RAM_03165 PF14765 Polyketide synthase dehydratase RAM_03165 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_03165 PF08659 KR domain RAM_03165 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_03165 PF00550 Phosphopantetheine attachment site RAM_03165 PF16197 Ketoacyl-synthetase C-terminal extension RAM_03165 PF08990 Erythronolide synthase docking RAM_03165 PF08240 Alcohol dehydrogenase GroES-like domain RAM_03165 PF00698 Acyl transferase domain RAM_03165 PF00550 Phosphopantetheine attachment site RAM_03165 PF14765 Polyketide synthase dehydratase RAM_03165 PF08990 Erythronolide synthase docking RAM_03170 PF08990 Erythronolide synthase docking RAM_03170 PF00550 Phosphopantetheine attachment site RAM_03170 PF08659 KR domain RAM_03170 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_03170 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_03170 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_03170 PF08659 KR domain RAM_03170 PF00550 Phosphopantetheine attachment site RAM_03170 PF16197 Ketoacyl-synthetase C-terminal extension RAM_03170 PF14765 Polyketide synthase dehydratase RAM_03170 PF14765 Polyketide synthase dehydratase RAM_03170 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_03170 PF08240 Alcohol dehydrogenase GroES-like domain RAM_03170 PF00698 Acyl transferase domain RAM_03170 PF16197 Ketoacyl-synthetase C-terminal extension RAM_03170 PF00698 Acyl transferase domain RAM_03170 PF08990 Erythronolide synthase docking RAM_03170 PF08240 Alcohol dehydrogenase GroES-like domain RAM_03175 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_03175 PF08990 Erythronolide synthase docking RAM_03175 PF16197 Ketoacyl-synthetase C-terminal extension RAM_03175 PF00698 Acyl transferase domain RAM_03175 PF14765 Polyketide synthase dehydratase RAM_03175 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_03175 PF00550 Phosphopantetheine attachment site RAM_03175 PF08240 Alcohol dehydrogenase GroES-like domain RAM_03175 PF08659 KR domain RAM_03180 PF00797 N-acetyltransferase RAM_03190 PF01761 3-dehydroquinate synthase RAM_03195 PF01474 Class-II DAHP synthetase family RAM_03200 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RAM_03200 PF08501 Shikimate dehydrogenase substrate binding domain RAM_03205 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_03210 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_03210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_03215 PF13419 Haloacid dehalogenase-like hydrolase RAM_03220 PF00480 ROK family RAM_03225 PF02585 GlcNAc-PI de-N-acetylase RAM_03230 PF07859 alpha/beta hydrolase fold RAM_03235 PF07690 Major Facilitator Superfamily RAM_03250 PF00067 Cytochrome P450 RAM_03255 PF00067 Cytochrome P450 RAM_03260 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_03265 PF06722 Protein of unknown function (DUF1205) RAM_03270 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RAM_03275 PF00202 Aminotransferase class-III RAM_03280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_03290 PF00296 Luciferase-like monooxygenase RAM_03295 PF03559 NDP-hexose 2,3-dehydratase RAM_03300 PF01494 FAD binding domain RAM_03310 PF00975 Thioesterase domain RAM_03315 PF00067 Cytochrome P450 RAM_03320 PF08241 Methyltransferase domain RAM_03325 PF00456 Transketolase, thiamine diphosphate binding domain RAM_03330 PF02779 Transketolase, pyrimidine binding domain RAM_03335 PF00067 Cytochrome P450 RAM_03340 PF01220 Dehydroquinase class II RAM_03345 PF00196 Bacterial regulatory proteins, luxR family RAM_03350 PF04565 RNA polymerase Rpb2, domain 3 RAM_03350 PF10385 RNA polymerase beta subunit external 1 domain RAM_03350 PF00562 RNA polymerase Rpb2, domain 6 RAM_03350 PF04560 RNA polymerase Rpb2, domain 7 RAM_03350 PF04563 RNA polymerase beta subunit RAM_03350 PF04561 RNA polymerase Rpb2, domain 2 RAM_03355 PF05000 RNA polymerase Rpb1, domain 4 RAM_03355 PF04983 RNA polymerase Rpb1, domain 3 RAM_03355 PF00623 RNA polymerase Rpb1, domain 2 RAM_03355 PF04997 RNA polymerase Rpb1, domain 1 RAM_03355 PF04998 RNA polymerase Rpb1, domain 5 RAM_03365 PF01427 D-ala-D-ala dipeptidase RAM_03370 PF01037 Lrp/AsnC ligand binding domain RAM_03375 PF07690 Major Facilitator Superfamily RAM_03385 PF00027 Cyclic nucleotide-binding domain RAM_03385 PF13302 Acetyltransferase (GNAT) domain RAM_03435 PF00164 Ribosomal protein S12/S23 RAM_03440 PF00177 Ribosomal protein S7p/S5e RAM_03445 PF03144 Elongation factor Tu domain 2 RAM_03445 PF03764 Elongation factor G, domain IV RAM_03445 PF14492 Elongation Factor G, domain II RAM_03445 PF00679 Elongation factor G C-terminus RAM_03445 PF00009 Elongation factor Tu GTP binding domain RAM_03450 PF03144 Elongation factor Tu domain 2 RAM_03450 PF03143 Elongation factor Tu C-terminal domain RAM_03450 PF00009 Elongation factor Tu GTP binding domain RAM_03455 PF00338 Ribosomal protein S10p/S20e RAM_03460 PF00297 Ribosomal protein L3 RAM_03465 PF00573 Ribosomal protein L4/L1 family RAM_03470 PF00276 Ribosomal protein L23 RAM_03475 PF03947 Ribosomal Proteins L2, C-terminal domain RAM_03475 PF00181 Ribosomal Proteins L2, RNA binding domain RAM_03480 PF00203 Ribosomal protein S19 RAM_03485 PF00237 Ribosomal protein L22p/L17e RAM_03490 PF07650 KH domain RAM_03490 PF00189 Ribosomal protein S3, C-terminal domain RAM_03495 PF00252 Ribosomal protein L16p/L10e RAM_03500 PF00831 Ribosomal L29 protein RAM_03505 PF00366 Ribosomal protein S17 RAM_03510 PF00238 Ribosomal protein L14p/L23e RAM_03515 PF00467 KOW motif RAM_03515 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RAM_03520 PF00673 ribosomal L5P family C-terminus RAM_03520 PF00281 Ribosomal protein L5 RAM_03525 PF00253 Ribosomal protein S14p/S29e RAM_03530 PF00410 Ribosomal protein S8 RAM_03535 PF00347 Ribosomal protein L6 RAM_03540 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RAM_03545 PF00333 Ribosomal protein S5, N-terminal domain RAM_03545 PF03719 Ribosomal protein S5, C-terminal domain RAM_03550 PF00327 Ribosomal protein L30p/L7e RAM_03555 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RAM_03565 PF01810 LysE type translocator RAM_03570 PF00344 SecY translocase RAM_03580 PF00557 Metallopeptidase family M24 RAM_03585 PF01176 Translation initiation factor 1A / IF-1 RAM_03590 PF00444 Ribosomal protein L36 RAM_03595 PF00416 Ribosomal protein S13/S18 RAM_03605 PF00411 Ribosomal protein S11 RAM_03610 PF01479 S4 domain RAM_03610 PF00163 Ribosomal protein S4/S9 N-terminal domain RAM_03615 PF01000 RNA polymerase Rpb3/RpoA insert domain RAM_03615 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RAM_03615 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RAM_03620 PF01196 Ribosomal protein L17 RAM_03625 PF01416 tRNA pseudouridine synthase RAM_03645 PF05108 Type VII secretion system ESX-1, transport TM domain B RAM_03660 PF00082 Subtilase family RAM_03670 PF01580 FtsK/SpoIIIE family RAM_03675 PF00012 Hsp70 protein RAM_03695 PF14230 Domain of unknown function (DUF4333) RAM_03705 PF00572 Ribosomal protein L13 RAM_03710 PF00380 Ribosomal protein S9/S16 RAM_03715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RAM_03715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RAM_03715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RAM_03715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RAM_03725 PF00501 AMP-binding enzyme RAM_03755 PF01380 SIS domain RAM_03760 PF01256 Carbohydrate kinase RAM_03760 PF03853 YjeF-related protein N-terminus RAM_03765 PF08220 DeoR-like helix-turn-helix domain RAM_03765 PF00455 DeoR C terminal sensor domain RAM_03770 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_03770 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_03775 PF08402 TOBE domain RAM_03775 PF00005 ABC transporter RAM_03780 PF01168 Alanine racemase, N-terminal domain RAM_03780 PF00842 Alanine racemase, C-terminal domain RAM_03785 PF00364 Biotin-requiring enzyme RAM_03785 PF00561 alpha/beta hydrolase fold RAM_03790 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RAM_03800 PF01039 Carboxyl transferase domain RAM_03800 PF17848 Acetyl-coA carboxylase zinc finger domain RAM_03800 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RAM_03805 PF13193 AMP-binding enzyme C-terminal domain RAM_03805 PF00501 AMP-binding enzyme RAM_03810 PF00814 Glycoprotease family RAM_03815 PF00583 Acetyltransferase (GNAT) family RAM_03820 PF00814 Glycoprotease family RAM_03825 PF02350 UDP-N-acetylglucosamine 2-epimerase RAM_03855 PF13847 Methyltransferase domain RAM_03860 PF01022 Bacterial regulatory protein, arsR family RAM_03865 PF01451 Low molecular weight phosphotyrosine protein phosphatase RAM_03870 PF01758 Sodium Bile acid symporter family RAM_03875 PF01022 Bacterial regulatory protein, arsR family RAM_03880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_03885 PF00166 Chaperonin 10 Kd subunit RAM_03890 PF00118 TCP-1/cpn60 chaperonin family RAM_03895 PF02467 Transcription factor WhiB RAM_03910 PF00072 Response regulator receiver domain RAM_03910 PF00196 Bacterial regulatory proteins, luxR family RAM_03925 PF08281 Sigma-70, region 4 RAM_03925 PF04542 Sigma-70 region 2 RAM_03935 PF17252 Family of unknown function (DUF5319) RAM_03940 PF00571 CBS domain RAM_03940 PF00478 IMP dehydrogenase / GMP reductase domain RAM_03950 PF00478 IMP dehydrogenase / GMP reductase domain RAM_03960 PF05199 GMC oxidoreductase RAM_03970 PF01565 FAD binding domain RAM_03970 PF08031 Berberine and berberine like RAM_03975 PF00171 Aldehyde dehydrogenase family RAM_03980 PF08240 Alcohol dehydrogenase GroES-like domain RAM_03980 PF00107 Zinc-binding dehydrogenase RAM_03980 PF13823 Alcohol dehydrogenase GroES-associated RAM_03995 PF02540 NAD synthase RAM_03995 PF00958 GMP synthase C terminal domain RAM_03995 PF00117 Glutamine amidotransferase class-I RAM_04025 PF00196 Bacterial regulatory proteins, luxR family RAM_04025 PF00072 Response regulator receiver domain RAM_04030 PF00892 EamA-like transporter family RAM_04035 PF03466 LysR substrate binding domain RAM_04035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_04040 PF13191 AAA ATPase domain RAM_04040 PF00069 Protein kinase domain RAM_04045 PF00069 Protein kinase domain RAM_04045 PF03793 PASTA domain RAM_04065 PF01817 Chorismate mutase type II RAM_04075 PF00580 UvrD/REP helicase N-terminal domain RAM_04075 PF13361 UvrD-like helicase C-terminal domain RAM_04085 PF01551 Peptidase family M23 RAM_04085 PF01476 LysM domain RAM_04100 PF00549 CoA-ligase RAM_04100 PF08442 ATP-grasp domain RAM_04105 PF02629 CoA binding domain RAM_04105 PF00549 CoA-ligase RAM_04120 PF00551 Formyl transferase RAM_04125 PF02142 MGS-like domain RAM_04125 PF01808 AICARFT/IMPCHase bienzyme RAM_04165 PF07733 Bacterial DNA polymerase III alpha NTPase domain RAM_04165 PF01336 OB-fold nucleic acid binding domain RAM_04165 PF02811 PHP domain RAM_04165 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RAM_04165 PF14579 Helix-hairpin-helix motif RAM_04185 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RAM_04185 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RAM_04195 PF07690 Major Facilitator Superfamily RAM_04200 PF01022 Bacterial regulatory protein, arsR family RAM_04205 PF07690 Major Facilitator Superfamily RAM_04215 PF12105 SpoU, rRNA methylase, C-terminal RAM_04215 PF00588 SpoU rRNA Methylase family RAM_04240 PF08241 Methyltransferase domain RAM_04255 PF00180 Isocitrate/isopropylmalate dehydrogenase RAM_04275 PF12706 Beta-lactamase superfamily domain RAM_04290 PF00579 tRNA synthetases class I (W and Y) RAM_04300 PF03631 Virulence factor BrkB RAM_04310 PF01638 HxlR-like helix-turn-helix RAM_04325 PF00082 Subtilase family RAM_04335 PF13085 2Fe-2S iron-sulfur cluster binding domain RAM_04340 PF00890 FAD binding domain RAM_04340 PF02910 Fumarate reductase flavoprotein C-term RAM_04350 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RAM_04355 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_04355 PF16499 Alpha galactosidase A RAM_04360 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation RAM_04360 PF10566 Glycoside hydrolase 97 RAM_04360 PF14508 Glycosyl-hydrolase 97 N-terminal RAM_04385 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_04390 PF02885 Glycosyl transferase family, helical bundle domain RAM_04390 PF00591 Glycosyl transferase family, a/b domain RAM_04390 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RAM_04400 PF00962 Adenosine/AMP deaminase RAM_04405 PF07690 Major Facilitator Superfamily RAM_04415 PF08148 DSHCT (NUC185) domain RAM_04415 PF00270 DEAD/DEAH box helicase RAM_04415 PF00271 Helicase conserved C-terminal domain RAM_04430 PF01638 HxlR-like helix-turn-helix RAM_04440 PF00107 Zinc-binding dehydrogenase RAM_04440 PF08240 Alcohol dehydrogenase GroES-like domain RAM_04450 PF00528 Binding-protein-dependent transport system inner membrane component RAM_04455 PF00528 Binding-protein-dependent transport system inner membrane component RAM_04460 PF00975 Thioesterase domain RAM_04465 PF00067 Cytochrome P450 RAM_04470 PF00067 Cytochrome P450 RAM_04490 PF00171 Aldehyde dehydrogenase family RAM_04495 PF00171 Aldehyde dehydrogenase family RAM_04500 PF01791 DeoC/LacD family aldolase RAM_04525 PF04545 Sigma-70, region 4 RAM_04525 PF04542 Sigma-70 region 2 RAM_04540 PF09278 MerR, DNA binding RAM_04540 PF00376 MerR family regulatory protein RAM_04545 PF00248 Aldo/keto reductase family RAM_04555 PF01070 FMN-dependent dehydrogenase RAM_04565 PF00999 Sodium/hydrogen exchanger family RAM_04570 PF00072 Response regulator receiver domain RAM_04570 PF00486 Transcriptional regulatory protein, C terminal RAM_04575 PF00672 HAMP domain RAM_04575 PF00512 His Kinase A (phospho-acceptor) domain RAM_04575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_04585 PF03129 Anticodon binding domain RAM_04585 PF13393 Histidyl-tRNA synthetase RAM_04595 PF01979 Amidohydrolase family RAM_04620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RAM_04620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RAM_04620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RAM_04620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RAM_04630 PF01048 Phosphorylase superfamily RAM_04650 PF00069 Protein kinase domain RAM_04655 PF01642 Methylmalonyl-CoA mutase RAM_04660 PF02310 B12 binding domain RAM_04660 PF01642 Methylmalonyl-CoA mutase RAM_04675 PF01546 Peptidase family M20/M25/M40 RAM_04675 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_04690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_04690 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_04710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_04710 PF18029 Glyoxalase-like domain RAM_04715 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_04715 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_04720 PF00230 Major intrinsic protein RAM_04725 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RAM_04725 PF01266 FAD dependent oxidoreductase RAM_04760 PF02785 Biotin carboxylase C-terminal domain RAM_04760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_04760 PF00364 Biotin-requiring enzyme RAM_04760 PF00289 Biotin carboxylase, N-terminal domain RAM_04775 PF00375 Sodium:dicarboxylate symporter family RAM_04780 PF02545 Maf-like protein RAM_04785 PF14310 Fibronectin type III-like domain RAM_04785 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_04785 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_04790 PF07690 Major Facilitator Superfamily RAM_04805 PF00296 Luciferase-like monooxygenase RAM_04810 PF01047 MarR family RAM_04820 PF01039 Carboxyl transferase domain RAM_04830 PF00196 Bacterial regulatory proteins, luxR family RAM_04830 PF00072 Response regulator receiver domain RAM_04835 PF07730 Histidine kinase RAM_04855 PF00440 Bacterial regulatory proteins, tetR family RAM_04860 PF01494 FAD binding domain RAM_04865 PF01638 HxlR-like helix-turn-helix RAM_04880 PF12833 Helix-turn-helix domain RAM_04880 PF01965 DJ-1/PfpI family RAM_04890 PF03466 LysR substrate binding domain RAM_04890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_04905 PF01209 ubiE/COQ5 methyltransferase family RAM_04915 PF04542 Sigma-70 region 2 RAM_04915 PF08281 Sigma-70, region 4 RAM_04920 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_04920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RAM_04940 PF07730 Histidine kinase RAM_04945 PF00072 Response regulator receiver domain RAM_04945 PF00196 Bacterial regulatory proteins, luxR family RAM_04950 PF01476 LysM domain RAM_04950 PF00877 NlpC/P60 family RAM_04950 PF08239 Bacterial SH3 domain RAM_04955 PF02237 Biotin protein ligase C terminal domain RAM_04955 PF03099 Biotin/lipoate A/B protein ligase family RAM_04965 PF00682 HMGL-like RAM_04980 PF07971 Glycosyl hydrolase family 92 RAM_04980 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_04985 PF00459 Inositol monophosphatase family RAM_04990 PF00072 Response regulator receiver domain RAM_04990 PF00486 Transcriptional regulatory protein, C terminal RAM_04995 PF00512 His Kinase A (phospho-acceptor) domain RAM_04995 PF00672 HAMP domain RAM_04995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_05000 PF00072 Response regulator receiver domain RAM_05000 PF00196 Bacterial regulatory proteins, luxR family RAM_05005 PF00196 Bacterial regulatory proteins, luxR family RAM_05005 PF00072 Response regulator receiver domain RAM_05015 PF07690 Major Facilitator Superfamily RAM_05040 PF09594 Glycosyltransferase family 87 RAM_05045 PF09594 Glycosyltransferase family 87 RAM_05050 PF02222 ATP-grasp domain RAM_05050 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RAM_05055 PF00731 AIR carboxylase RAM_05070 PF13193 AMP-binding enzyme C-terminal domain RAM_05070 PF00501 AMP-binding enzyme RAM_05075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_05075 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_05075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_05085 PF00561 alpha/beta hydrolase fold RAM_05115 PF03816 Cell envelope-related transcriptional attenuator domain RAM_05115 PF13399 LytR cell envelope-related transcriptional attenuator RAM_05120 PF03816 Cell envelope-related transcriptional attenuator domain RAM_05120 PF13399 LytR cell envelope-related transcriptional attenuator RAM_05125 PF16363 GDP-mannose 4,6 dehydratase RAM_05130 PF04321 RmlD substrate binding domain RAM_05135 PF00534 Glycosyl transferases group 1 RAM_05135 PF13439 Glycosyltransferase Family 4 RAM_05150 PF13439 Glycosyltransferase Family 4 RAM_05150 PF00534 Glycosyl transferases group 1 RAM_05170 PF00483 Nucleotidyl transferase RAM_05185 PF00392 Bacterial regulatory proteins, gntR family RAM_05200 PF00881 Nitroreductase family RAM_05200 PF01996 F420-0:Gamma-glutamyl ligase RAM_05220 PF00037 4Fe-4S binding domain RAM_05225 PF00155 Aminotransferase class I and II RAM_05235 PF01494 FAD binding domain RAM_05245 PF14602 Hexapeptide repeat of succinyl-transferase RAM_05245 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle RAM_05255 PF07687 Peptidase dimerisation domain RAM_05255 PF01546 Peptidase family M20/M25/M40 RAM_05270 PF01483 Proprotein convertase P-domain RAM_05270 PF04389 Peptidase family M28 RAM_05275 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_05275 PF04389 Peptidase family M28 RAM_05275 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_05285 PF04389 Peptidase family M28 RAM_05285 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_05285 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_05295 PF03641 Possible lysine decarboxylase RAM_05300 PF03641 Possible lysine decarboxylase RAM_05325 PF01757 Acyltransferase family RAM_05340 PF00535 Glycosyl transferase family 2 RAM_05345 PF00664 ABC transporter transmembrane region RAM_05345 PF00005 ABC transporter RAM_05350 PF00005 ABC transporter RAM_05350 PF00664 ABC transporter transmembrane region RAM_05355 PF02322 Cytochrome bd terminal oxidase subunit II RAM_05360 PF01654 Cytochrome bd terminal oxidase subunit I RAM_05385 PF03352 Methyladenine glycosylase RAM_05390 PF00378 Enoyl-CoA hydratase/isomerase RAM_05400 PF02789 Cytosol aminopeptidase family, N-terminal domain RAM_05400 PF00883 Cytosol aminopeptidase family, catalytic domain RAM_05405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_05405 PF03466 LysR substrate binding domain RAM_05410 PF07690 Major Facilitator Superfamily RAM_05420 PF01596 O-methyltransferase RAM_05425 PF04542 Sigma-70 region 2 RAM_05425 PF08281 Sigma-70, region 4 RAM_05435 PF13180 PDZ domain RAM_05435 PF00595 PDZ domain RAM_05440 PF02416 mttA/Hcf106 family RAM_05445 PF10609 NUBPL iron-transfer P-loop NTPase RAM_05445 PF01883 Iron-sulfur cluster assembly protein RAM_05455 PF00571 CBS domain RAM_05455 PF03448 MgtE intracellular N domain RAM_05455 PF01769 Divalent cation transporter RAM_05460 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase RAM_05465 PF01145 SPFH domain / Band 7 family RAM_05480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_05480 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_05480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_05490 PF01547 Bacterial extracellular solute-binding protein RAM_05495 PF00528 Binding-protein-dependent transport system inner membrane component RAM_05500 PF00528 Binding-protein-dependent transport system inner membrane component RAM_05505 PF00005 ABC transporter RAM_05505 PF17912 MalK OB fold domain RAM_05520 PF17925 Tetracyclin repressor-like, C-terminal domain RAM_05520 PF00440 Bacterial regulatory proteins, tetR family RAM_05525 PF07690 Major Facilitator Superfamily RAM_05530 PF00072 Response regulator receiver domain RAM_05530 PF00196 Bacterial regulatory proteins, luxR family RAM_05535 PF07730 Histidine kinase RAM_05545 PF04542 Sigma-70 region 2 RAM_05545 PF04545 Sigma-70, region 4 RAM_05570 PF01544 CorA-like Mg2+ transporter protein RAM_05585 PF13344 Haloacid dehalogenase-like hydrolase RAM_05585 PF00293 NUDIX domain RAM_05600 PF02811 PHP domain RAM_05605 PF01914 MarC family integral membrane protein RAM_05630 PF00271 Helicase conserved C-terminal domain RAM_05630 PF00270 DEAD/DEAH box helicase RAM_05655 PF00440 Bacterial regulatory proteins, tetR family RAM_05665 PF12697 Alpha/beta hydrolase family RAM_05670 PF00440 Bacterial regulatory proteins, tetR family RAM_05670 PF08362 YcdC-like protein, C-terminal region RAM_05675 PF12697 Alpha/beta hydrolase family RAM_05685 PF00581 Rhodanese-like domain RAM_05685 PF00899 ThiF family RAM_05695 PF00384 Molybdopterin oxidoreductase RAM_05695 PF01568 Molydopterin dinucleotide binding domain RAM_05695 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_05700 PF04324 BFD-like [2Fe-2S] binding domain RAM_05700 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RAM_05700 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RAM_05700 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_05700 PF18267 Rubredoxin NAD+ reductase C-terminal domain RAM_05705 PF07690 Major Facilitator Superfamily RAM_05710 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_05710 PF18267 Rubredoxin NAD+ reductase C-terminal domain RAM_05710 PF04324 BFD-like [2Fe-2S] binding domain RAM_05710 PF13806 Rieske-like [2Fe-2S] domain RAM_05710 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RAM_05710 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RAM_05715 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RAM_05715 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_05715 PF13806 Rieske-like [2Fe-2S] domain RAM_05715 PF18267 Rubredoxin NAD+ reductase C-terminal domain RAM_05715 PF04324 BFD-like [2Fe-2S] binding domain RAM_05715 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RAM_05740 PF08279 HTH domain RAM_05740 PF13280 WYL domain RAM_05755 PF00580 UvrD/REP helicase N-terminal domain RAM_05755 PF13361 UvrD-like helicase C-terminal domain RAM_05760 PF13361 UvrD-like helicase C-terminal domain RAM_05760 PF00580 UvrD/REP helicase N-terminal domain RAM_05780 PF04228 Putative neutral zinc metallopeptidase RAM_05795 PF14258 Domain of unknown function (DUF4350) RAM_05800 PF17863 AAA lid domain RAM_05800 PF07726 ATPase family associated with various cellular activities (AAA) RAM_05825 PF04228 Putative neutral zinc metallopeptidase RAM_05845 PF05193 Peptidase M16 inactive domain RAM_05845 PF00675 Insulinase (Peptidase family M16) RAM_05850 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain RAM_05850 PF09297 NADH pyrophosphatase zinc ribbon domain RAM_05850 PF00293 NUDIX domain RAM_05855 PF01047 MarR family RAM_05855 PF00480 ROK family RAM_05865 PF00528 Binding-protein-dependent transport system inner membrane component RAM_05870 PF00528 Binding-protein-dependent transport system inner membrane component RAM_05875 PF02056 Family 4 glycosyl hydrolase RAM_05875 PF11975 Family 4 glycosyl hydrolase C-terminal domain RAM_05890 PF01022 Bacterial regulatory protein, arsR family RAM_05900 PF02447 GntP family permease RAM_05915 PF03186 CobD/Cbib protein RAM_05930 PF02104 SURF1 family RAM_05935 PF01451 Low molecular weight phosphotyrosine protein phosphatase RAM_05945 PF01817 Chorismate mutase type II RAM_05950 PF01784 NIF3 (NGG1p interacting factor 3) RAM_05955 PF02591 C4-type zinc ribbon domain RAM_05960 PF00300 Histidine phosphatase superfamily (branch 1) RAM_05960 PF13456 Reverse transcriptase-like RAM_05970 PF02040 Arsenical pump membrane protein RAM_05975 PF00196 Bacterial regulatory proteins, luxR family RAM_05975 PF00072 Response regulator receiver domain RAM_05985 PF04542 Sigma-70 region 2 RAM_05985 PF04545 Sigma-70, region 4 RAM_06000 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_06000 PF14759 Reductase C-terminal RAM_06035 PF00877 NlpC/P60 family RAM_06055 PF08461 Ribonuclease R winged-helix domain RAM_06055 PF00773 RNB domain RAM_06055 PF08206 Ribonuclease B OB domain RAM_06055 PF17876 Cold shock domain RAM_06060 PF01497 Periplasmic binding protein RAM_06065 PF00171 Aldehyde dehydrogenase family RAM_06070 PF00202 Aminotransferase class-III RAM_06090 PF07729 FCD domain RAM_06090 PF00392 Bacterial regulatory proteins, gntR family RAM_06095 PF00171 Aldehyde dehydrogenase family RAM_06100 PF00005 ABC transporter RAM_06100 PF08402 TOBE domain RAM_06105 PF13416 Bacterial extracellular solute-binding protein RAM_06110 PF00528 Binding-protein-dependent transport system inner membrane component RAM_06115 PF00528 Binding-protein-dependent transport system inner membrane component RAM_06120 PF00561 alpha/beta hydrolase fold RAM_06125 PF02673 Bacitracin resistance protein BacA RAM_06135 PF02548 Ketopantoate hydroxymethyltransferase RAM_06140 PF09924 Uncharacterised conserved protein (DUF2156) RAM_06140 PF00152 tRNA synthetases class II (D, K and N) RAM_06140 PF01336 OB-fold nucleic acid binding domain RAM_06140 PF16995 Transmembrane region of lysyl-tRNA synthetase RAM_06150 PF04978 Protein of unknown function (DUF664) RAM_06165 PF02540 NAD synthase RAM_06165 PF00795 Carbon-nitrogen hydrolase RAM_06170 PF07517 SecA DEAD-like domain RAM_06170 PF07516 SecA Wing and Scaffold domain RAM_06170 PF01043 SecA preprotein cross-linking domain RAM_06175 PF00561 alpha/beta hydrolase fold RAM_06190 PF00120 Glutamine synthetase, catalytic domain RAM_06190 PF03951 Glutamine synthetase, beta-Grasp domain RAM_06195 PF01425 Amidase RAM_06200 PF01037 Lrp/AsnC ligand binding domain RAM_06210 PF00117 Glutamine amidotransferase class-I RAM_06210 PF00958 GMP synthase C terminal domain RAM_06210 PF02540 NAD synthase RAM_06215 PF01384 Phosphate transporter family RAM_06220 PF01384 Phosphate transporter family RAM_06225 PF03710 Glutamate-ammonia ligase adenylyltransferase RAM_06225 PF08335 GlnD PII-uridylyltransferase RAM_06235 PF00120 Glutamine synthetase, catalytic domain RAM_06235 PF03951 Glutamine synthetase, beta-Grasp domain RAM_06250 PF13829 Domain of unknown function (DUF4191) RAM_06255 PF00570 HRDC domain RAM_06255 PF13361 UvrD-like helicase C-terminal domain RAM_06255 PF00580 UvrD/REP helicase N-terminal domain RAM_06265 PF02467 Transcription factor WhiB RAM_06295 PF03109 ABC1 family RAM_06315 PF05362 Lon protease (S16) C-terminal proteolytic domain RAM_06315 PF13180 PDZ domain RAM_06325 PF03699 Uncharacterised protein family (UPF0182) RAM_06330 PF01494 FAD binding domain RAM_06335 PF00440 Bacterial regulatory proteins, tetR family RAM_06335 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_06345 PF03462 PCRF domain RAM_06345 PF00472 RF-1 domain RAM_06350 PF00005 ABC transporter RAM_06355 PF18075 FtsX extracellular domain RAM_06355 PF02687 FtsX-like permease family RAM_06360 PF01668 SmpB protein RAM_06385 PF00072 Response regulator receiver domain RAM_06385 PF00196 Bacterial regulatory proteins, luxR family RAM_06390 PF07730 Histidine kinase RAM_06390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_06405 PF00990 Diguanylate cyclase, GGDEF domain RAM_06405 PF17151 Periplasmic sensor domain RAM_06420 PF00221 Aromatic amino acid lyase RAM_06425 PF17392 Urocanase C-terminal domain RAM_06425 PF01175 Urocanase Rossmann-like domain RAM_06425 PF17391 Urocanase N-terminal domain RAM_06430 PF01546 Peptidase family M20/M25/M40 RAM_06430 PF07687 Peptidase dimerisation domain RAM_06435 PF01979 Amidohydrolase family RAM_06440 PF01979 Amidohydrolase family RAM_06445 PF01494 FAD binding domain RAM_06460 PF01384 Phosphate transporter family RAM_06480 PF07730 Histidine kinase RAM_06485 PF00072 Response regulator receiver domain RAM_06485 PF00196 Bacterial regulatory proteins, luxR family RAM_06490 PF01494 FAD binding domain RAM_06510 PF00005 ABC transporter RAM_06515 PF00270 DEAD/DEAH box helicase RAM_06515 PF04408 Helicase associated domain (HA2) RAM_06515 PF08482 ATP-dependent helicase C-terminal RAM_06515 PF00271 Helicase conserved C-terminal domain RAM_06520 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_06530 PF13462 Thioredoxin RAM_06530 PF00069 Protein kinase domain RAM_06540 PF00877 NlpC/P60 family RAM_06555 PF01494 FAD binding domain RAM_06565 PF04978 Protein of unknown function (DUF664) RAM_06570 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_06570 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_06570 PF14310 Fibronectin type III-like domain RAM_06580 PF00521 DNA gyrase/topoisomerase IV, subunit A RAM_06580 PF03989 DNA gyrase C-terminal domain, beta-propeller RAM_06585 PF00204 DNA gyrase B RAM_06585 PF01751 Toprim domain RAM_06585 PF00986 DNA gyrase B subunit, carboxyl terminus RAM_06585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_06600 PF03358 NADPH-dependent FMN reductase RAM_06630 PF02653 Branched-chain amino acid transport system / permease component RAM_06635 PF02653 Branched-chain amino acid transport system / permease component RAM_06640 PF00005 ABC transporter RAM_06645 PF13407 Periplasmic binding protein domain RAM_06650 PF00356 Bacterial regulatory proteins, lacI family RAM_06655 PF02463 RecF/RecN/SMC N terminal domain RAM_06660 PF01638 HxlR-like helix-turn-helix RAM_06670 PF00440 Bacterial regulatory proteins, tetR family RAM_06670 PF13305 Tetracyclin repressor-like, C-terminal domain RAM_06685 PF17760 UvrA interaction domain RAM_06685 PF00005 ABC transporter RAM_06685 PF17755 UvrA DNA-binding domain RAM_06715 PF12706 Beta-lactamase superfamily domain RAM_06730 PF00089 Trypsin RAM_06730 PF02983 Alpha-lytic protease prodomain RAM_06735 PF03848 Tellurite resistance protein TehB RAM_06750 PF00067 Cytochrome P450 RAM_06755 PF01336 OB-fold nucleic acid binding domain RAM_06755 PF00152 tRNA synthetases class II (D, K and N) RAM_06775 PF00561 alpha/beta hydrolase fold RAM_06780 PF07995 Glucose / Sorbosone dehydrogenase RAM_06790 PF01906 Putative heavy-metal-binding RAM_06795 PF01906 Putative heavy-metal-binding RAM_06800 PF00294 pfkB family carbohydrate kinase RAM_06805 PF02056 Family 4 glycosyl hydrolase RAM_06805 PF11975 Family 4 glycosyl hydrolase C-terminal domain RAM_06815 PF00890 FAD binding domain RAM_06820 PF00296 Luciferase-like monooxygenase RAM_06825 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_06825 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RAM_06835 PF06441 Epoxide hydrolase N terminus RAM_06870 PF00809 Pterin binding enzyme RAM_06880 PF00005 ABC transporter RAM_06920 PF00652 Ricin-type beta-trefoil lectin domain RAM_06920 PF16483 Beta-1,3-glucanase RAM_06925 PF00892 EamA-like transporter family RAM_06930 PF01047 MarR family RAM_06940 PF03830 PTS system sorbose subfamily IIB component RAM_06945 PF03613 PTS system mannose/fructose/sorbose family IID component RAM_06950 PF03610 PTS system fructose IIA component RAM_06965 PF03704 Bacterial transcriptional activator domain RAM_06965 PF00931 NB-ARC domain RAM_06965 PF00486 Transcriptional regulatory protein, C terminal RAM_06975 PF07690 Major Facilitator Superfamily RAM_06980 PF09084 NMT1/THI5 like RAM_06985 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_06985 PF00005 ABC transporter RAM_06990 PF00005 ABC transporter RAM_07010 PF00440 Bacterial regulatory proteins, tetR family RAM_07030 PF00196 Bacterial regulatory proteins, luxR family RAM_07030 PF00072 Response regulator receiver domain RAM_07040 PF00005 ABC transporter RAM_07050 PF00457 Glycosyl hydrolases family 11 RAM_07055 PF00457 Glycosyl hydrolases family 11 RAM_07055 PF01522 Polysaccharide deacetylase RAM_07060 PF00005 ABC transporter RAM_07095 PF07690 Major Facilitator Superfamily RAM_07100 PF00171 Aldehyde dehydrogenase family RAM_07110 PF00723 Glycosyl hydrolases family 15 RAM_07115 PF00107 Zinc-binding dehydrogenase RAM_07115 PF08240 Alcohol dehydrogenase GroES-like domain RAM_07135 PF00296 Luciferase-like monooxygenase RAM_07150 PF17964 Bacterial Ig domain RAM_07150 PF03734 L,D-transpeptidase catalytic domain RAM_07160 PF07690 Major Facilitator Superfamily RAM_07165 PF01433 Peptidase family M1 domain RAM_07165 PF11838 ERAP1-like C-terminal domain RAM_07190 PF05593 RHS Repeat RAM_07190 PF03527 RHS protein RAM_07225 PF08659 KR domain RAM_07225 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_07225 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_07225 PF14765 Polyketide synthase dehydratase RAM_07225 PF00698 Acyl transferase domain RAM_07225 PF16197 Ketoacyl-synthetase C-terminal extension RAM_07225 PF08240 Alcohol dehydrogenase GroES-like domain RAM_07225 PF00550 Phosphopantetheine attachment site RAM_07225 PF00107 Zinc-binding dehydrogenase RAM_07255 PF03259 Roadblock/LC7 domain RAM_07270 PF00067 Cytochrome P450 RAM_07285 PF03466 LysR substrate binding domain RAM_07285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_07300 PF01494 FAD binding domain RAM_07305 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_07305 PF00440 Bacterial regulatory proteins, tetR family RAM_07335 PF00248 Aldo/keto reductase family RAM_07345 PF08281 Sigma-70, region 4 RAM_07345 PF04542 Sigma-70 region 2 RAM_07380 PF00486 Transcriptional regulatory protein, C terminal RAM_07380 PF00931 NB-ARC domain RAM_07380 PF03704 Bacterial transcriptional activator domain RAM_07390 PF03055 Retinal pigment epithelial membrane protein RAM_07420 PF00682 HMGL-like RAM_07425 PF13193 AMP-binding enzyme C-terminal domain RAM_07425 PF00501 AMP-binding enzyme RAM_07430 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_07430 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_07440 PF00072 Response regulator receiver domain RAM_07440 PF00196 Bacterial regulatory proteins, luxR family RAM_07465 PF00753 Metallo-beta-lactamase superfamily RAM_07465 PF12706 Beta-lactamase superfamily domain RAM_07470 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_07475 PF00989 PAS fold RAM_07475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_07475 PF00512 His Kinase A (phospho-acceptor) domain RAM_07480 PF00135 Carboxylesterase family RAM_07520 PF02423 Ornithine cyclodeaminase/mu-crystallin family RAM_07535 PF00174 Oxidoreductase molybdopterin binding domain RAM_07540 PF00175 Oxidoreductase NAD-binding domain RAM_07540 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_07540 PF00970 Oxidoreductase FAD-binding domain RAM_07565 PF00350 Dynamin family RAM_07570 PF00350 Dynamin family RAM_07580 PF01638 HxlR-like helix-turn-helix RAM_07585 PF13193 AMP-binding enzyme C-terminal domain RAM_07585 PF00501 AMP-binding enzyme RAM_07600 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_07605 PF01270 Glycosyl hydrolases family 8 RAM_07610 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_07610 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_07615 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_07620 PF00528 Binding-protein-dependent transport system inner membrane component RAM_07625 PF00005 ABC transporter RAM_07630 PF08348 YheO-like PAS domain RAM_07630 PF13309 HTH domain RAM_07640 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_07645 PF00561 alpha/beta hydrolase fold RAM_07650 PF00005 ABC transporter RAM_07670 PF11799 impB/mucB/samB family C-terminal domain RAM_07670 PF11798 IMS family HHH motif RAM_07670 PF00817 impB/mucB/samB family RAM_07680 PF07729 FCD domain RAM_07680 PF00392 Bacterial regulatory proteins, gntR family RAM_07685 PF02653 Branched-chain amino acid transport system / permease component RAM_07690 PF00005 ABC transporter RAM_07695 PF13407 Periplasmic binding protein domain RAM_07730 PF13407 Periplasmic binding protein domain RAM_07740 PF07470 Glycosyl Hydrolase Family 88 RAM_07765 PF16655 PhoD-like phosphatase, N-terminal domain RAM_07765 PF09423 PhoD-like phosphatase RAM_07770 PF13229 Right handed beta helix region RAM_07770 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RAM_07770 PF12708 Pectate lyase superfamily protein RAM_07775 PF07470 Glycosyl Hydrolase Family 88 RAM_07785 PF01204 Trehalase RAM_07790 PF00480 ROK family RAM_07800 PF17200 Single Cache domain 2 RAM_07800 PF07730 Histidine kinase RAM_07810 PF00106 short chain dehydrogenase RAM_07815 PF02547 Queuosine biosynthesis protein RAM_07830 PF00005 ABC transporter RAM_07835 PF00528 Binding-protein-dependent transport system inner membrane component RAM_07850 PF00271 Helicase conserved C-terminal domain RAM_07850 PF00270 DEAD/DEAH box helicase RAM_07875 PF17674 HHH domain RAM_07875 PF09371 Tex-like protein N-terminal domain RAM_07875 PF16921 Tex protein YqgF-like domain RAM_07875 PF00575 S1 RNA binding domain RAM_07880 PF02018 Carbohydrate binding domain RAM_07880 PF00041 Fibronectin type III domain RAM_07880 PF00704 Glycosyl hydrolases family 18 RAM_07885 PF05199 GMC oxidoreductase RAM_07890 PF00743 Flavin-binding monooxygenase-like RAM_07895 PF00743 Flavin-binding monooxygenase-like RAM_07905 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term RAM_07905 PF12833 Helix-turn-helix domain RAM_07925 PF18665 Tetracyclin repressor-like, C-terminal domain RAM_07925 PF00440 Bacterial regulatory proteins, tetR family RAM_07940 PF01575 MaoC like domain RAM_07940 PF00171 Aldehyde dehydrogenase family RAM_07945 PF05138 Phenylacetic acid catabolic protein RAM_07950 PF06243 Phenylacetic acid degradation B RAM_07955 PF05138 Phenylacetic acid catabolic protein RAM_07960 PF01883 Iron-sulfur cluster assembly protein RAM_07965 PF00970 Oxidoreductase FAD-binding domain RAM_07965 PF00175 Oxidoreductase NAD-binding domain RAM_07965 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_07980 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_07980 PF16701 Adenylate cyclase regulatory domain RAM_07985 PF00582 Universal stress protein family RAM_08015 PF00108 Thiolase, N-terminal domain RAM_08015 PF02803 Thiolase, C-terminal domain RAM_08025 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_08030 PF00155 Aminotransferase class I and II RAM_08030 PF00392 Bacterial regulatory proteins, gntR family RAM_08035 PF02627 Carboxymuconolactone decarboxylase family RAM_08045 PF00474 Sodium:solute symporter family RAM_08055 PF00474 Sodium:solute symporter family RAM_08065 PF04397 LytTr DNA-binding domain RAM_08065 PF00072 Response regulator receiver domain RAM_08070 PF06580 Histidine kinase RAM_08070 PF07694 5TMR of 5TMR-LYT RAM_08080 PF13407 Periplasmic binding protein domain RAM_08085 PF02653 Branched-chain amino acid transport system / permease component RAM_08090 PF00005 ABC transporter RAM_08100 PF00356 Bacterial regulatory proteins, lacI family RAM_08105 PF07971 Glycosyl hydrolase family 92 RAM_08105 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_08110 PF07971 Glycosyl hydrolase family 92 RAM_08110 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_08120 PF01047 MarR family RAM_08125 PF01910 Thiamine-binding protein RAM_08135 PF00085 Thioredoxin RAM_08145 PF11897 Protein of unknown function (DUF3417) RAM_08145 PF00343 Carbohydrate phosphorylase RAM_08170 PF00296 Luciferase-like monooxygenase RAM_08190 PF00005 ABC transporter RAM_08195 PF00378 Enoyl-CoA hydratase/isomerase RAM_08200 PF01209 ubiE/COQ5 methyltransferase family RAM_08205 PF18096 THUMP domain-like RAM_08215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_08215 PF03466 LysR substrate binding domain RAM_08220 PF02839 Carbohydrate binding domain RAM_08230 PF00155 Aminotransferase class I and II RAM_08230 PF00392 Bacterial regulatory proteins, gntR family RAM_08240 PF01494 FAD binding domain RAM_08265 PF00248 Aldo/keto reductase family RAM_08270 PF01494 FAD binding domain RAM_08275 PF00877 NlpC/P60 family RAM_08280 PF01156 Inosine-uridine preferring nucleoside hydrolase RAM_08285 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_08300 PF00585 C-terminal regulatory domain of Threonine dehydratase RAM_08300 PF00291 Pyridoxal-phosphate dependent enzyme RAM_08315 PF09856 Predicted transcriptional regulator (DUF2083) RAM_08315 PF06114 IrrE N-terminal-like domain RAM_08315 PF01381 Helix-turn-helix RAM_08320 PF00463 Isocitrate lyase family RAM_08365 PF00534 Glycosyl transferases group 1 RAM_08365 PF13439 Glycosyltransferase Family 4 RAM_08370 PF00703 Glycosyl hydrolases family 2 RAM_08370 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_08370 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_08375 PF00255 Glutathione peroxidase RAM_08380 PF09210 Domain of unknown function (DUF1957) RAM_08380 PF03065 Glycosyl hydrolase family 57 RAM_08385 PF08241 Methyltransferase domain RAM_08395 PF02645 Uncharacterised protein, DegV family COG1307 RAM_08400 PF01012 Electron transfer flavoprotein domain RAM_08405 PF01012 Electron transfer flavoprotein domain RAM_08405 PF00766 Electron transfer flavoprotein FAD-binding domain RAM_08425 PF00072 Response regulator receiver domain RAM_08425 PF00196 Bacterial regulatory proteins, luxR family RAM_08430 PF07690 Major Facilitator Superfamily RAM_08435 PF00266 Aminotransferase class-V RAM_08460 PF00753 Metallo-beta-lactamase superfamily RAM_08480 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RAM_08480 PF00533 BRCA1 C Terminus (BRCT) domain RAM_08480 PF01653 NAD-dependent DNA ligase adenylation domain RAM_08480 PF03120 NAD-dependent DNA ligase OB-fold domain RAM_08480 PF12826 Helix-hairpin-helix motif RAM_08495 PF02686 Glu-tRNAGln amidotransferase C subunit RAM_08500 PF01425 Amidase RAM_08505 PF02934 GatB/GatE catalytic domain RAM_08505 PF02637 GatB domain RAM_08530 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_08530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_08540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_08540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_08550 PF00920 Dehydratase family RAM_08560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_08560 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_08560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_08565 PF10369 Small subunit of acetolactate synthase RAM_08570 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RAM_08570 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RAM_08600 PF00440 Bacterial regulatory proteins, tetR family RAM_08605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_08605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_08605 PF01842 ACT domain RAM_08610 PF05922 Peptidase inhibitor I9 RAM_08610 PF13860 FlgD Ig-like domain RAM_08610 PF00082 Subtilase family RAM_08610 PF02225 PA domain RAM_08615 PF00180 Isocitrate/isopropylmalate dehydrogenase RAM_08620 PF00682 HMGL-like RAM_08620 PF08502 LeuA allosteric (dimerisation) domain RAM_08625 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_08630 PF01494 FAD binding domain RAM_08640 PF00216 Bacterial DNA-binding protein RAM_08645 PF03704 Bacterial transcriptional activator domain RAM_08645 PF00486 Transcriptional regulatory protein, C terminal RAM_08645 PF00931 NB-ARC domain RAM_08690 PF11774 Lsr2 RAM_08700 PF00216 Bacterial DNA-binding protein RAM_08710 PF00149 Calcineurin-like phosphoesterase RAM_08710 PF12320 Type 5 capsule protein repressor C-terminal domain RAM_08715 PF13476 AAA domain RAM_08745 PF01614 Bacterial transcriptional regulator RAM_08745 PF09339 IclR helix-turn-helix domain RAM_08750 PF00330 Aconitase family (aconitate hydratase) RAM_08755 PF00694 Aconitase C-terminal domain RAM_08760 PF00216 Bacterial DNA-binding protein RAM_08765 PF00931 NB-ARC domain RAM_08765 PF03704 Bacterial transcriptional activator domain RAM_08765 PF00486 Transcriptional regulatory protein, C terminal RAM_08770 PF00300 Histidine phosphatase superfamily (branch 1) RAM_08770 PF00293 NUDIX domain RAM_08775 PF13090 Polyphosphate kinase C-terminal domain 2 RAM_08775 PF17941 Polyphosphate kinase C-terminal domain 1 RAM_08775 PF02503 Polyphosphate kinase middle domain RAM_08775 PF13089 Polyphosphate kinase N-terminal domain RAM_08790 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RAM_08790 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RAM_08800 PF00710 Asparaginase, N-terminal RAM_08800 PF17763 Glutaminase/Asparaginase C-terminal domain RAM_08810 PF02424 ApbE family RAM_08820 PF00175 Oxidoreductase NAD-binding domain RAM_08820 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_08825 PF00072 Response regulator receiver domain RAM_08825 PF00486 Transcriptional regulatory protein, C terminal RAM_08830 PF00512 His Kinase A (phospho-acceptor) domain RAM_08830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_08830 PF00672 HAMP domain RAM_08840 PF00392 Bacterial regulatory proteins, gntR family RAM_08845 PF01820 D-ala D-ala ligase N-terminus RAM_08845 PF07478 D-ala D-ala ligase C-terminus RAM_08860 PF02769 AIR synthase related protein, C-terminal domain RAM_08860 PF00586 AIR synthase related protein, N-terminal domain RAM_08870 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_08870 PF16499 Alpha galactosidase A RAM_08875 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_08880 PF03167 Uracil DNA glycosylase superfamily RAM_08890 PF00830 Ribosomal L28 family RAM_08895 PF02734 DAK2 domain RAM_08895 PF13684 Dihydroxyacetone kinase family RAM_08900 PF00271 Helicase conserved C-terminal domain RAM_08900 PF17191 RecG wedge domain RAM_08900 PF00270 DEAD/DEAH box helicase RAM_08915 PF00156 Phosphoribosyl transferase domain RAM_08915 PF05139 Erythromycin esterase RAM_08925 PF05922 Peptidase inhibitor I9 RAM_08925 PF04151 Bacterial pre-peptidase C-terminal domain RAM_08925 PF00082 Subtilase family RAM_08930 PF01609 Transposase DDE domain RAM_08930 PF13808 DDE_Tnp_1-associated RAM_08940 PF02436 Conserved carboxylase domain RAM_08940 PF00682 HMGL-like RAM_08940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_08940 PF00364 Biotin-requiring enzyme RAM_08940 PF00289 Biotin carboxylase, N-terminal domain RAM_08940 PF02785 Biotin carboxylase C-terminal domain RAM_08945 PF00491 Arginase family RAM_09010 PF02470 MlaD protein RAM_09035 PF02405 Permease MlaE RAM_09045 PF00296 Luciferase-like monooxygenase RAM_09050 PF01494 FAD binding domain RAM_09060 PF17871 AAA lid domain RAM_09060 PF02861 Clp amino terminal domain, pathogenicity island component RAM_09060 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_09060 PF00004 ATPase family associated with various cellular activities (AAA) RAM_09060 PF07724 AAA domain (Cdc48 subfamily) RAM_09065 PF12894 Anaphase-promoting complex subunit 4 WD40 domain RAM_09065 PF00400 WD domain, G-beta repeat RAM_09070 PF13538 UvrD-like helicase C-terminal domain RAM_09080 PF01467 Cytidylyltransferase-like RAM_09085 PF00545 ribonuclease RAM_09105 PF02620 Large ribosomal RNA subunit accumulation protein YceD RAM_09110 PF01783 Ribosomal L32p protein family RAM_09115 PF00035 Double-stranded RNA binding motif RAM_09115 PF14622 Ribonuclease-III-like RAM_09120 PF14592 Chondroitinase B RAM_09125 PF06827 Zinc finger found in FPG and IleRS RAM_09125 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_09125 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_09145 PF08450 SMP-30/Gluconolactonase/LRE-like region RAM_09160 PF12697 Alpha/beta hydrolase family RAM_09170 PF00120 Glutamine synthetase, catalytic domain RAM_09175 PF07722 Peptidase C26 RAM_09180 PF00171 Aldehyde dehydrogenase family RAM_09200 PF02347 Glycine cleavage system P-protein RAM_09205 PF01571 Aminomethyltransferase folate-binding domain RAM_09205 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_09210 PF01597 Glycine cleavage H-protein RAM_09215 PF00464 Serine hydroxymethyltransferase RAM_09220 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RAM_09220 PF04055 Radical SAM superfamily RAM_09225 PF03315 Serine dehydratase beta chain RAM_09225 PF03313 Serine dehydratase alpha chain RAM_09245 PF07729 FCD domain RAM_09245 PF00392 Bacterial regulatory proteins, gntR family RAM_09255 PF00912 Transglycosylase RAM_09255 PF00905 Penicillin binding protein transpeptidase domain RAM_09260 PF01596 O-methyltransferase RAM_09265 PF00155 Aminotransferase class I and II RAM_09265 PF00392 Bacterial regulatory proteins, gntR family RAM_09270 PF01494 FAD binding domain RAM_09280 PF00106 short chain dehydrogenase RAM_09290 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_09290 PF14759 Reductase C-terminal RAM_09295 PF13411 MerR HTH family regulatory protein RAM_09295 PF07739 TipAS antibiotic-recognition domain RAM_09305 PF07690 Major Facilitator Superfamily RAM_09310 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_09315 PF13378 Enolase C-terminal domain-like RAM_09315 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_09330 PF00005 ABC transporter RAM_09335 PF02653 Branched-chain amino acid transport system / permease component RAM_09340 PF00392 Bacterial regulatory proteins, gntR family RAM_09340 PF07729 FCD domain RAM_09345 PF00248 Aldo/keto reductase family RAM_09355 PF08281 Sigma-70, region 4 RAM_09355 PF04542 Sigma-70 region 2 RAM_09365 PF02656 Domain of unknown function (DUF202) RAM_09385 PF02595 Glycerate kinase family RAM_09390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_09390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_09395 PF16875 Glycosyl hydrolase family 36 N-terminal domain RAM_09395 PF16874 Glycosyl hydrolase family 36 C-terminal domain RAM_09400 PF00480 ROK family RAM_09405 PF01547 Bacterial extracellular solute-binding protein RAM_09410 PF00528 Binding-protein-dependent transport system inner membrane component RAM_09415 PF00528 Binding-protein-dependent transport system inner membrane component RAM_09420 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_09420 PF16499 Alpha galactosidase A RAM_09425 PF01144 Coenzyme A transferase RAM_09430 PF01144 Coenzyme A transferase RAM_09435 PF02803 Thiolase, C-terminal domain RAM_09435 PF00108 Thiolase, N-terminal domain RAM_09440 PF00775 Dioxygenase RAM_09440 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal RAM_09445 PF00775 Dioxygenase RAM_09450 PF12146 Serine aminopeptidase, S33 RAM_09455 PF02627 Carboxymuconolactone decarboxylase family RAM_09460 PF01614 Bacterial transcriptional regulator RAM_09460 PF09339 IclR helix-turn-helix domain RAM_09465 PF12804 MobA-like NTP transferase domain RAM_09470 PF00004 ATPase family associated with various cellular activities (AAA) RAM_09470 PF02190 ATP-dependent protease La (LON) substrate-binding domain RAM_09470 PF05362 Lon protease (S16) C-terminal proteolytic domain RAM_09490 PF01799 [2Fe-2S] binding domain RAM_09490 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_09495 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_09495 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_09500 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_09500 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_09510 PF08448 PAS fold RAM_09510 PF00990 Diguanylate cyclase, GGDEF domain RAM_09515 PF00743 Flavin-binding monooxygenase-like RAM_09520 PF00248 Aldo/keto reductase family RAM_09530 PF00149 Calcineurin-like phosphoesterase RAM_09545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_09545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_09545 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_09550 PF04962 KduI/IolB family RAM_09560 PF00294 pfkB family carbohydrate kinase RAM_09565 PF00005 ABC transporter RAM_09570 PF02653 Branched-chain amino acid transport system / permease component RAM_09580 PF01261 Xylose isomerase-like TIM barrel RAM_09585 PF00356 Bacterial regulatory proteins, lacI family RAM_09590 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_09590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_09595 PF00733 Asparagine synthase RAM_09595 PF13537 Glutamine amidotransferase domain RAM_09605 PF03814 Potassium-transporting ATPase A subunit RAM_09615 PF02669 K+-transporting ATPase, c chain RAM_09620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_09620 PF02702 Osmosensitive K+ channel His kinase sensor domain RAM_09620 PF13493 Domain of unknown function (DUF4118) RAM_09620 PF00512 His Kinase A (phospho-acceptor) domain RAM_09620 PF00582 Universal stress protein family RAM_09625 PF00072 Response regulator receiver domain RAM_09625 PF00486 Transcriptional regulatory protein, C terminal RAM_09650 PF00708 Acylphosphatase RAM_09655 PF06470 SMC proteins Flexible Hinge Domain RAM_09655 PF02463 RecF/RecN/SMC N terminal domain RAM_09665 PF00474 Sodium:solute symporter family RAM_09670 PF03702 Anhydro-N-acetylmuramic acid kinase RAM_09675 PF02881 SRP54-type protein, helical bundle domain RAM_09675 PF00448 SRP54-type protein, GTPase domain RAM_09690 PF09339 IclR helix-turn-helix domain RAM_09690 PF01614 Bacterial transcriptional regulator RAM_09720 PF00375 Sodium:dicarboxylate symporter family RAM_09730 PF05651 Putative sugar diacid recognition RAM_09730 PF13556 PucR C-terminal helix-turn-helix domain RAM_09730 PF17853 GGDEF-like domain RAM_09735 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_09735 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_09740 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_09740 PF01799 [2Fe-2S] binding domain RAM_09745 PF01979 Amidohydrolase family RAM_09750 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_09750 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_09755 PF16499 Alpha galactosidase A RAM_09755 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_09760 PF00440 Bacterial regulatory proteins, tetR family RAM_09770 PF01014 Uricase RAM_09775 PF00576 HIUase/Transthyretin family RAM_09790 PF01979 Amidohydrolase family RAM_09795 PF03561 Allantoicase repeat RAM_09805 PF13380 CoA binding domain RAM_09810 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_09830 PF04542 Sigma-70 region 2 RAM_09830 PF08281 Sigma-70, region 4 RAM_09830 PF12680 SnoaL-like domain RAM_09845 PF00909 Ammonium Transporter Family RAM_09850 PF00543 Nitrogen regulatory protein P-II RAM_09855 PF01966 HD domain RAM_09855 PF08335 GlnD PII-uridylyltransferase RAM_09860 PF01494 FAD binding domain RAM_09875 PF08448 PAS fold RAM_09875 PF00990 Diguanylate cyclase, GGDEF domain RAM_09885 PF00440 Bacterial regulatory proteins, tetR family RAM_09895 PF02735 Ku70/Ku80 beta-barrel domain RAM_09905 PF00664 ABC transporter transmembrane region RAM_09905 PF00005 ABC transporter RAM_09910 PF02978 Signal peptide binding domain RAM_09910 PF00448 SRP54-type protein, GTPase domain RAM_09910 PF02881 SRP54-type protein, helical bundle domain RAM_09915 PF01979 Amidohydrolase family RAM_09930 PF00886 Ribosomal protein S16 RAM_09940 PF05239 PRC-barrel domain RAM_09940 PF01782 RimM N-terminal domain RAM_09950 PF01746 tRNA (Guanine-1)-methyltransferase RAM_09955 PF01245 Ribosomal protein L19 RAM_09960 PF10502 Signal peptidase, peptidase S26 RAM_09965 PF01351 Ribonuclease HII RAM_09970 PF10611 Protein of unknown function (DUF2469) RAM_09975 PF02021 Uncharacterised protein family UPF0102 RAM_09980 PF01078 Magnesium chelatase, subunit ChlI RAM_09980 PF13335 Magnesium chelatase, subunit ChlI C-terminal RAM_09990 PF02481 DNA recombination-mediator protein A RAM_09990 PF17782 DprA winged helix domain RAM_09995 PF02899 Phage integrase, N-terminal SAM-like domain RAM_09995 PF00589 Phage integrase family RAM_10000 PF04545 Sigma-70, region 4 RAM_10000 PF04539 Sigma-70 region 3 RAM_10000 PF04542 Sigma-70 region 2 RAM_10005 PF01551 Peptidase family M23 RAM_10010 PF00318 Ribosomal protein S2 RAM_10015 PF00889 Elongation factor TS RAM_10020 PF00696 Amino acid kinase family RAM_10025 PF01765 Ribosome recycling factor RAM_10040 PF03551 Transcriptional regulator PadR-like family RAM_10040 PF13847 Methyltransferase domain RAM_10045 PF03551 Transcriptional regulator PadR-like family RAM_10050 PF01032 FecCD transport family RAM_10055 PF01032 FecCD transport family RAM_10060 PF00005 ABC transporter RAM_10065 PF01497 Periplasmic binding protein RAM_10070 PF00456 Transketolase, thiamine diphosphate binding domain RAM_10070 PF02780 Transketolase, C-terminal domain RAM_10070 PF02779 Transketolase, pyrimidine binding domain RAM_10080 PF04055 Radical SAM superfamily RAM_10090 PF05593 RHS Repeat RAM_10105 PF02633 Creatinine amidohydrolase RAM_10110 PF02913 FAD linked oxidases, C-terminal domain RAM_10110 PF01565 FAD binding domain RAM_10125 PF00005 ABC transporter RAM_10130 PF07969 Amidohydrolase family RAM_10145 PF01979 Amidohydrolase family RAM_10180 PF01568 Molydopterin dinucleotide binding domain RAM_10180 PF00384 Molybdopterin oxidoreductase RAM_10190 PF13411 MerR HTH family regulatory protein RAM_10195 PF07690 Major Facilitator Superfamily RAM_10210 PF03795 YCII-related domain RAM_10215 PF05368 NmrA-like family RAM_10225 PF00550 Phosphopantetheine attachment site RAM_10225 PF08659 KR domain RAM_10225 PF14765 Polyketide synthase dehydratase RAM_10225 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_10225 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_10225 PF16197 Ketoacyl-synthetase C-terminal extension RAM_10225 PF08990 Erythronolide synthase docking RAM_10225 PF08240 Alcohol dehydrogenase GroES-like domain RAM_10225 PF00698 Acyl transferase domain RAM_10230 PF01381 Helix-turn-helix RAM_10240 PF03795 YCII-related domain RAM_10245 PF04542 Sigma-70 region 2 RAM_10245 PF08281 Sigma-70, region 4 RAM_10250 PF00378 Enoyl-CoA hydratase/isomerase RAM_10260 PF03960 ArsC family RAM_10265 PF00291 Pyridoxal-phosphate dependent enzyme RAM_10275 PF00795 Carbon-nitrogen hydrolase RAM_10290 PF00067 Cytochrome P450 RAM_10300 PF00931 NB-ARC domain RAM_10300 PF03704 Bacterial transcriptional activator domain RAM_10300 PF00486 Transcriptional regulatory protein, C terminal RAM_10310 PF13847 Methyltransferase domain RAM_10315 PF00392 Bacterial regulatory proteins, gntR family RAM_10315 PF00155 Aminotransferase class I and II RAM_10325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_10335 PF13288 DXP reductoisomerase C-terminal domain RAM_10335 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RAM_10335 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RAM_10340 PF17820 PDZ domain RAM_10340 PF02163 Peptidase family M50 RAM_10345 PF04551 GcpE protein RAM_10375 PF00583 Acetyltransferase (GNAT) family RAM_10380 PF00905 Penicillin binding protein transpeptidase domain RAM_10385 PF00557 Metallopeptidase family M24 RAM_10390 PF01061 ABC-2 type transporter RAM_10395 PF13732 Domain of unknown function (DUF4162) RAM_10395 PF00005 ABC transporter RAM_10410 PF07729 FCD domain RAM_10410 PF00392 Bacterial regulatory proteins, gntR family RAM_10420 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_10420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_10435 PF00089 Trypsin RAM_10440 PF13673 Acetyltransferase (GNAT) domain RAM_10445 PF00155 Aminotransferase class I and II RAM_10450 PF00270 DEAD/DEAH box helicase RAM_10450 PF00271 Helicase conserved C-terminal domain RAM_10490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_10490 PF03466 LysR substrate binding domain RAM_10500 PF01266 FAD dependent oxidoreductase RAM_10505 PF03883 Peroxide stress protein YaaA RAM_10530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_10535 PF09594 Glycosyltransferase family 87 RAM_10545 PF04073 Aminoacyl-tRNA editing domain RAM_10545 PF03129 Anticodon binding domain RAM_10545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_10560 PF09924 Uncharacterised conserved protein (DUF2156) RAM_10590 PF01894 Uncharacterised protein family UPF0047 RAM_10595 PF00072 Response regulator receiver domain RAM_10595 PF00196 Bacterial regulatory proteins, luxR family RAM_10610 PF00487 Fatty acid desaturase RAM_10615 PF00042 Globin RAM_10615 PF00175 Oxidoreductase NAD-binding domain RAM_10615 PF00970 Oxidoreductase FAD-binding domain RAM_10620 PF00440 Bacterial regulatory proteins, tetR family RAM_10625 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RAM_10625 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RAM_10630 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RAM_10635 PF02233 NAD(P) transhydrogenase beta subunit RAM_10650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_10650 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_10650 PF00403 Heavy-metal-associated domain RAM_10670 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_10670 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_10675 PF00550 Phosphopantetheine attachment site RAM_10680 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_10680 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_10685 PF00698 Acyl transferase domain RAM_10695 PF17853 GGDEF-like domain RAM_10695 PF13556 PucR C-terminal helix-turn-helix domain RAM_10700 PF13732 Domain of unknown function (DUF4162) RAM_10700 PF00005 ABC transporter RAM_10715 PF04973 Nicotinamide mononucleotide transporter RAM_10720 PF02652 L-lactate permease RAM_10735 PF01070 FMN-dependent dehydrogenase RAM_10740 PF17831 Pyruvate dehydrogenase E1 component middle domain RAM_10740 PF00456 Transketolase, thiamine diphosphate binding domain RAM_10745 PF11253 Protein of unknown function (DUF3052) RAM_10750 PF00578 AhpC/TSA family RAM_10755 PF02796 Helix-turn-helix domain of resolvase RAM_10755 PF00239 Resolvase, N terminal domain RAM_10770 PF01555 DNA methylase RAM_10860 PF12697 Alpha/beta hydrolase family RAM_10870 PF00899 ThiF family RAM_10900 PF07690 Major Facilitator Superfamily RAM_10920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_10920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_10920 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_10925 PF00106 short chain dehydrogenase RAM_10930 PF00266 Aminotransferase class-V RAM_10935 PF00392 Bacterial regulatory proteins, gntR family RAM_10935 PF07729 FCD domain RAM_10940 PF00149 Calcineurin-like phosphoesterase RAM_10950 PF00206 Lyase RAM_10950 PF10415 Fumarase C C-terminus RAM_10960 PF00324 Amino acid permease RAM_10965 PF07729 FCD domain RAM_10965 PF00392 Bacterial regulatory proteins, gntR family RAM_10970 PF01336 OB-fold nucleic acid binding domain RAM_10970 PF02811 PHP domain RAM_10970 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RAM_10970 PF14579 Helix-hairpin-helix motif RAM_10970 PF07733 Bacterial DNA polymerase III alpha NTPase domain RAM_10975 PF07690 Major Facilitator Superfamily RAM_10985 PF17964 Bacterial Ig domain RAM_10985 PF03734 L,D-transpeptidase catalytic domain RAM_10995 PF09335 SNARE associated Golgi protein RAM_11000 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RAM_11000 PF04055 Radical SAM superfamily RAM_11005 PF00106 short chain dehydrogenase RAM_11015 PF00440 Bacterial regulatory proteins, tetR family RAM_11025 PF03099 Biotin/lipoate A/B protein ligase family RAM_11035 PF01370 NAD dependent epimerase/dehydratase family RAM_11035 PF08338 Domain of unknown function (DUF1731) RAM_11045 PF00364 Biotin-requiring enzyme RAM_11045 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAM_11045 PF02817 e3 binding domain RAM_11050 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_11050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_11080 PF02789 Cytosol aminopeptidase family, N-terminal domain RAM_11080 PF00883 Cytosol aminopeptidase family, catalytic domain RAM_11100 PF01063 Amino-transferase class IV RAM_11105 PF02277 Phosphoribosyltransferase RAM_11110 PF02542 YgbB family RAM_11110 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RAM_11125 PF01259 SAICAR synthetase RAM_11130 PF00248 Aldo/keto reductase family RAM_11140 PF11241 Protein of unknown function (DUF3043) RAM_11145 PF01521 Iron-sulphur cluster biosynthesis RAM_11155 PF00294 pfkB family carbohydrate kinase RAM_11165 PF13537 Glutamine amidotransferase domain RAM_11165 PF00733 Asparagine synthase RAM_11170 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RAM_11175 PF12270 Cytochrome c oxidase subunit IV RAM_11180 PF01965 DJ-1/PfpI family RAM_11180 PF12833 Helix-turn-helix domain RAM_11190 PF02885 Glycosyl transferase family, helical bundle domain RAM_11190 PF00591 Glycosyl transferase family, a/b domain RAM_11205 PF00510 Cytochrome c oxidase subunit III RAM_11210 PF00034 Cytochrome c RAM_11210 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RAM_11215 PF00355 Rieske [2Fe-2S] domain RAM_11220 PF13631 Cytochrome b(N-terminal)/b6/petB RAM_11235 PF00929 Exonuclease RAM_11235 PF01541 GIY-YIG catalytic domain RAM_11250 PF00877 NlpC/P60 family RAM_11255 PF00534 Glycosyl transferases group 1 RAM_11255 PF13439 Glycosyltransferase Family 4 RAM_11270 PF00067 Cytochrome P450 RAM_11275 PF00202 Aminotransferase class-III RAM_11280 PF01740 STAS domain RAM_11280 PF00916 Sulfate permease family RAM_11285 PF00916 Sulfate permease family RAM_11285 PF01740 STAS domain RAM_11295 PF06968 Biotin and Thiamin Synthesis associated domain RAM_11295 PF04055 Radical SAM superfamily RAM_11310 PF01435 Peptidase family M48 RAM_11315 PF02190 ATP-dependent protease La (LON) substrate-binding domain RAM_11315 PF05362 Lon protease (S16) C-terminal proteolytic domain RAM_11315 PF00004 ATPase family associated with various cellular activities (AAA) RAM_11325 PF02445 Quinolinate synthetase A protein RAM_11330 PF00890 FAD binding domain RAM_11330 PF02910 Fumarate reductase flavoprotein C-term RAM_11335 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RAM_11335 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RAM_11340 PF00082 Subtilase family RAM_11380 PF00501 AMP-binding enzyme RAM_11380 PF13193 AMP-binding enzyme C-terminal domain RAM_11400 PF01580 FtsK/SpoIIIE family RAM_11425 PF02575 YbaB/EbfC DNA-binding family RAM_11435 PF17189 Glycosyl hydrolase family 30 beta sandwich domain RAM_11445 PF05108 Type VII secretion system ESX-1, transport TM domain B RAM_11450 PF00072 Response regulator receiver domain RAM_11450 PF00196 Bacterial regulatory proteins, luxR family RAM_11455 PF00196 Bacterial regulatory proteins, luxR family RAM_11455 PF00072 Response regulator receiver domain RAM_11460 PF00795 Carbon-nitrogen hydrolase RAM_11465 PF00815 Histidinol dehydrogenase RAM_11470 PF00155 Aminotransferase class I and II RAM_11475 PF00475 Imidazoleglycerol-phosphate dehydratase RAM_11480 PF12706 Beta-lactamase superfamily domain RAM_11495 PF00561 alpha/beta hydrolase fold RAM_11500 PF03176 MMPL family RAM_11505 PF00440 Bacterial regulatory proteins, tetR family RAM_11505 PF08361 MAATS-type transcriptional repressor, C-terminal region RAM_11510 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family RAM_11515 PF00376 MerR family regulatory protein RAM_11515 PF09278 MerR, DNA binding RAM_11520 PF00456 Transketolase, thiamine diphosphate binding domain RAM_11525 PF02779 Transketolase, pyrimidine binding domain RAM_11530 PF00293 NUDIX domain RAM_11540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_11540 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_11540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_11555 PF00117 Glutamine amidotransferase class-I RAM_11560 PF00977 Histidine biosynthesis protein RAM_11610 PF04542 Sigma-70 region 2 RAM_11610 PF04545 Sigma-70, region 4 RAM_11610 PF04539 Sigma-70 region 3 RAM_11615 PF02333 Phytase RAM_11620 PF00977 Histidine biosynthesis protein RAM_11630 PF01502 Phosphoribosyl-AMP cyclohydrolase RAM_11665 PF00425 chorismate binding enzyme RAM_11665 PF04715 Anthranilate synthase component I, N terminal region RAM_11675 PF00218 Indole-3-glycerol phosphate synthase RAM_11680 PF00291 Pyridoxal-phosphate dependent enzyme RAM_11685 PF00290 Tryptophan synthase alpha chain RAM_11690 PF13411 MerR HTH family regulatory protein RAM_11710 PF00120 Glutamine synthetase, catalytic domain RAM_11710 PF03951 Glutamine synthetase, beta-Grasp domain RAM_11725 PF01546 Peptidase family M20/M25/M40 RAM_11725 PF07687 Peptidase dimerisation domain RAM_11730 PF01790 Prolipoprotein diacylglyceryl transferase RAM_11740 PF01493 GXGXG motif RAM_11740 PF04898 Glutamate synthase central domain RAM_11740 PF00310 Glutamine amidotransferases class-II RAM_11740 PF01645 Conserved region in glutamate synthase RAM_11745 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_11745 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RAM_11760 PF00561 alpha/beta hydrolase fold RAM_11765 PF01474 Class-II DAHP synthetase family RAM_11780 PF06974 Protein of unknown function (DUF1298) RAM_11780 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RAM_11790 PF15975 Flotillin RAM_11790 PF01145 SPFH domain / Band 7 family RAM_11800 PF00069 Protein kinase domain RAM_11800 PF03793 PASTA domain RAM_11815 PF00296 Luciferase-like monooxygenase RAM_11825 PF01593 Flavin containing amine oxidoreductase RAM_11840 PF02219 Methylenetetrahydrofolate reductase RAM_11885 PF01327 Polypeptide deformylase RAM_11890 PF08494 DEAD/H associated RAM_11890 PF00271 Helicase conserved C-terminal domain RAM_11890 PF00270 DEAD/DEAH box helicase RAM_11895 PF00455 DeoR C terminal sensor domain RAM_11895 PF08220 DeoR-like helix-turn-helix domain RAM_11900 PF07690 Major Facilitator Superfamily RAM_11905 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RAM_11920 PF00154 recA bacterial DNA recombination protein RAM_11925 PF02631 RecX family RAM_11945 PF01081 KDPG and KHG aldolase RAM_11950 PF00920 Dehydratase family RAM_11965 PF02910 Fumarate reductase flavoprotein C-term RAM_11965 PF00890 FAD binding domain RAM_11970 PF13085 2Fe-2S iron-sulfur cluster binding domain RAM_11970 PF13183 4Fe-4S dicluster domain RAM_12005 PF00528 Binding-protein-dependent transport system inner membrane component RAM_12010 PF00528 Binding-protein-dependent transport system inner membrane component RAM_12015 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_12020 PF00005 ABC transporter RAM_12025 PF00072 Response regulator receiver domain RAM_12025 PF00486 Transcriptional regulatory protein, C terminal RAM_12030 PF00512 His Kinase A (phospho-acceptor) domain RAM_12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_12030 PF00672 HAMP domain RAM_12040 PF01638 HxlR-like helix-turn-helix RAM_12060 PF03372 Endonuclease/Exonuclease/phosphatase family RAM_12090 PF01494 FAD binding domain RAM_12095 PF00440 Bacterial regulatory proteins, tetR family RAM_12095 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_12100 PF01494 FAD binding domain RAM_12105 PF04055 Radical SAM superfamily RAM_12105 PF00919 Uncharacterized protein family UPF0004 RAM_12110 PF04055 Radical SAM superfamily RAM_12110 PF00919 Uncharacterized protein family UPF0004 RAM_12125 PF03993 Domain of Unknown Function (DUF349) RAM_12135 PF01678 Diaminopimelate epimerase RAM_12140 PF00133 tRNA synthetases class I (I, L, M and V) RAM_12140 PF08264 Anticodon-binding domain of tRNA RAM_12155 PF16360 GTP-binding GTPase Middle Region RAM_12155 PF01926 50S ribosome-binding GTPase RAM_12155 PF13167 GTP-binding GTPase N-terminal RAM_12165 PF00717 Peptidase S24-like RAM_12165 PF01726 LexA DNA binding domain RAM_12175 PF03477 ATP cone domain RAM_12180 PF02867 Ribonucleotide reductase, barrel domain RAM_12180 PF08471 Class II vitamin B12-dependent ribonucleotide reductase RAM_12200 PF02525 Flavodoxin-like fold RAM_12210 PF00326 Prolyl oligopeptidase family RAM_12210 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RAM_12225 PF00392 Bacterial regulatory proteins, gntR family RAM_12225 PF00155 Aminotransferase class I and II RAM_12245 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_12245 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_12250 PF02698 DUF218 domain RAM_12255 PF08031 Berberine and berberine like RAM_12255 PF01565 FAD binding domain RAM_12260 PF00072 Response regulator receiver domain RAM_12260 PF00196 Bacterial regulatory proteins, luxR family RAM_12265 PF07730 Histidine kinase RAM_12280 PF01370 NAD dependent epimerase/dehydratase family RAM_12285 PF00288 GHMP kinases N terminal domain RAM_12285 PF10509 Galactokinase galactose-binding signature RAM_12285 PF08544 GHMP kinases C terminal RAM_12290 PF18357 Diphteria toxin repressor SH3 domain RAM_12290 PF02742 Iron dependent repressor, metal binding and dimerisation domain RAM_12290 PF01325 Iron dependent repressor, N-terminal DNA binding domain RAM_12295 PF00581 Rhodanese-like domain RAM_12300 PF00850 Histone deacetylase domain RAM_12310 PF00144 Beta-lactamase RAM_12315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_12320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12320 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_12320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_12340 PF02405 Permease MlaE RAM_12345 PF02405 Permease MlaE RAM_12395 PF12897 Alanine-glyoxylate amino-transferase RAM_12405 PF01494 FAD binding domain RAM_12410 PF00356 Bacterial regulatory proteins, lacI family RAM_12420 PF00528 Binding-protein-dependent transport system inner membrane component RAM_12425 PF00528 Binding-protein-dependent transport system inner membrane component RAM_12430 PF00232 Glycosyl hydrolase family 1 RAM_12435 PF00501 AMP-binding enzyme RAM_12455 PF17886 HSP20-like domain found in ArsA RAM_12455 PF02374 Anion-transporting ATPase RAM_12465 PF00480 ROK family RAM_12480 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_12490 PF12146 Serine aminopeptidase, S33 RAM_12495 PF01553 Acyltransferase RAM_12500 PF16473 3' exoribonuclease, RNase T-like RAM_12505 PF00793 DAHP synthetase I family RAM_12510 PF00365 Phosphofructokinase RAM_12520 PF08281 Sigma-70, region 4 RAM_12520 PF04542 Sigma-70 region 2 RAM_12525 PF00221 Aromatic amino acid lyase RAM_12535 PF01638 HxlR-like helix-turn-helix RAM_12540 PF01022 Bacterial regulatory protein, arsR family RAM_12545 PF00041 Fibronectin type III domain RAM_12545 PF00553 Cellulose binding domain RAM_12545 PF00704 Glycosyl hydrolases family 18 RAM_12555 PF02887 Pyruvate kinase, alpha/beta domain RAM_12555 PF00224 Pyruvate kinase, barrel domain RAM_12580 PF00196 Bacterial regulatory proteins, luxR family RAM_12580 PF00072 Response regulator receiver domain RAM_12585 PF00171 Aldehyde dehydrogenase family RAM_12595 PF00440 Bacterial regulatory proteins, tetR family RAM_12600 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_12600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_12600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12605 PF02515 CoA-transferase family III RAM_12615 PF00378 Enoyl-CoA hydratase/isomerase RAM_12645 PF07690 Major Facilitator Superfamily RAM_12650 PF00440 Bacterial regulatory proteins, tetR family RAM_12655 PF00474 Sodium:solute symporter family RAM_12670 PF03259 Roadblock/LC7 domain RAM_12700 PF01642 Methylmalonyl-CoA mutase RAM_12700 PF02310 B12 binding domain RAM_12705 PF13847 Methyltransferase domain RAM_12710 PF00296 Luciferase-like monooxygenase RAM_12715 PF17925 Tetracyclin repressor-like, C-terminal domain RAM_12715 PF00440 Bacterial regulatory proteins, tetR family RAM_12720 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_12720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_12720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12725 PF12419 SNF2 Helicase protein RAM_12725 PF00271 Helicase conserved C-terminal domain RAM_12725 PF00176 SNF2 family N-terminal domain RAM_12740 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RAM_12740 PF06974 Protein of unknown function (DUF1298) RAM_12745 PF04075 F420H(2)-dependent quinone reductase RAM_12750 PF00561 alpha/beta hydrolase fold RAM_12755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_12760 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_12760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_12760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12765 PF13452 N-terminal half of MaoC dehydratase RAM_12785 PF06574 FAD synthetase RAM_12785 PF01687 Riboflavin kinase RAM_12795 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_12795 PF00175 Oxidoreductase NAD-binding domain RAM_12795 PF00970 Oxidoreductase FAD-binding domain RAM_12805 PF00355 Rieske [2Fe-2S] domain RAM_12815 PF00890 FAD binding domain RAM_12820 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_12820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12825 PF12697 Alpha/beta hydrolase family RAM_12830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_12835 PF01613 Flavin reductase like domain RAM_12850 PF12706 Beta-lactamase superfamily domain RAM_12855 PF00487 Fatty acid desaturase RAM_12860 PF17755 UvrA DNA-binding domain RAM_12860 PF00005 ABC transporter RAM_12860 PF17760 UvrA interaction domain RAM_12880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_12880 PF03466 LysR substrate binding domain RAM_12885 PF07690 Major Facilitator Superfamily RAM_12890 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_12890 PF14759 Reductase C-terminal RAM_12915 PF04542 Sigma-70 region 2 RAM_12915 PF04545 Sigma-70, region 4 RAM_12950 PF01979 Amidohydrolase family RAM_12955 PF00561 alpha/beta hydrolase fold RAM_12960 PF02803 Thiolase, C-terminal domain RAM_12960 PF00108 Thiolase, N-terminal domain RAM_12965 PF00067 Cytochrome P450 RAM_12980 PF03631 Virulence factor BrkB RAM_13000 PF00378 Enoyl-CoA hydratase/isomerase RAM_13005 PF13193 AMP-binding enzyme C-terminal domain RAM_13005 PF00501 AMP-binding enzyme RAM_13010 PF03060 Nitronate monooxygenase RAM_13015 PF00089 Trypsin RAM_13020 PF13520 Amino acid permease RAM_13025 PF00392 Bacterial regulatory proteins, gntR family RAM_13025 PF07702 UTRA domain RAM_13045 PF05681 Fumarate hydratase (Fumerase) RAM_13045 PF05683 Fumarase C-terminus RAM_13050 PF00140 Sigma-70 factor, region 1.2 RAM_13050 PF04539 Sigma-70 region 3 RAM_13050 PF04542 Sigma-70 region 2 RAM_13050 PF04545 Sigma-70, region 4 RAM_13055 PF02580 D-Tyr-tRNA(Tyr) deacylase RAM_13060 PF05175 Methyltransferase small domain RAM_13060 PF17827 PrmC N-terminal domain RAM_13065 PF07687 Peptidase dimerisation domain RAM_13065 PF01546 Peptidase family M20/M25/M40 RAM_13075 PF00294 pfkB family carbohydrate kinase RAM_13080 PF04227 Indigoidine synthase A like protein RAM_13105 PF00873 AcrB/AcrD/AcrF family RAM_13115 PF04851 Type III restriction enzyme, res subunit RAM_13120 PF13407 Periplasmic binding protein domain RAM_13125 PF00005 ABC transporter RAM_13130 PF02653 Branched-chain amino acid transport system / permease component RAM_13150 PF03951 Glutamine synthetase, beta-Grasp domain RAM_13150 PF00120 Glutamine synthetase, catalytic domain RAM_13160 PF13520 Amino acid permease RAM_13165 PF02446 4-alpha-glucanotransferase RAM_13170 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_13170 PF00128 Alpha amylase, catalytic domain RAM_13175 PF00128 Alpha amylase, catalytic domain RAM_13180 PF00128 Alpha amylase, catalytic domain RAM_13180 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_13185 PF00128 Alpha amylase, catalytic domain RAM_13185 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_13190 PF00128 Alpha amylase, catalytic domain RAM_13190 PF11896 Domain of unknown function (DUF3416) RAM_13195 PF00128 Alpha amylase, catalytic domain RAM_13195 PF16657 Maltogenic Amylase, C-terminal domain RAM_13200 PF18085 Maltokinase N-terminal cap domain RAM_13205 PF00128 Alpha amylase, catalytic domain RAM_13205 PF02806 Alpha amylase, C-terminal all-beta domain RAM_13205 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_13215 PF04545 Sigma-70, region 4 RAM_13215 PF04539 Sigma-70 region 3 RAM_13215 PF00140 Sigma-70 factor, region 1.2 RAM_13215 PF04542 Sigma-70 region 2 RAM_13220 PF00480 ROK family RAM_13225 PF00459 Inositol monophosphatase family RAM_13245 PF00692 dUTPase RAM_13270 PF02080 TrkA-C domain RAM_13270 PF02254 TrkA-N domain RAM_13275 PF02254 TrkA-N domain RAM_13275 PF02080 TrkA-C domain RAM_13280 PF13520 Amino acid permease RAM_13285 PF05958 tRNA (Uracil-5-)-methyltransferase RAM_13285 PF01938 TRAM domain RAM_13300 PF02779 Transketolase, pyrimidine binding domain RAM_13300 PF02780 Transketolase, C-terminal domain RAM_13300 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RAM_13305 PF00356 Bacterial regulatory proteins, lacI family RAM_13315 PF00171 Aldehyde dehydrogenase family RAM_13320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_13320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_13320 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_13325 PF00491 Arginase family RAM_13335 PF13556 PucR C-terminal helix-turn-helix domain RAM_13340 PF00072 Response regulator receiver domain RAM_13340 PF00486 Transcriptional regulatory protein, C terminal RAM_13345 PF00512 His Kinase A (phospho-acceptor) domain RAM_13345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_13345 PF00672 HAMP domain RAM_13350 PF07859 alpha/beta hydrolase fold RAM_13365 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_13365 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_13365 PF00378 Enoyl-CoA hydratase/isomerase RAM_13370 PF02803 Thiolase, C-terminal domain RAM_13370 PF00108 Thiolase, N-terminal domain RAM_13385 PF01425 Amidase RAM_13390 PF00289 Biotin carboxylase, N-terminal domain RAM_13390 PF00364 Biotin-requiring enzyme RAM_13390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_13390 PF02785 Biotin carboxylase C-terminal domain RAM_13395 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_13395 PF00289 Biotin carboxylase, N-terminal domain RAM_13395 PF02785 Biotin carboxylase C-terminal domain RAM_13410 PF13520 Amino acid permease RAM_13415 PF00440 Bacterial regulatory proteins, tetR family RAM_13425 PF00196 Bacterial regulatory proteins, luxR family RAM_13425 PF00072 Response regulator receiver domain RAM_13435 PF01208 Uroporphyrinogen decarboxylase (URO-D) RAM_13450 PF02515 CoA-transferase family III RAM_13460 PF05114 Protein of unknown function (DUF692) RAM_13475 PF01641 SelR domain RAM_13485 PF03793 PASTA domain RAM_13485 PF00069 Protein kinase domain RAM_13490 PF09335 SNARE associated Golgi protein RAM_13495 PF01068 ATP dependent DNA ligase domain RAM_13495 PF13298 DNA polymerase Ligase (LigD) RAM_13495 PF04679 ATP dependent DNA ligase C terminal region RAM_13505 PF00296 Luciferase-like monooxygenase RAM_13510 PF00575 S1 RNA binding domain RAM_13520 PF13556 PucR C-terminal helix-turn-helix domain RAM_13520 PF17853 GGDEF-like domain RAM_13520 PF06018 CodY GAF-like domain RAM_13525 PF00171 Aldehyde dehydrogenase family RAM_13540 PF00085 Thioredoxin RAM_13545 PF10944 Protein of unknown function (DUF2630) RAM_13550 PF03795 YCII-related domain RAM_13560 PF04542 Sigma-70 region 2 RAM_13560 PF08281 Sigma-70, region 4 RAM_13570 PF01068 ATP dependent DNA ligase domain RAM_13570 PF04679 ATP dependent DNA ligase C terminal region RAM_13595 PF03780 Asp23 family, cell envelope-related function RAM_13605 PF08281 Sigma-70, region 4 RAM_13605 PF04542 Sigma-70 region 2 RAM_13625 PF01266 FAD dependent oxidoreductase RAM_13630 PF08533 Beta-galactosidase C-terminal domain RAM_13630 PF08532 Beta-galactosidase trimerisation domain RAM_13630 PF02449 Beta-galactosidase RAM_13640 PF00202 Aminotransferase class-III RAM_13645 PF01022 Bacterial regulatory protein, arsR family RAM_13655 PF03976 Polyphosphate kinase 2 (PPK2) RAM_13660 PF00326 Prolyl oligopeptidase family RAM_13660 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region RAM_13670 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RAM_13675 PF02641 Uncharacterized ACR, COG1993 RAM_13680 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RAM_13685 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_13690 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RAM_13695 PF04183 IucA / IucC family RAM_13695 PF06276 Ferric iron reductase FhuF-like transporter RAM_13700 PF00120 Glutamine synthetase, catalytic domain RAM_13705 PF01565 FAD binding domain RAM_13705 PF08031 Berberine and berberine like RAM_13710 PF13191 AAA ATPase domain RAM_13710 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_13715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_13715 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_13725 PF04055 Radical SAM superfamily RAM_13725 PF04055 Radical SAM superfamily RAM_13735 PF01336 OB-fold nucleic acid binding domain RAM_13735 PF02938 GAD domain RAM_13735 PF00152 tRNA synthetases class II (D, K and N) RAM_13760 PF00067 Cytochrome P450 RAM_13765 PF00440 Bacterial regulatory proteins, tetR family RAM_13770 PF00004 ATPase family associated with various cellular activities (AAA) RAM_13770 PF16193 AAA C-terminal domain RAM_13770 PF12002 MgsA AAA+ ATPase C terminal RAM_13780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_13780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_13795 PF02272 DHHA1 domain RAM_13795 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RAM_13795 PF01411 tRNA synthetases class II (A) RAM_13800 PF03652 Holliday junction resolvase RAM_13805 PF02618 YceG-like family RAM_13810 PF08501 Shikimate dehydrogenase substrate binding domain RAM_13810 PF01488 Shikimate / quinate 5-dehydrogenase RAM_13810 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RAM_13815 PF04229 GrpB protein RAM_13820 PF16295 Tetracyclin repressor-like, C-terminal domain RAM_13820 PF00440 Bacterial regulatory proteins, tetR family RAM_13830 PF13026 Protein of unknown function (DUF3887) RAM_13830 PF12146 Serine aminopeptidase, S33 RAM_13840 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_13840 PF01842 ACT domain RAM_13840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_13850 PF00381 PTS HPr component phosphorylation site RAM_13855 PF02378 Phosphotransferase system, EIIC RAM_13855 PF00367 phosphotransferase system, EIIB RAM_13865 PF00367 phosphotransferase system, EIIB RAM_13865 PF02378 Phosphotransferase system, EIIC RAM_13870 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RAM_13870 PF00367 phosphotransferase system, EIIB RAM_13870 PF02378 Phosphotransferase system, EIIC RAM_13885 PF04545 Sigma-70, region 4 RAM_13885 PF04542 Sigma-70 region 2 RAM_13895 PF01264 Chorismate synthase RAM_13900 PF01202 Shikimate kinase RAM_13905 PF01761 3-dehydroquinate synthase RAM_13910 PF01220 Dehydroquinase class II RAM_13930 PF01321 Creatinase/Prolidase N-terminal domain RAM_13930 PF00557 Metallopeptidase family M24 RAM_13935 PF01132 Elongation factor P (EF-P) OB domain RAM_13935 PF08207 Elongation factor P (EF-P) KOW-like domain RAM_13935 PF09285 Elongation factor P, C-terminal RAM_13940 PF01029 NusB family RAM_13955 PF00156 Phosphoribosyl transferase domain RAM_13960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RAM_13960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RAM_13965 PF01979 Amidohydrolase family RAM_13975 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RAM_13975 PF00117 Glutamine amidotransferase class-I RAM_13980 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system RAM_13990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_13990 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RAM_13990 PF02142 MGS-like domain RAM_13995 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RAM_14005 PF00625 Guanylate kinase RAM_14010 PF01192 RNA polymerase Rpb6 RAM_14015 PF02441 Flavoprotein RAM_14015 PF04127 DNA / pantothenate metabolism flavoprotein RAM_14020 PF00438 S-adenosylmethionine synthetase, N-terminal domain RAM_14020 PF02772 S-adenosylmethionine synthetase, central domain RAM_14020 PF02773 S-adenosylmethionine synthetase, C-terminal domain RAM_14025 PF17764 3′ DNA-binding domain (3′BD) RAM_14050 PF02911 Formyl transferase, C-terminal domain RAM_14050 PF00551 Formyl transferase RAM_14055 PF01189 16S rRNA methyltransferase RsmB/F RAM_14055 PF01029 NusB family RAM_14060 PF02441 Flavoprotein RAM_14060 PF04127 DNA / pantothenate metabolism flavoprotein RAM_14065 PF00144 Beta-lactamase RAM_14070 PF00245 Alkaline phosphatase RAM_14075 PF00072 Response regulator receiver domain RAM_14075 PF00196 Bacterial regulatory proteins, luxR family RAM_14080 PF07730 Histidine kinase RAM_14085 PF00834 Ribulose-phosphate 3 epimerase family RAM_14090 PF00677 Lumazine binding domain RAM_14095 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RAM_14095 PF00925 GTP cyclohydrolase II RAM_14100 PF00885 6,7-dimethyl-8-ribityllumazine synthase RAM_14105 PF10756 Bacterial PH domain RAM_14120 PF08459 UvrC Helix-hairpin-helix N-terminal RAM_14120 PF01541 GIY-YIG catalytic domain RAM_14120 PF02151 UvrB/uvrC motif RAM_14125 PF03668 P-loop ATPase protein family RAM_14130 PF01933 Uncharacterised protein family UPF0052 RAM_14135 PF02650 WhiA C-terminal HTH domain RAM_14135 PF14527 WhiA LAGLIDADG-like domain RAM_14135 PF10298 WhiA N-terminal LAGLIDADG-like domain RAM_14140 PF00535 Glycosyl transferase family 2 RAM_14145 PF04116 Fatty acid hydroxylase superfamily RAM_14165 PF00703 Glycosyl hydrolases family 2 RAM_14165 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain RAM_14165 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_14165 PF16990 Carbohydrate binding module (family 35) RAM_14170 PF01218 Coproporphyrinogen III oxidase RAM_14210 PF01810 LysE type translocator RAM_14220 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RAM_14220 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RAM_14225 PF00162 Phosphoglycerate kinase RAM_14230 PF00121 Triosephosphate isomerase RAM_14235 PF03840 Preprotein translocase SecG subunit RAM_14245 PF17200 Single Cache domain 2 RAM_14245 PF07730 Histidine kinase RAM_14250 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RAM_14260 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RAM_14260 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RAM_14265 PF00342 Phosphoglucose isomerase RAM_14270 PF00923 Transaldolase/Fructose-6-phosphate aldolase RAM_14275 PF02780 Transketolase, C-terminal domain RAM_14275 PF02779 Transketolase, pyrimidine binding domain RAM_14275 PF00456 Transketolase, thiamine diphosphate binding domain RAM_14280 PF01040 UbiA prenyltransferase family RAM_14315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RAM_14320 PF00107 Zinc-binding dehydrogenase RAM_14320 PF08240 Alcohol dehydrogenase GroES-like domain RAM_14365 PF13732 Domain of unknown function (DUF4162) RAM_14365 PF00005 ABC transporter RAM_14380 PF01458 Uncharacterized protein family (UPF0051) RAM_14385 PF01458 Uncharacterized protein family (UPF0051) RAM_14390 PF00005 ABC transporter RAM_14395 PF00266 Aminotransferase class-V RAM_14400 PF01592 NifU-like N terminal domain RAM_14405 PF01883 Iron-sulfur cluster assembly protein RAM_14415 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RAM_14425 PF03109 ABC1 family RAM_14430 PF02031 Streptomyces extracellular neutral proteinase (M7) family RAM_14435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_14435 PF07730 Histidine kinase RAM_14440 PF00072 Response regulator receiver domain RAM_14440 PF00196 Bacterial regulatory proteins, luxR family RAM_14445 PF01209 ubiE/COQ5 methyltransferase family RAM_14455 PF00009 Elongation factor Tu GTP binding domain RAM_14460 PF01507 Phosphoadenosine phosphosulfate reductase family RAM_14475 PF00106 short chain dehydrogenase RAM_14480 PF13181 Tetratricopeptide repeat RAM_14510 PF03707 Bacterial signalling protein N terminal repeat RAM_14510 PF00563 EAL domain RAM_14510 PF00990 Diguanylate cyclase, GGDEF domain RAM_14530 PF01966 HD domain RAM_14530 PF13286 Phosphohydrolase-associated domain RAM_14560 PF00296 Luciferase-like monooxygenase RAM_14570 PF00664 ABC transporter transmembrane region RAM_14570 PF00005 ABC transporter RAM_14580 PF13580 SIS domain RAM_14595 PF03816 Cell envelope-related transcriptional attenuator domain RAM_14600 PF13302 Acetyltransferase (GNAT) domain RAM_14605 PF00578 AhpC/TSA family RAM_14610 PF03707 Bacterial signalling protein N terminal repeat RAM_14610 PF00990 Diguanylate cyclase, GGDEF domain RAM_14610 PF00563 EAL domain RAM_14615 PF00067 Cytochrome P450 RAM_14625 PF00293 NUDIX domain RAM_14630 PF00268 Ribonucleotide reductase, small chain RAM_14635 PF02867 Ribonucleotide reductase, barrel domain RAM_14635 PF03477 ATP cone domain RAM_14635 PF00317 Ribonucleotide reductase, all-alpha domain RAM_14645 PF00378 Enoyl-CoA hydratase/isomerase RAM_14660 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_14660 PF08608 Wyosine base formation RAM_14670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_14670 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_14670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_14675 PF01039 Carboxyl transferase domain RAM_14680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_14680 PF00364 Biotin-requiring enzyme RAM_14680 PF00289 Biotin carboxylase, N-terminal domain RAM_14680 PF02785 Biotin carboxylase C-terminal domain RAM_14685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_14685 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_14685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_14705 PF03023 Lipid II flippase MurJ RAM_14720 PF00990 Diguanylate cyclase, GGDEF domain RAM_14720 PF17151 Periplasmic sensor domain RAM_14730 PF03171 2OG-Fe(II) oxygenase superfamily RAM_14730 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RAM_14750 PF00440 Bacterial regulatory proteins, tetR family RAM_14755 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_14755 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_14760 PF00440 Bacterial regulatory proteins, tetR family RAM_14765 PF00652 Ricin-type beta-trefoil lectin domain RAM_14765 PF03664 Glycosyl hydrolase family 62 RAM_14795 PF00440 Bacterial regulatory proteins, tetR family RAM_14795 PF17754 MftR C-terminal domain RAM_14800 PF13411 MerR HTH family regulatory protein RAM_14815 PF00400 WD domain, G-beta repeat RAM_14815 PF12894 Anaphase-promoting complex subunit 4 WD40 domain RAM_14820 PF01494 FAD binding domain RAM_14835 PF01494 FAD binding domain RAM_14895 PF00561 alpha/beta hydrolase fold RAM_14905 PF00196 Bacterial regulatory proteins, luxR family RAM_14905 PF00072 Response regulator receiver domain RAM_14975 PF00106 short chain dehydrogenase RAM_14985 PF01047 MarR family RAM_15015 PF04542 Sigma-70 region 2 RAM_15015 PF04545 Sigma-70, region 4 RAM_15025 PF12327 FtsZ family, C-terminal domain RAM_15025 PF00091 Tubulin/FtsZ family, GTPase domain RAM_15035 PF01168 Alanine racemase, N-terminal domain RAM_15040 PF04472 Cell division protein SepF RAM_15050 PF05103 DivIVA protein RAM_15065 PF07690 Major Facilitator Superfamily RAM_15070 PF08264 Anticodon-binding domain of tRNA RAM_15070 PF00133 tRNA synthetases class I (I, L, M and V) RAM_15085 PF00999 Sodium/hydrogen exchanger family RAM_15085 PF03471 Transporter associated domain RAM_15085 PF02080 TrkA-C domain RAM_15090 PF00266 Aminotransferase class-V RAM_15100 PF01252 Signal peptidase (SPase) II RAM_15105 PF00849 RNA pseudouridylate synthase RAM_15125 PF00296 Luciferase-like monooxygenase RAM_15135 PF02541 Ppx/GppA phosphatase family RAM_15145 PF03636 Glycosyl hydrolase family 65, N-terminal domain RAM_15145 PF03633 Glycosyl hydrolase family 65, C-terminal domain RAM_15145 PF03632 Glycosyl hydrolase family 65 central catalytic domain RAM_15150 PF13419 Haloacid dehalogenase-like hydrolase RAM_15155 PF01022 Bacterial regulatory protein, arsR family RAM_15180 PF00480 ROK family RAM_15190 PF03055 Retinal pigment epithelial membrane protein RAM_15210 PF04542 Sigma-70 region 2 RAM_15210 PF08281 Sigma-70, region 4 RAM_15215 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RAM_15215 PF00034 Cytochrome c RAM_15215 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_15220 PF01799 [2Fe-2S] binding domain RAM_15220 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_15225 PF17853 GGDEF-like domain RAM_15225 PF13556 PucR C-terminal helix-turn-helix domain RAM_15240 PF08359 YsiA-like protein, C-terminal region RAM_15240 PF00440 Bacterial regulatory proteins, tetR family RAM_15245 PF00106 short chain dehydrogenase RAM_15250 PF00248 Aldo/keto reductase family RAM_15255 PF00004 ATPase family associated with various cellular activities (AAA) RAM_15255 PF17871 AAA lid domain RAM_15255 PF02861 Clp amino terminal domain, pathogenicity island component RAM_15255 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_15255 PF07724 AAA domain (Cdc48 subfamily) RAM_15265 PF00962 Adenosine/AMP deaminase RAM_15275 PF00270 DEAD/DEAH box helicase RAM_15275 PF09382 RQC domain RAM_15275 PF16124 RecQ zinc-binding RAM_15275 PF00570 HRDC domain RAM_15275 PF00271 Helicase conserved C-terminal domain RAM_15305 PF09278 MerR, DNA binding RAM_15305 PF00376 MerR family regulatory protein RAM_15320 PF00512 His Kinase A (phospho-acceptor) domain RAM_15320 PF00672 HAMP domain RAM_15320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_15325 PF00072 Response regulator receiver domain RAM_15325 PF00486 Transcriptional regulatory protein, C terminal RAM_15335 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_15345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_15345 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_15345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_15355 PF00561 alpha/beta hydrolase fold RAM_15360 PF02678 Pirin RAM_15360 PF05726 Pirin C-terminal cupin domain RAM_15370 PF00436 Single-strand binding protein family RAM_15385 PF04075 F420H(2)-dependent quinone reductase RAM_15390 PF00912 Transglycosylase RAM_15390 PF00905 Penicillin binding protein transpeptidase domain RAM_15400 PF00005 ABC transporter RAM_15405 PF13732 Domain of unknown function (DUF4162) RAM_15405 PF00005 ABC transporter RAM_15420 PF00107 Zinc-binding dehydrogenase RAM_15420 PF08240 Alcohol dehydrogenase GroES-like domain RAM_15430 PF06983 3-demethylubiquinone-9 3-methyltransferase RAM_15450 PF13492 GAF domain RAM_15450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_15450 PF07730 Histidine kinase RAM_15455 PF00135 Carboxylesterase family RAM_15460 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_15460 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_15465 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_15465 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_15470 PF01799 [2Fe-2S] binding domain RAM_15470 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_15470 PF10518 TAT (twin-arginine translocation) pathway signal sequence RAM_15490 PF00171 Aldehyde dehydrogenase family RAM_15495 PF07702 UTRA domain RAM_15495 PF00392 Bacterial regulatory proteins, gntR family RAM_15505 PF08240 Alcohol dehydrogenase GroES-like domain RAM_15505 PF13823 Alcohol dehydrogenase GroES-associated RAM_15505 PF00107 Zinc-binding dehydrogenase RAM_15520 PF13581 Histidine kinase-like ATPase domain RAM_15525 PF01740 STAS domain RAM_15530 PF08678 Rsbr N terminal RAM_15530 PF01740 STAS domain RAM_15550 PF00011 Hsp20/alpha crystallin family RAM_15560 PF00115 Cytochrome C and Quinol oxidase polypeptide I RAM_15565 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_15565 PF00128 Alpha amylase, catalytic domain RAM_15570 PF05067 Manganese containing catalase RAM_15580 PF05368 NmrA-like family RAM_15585 PF01638 HxlR-like helix-turn-helix RAM_15615 PF00356 Bacterial regulatory proteins, lacI family RAM_15625 PF00528 Binding-protein-dependent transport system inner membrane component RAM_15630 PF00528 Binding-protein-dependent transport system inner membrane component RAM_15645 PF00440 Bacterial regulatory proteins, tetR family RAM_15650 PF00248 Aldo/keto reductase family RAM_15655 PF01965 DJ-1/PfpI family RAM_15655 PF12833 Helix-turn-helix domain RAM_15660 PF00248 Aldo/keto reductase family RAM_15670 PF08279 HTH domain RAM_15670 PF13280 WYL domain RAM_15680 PF00731 AIR carboxylase RAM_15685 PF09861 Lactate racemase N-terminal domain RAM_15690 PF04909 Amidohydrolase RAM_15695 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_15700 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_15700 PF13378 Enolase C-terminal domain-like RAM_15715 PF00005 ABC transporter RAM_15720 PF02653 Branched-chain amino acid transport system / permease component RAM_15725 PF00248 Aldo/keto reductase family RAM_15750 PF00356 Bacterial regulatory proteins, lacI family RAM_15755 PF00356 Bacterial regulatory proteins, lacI family RAM_15760 PF00501 AMP-binding enzyme RAM_15760 PF13193 AMP-binding enzyme C-terminal domain RAM_15765 PF00561 alpha/beta hydrolase fold RAM_15770 PF11774 Lsr2 RAM_15775 PF13193 AMP-binding enzyme C-terminal domain RAM_15775 PF00501 AMP-binding enzyme RAM_15775 PF00668 Condensation domain RAM_15775 PF00550 Phosphopantetheine attachment site RAM_15780 PF03621 MbtH-like protein RAM_15785 PF00144 Beta-lactamase RAM_15790 PF13193 AMP-binding enzyme C-terminal domain RAM_15790 PF00550 Phosphopantetheine attachment site RAM_15790 PF00668 Condensation domain RAM_15790 PF00501 AMP-binding enzyme RAM_15800 PF00067 Cytochrome P450 RAM_15825 PF08240 Alcohol dehydrogenase GroES-like domain RAM_15825 PF00107 Zinc-binding dehydrogenase RAM_15835 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RAM_15835 PF18416 N-acetylglucosamine binding protein domain 2 RAM_15840 PF12706 Beta-lactamase superfamily domain RAM_15865 PF03364 Polyketide cyclase / dehydrase and lipid transport RAM_15910 PF00378 Enoyl-CoA hydratase/isomerase RAM_15915 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_15915 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_15915 PF00703 Glycosyl hydrolases family 2 RAM_15915 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 RAM_15915 PF16355 Domain of unknown function (DUF4982) RAM_15925 PF00501 AMP-binding enzyme RAM_15925 PF13193 AMP-binding enzyme C-terminal domain RAM_15930 PF13193 AMP-binding enzyme C-terminal domain RAM_15930 PF00501 AMP-binding enzyme RAM_15935 PF02126 Phosphotriesterase family RAM_15940 PF00440 Bacterial regulatory proteins, tetR family RAM_15940 PF17922 Tetracyclin repressor-like, C-terminal domain RAM_15945 PF00561 alpha/beta hydrolase fold RAM_15955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_15955 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_15955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_15960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_15960 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_15960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_15965 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_15965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_15965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_15985 PF13378 Enolase C-terminal domain-like RAM_15985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_16000 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16005 PF03737 Aldolase/RraA RAM_16010 PF00069 Protein kinase domain RAM_16030 PF00072 Response regulator receiver domain RAM_16030 PF00196 Bacterial regulatory proteins, luxR family RAM_16050 PF07690 Major Facilitator Superfamily RAM_16060 PF16736 Single Cache-like RAM_16060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_16060 PF00512 His Kinase A (phospho-acceptor) domain RAM_16060 PF00989 PAS fold RAM_16065 PF00486 Transcriptional regulatory protein, C terminal RAM_16065 PF00072 Response regulator receiver domain RAM_16080 PF00005 ABC transporter RAM_16100 PF00440 Bacterial regulatory proteins, tetR family RAM_16100 PF08362 YcdC-like protein, C-terminal region RAM_16125 PF03120 NAD-dependent DNA ligase OB-fold domain RAM_16125 PF12826 Helix-hairpin-helix motif RAM_16125 PF01653 NAD-dependent DNA ligase adenylation domain RAM_16130 PF00296 Luciferase-like monooxygenase RAM_16140 PF04542 Sigma-70 region 2 RAM_16140 PF08281 Sigma-70, region 4 RAM_16160 PF06441 Epoxide hydrolase N terminus RAM_16170 PF07690 Major Facilitator Superfamily RAM_16185 PF12680 SnoaL-like domain RAM_16185 PF04542 Sigma-70 region 2 RAM_16185 PF08281 Sigma-70, region 4 RAM_16205 PF03741 Integral membrane protein TerC family RAM_16215 PF00128 Alpha amylase, catalytic domain RAM_16225 PF01842 ACT domain RAM_16225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_16225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_16235 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16250 PF08220 DeoR-like helix-turn-helix domain RAM_16250 PF00455 DeoR C terminal sensor domain RAM_16255 PF14032 PknH-like extracellular domain RAM_16255 PF00069 Protein kinase domain RAM_16260 PF00356 Bacterial regulatory proteins, lacI family RAM_16265 PF03793 PASTA domain RAM_16265 PF00069 Protein kinase domain RAM_16270 PF03793 PASTA domain RAM_16270 PF00069 Protein kinase domain RAM_16285 PF12800 4Fe-4S binding domain RAM_16285 PF13247 4Fe-4S dicluster domain RAM_16285 PF09163 Formate dehydrogenase N, transmembrane RAM_16290 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_16290 PF01568 Molydopterin dinucleotide binding domain RAM_16290 PF00384 Molybdopterin oxidoreductase RAM_16295 PF01568 Molydopterin dinucleotide binding domain RAM_16295 PF00384 Molybdopterin oxidoreductase RAM_16295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_16300 PF00083 Sugar (and other) transporter RAM_16315 PF04978 Protein of unknown function (DUF664) RAM_16320 PF00891 O-methyltransferase domain RAM_16325 PF01381 Helix-turn-helix RAM_16340 PF00144 Beta-lactamase RAM_16345 PF00689 Cation transporting ATPase, C-terminus RAM_16355 PF00296 Luciferase-like monooxygenase RAM_16360 PF03466 LysR substrate binding domain RAM_16360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_16370 PF02910 Fumarate reductase flavoprotein C-term RAM_16370 PF00890 FAD binding domain RAM_16375 PF13183 4Fe-4S dicluster domain RAM_16375 PF13085 2Fe-2S iron-sulfur cluster binding domain RAM_16410 PF05506 Domain of unknown function (DUF756) RAM_16410 PF04185 Phosphoesterase family RAM_16420 PF00891 O-methyltransferase domain RAM_16435 PF01266 FAD dependent oxidoreductase RAM_16445 PF04324 BFD-like [2Fe-2S] binding domain RAM_16445 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_16450 PF00701 Dihydrodipicolinate synthetase family RAM_16455 PF05544 Proline racemase RAM_16485 PF13649 Methyltransferase domain RAM_16490 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16495 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16545 PF01594 AI-2E family transporter RAM_16550 PF04616 Glycosyl hydrolases family 43 RAM_16550 PF16369 C-terminal lipocalin-like domain RAM_16560 PF04679 ATP dependent DNA ligase C terminal region RAM_16560 PF01068 ATP dependent DNA ligase domain RAM_16560 PF13298 DNA polymerase Ligase (LigD) RAM_16565 PF00440 Bacterial regulatory proteins, tetR family RAM_16565 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_16575 PF01209 ubiE/COQ5 methyltransferase family RAM_16580 PF13419 Haloacid dehalogenase-like hydrolase RAM_16620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_16620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_16625 PF13193 AMP-binding enzyme C-terminal domain RAM_16625 PF00501 AMP-binding enzyme RAM_16630 PF00378 Enoyl-CoA hydratase/isomerase RAM_16635 PF00501 AMP-binding enzyme RAM_16635 PF13193 AMP-binding enzyme C-terminal domain RAM_16640 PF08240 Alcohol dehydrogenase GroES-like domain RAM_16640 PF00107 Zinc-binding dehydrogenase RAM_16645 PF00171 Aldehyde dehydrogenase family RAM_16665 PF13305 Tetracyclin repressor-like, C-terminal domain RAM_16665 PF00440 Bacterial regulatory proteins, tetR family RAM_16705 PF00550 Phosphopantetheine attachment site RAM_16705 PF13193 AMP-binding enzyme C-terminal domain RAM_16705 PF00501 AMP-binding enzyme RAM_16710 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_16710 PF00553 Cellulose binding domain RAM_16715 PF04616 Glycosyl hydrolases family 43 RAM_16715 PF03422 Carbohydrate binding module (family 6) RAM_16720 PF00331 Glycosyl hydrolase family 10 RAM_16720 PF00652 Ricin-type beta-trefoil lectin domain RAM_16725 PF01341 Glycosyl hydrolases family 6 RAM_16725 PF00553 Cellulose binding domain RAM_16735 PF00652 Ricin-type beta-trefoil lectin domain RAM_16750 PF00652 Ricin-type beta-trefoil lectin domain RAM_16750 PF03664 Glycosyl hydrolase family 62 RAM_16770 PF00356 Bacterial regulatory proteins, lacI family RAM_16785 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) RAM_16790 PF00440 Bacterial regulatory proteins, tetR family RAM_16795 PF04542 Sigma-70 region 2 RAM_16795 PF08281 Sigma-70, region 4 RAM_16810 PF00106 short chain dehydrogenase RAM_16815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_16815 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_16815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_16825 PF06772 Bacterial low temperature requirement A protein (LtrA) RAM_16830 PF03259 Roadblock/LC7 domain RAM_16840 PF00563 EAL domain RAM_16840 PF03707 Bacterial signalling protein N terminal repeat RAM_16840 PF00990 Diguanylate cyclase, GGDEF domain RAM_16850 PF07702 UTRA domain RAM_16850 PF00392 Bacterial regulatory proteins, gntR family RAM_16855 PF07691 PA14 domain RAM_16855 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_16855 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_16860 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16865 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16880 PF00585 C-terminal regulatory domain of Threonine dehydratase RAM_16880 PF00291 Pyridoxal-phosphate dependent enzyme RAM_16890 PF01451 Low molecular weight phosphotyrosine protein phosphatase RAM_16895 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_16895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_16895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_16900 PF00196 Bacterial regulatory proteins, luxR family RAM_16915 PF00072 Response regulator receiver domain RAM_16915 PF00990 Diguanylate cyclase, GGDEF domain RAM_16920 PF00356 Bacterial regulatory proteins, lacI family RAM_16955 PF00440 Bacterial regulatory proteins, tetR family RAM_16955 PF13305 Tetracyclin repressor-like, C-terminal domain RAM_16960 PF00089 Trypsin RAM_16965 PF00440 Bacterial regulatory proteins, tetR family RAM_16975 PF08281 Sigma-70, region 4 RAM_16975 PF04542 Sigma-70 region 2 RAM_16985 PF00925 GTP cyclohydrolase II RAM_17010 PF00440 Bacterial regulatory proteins, tetR family RAM_17010 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_17020 PF08386 TAP-like protein RAM_17020 PF00561 alpha/beta hydrolase fold RAM_17035 PF00296 Luciferase-like monooxygenase RAM_17050 PF04607 Region found in RelA / SpoT proteins RAM_17055 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_17055 PF00440 Bacterial regulatory proteins, tetR family RAM_17060 PF00067 Cytochrome P450 RAM_17075 PF01810 LysE type translocator RAM_17080 PF00226 DnaJ domain RAM_17080 PF00684 DnaJ central domain RAM_17080 PF01556 DnaJ C terminal domain RAM_17085 PF00501 AMP-binding enzyme RAM_17085 PF13193 AMP-binding enzyme C-terminal domain RAM_17100 PF01263 Aldose 1-epimerase RAM_17110 PF03176 MMPL family RAM_17115 PF07690 Major Facilitator Superfamily RAM_17120 PF00501 AMP-binding enzyme RAM_17125 PF08659 KR domain RAM_17125 PF14765 Polyketide synthase dehydratase RAM_17125 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_17125 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_17125 PF16197 Ketoacyl-synthetase C-terminal extension RAM_17125 PF00550 Phosphopantetheine attachment site RAM_17125 PF00698 Acyl transferase domain RAM_17130 PF01039 Carboxyl transferase domain RAM_17180 PF00378 Enoyl-CoA hydratase/isomerase RAM_17185 PF01144 Coenzyme A transferase RAM_17195 PF03060 Nitronate monooxygenase RAM_17200 PF00296 Luciferase-like monooxygenase RAM_17205 PF02803 Thiolase, C-terminal domain RAM_17205 PF00108 Thiolase, N-terminal domain RAM_17215 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_17215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_17215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_17220 PF13193 AMP-binding enzyme C-terminal domain RAM_17220 PF00501 AMP-binding enzyme RAM_17225 PF00378 Enoyl-CoA hydratase/isomerase RAM_17230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_17230 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_17230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_17235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_17235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_17235 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_17240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_17240 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_17240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_17255 PF07729 FCD domain RAM_17255 PF00392 Bacterial regulatory proteins, gntR family RAM_17260 PF01223 DNA/RNA non-specific endonuclease RAM_17275 PF00107 Zinc-binding dehydrogenase RAM_17275 PF08240 Alcohol dehydrogenase GroES-like domain RAM_17280 PF00561 alpha/beta hydrolase fold RAM_17285 PF00672 HAMP domain RAM_17285 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_17295 PF00037 4Fe-4S binding domain RAM_17295 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_17300 PF00440 Bacterial regulatory proteins, tetR family RAM_17305 PF04072 Leucine carboxyl methyltransferase RAM_17320 PF16499 Alpha galactosidase A RAM_17320 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_17325 PF00356 Bacterial regulatory proteins, lacI family RAM_17330 PF13416 Bacterial extracellular solute-binding protein RAM_17335 PF00528 Binding-protein-dependent transport system inner membrane component RAM_17340 PF00528 Binding-protein-dependent transport system inner membrane component RAM_17345 PF07944 Beta-L-arabinofuranosidase, GH127 RAM_17365 PF02031 Streptomyces extracellular neutral proteinase (M7) family RAM_17370 PF00440 Bacterial regulatory proteins, tetR family RAM_17375 PF07690 Major Facilitator Superfamily RAM_17390 PF00480 ROK family RAM_17395 PF13520 Amino acid permease RAM_17400 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain RAM_17400 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_17400 PF00703 Glycosyl hydrolases family 2 RAM_17400 PF16990 Carbohydrate binding module (family 35) RAM_17405 PF00480 ROK family RAM_17415 PF00356 Bacterial regulatory proteins, lacI family RAM_17430 PF00067 Cytochrome P450 RAM_17460 PF01479 S4 domain RAM_17460 PF00849 RNA pseudouridylate synthase RAM_17470 PF01047 MarR family RAM_17475 PF00296 Luciferase-like monooxygenase RAM_17485 PF04226 Transglycosylase associated protein RAM_17490 PF00753 Metallo-beta-lactamase superfamily RAM_17525 PF13193 AMP-binding enzyme C-terminal domain RAM_17525 PF00501 AMP-binding enzyme RAM_17530 PF01975 Survival protein SurE RAM_17550 PF08240 Alcohol dehydrogenase GroES-like domain RAM_17555 PF01370 NAD dependent epimerase/dehydratase family RAM_17580 PF07969 Amidohydrolase family RAM_17595 PF13378 Enolase C-terminal domain-like RAM_17595 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_17600 PF00144 Beta-lactamase RAM_17615 PF00528 Binding-protein-dependent transport system inner membrane component RAM_17620 PF00005 ABC transporter RAM_17620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_17625 PF00005 ABC transporter RAM_17625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_17630 PF00144 Beta-lactamase RAM_17635 PF07690 Major Facilitator Superfamily RAM_17660 PF07690 Major Facilitator Superfamily RAM_17665 PF00067 Cytochrome P450 RAM_17670 PF00717 Peptidase S24-like RAM_17670 PF01726 LexA DNA binding domain RAM_17675 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RAM_17685 PF00698 Acyl transferase domain RAM_17685 PF14765 Polyketide synthase dehydratase RAM_17685 PF08240 Alcohol dehydrogenase GroES-like domain RAM_17685 PF08659 KR domain RAM_17685 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_17685 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_17685 PF16197 Ketoacyl-synthetase C-terminal extension RAM_17685 PF00550 Phosphopantetheine attachment site RAM_17690 PF03422 Carbohydrate binding module (family 6) RAM_17690 PF04616 Glycosyl hydrolases family 43 RAM_17705 PF01593 Flavin containing amine oxidoreductase RAM_17710 PF00294 pfkB family carbohydrate kinase RAM_17715 PF01008 Initiation factor 2 subunit family RAM_17715 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_17725 PF00893 Small Multidrug Resistance protein RAM_17735 PF03773 Predicted permease RAM_17750 PF00196 Bacterial regulatory proteins, luxR family RAM_17770 PF00501 AMP-binding enzyme RAM_17770 PF13193 AMP-binding enzyme C-terminal domain RAM_17775 PF00296 Luciferase-like monooxygenase RAM_17790 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_17790 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_17805 PF01161 Phosphatidylethanolamine-binding protein RAM_17820 PF08240 Alcohol dehydrogenase GroES-like domain RAM_17820 PF00107 Zinc-binding dehydrogenase RAM_17825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_17825 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_17835 PF00196 Bacterial regulatory proteins, luxR family RAM_17850 PF00403 Heavy-metal-associated domain RAM_17855 PF01435 Peptidase family M48 RAM_17885 PF03358 NADPH-dependent FMN reductase RAM_17885 PF01566 Natural resistance-associated macrophage protein RAM_17890 PF02080 TrkA-C domain RAM_17890 PF00999 Sodium/hydrogen exchanger family RAM_17890 PF02254 TrkA-N domain RAM_17920 PF00391 PEP-utilising enzyme, mobile domain RAM_17920 PF01370 NAD dependent epimerase/dehydratase family RAM_17925 PF12419 SNF2 Helicase protein RAM_17925 PF00271 Helicase conserved C-terminal domain RAM_17925 PF00176 SNF2 family N-terminal domain RAM_17930 PF04434 SWIM zinc finger RAM_17965 PF01494 FAD binding domain RAM_17995 PF01645 Conserved region in glutamate synthase RAM_18000 PF00072 Response regulator receiver domain RAM_18000 PF00486 Transcriptional regulatory protein, C terminal RAM_18005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_18005 PF00512 His Kinase A (phospho-acceptor) domain RAM_18005 PF00989 PAS fold RAM_18005 PF16736 Single Cache-like RAM_18020 PF00005 ABC transporter RAM_18020 PF02687 FtsX-like permease family RAM_18020 PF12704 MacB-like periplasmic core domain RAM_18025 PF02687 FtsX-like permease family RAM_18025 PF00005 ABC transporter RAM_18025 PF12704 MacB-like periplasmic core domain RAM_18040 PF00083 Sugar (and other) transporter RAM_18045 PF00561 alpha/beta hydrolase fold RAM_18055 PF07730 Histidine kinase RAM_18060 PF00072 Response regulator receiver domain RAM_18060 PF00196 Bacterial regulatory proteins, luxR family RAM_18065 PF00144 Beta-lactamase RAM_18085 PF07730 Histidine kinase RAM_18115 PF14525 AraC-binding-like domain RAM_18115 PF12833 Helix-turn-helix domain RAM_18125 PF00106 short chain dehydrogenase RAM_18130 PF00106 short chain dehydrogenase RAM_18185 PF00067 Cytochrome P450 RAM_18205 PF00486 Transcriptional regulatory protein, C terminal RAM_18205 PF00072 Response regulator receiver domain RAM_18210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_18210 PF00512 His Kinase A (phospho-acceptor) domain RAM_18210 PF00672 HAMP domain RAM_18230 PF01522 Polysaccharide deacetylase RAM_18255 PF01339 CheB methylesterase RAM_18255 PF03705 CheR methyltransferase, all-alpha domain RAM_18255 PF01739 CheR methyltransferase, SAM binding domain RAM_18255 PF08448 PAS fold RAM_18260 PF01339 CheB methylesterase RAM_18265 PF01494 FAD binding domain RAM_18285 PF00107 Zinc-binding dehydrogenase RAM_18285 PF08240 Alcohol dehydrogenase GroES-like domain RAM_18300 PF00484 Carbonic anhydrase RAM_18320 PF07859 alpha/beta hydrolase fold RAM_18350 PF00106 short chain dehydrogenase RAM_18355 PF12894 Anaphase-promoting complex subunit 4 WD40 domain RAM_18355 PF00400 WD domain, G-beta repeat RAM_18370 PF09278 MerR, DNA binding RAM_18370 PF00376 MerR family regulatory protein RAM_18380 PF08281 Sigma-70, region 4 RAM_18380 PF12680 SnoaL-like domain RAM_18380 PF04542 Sigma-70 region 2 RAM_18405 PF08291 Peptidase M15 RAM_18405 PF01471 Putative peptidoglycan binding domain RAM_18420 PF00486 Transcriptional regulatory protein, C terminal RAM_18420 PF00931 NB-ARC domain RAM_18420 PF03704 Bacterial transcriptional activator domain RAM_18425 PF00072 Response regulator receiver domain RAM_18425 PF00196 Bacterial regulatory proteins, luxR family RAM_18430 PF01648 4'-phosphopantetheinyl transferase superfamily RAM_18435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_18435 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_18435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_18450 PF00550 Phosphopantetheine attachment site RAM_18455 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_18455 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_18475 PF00005 ABC transporter RAM_18475 PF13732 Domain of unknown function (DUF4162) RAM_18485 PF16861 Carbamoyltransferase C-terminus RAM_18485 PF02543 Carbamoyltransferase N-terminus RAM_18520 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_18520 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_18525 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_18525 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_18530 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_18530 PF01799 [2Fe-2S] binding domain RAM_18530 PF10518 TAT (twin-arginine translocation) pathway signal sequence RAM_18540 PF16499 Alpha galactosidase A RAM_18540 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_18575 PF04075 F420H(2)-dependent quinone reductase RAM_18585 PF00440 Bacterial regulatory proteins, tetR family RAM_18605 PF00144 Beta-lactamase RAM_18620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_18620 PF03466 LysR substrate binding domain RAM_18660 PF08659 KR domain RAM_18660 PF16197 Ketoacyl-synthetase C-terminal extension RAM_18660 PF00550 Phosphopantetheine attachment site RAM_18660 PF14765 Polyketide synthase dehydratase RAM_18660 PF08990 Erythronolide synthase docking RAM_18660 PF08240 Alcohol dehydrogenase GroES-like domain RAM_18660 PF00698 Acyl transferase domain RAM_18660 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_18660 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_18690 PF00561 alpha/beta hydrolase fold RAM_18695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_18695 PF03466 LysR substrate binding domain RAM_18720 PF00457 Glycosyl hydrolases family 11 RAM_18720 PF01522 Polysaccharide deacetylase RAM_18725 PF04616 Glycosyl hydrolases family 43 RAM_18740 PF16197 Ketoacyl-synthetase C-terminal extension RAM_18740 PF00698 Acyl transferase domain RAM_18740 PF00668 Condensation domain RAM_18740 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_18740 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_18740 PF00550 Phosphopantetheine attachment site RAM_18745 PF00975 Thioesterase domain RAM_18745 PF13193 AMP-binding enzyme C-terminal domain RAM_18745 PF00501 AMP-binding enzyme RAM_18745 PF00550 Phosphopantetheine attachment site RAM_18745 PF00668 Condensation domain RAM_18755 PF00550 Phosphopantetheine attachment site RAM_18755 PF07993 Male sterility protein RAM_18755 PF00668 Condensation domain RAM_18755 PF13193 AMP-binding enzyme C-terminal domain RAM_18755 PF00501 AMP-binding enzyme RAM_18760 PF00550 Phosphopantetheine attachment site RAM_18760 PF13193 AMP-binding enzyme C-terminal domain RAM_18760 PF00668 Condensation domain RAM_18760 PF00975 Thioesterase domain RAM_18760 PF00501 AMP-binding enzyme RAM_18765 PF00550 Phosphopantetheine attachment site RAM_18765 PF00668 Condensation domain RAM_18765 PF13193 AMP-binding enzyme C-terminal domain RAM_18765 PF00501 AMP-binding enzyme RAM_18790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_18790 PF00672 HAMP domain RAM_18790 PF00512 His Kinase A (phospho-acceptor) domain RAM_18795 PF00486 Transcriptional regulatory protein, C terminal RAM_18795 PF00072 Response regulator receiver domain RAM_18805 PF00072 Response regulator receiver domain RAM_18805 PF00196 Bacterial regulatory proteins, luxR family RAM_18810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_18810 PF05231 MASE1 RAM_18810 PF07730 Histidine kinase RAM_18825 PF01494 FAD binding domain RAM_18840 PF00872 Transposase, Mutator family RAM_18860 PF00440 Bacterial regulatory proteins, tetR family RAM_18870 PF01037 Lrp/AsnC ligand binding domain RAM_18880 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_18880 PF00698 Acyl transferase domain RAM_18880 PF08240 Alcohol dehydrogenase GroES-like domain RAM_18880 PF16197 Ketoacyl-synthetase C-terminal extension RAM_18880 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_18880 PF08659 KR domain RAM_18880 PF00550 Phosphopantetheine attachment site RAM_18880 PF14765 Polyketide synthase dehydratase RAM_18885 PF07859 alpha/beta hydrolase fold RAM_18900 PF02929 Beta galactosidase small chain RAM_18900 PF16353 Domain of unknown function(DUF4981) RAM_18900 PF00703 Glycosyl hydrolases family 2 RAM_18900 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_18900 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_18905 PF00041 Fibronectin type III domain RAM_18905 PF00704 Glycosyl hydrolases family 18 RAM_18925 PF07690 Major Facilitator Superfamily RAM_18935 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_18935 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_18945 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_18945 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_18950 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_18950 PF10518 TAT (twin-arginine translocation) pathway signal sequence RAM_18950 PF01799 [2Fe-2S] binding domain RAM_18955 PF07690 Major Facilitator Superfamily RAM_18960 PF00107 Zinc-binding dehydrogenase RAM_18960 PF08240 Alcohol dehydrogenase GroES-like domain RAM_18960 PF13823 Alcohol dehydrogenase GroES-associated RAM_19015 PF01183 Glycosyl hydrolases family 25 RAM_19030 PF03600 Citrate transporter RAM_19035 PF10503 Esterase PHB depolymerase RAM_19045 PF00480 ROK family RAM_19045 PF01047 MarR family RAM_19050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_19055 PF00528 Binding-protein-dependent transport system inner membrane component RAM_19060 PF00005 ABC transporter RAM_19060 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_19065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_19065 PF00005 ABC transporter RAM_19075 PF00356 Bacterial regulatory proteins, lacI family RAM_19080 PF02156 Glycosyl hydrolase family 26 RAM_19090 PF00480 ROK family RAM_19095 PF16875 Glycosyl hydrolase family 36 N-terminal domain RAM_19095 PF16874 Glycosyl hydrolase family 36 C-terminal domain RAM_19100 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_19100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19105 PF12833 Helix-turn-helix domain RAM_19105 PF12852 Cupin RAM_19115 PF01494 FAD binding domain RAM_19165 PF03330 Lytic transglycolase RAM_19175 PF00072 Response regulator receiver domain RAM_19175 PF00486 Transcriptional regulatory protein, C terminal RAM_19180 PF00512 His Kinase A (phospho-acceptor) domain RAM_19180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_19180 PF00672 HAMP domain RAM_19190 PF01757 Acyltransferase family RAM_19215 PF00561 alpha/beta hydrolase fold RAM_19215 PF08386 TAP-like protein RAM_19220 PF08241 Methyltransferase domain RAM_19230 PF01022 Bacterial regulatory protein, arsR family RAM_19250 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RAM_19250 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RAM_19265 PF01300 Telomere recombination RAM_19265 PF00708 Acylphosphatase RAM_19265 PF07503 HypF finger RAM_19265 PF17788 HypF Kae1-like domain RAM_19270 PF02492 CobW/HypB/UreG, nucleotide-binding domain RAM_19275 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RAM_19280 PF02769 AIR synthase related protein, C-terminal domain RAM_19280 PF00586 AIR synthase related protein, N-terminal domain RAM_19285 PF01924 Hydrogenase formation hypA family RAM_19290 PF01455 HupF/HypC family RAM_19320 PF00374 Nickel-dependent hydrogenase RAM_19325 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RAM_19325 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RAM_19330 PF13580 SIS domain RAM_19340 PF13580 SIS domain RAM_19380 PF00486 Transcriptional regulatory protein, C terminal RAM_19380 PF00931 NB-ARC domain RAM_19380 PF03704 Bacterial transcriptional activator domain RAM_19385 PF00561 alpha/beta hydrolase fold RAM_19390 PF00107 Zinc-binding dehydrogenase RAM_19390 PF08240 Alcohol dehydrogenase GroES-like domain RAM_19395 PF00378 Enoyl-CoA hydratase/isomerase RAM_19395 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_19395 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_19400 PF01638 HxlR-like helix-turn-helix RAM_19420 PF00440 Bacterial regulatory proteins, tetR family RAM_19425 PF14765 Polyketide synthase dehydratase RAM_19425 PF00550 Phosphopantetheine attachment site RAM_19425 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_19425 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_19425 PF00698 Acyl transferase domain RAM_19425 PF08659 KR domain RAM_19425 PF08240 Alcohol dehydrogenase GroES-like domain RAM_19425 PF16197 Ketoacyl-synthetase C-terminal extension RAM_19435 PF00296 Luciferase-like monooxygenase RAM_19480 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_19480 PF00005 ABC transporter RAM_19485 PF00005 ABC transporter RAM_19490 PF00378 Enoyl-CoA hydratase/isomerase RAM_19495 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19500 PF13193 AMP-binding enzyme C-terminal domain RAM_19500 PF00501 AMP-binding enzyme RAM_19505 PF02551 Acyl-CoA thioesterase RAM_19515 PF00378 Enoyl-CoA hydratase/isomerase RAM_19520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19520 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19525 PF00171 Aldehyde dehydrogenase family RAM_19535 PF02515 CoA-transferase family III RAM_19540 PF00108 Thiolase, N-terminal domain RAM_19540 PF02803 Thiolase, C-terminal domain RAM_19545 PF03060 Nitronate monooxygenase RAM_19550 PF00753 Metallo-beta-lactamase superfamily RAM_19555 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_19555 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_19560 PF00171 Aldehyde dehydrogenase family RAM_19600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19600 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19620 PF02803 Thiolase, C-terminal domain RAM_19620 PF00108 Thiolase, N-terminal domain RAM_19625 PF00106 short chain dehydrogenase RAM_19635 PF00108 Thiolase, N-terminal domain RAM_19635 PF02803 Thiolase, C-terminal domain RAM_19640 PF00378 Enoyl-CoA hydratase/isomerase RAM_19650 PF00232 Glycosyl hydrolase family 1 RAM_19655 PF00106 short chain dehydrogenase RAM_19670 PF00378 Enoyl-CoA hydratase/isomerase RAM_19675 PF00378 Enoyl-CoA hydratase/isomerase RAM_19680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19680 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19685 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19690 PF00501 AMP-binding enzyme RAM_19690 PF13193 AMP-binding enzyme C-terminal domain RAM_19710 PF07729 FCD domain RAM_19710 PF00392 Bacterial regulatory proteins, gntR family RAM_19715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19715 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19730 PF05893 Acyl-CoA reductase (LuxC) RAM_19735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19735 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19740 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19745 PF00378 Enoyl-CoA hydratase/isomerase RAM_19750 PF07702 UTRA domain RAM_19750 PF00392 Bacterial regulatory proteins, gntR family RAM_19755 PF00106 short chain dehydrogenase RAM_19760 PF00809 Pterin binding enzyme RAM_19765 PF00501 AMP-binding enzyme RAM_19765 PF13193 AMP-binding enzyme C-terminal domain RAM_19780 PF12697 Alpha/beta hydrolase family RAM_19790 PF00440 Bacterial regulatory proteins, tetR family RAM_19795 PF00890 FAD binding domain RAM_19800 PF02585 GlcNAc-PI de-N-acetylase RAM_19805 PF00486 Transcriptional regulatory protein, C terminal RAM_19805 PF03704 Bacterial transcriptional activator domain RAM_19805 PF00931 NB-ARC domain RAM_19825 PF00175 Oxidoreductase NAD-binding domain RAM_19825 PF00042 Globin RAM_19825 PF00970 Oxidoreductase FAD-binding domain RAM_19830 PF00480 ROK family RAM_19835 PF07350 Protein of unknown function (DUF1479) RAM_19840 PF01546 Peptidase family M20/M25/M40 RAM_19840 PF07687 Peptidase dimerisation domain RAM_19850 PF13520 Amino acid permease RAM_19855 PF00723 Glycosyl hydrolases family 15 RAM_19860 PF07690 Major Facilitator Superfamily RAM_19880 PF00072 Response regulator receiver domain RAM_19880 PF00196 Bacterial regulatory proteins, luxR family RAM_19910 PF13191 AAA ATPase domain RAM_19910 PF00069 Protein kinase domain RAM_19915 PF01594 AI-2E family transporter RAM_19925 PF07995 Glucose / Sorbosone dehydrogenase RAM_19935 PF02056 Family 4 glycosyl hydrolase RAM_19935 PF11975 Family 4 glycosyl hydrolase C-terminal domain RAM_19940 PF00528 Binding-protein-dependent transport system inner membrane component RAM_19945 PF00528 Binding-protein-dependent transport system inner membrane component RAM_19960 PF08220 DeoR-like helix-turn-helix domain RAM_19960 PF00455 DeoR C terminal sensor domain RAM_19965 PF01380 SIS domain RAM_19985 PF00294 pfkB family carbohydrate kinase RAM_19990 PF01116 Fructose-bisphosphate aldolase class-II RAM_20005 PF14765 Polyketide synthase dehydratase RAM_20005 PF00698 Acyl transferase domain RAM_20005 PF16197 Ketoacyl-synthetase C-terminal extension RAM_20005 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_20005 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_20005 PF08659 KR domain RAM_20005 PF00550 Phosphopantetheine attachment site RAM_20010 PF00067 Cytochrome P450 RAM_20020 PF16197 Ketoacyl-synthetase C-terminal extension RAM_20020 PF08990 Erythronolide synthase docking RAM_20020 PF08240 Alcohol dehydrogenase GroES-like domain RAM_20020 PF00698 Acyl transferase domain RAM_20020 PF09277 Erythronolide synthase, docking RAM_20020 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_20020 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_20020 PF08659 KR domain RAM_20020 PF00550 Phosphopantetheine attachment site RAM_20020 PF14765 Polyketide synthase dehydratase RAM_20030 PF04542 Sigma-70 region 2 RAM_20030 PF12680 SnoaL-like domain RAM_20030 PF08281 Sigma-70, region 4 RAM_20035 PF00041 Fibronectin type III domain RAM_20035 PF00942 Cellulose binding domain RAM_20035 PF00553 Cellulose binding domain RAM_20035 PF00759 Glycosyl hydrolase family 9 RAM_20055 PF06441 Epoxide hydrolase N terminus RAM_20065 PF02911 Formyl transferase, C-terminal domain RAM_20065 PF00378 Enoyl-CoA hydratase/isomerase RAM_20065 PF00551 Formyl transferase RAM_20070 PF00931 NB-ARC domain RAM_20070 PF03704 Bacterial transcriptional activator domain RAM_20070 PF00486 Transcriptional regulatory protein, C terminal RAM_20080 PF00664 ABC transporter transmembrane region RAM_20080 PF00005 ABC transporter RAM_20105 PF09278 MerR, DNA binding RAM_20105 PF00376 MerR family regulatory protein RAM_20110 PF00501 AMP-binding enzyme RAM_20110 PF13193 AMP-binding enzyme C-terminal domain RAM_20130 PF00106 short chain dehydrogenase RAM_20135 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_20135 PF13378 Enolase C-terminal domain-like RAM_20140 PF00528 Binding-protein-dependent transport system inner membrane component RAM_20145 PF00528 Binding-protein-dependent transport system inner membrane component RAM_20150 PF01547 Bacterial extracellular solute-binding protein RAM_20155 PF07729 FCD domain RAM_20155 PF00392 Bacterial regulatory proteins, gntR family RAM_20165 PF03033 Glycosyltransferase family 28 N-terminal domain RAM_20180 PF00067 Cytochrome P450 RAM_20185 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RAM_20200 PF00975 Thioesterase domain RAM_20200 PF00501 AMP-binding enzyme RAM_20200 PF13193 AMP-binding enzyme C-terminal domain RAM_20200 PF00668 Condensation domain RAM_20200 PF00550 Phosphopantetheine attachment site RAM_20210 PF00440 Bacterial regulatory proteins, tetR family RAM_20240 PF01494 FAD binding domain RAM_20250 PF01325 Iron dependent repressor, N-terminal DNA binding domain RAM_20250 PF00480 ROK family RAM_20255 PF00480 ROK family RAM_20255 PF01047 MarR family RAM_20270 PF02653 Branched-chain amino acid transport system / permease component RAM_20280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_20280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_20290 PF00107 Zinc-binding dehydrogenase RAM_20290 PF08240 Alcohol dehydrogenase GroES-like domain RAM_20340 PF00440 Bacterial regulatory proteins, tetR family RAM_20340 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_20350 PF01341 Glycosyl hydrolases family 6 RAM_20350 PF00553 Cellulose binding domain RAM_20355 PF00652 Ricin-type beta-trefoil lectin domain RAM_20355 PF00331 Glycosyl hydrolase family 10 RAM_20360 PF00652 Ricin-type beta-trefoil lectin domain RAM_20360 PF16483 Beta-1,3-glucanase RAM_20365 PF00652 Ricin-type beta-trefoil lectin domain RAM_20365 PF00331 Glycosyl hydrolase family 10 RAM_20370 PF08240 Alcohol dehydrogenase GroES-like domain RAM_20370 PF00107 Zinc-binding dehydrogenase RAM_20375 PF17926 Tetracyclin repressor-like, C-terminal domain RAM_20375 PF00440 Bacterial regulatory proteins, tetR family RAM_20380 PF13193 AMP-binding enzyme C-terminal domain RAM_20380 PF00501 AMP-binding enzyme RAM_20385 PF07730 Histidine kinase RAM_20385 PF13185 GAF domain RAM_20385 PF13492 GAF domain RAM_20385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_20390 PF00083 Sugar (and other) transporter RAM_20395 PF07519 Tannase and feruloyl esterase RAM_20400 PF14310 Fibronectin type III-like domain RAM_20400 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_20400 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_20415 PF00331 Glycosyl hydrolase family 10 RAM_20415 PF00652 Ricin-type beta-trefoil lectin domain RAM_20420 PF07905 Purine catabolism regulatory protein-like family RAM_20420 PF13556 PucR C-terminal helix-turn-helix domain RAM_20420 PF17853 GGDEF-like domain RAM_20425 PF00550 Phosphopantetheine attachment site RAM_20430 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_20430 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_20435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_20435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_20440 PF00535 Glycosyl transferase family 2 RAM_20445 PF00067 Cytochrome P450 RAM_20450 PF13193 AMP-binding enzyme C-terminal domain RAM_20450 PF00501 AMP-binding enzyme RAM_20460 PF00486 Transcriptional regulatory protein, C terminal RAM_20460 PF03704 Bacterial transcriptional activator domain RAM_20465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_20465 PF03466 LysR substrate binding domain RAM_20490 PF01047 MarR family RAM_20495 PF00486 Transcriptional regulatory protein, C terminal RAM_20495 PF00931 NB-ARC domain RAM_20495 PF03704 Bacterial transcriptional activator domain RAM_20500 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_20500 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_20505 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_20505 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_20515 PF00072 Response regulator receiver domain RAM_20515 PF00196 Bacterial regulatory proteins, luxR family RAM_20525 PF02687 FtsX-like permease family RAM_20525 PF12704 MacB-like periplasmic core domain RAM_20525 PF00005 ABC transporter RAM_20555 PF00291 Pyridoxal-phosphate dependent enzyme RAM_20560 PF00550 Phosphopantetheine attachment site RAM_20560 PF00668 Condensation domain RAM_20560 PF13193 AMP-binding enzyme C-terminal domain RAM_20560 PF00501 AMP-binding enzyme RAM_20560 PF13193 AMP-binding enzyme C-terminal domain RAM_20560 PF00550 Phosphopantetheine attachment site RAM_20560 PF00501 AMP-binding enzyme RAM_20560 PF00668 Condensation domain RAM_20570 PF03621 MbtH-like protein RAM_20575 PF00005 ABC transporter RAM_20575 PF13732 Domain of unknown function (DUF4162) RAM_20585 PF00291 Pyridoxal-phosphate dependent enzyme RAM_20595 PF02655 ATP-grasp domain RAM_20610 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_20610 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_20615 PF00550 Phosphopantetheine attachment site RAM_20620 PF03704 Bacterial transcriptional activator domain RAM_20620 PF00931 NB-ARC domain RAM_20620 PF00486 Transcriptional regulatory protein, C terminal RAM_20625 PF00137 ATP synthase subunit C RAM_20645 PF10503 Esterase PHB depolymerase RAM_20650 PF00512 His Kinase A (phospho-acceptor) domain RAM_20650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_20650 PF00672 HAMP domain RAM_20655 PF00072 Response regulator receiver domain RAM_20655 PF00486 Transcriptional regulatory protein, C terminal RAM_20660 PF00144 Beta-lactamase RAM_20665 PF00459 Inositol monophosphatase family RAM_20670 PF03466 LysR substrate binding domain RAM_20670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_20685 PF00083 Sugar (and other) transporter RAM_20695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_20695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_20705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_20705 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_20705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_20715 PF00501 AMP-binding enzyme RAM_20715 PF00550 Phosphopantetheine attachment site RAM_20715 PF00668 Condensation domain RAM_20715 PF13193 AMP-binding enzyme C-terminal domain RAM_20715 PF00501 AMP-binding enzyme RAM_20715 PF00668 Condensation domain RAM_20715 PF13193 AMP-binding enzyme C-terminal domain RAM_20715 PF00550 Phosphopantetheine attachment site RAM_20720 PF00668 Condensation domain RAM_20720 PF00550 Phosphopantetheine attachment site RAM_20720 PF00501 AMP-binding enzyme RAM_20720 PF13193 AMP-binding enzyme C-terminal domain RAM_20720 PF00501 AMP-binding enzyme RAM_20720 PF13193 AMP-binding enzyme C-terminal domain RAM_20720 PF00668 Condensation domain RAM_20720 PF00550 Phosphopantetheine attachment site RAM_20725 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_20725 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_20735 PF01593 Flavin containing amine oxidoreductase RAM_20740 PF01593 Flavin containing amine oxidoreductase RAM_20745 PF01209 ubiE/COQ5 methyltransferase family RAM_20765 PF01593 Flavin containing amine oxidoreductase RAM_20785 PF01593 Flavin containing amine oxidoreductase RAM_20815 PF00528 Binding-protein-dependent transport system inner membrane component RAM_20820 PF00528 Binding-protein-dependent transport system inner membrane component RAM_20835 PF00356 Bacterial regulatory proteins, lacI family RAM_20855 PF00553 Cellulose binding domain RAM_20855 PF00704 Glycosyl hydrolases family 18 RAM_20855 PF00041 Fibronectin type III domain RAM_20865 PF01043 SecA preprotein cross-linking domain RAM_20865 PF07517 SecA DEAD-like domain RAM_20865 PF02810 SEC-C motif RAM_20865 PF07516 SecA Wing and Scaffold domain RAM_20880 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_20880 PF00553 Cellulose binding domain RAM_20900 PF00561 alpha/beta hydrolase fold RAM_20910 PF00296 Luciferase-like monooxygenase RAM_20920 PF00141 Peroxidase RAM_20925 PF01475 Ferric uptake regulator family RAM_20930 PF00303 Thymidylate synthase RAM_20935 PF00186 Dihydrofolate reductase RAM_20940 PF00732 GMC oxidoreductase RAM_20940 PF05199 GMC oxidoreductase RAM_20945 PF00171 Aldehyde dehydrogenase family RAM_20950 PF13091 PLD-like domain RAM_20970 PF00355 Rieske [2Fe-2S] domain RAM_20980 PF03405 Fatty acid desaturase RAM_20985 PF03648 Glycosyl hydrolase family 67 N-terminus RAM_20985 PF07488 Glycosyl hydrolase family 67 middle domain RAM_20985 PF07477 Glycosyl hydrolase family 67 C-terminus RAM_21000 PF00106 short chain dehydrogenase RAM_21040 PF00072 Response regulator receiver domain RAM_21040 PF01339 CheB methylesterase RAM_21045 PF00072 Response regulator receiver domain RAM_21045 PF01339 CheB methylesterase RAM_21055 PF01339 CheB methylesterase RAM_21055 PF01739 CheR methyltransferase, SAM binding domain RAM_21055 PF03705 CheR methyltransferase, all-alpha domain RAM_21055 PF08448 PAS fold RAM_21065 PF00749 tRNA synthetases class I (E and Q), catalytic domain RAM_21110 PF07690 Major Facilitator Superfamily RAM_21125 PF04978 Protein of unknown function (DUF664) RAM_21130 PF01068 ATP dependent DNA ligase domain RAM_21130 PF04679 ATP dependent DNA ligase C terminal region RAM_21155 PF07683 Cobalamin synthesis protein cobW C-terminal domain RAM_21155 PF02492 CobW/HypB/UreG, nucleotide-binding domain RAM_21160 PF02898 Nitric oxide synthase, oxygenase domain RAM_21170 PF07690 Major Facilitator Superfamily RAM_21180 PF03601 Conserved hypothetical protein 698 RAM_21185 PF03466 LysR substrate binding domain RAM_21185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_21190 PF03466 LysR substrate binding domain RAM_21190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_21210 PF00246 Zinc carboxypeptidase RAM_21220 PF00289 Biotin carboxylase, N-terminal domain RAM_21220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_21220 PF02785 Biotin carboxylase C-terminal domain RAM_21255 PF00392 Bacterial regulatory proteins, gntR family RAM_21255 PF00155 Aminotransferase class I and II RAM_21260 PF07690 Major Facilitator Superfamily RAM_21270 PF02577 Bifunctional nuclease RAM_21275 PF04542 Sigma-70 region 2 RAM_21275 PF08281 Sigma-70, region 4 RAM_21275 PF12680 SnoaL-like domain RAM_21285 PF00501 AMP-binding enzyme RAM_21310 PF05958 tRNA (Uracil-5-)-methyltransferase RAM_21310 PF01938 TRAM domain RAM_21335 PF13298 DNA polymerase Ligase (LigD) RAM_21335 PF01068 ATP dependent DNA ligase domain RAM_21335 PF04679 ATP dependent DNA ligase C terminal region RAM_21340 PF00294 pfkB family carbohydrate kinase RAM_21345 PF00271 Helicase conserved C-terminal domain RAM_21345 PF00270 DEAD/DEAH box helicase RAM_21345 PF00570 HRDC domain RAM_21345 PF09382 RQC domain RAM_21345 PF16124 RecQ zinc-binding RAM_21375 PF04679 ATP dependent DNA ligase C terminal region RAM_21375 PF01068 ATP dependent DNA ligase domain RAM_21375 PF13298 DNA polymerase Ligase (LigD) RAM_21395 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_21395 PF00440 Bacterial regulatory proteins, tetR family RAM_21405 PF12146 Serine aminopeptidase, S33 RAM_21440 PF02146 Sir2 family RAM_21455 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_21455 PF13192 Thioredoxin domain RAM_21460 PF01381 Helix-turn-helix RAM_21475 PF03143 Elongation factor Tu C-terminal domain RAM_21475 PF03144 Elongation factor Tu domain 2 RAM_21475 PF00009 Elongation factor Tu GTP binding domain RAM_21490 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation RAM_21490 PF01118 Semialdehyde dehydrogenase, NAD binding domain RAM_21495 PF07836 DmpG-like communication domain RAM_21495 PF00682 HMGL-like RAM_21505 PF01494 FAD binding domain RAM_21510 PF17754 MftR C-terminal domain RAM_21510 PF00440 Bacterial regulatory proteins, tetR family RAM_21520 PF01425 Amidase RAM_21525 PF00144 Beta-lactamase RAM_21535 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_21535 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RAM_21545 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA RAM_21550 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RAM_21550 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_21555 PF04545 Sigma-70, region 4 RAM_21555 PF04542 Sigma-70 region 2 RAM_21560 PF13649 Methyltransferase domain RAM_21560 PF17827 PrmC N-terminal domain RAM_21575 PF01037 Lrp/AsnC ligand binding domain RAM_21580 PF00202 Aminotransferase class-III RAM_21585 PF00067 Cytochrome P450 RAM_21595 PF01339 CheB methylesterase RAM_21595 PF00072 Response regulator receiver domain RAM_21615 PF00069 Protein kinase domain RAM_21615 PF03793 PASTA domain RAM_21625 PF00183 Hsp90 protein RAM_21635 PF00127 Copper binding proteins, plastocyanin/azurin family RAM_21670 PF05139 Erythromycin esterase RAM_21670 PF00156 Phosphoribosyl transferase domain RAM_21720 PF00171 Aldehyde dehydrogenase family RAM_21740 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RAM_21740 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RAM_21740 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RAM_21750 PF00106 short chain dehydrogenase RAM_21755 PF01467 Cytidylyltransferase-like RAM_21755 PF00294 pfkB family carbohydrate kinase RAM_21760 PF13580 SIS domain RAM_21765 PF16861 Carbamoyltransferase C-terminus RAM_21765 PF02543 Carbamoyltransferase N-terminus RAM_21770 PF01370 NAD dependent epimerase/dehydratase family RAM_21785 PF00535 Glycosyl transferase family 2 RAM_21785 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase RAM_21790 PF13439 Glycosyltransferase Family 4 RAM_21790 PF00534 Glycosyl transferases group 1 RAM_21805 PF01384 Phosphate transporter family RAM_21810 PF08240 Alcohol dehydrogenase GroES-like domain RAM_21810 PF13823 Alcohol dehydrogenase GroES-associated RAM_21810 PF00107 Zinc-binding dehydrogenase RAM_21815 PF09168 X-Prolyl dipeptidyl aminopeptidase PepX, N-terminal RAM_21815 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_21815 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_21835 PF03631 Virulence factor BrkB RAM_21860 PF01266 FAD dependent oxidoreductase RAM_21860 PF00355 Rieske [2Fe-2S] domain RAM_21865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_21865 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RAM_21865 PF02142 MGS-like domain RAM_21875 PF17827 PrmC N-terminal domain RAM_21875 PF05175 Methyltransferase small domain RAM_21890 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_21900 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_21910 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RAM_21910 PF01276 Orn/Lys/Arg decarboxylase, major domain RAM_21920 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RAM_21925 PF00296 Luciferase-like monooxygenase RAM_21930 PF00528 Binding-protein-dependent transport system inner membrane component RAM_21935 PF00005 ABC transporter RAM_21955 PF06441 Epoxide hydrolase N terminus RAM_21965 PF00196 Bacterial regulatory proteins, luxR family RAM_21970 PF01494 FAD binding domain RAM_21975 PF01230 HIT domain RAM_21980 PF13556 PucR C-terminal helix-turn-helix domain RAM_21980 PF17853 GGDEF-like domain RAM_21980 PF05651 Putative sugar diacid recognition RAM_22005 PF02954 Bacterial regulatory protein, Fis family RAM_22015 PF02332 Methane/Phenol/Toluene Hydroxylase RAM_22020 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_22020 PF00970 Oxidoreductase FAD-binding domain RAM_22020 PF00175 Oxidoreductase NAD-binding domain RAM_22025 PF02332 Methane/Phenol/Toluene Hydroxylase RAM_22030 PF02406 MmoB/DmpM family RAM_22050 PF00118 TCP-1/cpn60 chaperonin family RAM_22060 PF03704 Bacterial transcriptional activator domain RAM_22060 PF00931 NB-ARC domain RAM_22060 PF00486 Transcriptional regulatory protein, C terminal RAM_22075 PF00440 Bacterial regulatory proteins, tetR family RAM_22080 PF06441 Epoxide hydrolase N terminus RAM_22090 PF13409 Glutathione S-transferase, N-terminal domain RAM_22100 PF04264 YceI-like domain RAM_22105 PF00440 Bacterial regulatory proteins, tetR family RAM_22120 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22135 PF00356 Bacterial regulatory proteins, lacI family RAM_22145 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_22145 PF07691 PA14 domain RAM_22145 PF14310 Fibronectin type III-like domain RAM_22145 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_22155 PF00067 Cytochrome P450 RAM_22165 PF00563 EAL domain RAM_22165 PF00990 Diguanylate cyclase, GGDEF domain RAM_22165 PF00498 FHA domain RAM_22180 PF13183 4Fe-4S dicluster domain RAM_22180 PF02754 Cysteine-rich domain RAM_22180 PF02665 Nitrate reductase gamma subunit RAM_22185 PF00498 FHA domain RAM_22185 PF12401 Protein of unknown function (DUF2662) RAM_22195 PF07690 Major Facilitator Superfamily RAM_22195 PF00083 Sugar (and other) transporter RAM_22205 PF08501 Shikimate dehydrogenase substrate binding domain RAM_22205 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RAM_22225 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22230 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_22285 PF08281 Sigma-70, region 4 RAM_22285 PF04542 Sigma-70 region 2 RAM_22295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_22295 PF13492 GAF domain RAM_22295 PF13185 GAF domain RAM_22295 PF07730 Histidine kinase RAM_22300 PF00196 Bacterial regulatory proteins, luxR family RAM_22300 PF00072 Response regulator receiver domain RAM_22320 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_22320 PF14759 Reductase C-terminal RAM_22325 PF01227 GTP cyclohydrolase I RAM_22340 PF00356 Bacterial regulatory proteins, lacI family RAM_22365 PF00106 short chain dehydrogenase RAM_22370 PF00553 Cellulose binding domain RAM_22370 PF00041 Fibronectin type III domain RAM_22370 PF00704 Glycosyl hydrolases family 18 RAM_22380 PF07943 Penicillin-binding protein 5, C-terminal domain RAM_22380 PF00768 D-alanyl-D-alanine carboxypeptidase RAM_22390 PF00356 Bacterial regulatory proteins, lacI family RAM_22395 PF13407 Periplasmic binding protein domain RAM_22400 PF00005 ABC transporter RAM_22405 PF02653 Branched-chain amino acid transport system / permease component RAM_22410 PF02653 Branched-chain amino acid transport system / permease component RAM_22415 PF02018 Carbohydrate binding domain RAM_22415 PF06964 Alpha-L-arabinofuranosidase C-terminal domain RAM_22420 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_22420 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_22425 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_22430 PF02610 L-arabinose isomerase RAM_22430 PF11762 L-arabinose isomerase C-terminal domain RAM_22435 PF13407 Periplasmic binding protein domain RAM_22440 PF00005 ABC transporter RAM_22445 PF02653 Branched-chain amino acid transport system / permease component RAM_22455 PF00356 Bacterial regulatory proteins, lacI family RAM_22460 PF00067 Cytochrome P450 RAM_22465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_22465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_22470 PF09339 IclR helix-turn-helix domain RAM_22470 PF01614 Bacterial transcriptional regulator RAM_22475 PF00230 Major intrinsic protein RAM_22480 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_22480 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_22485 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RAM_22485 PF01266 FAD dependent oxidoreductase RAM_22495 PF00764 Arginosuccinate synthase RAM_22500 PF09277 Erythronolide synthase, docking RAM_22500 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_22500 PF16197 Ketoacyl-synthetase C-terminal extension RAM_22500 PF00698 Acyl transferase domain RAM_22500 PF00550 Phosphopantetheine attachment site RAM_22500 PF08659 KR domain RAM_22500 PF08990 Erythronolide synthase docking RAM_22500 PF14765 Polyketide synthase dehydratase RAM_22500 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_22500 PF08240 Alcohol dehydrogenase GroES-like domain RAM_22535 PF00144 Beta-lactamase RAM_22540 PF01565 FAD binding domain RAM_22540 PF04030 D-arabinono-1,4-lactone oxidase RAM_22545 PF00356 Bacterial regulatory proteins, lacI family RAM_22555 PF13416 Bacterial extracellular solute-binding protein RAM_22560 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22565 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22575 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_22575 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_22580 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_22580 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_22590 PF00544 Pectate lyase RAM_22595 PF03211 Pectate lyase RAM_22600 PF01095 Pectinesterase RAM_22605 PF04616 Glycosyl hydrolases family 43 RAM_22620 PF03704 Bacterial transcriptional activator domain RAM_22620 PF00931 NB-ARC domain RAM_22620 PF00486 Transcriptional regulatory protein, C terminal RAM_22635 PF00582 Universal stress protein family RAM_22640 PF01478 Type IV leader peptidase family RAM_22640 PF06750 Bacterial Peptidase A24 N-terminal domain RAM_22660 PF00482 Type II secretion system (T2SS), protein F RAM_22665 PF00437 Type II/IV secretion system protein RAM_22670 PF00437 Type II/IV secretion system protein RAM_22675 PF08334 Type II secretion system (T2SS), protein G RAM_22675 PF07963 Prokaryotic N-terminal methylation motif RAM_22700 PF08338 Domain of unknown function (DUF1731) RAM_22700 PF01370 NAD dependent epimerase/dehydratase family RAM_22710 PF07859 alpha/beta hydrolase fold RAM_22715 PF00107 Zinc-binding dehydrogenase RAM_22715 PF08240 Alcohol dehydrogenase GroES-like domain RAM_22730 PF00483 Nucleotidyl transferase RAM_22735 PF00534 Glycosyl transferases group 1 RAM_22735 PF13439 Glycosyltransferase Family 4 RAM_22745 PF01740 STAS domain RAM_22760 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain RAM_22760 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_22760 PF00703 Glycosyl hydrolases family 2 RAM_22760 PF16990 Carbohydrate binding module (family 35) RAM_22770 PF13556 PucR C-terminal helix-turn-helix domain RAM_22770 PF17853 GGDEF-like domain RAM_22775 PF00679 Elongation factor G C-terminus RAM_22775 PF00009 Elongation factor Tu GTP binding domain RAM_22775 PF14492 Elongation Factor G, domain II RAM_22775 PF03144 Elongation factor Tu domain 2 RAM_22775 PF03764 Elongation factor G, domain IV RAM_22780 PF00266 Aminotransferase class-V RAM_22790 PF09594 Glycosyltransferase family 87 RAM_22805 PF01494 FAD binding domain RAM_22820 PF07690 Major Facilitator Superfamily RAM_22825 PF00698 Acyl transferase domain RAM_22825 PF16197 Ketoacyl-synthetase C-terminal extension RAM_22825 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_22825 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_22825 PF08659 KR domain RAM_22825 PF14765 Polyketide synthase dehydratase RAM_22825 PF00550 Phosphopantetheine attachment site RAM_22830 PF00501 AMP-binding enzyme RAM_22845 PF00106 short chain dehydrogenase RAM_22850 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_22850 PF03033 Glycosyltransferase family 28 N-terminal domain RAM_22860 PF04679 ATP dependent DNA ligase C terminal region RAM_22860 PF01068 ATP dependent DNA ligase domain RAM_22860 PF13298 DNA polymerase Ligase (LigD) RAM_22870 PF01513 ATP-NAD kinase RAM_22875 PF00743 Flavin-binding monooxygenase-like RAM_22880 PF00106 short chain dehydrogenase RAM_22885 PF00561 alpha/beta hydrolase fold RAM_22890 PF00067 Cytochrome P450 RAM_22900 PF00931 NB-ARC domain RAM_22900 PF03704 Bacterial transcriptional activator domain RAM_22900 PF00486 Transcriptional regulatory protein, C terminal RAM_22905 PF00381 PTS HPr component phosphorylation site RAM_22910 PF02378 Phosphotransferase system, EIIC RAM_22910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RAM_22915 PF00391 PEP-utilising enzyme, mobile domain RAM_22915 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RAM_22915 PF05524 PEP-utilising enzyme, N-terminal RAM_22915 PF00381 PTS HPr component phosphorylation site RAM_22915 PF02896 PEP-utilising enzyme, TIM barrel domain RAM_22920 PF00294 pfkB family carbohydrate kinase RAM_22930 PF02896 PEP-utilising enzyme, TIM barrel domain RAM_22930 PF00391 PEP-utilising enzyme, mobile domain RAM_22930 PF05524 PEP-utilising enzyme, N-terminal RAM_22935 PF00899 ThiF family RAM_22950 PF14310 Fibronectin type III-like domain RAM_22950 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_22950 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_22955 PF00356 Bacterial regulatory proteins, lacI family RAM_22965 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22970 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22980 PF00356 Bacterial regulatory proteins, lacI family RAM_22985 PF00553 Cellulose binding domain RAM_22985 PF00331 Glycosyl hydrolase family 10 RAM_22990 PF00457 Glycosyl hydrolases family 11 RAM_22990 PF01522 Polysaccharide deacetylase RAM_23000 PF00313 'Cold-shock' DNA-binding domain RAM_23045 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RAM_23045 PF00672 HAMP domain RAM_23045 PF00512 His Kinase A (phospho-acceptor) domain RAM_23045 PF01627 Hpt domain RAM_23045 PF00072 Response regulator receiver domain RAM_23045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_23055 PF01699 Sodium/calcium exchanger protein RAM_23060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_23060 PF03466 LysR substrate binding domain RAM_23065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_23065 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_23065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_23095 PF04389 Peptidase family M28 RAM_23095 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_23095 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_23105 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_23105 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_23105 PF00703 Glycosyl hydrolases family 2 RAM_23105 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 RAM_23110 PF00356 Bacterial regulatory proteins, lacI family RAM_23115 PF00005 ABC transporter RAM_23120 PF02653 Branched-chain amino acid transport system / permease component RAM_23125 PF02653 Branched-chain amino acid transport system / permease component RAM_23135 PF05336 L-rhamnose mutarotase RAM_23145 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_23155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_23155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_23160 PF00196 Bacterial regulatory proteins, luxR family RAM_23165 PF07730 Histidine kinase RAM_23165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_23175 PF00356 Bacterial regulatory proteins, lacI family RAM_23180 PF16990 Carbohydrate binding module (family 35) RAM_23180 PF00703 Glycosyl hydrolases family 2 RAM_23180 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_23180 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain RAM_23235 PF11799 impB/mucB/samB family C-terminal domain RAM_23235 PF00817 impB/mucB/samB family RAM_23240 PF04072 Leucine carboxyl methyltransferase RAM_23245 PF11774 Lsr2 RAM_23255 PF02634 FdhD/NarQ family RAM_23260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_23260 PF03466 LysR substrate binding domain RAM_23265 PF02629 CoA binding domain RAM_23265 PF00549 CoA-ligase RAM_23270 PF00549 CoA-ligase RAM_23270 PF08442 ATP-grasp domain RAM_23275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_23275 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_23275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_23280 PF02515 CoA-transferase family III RAM_23285 PF00583 Acetyltransferase (GNAT) family RAM_23285 PF13380 CoA binding domain RAM_23285 PF13607 Succinyl-CoA ligase like flavodoxin domain RAM_23290 PF07690 Major Facilitator Superfamily RAM_23295 PF07729 FCD domain RAM_23295 PF00392 Bacterial regulatory proteins, gntR family RAM_23300 PF08546 Ketopantoate reductase PanE/ApbA C terminal RAM_23300 PF02558 Ketopantoate reductase PanE/ApbA RAM_23305 PF00384 Molybdopterin oxidoreductase RAM_23305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_23305 PF01568 Molydopterin dinucleotide binding domain RAM_23310 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RAM_23310 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_23310 PF10531 SLBB domain RAM_23315 PF01568 Molydopterin dinucleotide binding domain RAM_23315 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_23315 PF00384 Molybdopterin oxidoreductase RAM_23315 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RAM_23320 PF01261 Xylose isomerase-like TIM barrel RAM_23325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_23325 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_23330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_23330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_23330 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_23335 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_23335 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_23340 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_23340 PF01799 [2Fe-2S] binding domain RAM_23345 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_23345 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_23350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_23355 PF00860 Permease family RAM_23365 PF02595 Glycerate kinase family RAM_23375 PF00723 Glycosyl hydrolases family 15 RAM_23375 PF09137 Glucodextranase, domain N RAM_23390 PF00293 NUDIX domain RAM_23390 PF03099 Biotin/lipoate A/B protein ligase family RAM_23395 PF01494 FAD binding domain RAM_23400 PF00440 Bacterial regulatory proteins, tetR family RAM_23405 PF02929 Beta galactosidase small chain RAM_23405 PF16353 Domain of unknown function(DUF4981) RAM_23405 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_23405 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_23410 PF00356 Bacterial regulatory proteins, lacI family RAM_23415 PF00324 Amino acid permease RAM_23420 PF04960 Glutaminase RAM_23435 PF00291 Pyridoxal-phosphate dependent enzyme RAM_23440 PF00698 Acyl transferase domain RAM_23440 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_23440 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_23440 PF08659 KR domain RAM_23440 PF00550 Phosphopantetheine attachment site RAM_23440 PF16197 Ketoacyl-synthetase C-terminal extension RAM_23445 PF00698 Acyl transferase domain RAM_23445 PF08240 Alcohol dehydrogenase GroES-like domain RAM_23445 PF00107 Zinc-binding dehydrogenase RAM_23445 PF16197 Ketoacyl-synthetase C-terminal extension RAM_23445 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_23445 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_23445 PF00550 Phosphopantetheine attachment site RAM_23445 PF14765 Polyketide synthase dehydratase RAM_23445 PF08659 KR domain RAM_23450 PF00550 Phosphopantetheine attachment site RAM_23455 PF12697 Alpha/beta hydrolase family RAM_23470 PF07690 Major Facilitator Superfamily RAM_23480 PF04679 ATP dependent DNA ligase C terminal region RAM_23480 PF01068 ATP dependent DNA ligase domain RAM_23480 PF13298 DNA polymerase Ligase (LigD) RAM_23485 PF02803 Thiolase, C-terminal domain RAM_23485 PF00108 Thiolase, N-terminal domain RAM_23490 PF01638 HxlR-like helix-turn-helix RAM_23500 PF00704 Glycosyl hydrolases family 18 RAM_23500 PF00041 Fibronectin type III domain RAM_23505 PF08485 Polysaccharide biosynthesis protein C-terminal RAM_23505 PF02719 Polysaccharide biosynthesis protein RAM_23520 PF03466 LysR substrate binding domain RAM_23520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_23535 PF02515 CoA-transferase family III RAM_23540 PF02515 CoA-transferase family III RAM_23545 PF00356 Bacterial regulatory proteins, lacI family RAM_23555 PF07687 Peptidase dimerisation domain RAM_23555 PF01546 Peptidase family M20/M25/M40 RAM_23560 PF12697 Alpha/beta hydrolase family RAM_23595 PF00248 Aldo/keto reductase family RAM_23600 PF00296 Luciferase-like monooxygenase RAM_23605 PF02673 Bacitracin resistance protein BacA RAM_23615 PF01432 Peptidase family M3 RAM_23620 PF00574 Clp protease RAM_23625 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RAM_23625 PF00056 lactate/malate dehydrogenase, NAD binding domain RAM_23660 PF07971 Glycosyl hydrolase family 92 RAM_23660 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_23665 PF07519 Tannase and feruloyl esterase RAM_23690 PF07687 Peptidase dimerisation domain RAM_23690 PF01546 Peptidase family M20/M25/M40 RAM_23700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_23705 PF00528 Binding-protein-dependent transport system inner membrane component RAM_23715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_23715 PF00005 ABC transporter RAM_23730 PF17676 LD-carboxypeptidase C-terminal domain RAM_23730 PF02016 LD-carboxypeptidase N-terminal domain RAM_23735 PF07676 WD40-like Beta Propeller Repeat RAM_23735 PF00326 Prolyl oligopeptidase family RAM_23770 PF01145 SPFH domain / Band 7 family RAM_23795 PF07690 Major Facilitator Superfamily RAM_23795 PF00083 Sugar (and other) transporter RAM_23805 PF01494 FAD binding domain RAM_23815 PF01022 Bacterial regulatory protein, arsR family RAM_23825 PF00440 Bacterial regulatory proteins, tetR family RAM_23870 PF04542 Sigma-70 region 2 RAM_23870 PF08281 Sigma-70, region 4 RAM_23900 PF00440 Bacterial regulatory proteins, tetR family RAM_23905 PF12833 Helix-turn-helix domain RAM_23905 PF12852 Cupin RAM_23935 PF04542 Sigma-70 region 2 RAM_23935 PF08281 Sigma-70, region 4 RAM_23945 PF00067 Cytochrome P450 RAM_23955 PF00005 ABC transporter RAM_23955 PF13732 Domain of unknown function (DUF4162) RAM_23965 PF12419 SNF2 Helicase protein RAM_23965 PF00271 Helicase conserved C-terminal domain RAM_23965 PF00176 SNF2 family N-terminal domain RAM_23975 PF01494 FAD binding domain RAM_23980 PF00440 Bacterial regulatory proteins, tetR family RAM_23990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_23990 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_23990 PF18158 Adaptive response protein AidB N-terminal domain RAM_23995 PF00440 Bacterial regulatory proteins, tetR family RAM_23995 PF17925 Tetracyclin repressor-like, C-terminal domain RAM_24010 PF07883 Cupin domain RAM_24010 PF01381 Helix-turn-helix RAM_24035 PF02899 Phage integrase, N-terminal SAM-like domain RAM_24035 PF00589 Phage integrase family RAM_24060 PF00265 Thymidine kinase RAM_24065 PF13397 RNA polymerase-binding protein RAM_24070 PF00293 NUDIX domain RAM_24080 PF02585 GlcNAc-PI de-N-acetylase RAM_24085 PF00535 Glycosyl transferase family 2 RAM_24090 PF00795 Carbon-nitrogen hydrolase RAM_24090 PF00535 Glycosyl transferase family 2 RAM_24095 PF01979 Amidohydrolase family RAM_24100 PF04055 Radical SAM superfamily RAM_24100 PF12544 Lysine-2,3-aminomutase RAM_24120 PF01965 DJ-1/PfpI family RAM_24120 PF12833 Helix-turn-helix domain RAM_24125 PF01638 HxlR-like helix-turn-helix RAM_24145 PF03704 Bacterial transcriptional activator domain RAM_24145 PF00931 NB-ARC domain RAM_24145 PF00486 Transcriptional regulatory protein, C terminal RAM_24155 PF13575 Domain of unknown function (DUF4135) RAM_24155 PF05147 Lanthionine synthetase C-like protein RAM_24165 PF00498 FHA domain RAM_24165 PF00486 Transcriptional regulatory protein, C terminal RAM_24165 PF03704 Bacterial transcriptional activator domain RAM_24170 PF00156 Phosphoribosyl transferase domain RAM_24180 PF06368 Methylaspartate mutase E chain (MutE) RAM_24185 PF00152 tRNA synthetases class II (D, K and N) RAM_24185 PF01336 OB-fold nucleic acid binding domain RAM_24190 PF01645 Conserved region in glutamate synthase RAM_24195 PF00668 Condensation domain RAM_24195 PF00550 Phosphopantetheine attachment site RAM_24195 PF13193 AMP-binding enzyme C-terminal domain RAM_24195 PF00501 AMP-binding enzyme RAM_24205 PF01063 Amino-transferase class IV RAM_24215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_24215 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_24215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_24220 PF00196 Bacterial regulatory proteins, luxR family RAM_24225 PF01212 Beta-eliminating lyase RAM_24230 PF00206 Lyase RAM_24230 PF02655 ATP-grasp domain RAM_24235 PF02655 ATP-grasp domain RAM_24235 PF00206 Lyase RAM_24240 PF00571 CBS domain RAM_24240 PF00291 Pyridoxal-phosphate dependent enzyme RAM_24245 PF00975 Thioesterase domain RAM_24255 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_24255 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_24260 PF00550 Phosphopantetheine attachment site RAM_24260 PF00698 Acyl transferase domain RAM_24260 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_24260 PF16197 Ketoacyl-synthetase C-terminal extension RAM_24260 PF00668 Condensation domain RAM_24260 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_24265 PF13193 AMP-binding enzyme C-terminal domain RAM_24265 PF00668 Condensation domain RAM_24265 PF00501 AMP-binding enzyme RAM_24265 PF00550 Phosphopantetheine attachment site RAM_24270 PF03621 MbtH-like protein RAM_24275 PF00550 Phosphopantetheine attachment site RAM_24275 PF07993 Male sterility protein RAM_24275 PF00501 AMP-binding enzyme RAM_24275 PF13193 AMP-binding enzyme C-terminal domain RAM_24275 PF00668 Condensation domain RAM_24280 PF13193 AMP-binding enzyme C-terminal domain RAM_24280 PF00501 AMP-binding enzyme RAM_24280 PF00975 Thioesterase domain RAM_24280 PF00668 Condensation domain RAM_24280 PF00550 Phosphopantetheine attachment site RAM_24295 PF01546 Peptidase family M20/M25/M40 RAM_24295 PF07687 Peptidase dimerisation domain RAM_24305 PF00155 Aminotransferase class I and II RAM_24310 PF00196 Bacterial regulatory proteins, luxR family RAM_24315 PF03466 LysR substrate binding domain RAM_24315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_24320 PF01494 FAD binding domain RAM_24325 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_24325 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_24365 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_24365 PF13378 Enolase C-terminal domain-like RAM_24370 PF00392 Bacterial regulatory proteins, gntR family RAM_24370 PF07729 FCD domain RAM_24375 PF00528 Binding-protein-dependent transport system inner membrane component RAM_24380 PF00528 Binding-protein-dependent transport system inner membrane component RAM_24390 PF13340 Putative transposase of IS4/5 family (DUF4096) RAM_24400 PF03621 MbtH-like protein RAM_24405 PF00975 Thioesterase domain RAM_24405 PF00550 Phosphopantetheine attachment site RAM_24405 PF00668 Condensation domain RAM_24405 PF13193 AMP-binding enzyme C-terminal domain RAM_24405 PF00501 AMP-binding enzyme RAM_24410 PF00291 Pyridoxal-phosphate dependent enzyme RAM_24415 PF02423 Ornithine cyclodeaminase/mu-crystallin family RAM_24420 PF02310 B12 binding domain RAM_24425 PF06368 Methylaspartate mutase E chain (MutE) RAM_24435 PF13193 AMP-binding enzyme C-terminal domain RAM_24435 PF00668 Condensation domain RAM_24435 PF00975 Thioesterase domain RAM_24435 PF00550 Phosphopantetheine attachment site RAM_24435 PF00501 AMP-binding enzyme RAM_24455 PF00501 AMP-binding enzyme RAM_24455 PF13193 AMP-binding enzyme C-terminal domain RAM_24455 PF00668 Condensation domain RAM_24455 PF00550 Phosphopantetheine attachment site RAM_24460 PF03704 Bacterial transcriptional activator domain RAM_24460 PF00931 NB-ARC domain RAM_24460 PF00486 Transcriptional regulatory protein, C terminal RAM_24470 PF03704 Bacterial transcriptional activator domain RAM_24470 PF00486 Transcriptional regulatory protein, C terminal RAM_24470 PF00931 NB-ARC domain RAM_24480 PF09278 MerR, DNA binding RAM_24480 PF00376 MerR family regulatory protein RAM_24520 PF03664 Glycosyl hydrolase family 62 RAM_24520 PF00652 Ricin-type beta-trefoil lectin domain RAM_24530 PF00067 Cytochrome P450 RAM_24550 PF12706 Beta-lactamase superfamily domain RAM_24565 PF00196 Bacterial regulatory proteins, luxR family RAM_24565 PF00072 Response regulator receiver domain RAM_24570 PF00196 Bacterial regulatory proteins, luxR family RAM_24570 PF00072 Response regulator receiver domain RAM_24580 PF07676 WD40-like Beta Propeller Repeat RAM_24580 PF04052 TolB amino-terminal domain RAM_24665 PF16450 Proteasomal ATPase OB C-terminal domain RAM_24665 PF17758 Proteasomal ATPase OB N-terminal domain RAM_24665 PF00004 ATPase family associated with various cellular activities (AAA) RAM_24690 PF01979 Amidohydrolase family RAM_24695 PF01614 Bacterial transcriptional regulator RAM_24695 PF09339 IclR helix-turn-helix domain RAM_24700 PF02515 CoA-transferase family III RAM_24710 PF00775 Dioxygenase RAM_24710 PF04444 Catechol dioxygenase N terminus RAM_24730 PF02839 Carbohydrate binding domain RAM_24740 PF00005 ABC transporter RAM_24750 PF01494 FAD binding domain RAM_24760 PF00106 short chain dehydrogenase RAM_24765 PF03466 LysR substrate binding domain RAM_24765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_24775 PF02525 Flavodoxin-like fold RAM_24780 PF00440 Bacterial regulatory proteins, tetR family RAM_24800 PF01037 Lrp/AsnC ligand binding domain RAM_24805 PF01321 Creatinase/Prolidase N-terminal domain RAM_24805 PF00557 Metallopeptidase family M24 RAM_24810 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RAM_24810 PF01367 5'-3' exonuclease, C-terminal SAM fold RAM_24815 PF13530 Sterol carrier protein domain RAM_24815 PF17668 Acetyltransferase (GNAT) domain RAM_24820 PF13530 Sterol carrier protein domain RAM_24820 PF17668 Acetyltransferase (GNAT) domain RAM_24830 PF08148 DSHCT (NUC185) domain RAM_24830 PF00271 Helicase conserved C-terminal domain RAM_24830 PF00270 DEAD/DEAH box helicase RAM_24840 PF00781 Diacylglycerol kinase catalytic domain RAM_24845 PF00902 Sec-independent protein translocase protein (TatC) RAM_24850 PF02416 mttA/Hcf106 family RAM_24860 PF13280 WYL domain RAM_24865 PF13280 WYL domain RAM_24870 PF01638 HxlR-like helix-turn-helix RAM_24880 PF00106 short chain dehydrogenase RAM_24890 PF03136 Pup-ligase protein RAM_24905 PF00227 Proteasome subunit RAM_24910 PF00227 Proteasome subunit RAM_24915 PF05639 Pup-like protein RAM_24920 PF03136 Pup-ligase protein RAM_24925 PF00293 NUDIX domain RAM_24960 PF00892 EamA-like transporter family RAM_24965 PF17758 Proteasomal ATPase OB N-terminal domain RAM_24965 PF00004 ATPase family associated with various cellular activities (AAA) RAM_24965 PF16450 Proteasomal ATPase OB C-terminal domain RAM_24985 PF08704 tRNA methyltransferase complex GCD14 subunit RAM_24990 PF02163 Peptidase family M50 RAM_24990 PF00571 CBS domain RAM_25005 PF13614 AAA domain RAM_25010 PF08029 HisG, C-terminal domain RAM_25010 PF01634 ATP phosphoribosyltransferase RAM_25015 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RAM_25020 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RAM_25020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_25025 PF06029 AlkA N-terminal domain RAM_25025 PF00730 HhH-GPD superfamily base excision DNA repair protein RAM_25025 PF12833 Helix-turn-helix domain RAM_25025 PF02805 Metal binding domain of Ada RAM_25030 PF13419 Haloacid dehalogenase-like hydrolase RAM_25035 PF02574 Homocysteine S-methyltransferase RAM_25035 PF02607 B12 binding domain RAM_25035 PF02310 B12 binding domain RAM_25035 PF00809 Pterin binding enzyme RAM_25035 PF02965 Vitamin B12 dependent methionine synthase, activation domain RAM_25050 PF02126 Phosphotriesterase family RAM_25070 PF00144 Beta-lactamase RAM_25075 PF07690 Major Facilitator Superfamily RAM_25090 PF00005 ABC transporter RAM_25095 PF01406 tRNA synthetases class I (C) catalytic domain RAM_25100 PF13411 MerR HTH family regulatory protein RAM_25100 PF07739 TipAS antibiotic-recognition domain RAM_25105 PF13382 Adenine deaminase C-terminal domain RAM_25105 PF01979 Amidohydrolase family RAM_25115 PF17863 AAA lid domain RAM_25115 PF01078 Magnesium chelatase, subunit ChlI RAM_25145 PF07690 Major Facilitator Superfamily RAM_25160 PF00083 Sugar (and other) transporter RAM_25165 PF00072 Response regulator receiver domain RAM_25165 PF00486 Transcriptional regulatory protein, C terminal RAM_25170 PF00512 His Kinase A (phospho-acceptor) domain RAM_25170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_25170 PF00672 HAMP domain RAM_25185 PF00588 SpoU rRNA Methylase family RAM_25195 PF07584 Aerotolerance regulator N-terminal RAM_25195 PF13519 von Willebrand factor type A domain RAM_25200 PF01882 Protein of unknown function DUF58 RAM_25205 PF17863 AAA lid domain RAM_25205 PF07726 ATPase family associated with various cellular activities (AAA) RAM_25210 PF12804 MobA-like NTP transferase domain RAM_25220 PF00877 NlpC/P60 family RAM_25225 PF00330 Aconitase family (aconitate hydratase) RAM_25225 PF00694 Aconitase C-terminal domain RAM_25230 PF02308 MgtC family RAM_25240 PF00440 Bacterial regulatory proteins, tetR family RAM_25245 PF00561 alpha/beta hydrolase fold RAM_25255 PF10017 Histidine-specific methyltransferase, SAM-dependent RAM_25265 PF12867 DinB superfamily RAM_25265 PF03781 Sulfatase-modifying factor enzyme 1 RAM_25270 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_25280 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_25280 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RAM_25285 PF00561 alpha/beta hydrolase fold RAM_25310 PF00440 Bacterial regulatory proteins, tetR family RAM_25315 PF01595 Cyclin M transmembrane N-terminal domain RAM_25315 PF03471 Transporter associated domain RAM_25315 PF00571 CBS domain RAM_25320 PF01595 Cyclin M transmembrane N-terminal domain RAM_25320 PF00571 CBS domain RAM_25335 PF00248 Aldo/keto reductase family RAM_25350 PF01370 NAD dependent epimerase/dehydratase family RAM_25360 PF00535 Glycosyl transferase family 2 RAM_25365 PF16363 GDP-mannose 4,6 dehydratase RAM_25370 PF02347 Glycine cleavage system P-protein RAM_25375 PF13411 MerR HTH family regulatory protein RAM_25385 PF00085 Thioredoxin RAM_25390 PF13411 MerR HTH family regulatory protein RAM_25395 PF02577 Bifunctional nuclease RAM_25400 PF00376 MerR family regulatory protein RAM_25405 PF00498 FHA domain RAM_25410 PF01597 Glycine cleavage H-protein RAM_25435 PF13193 AMP-binding enzyme C-terminal domain RAM_25435 PF00501 AMP-binding enzyme RAM_25440 PF00378 Enoyl-CoA hydratase/isomerase RAM_25445 PF00561 alpha/beta hydrolase fold RAM_25450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_25450 PF10414 Sirohaem synthase dimerisation region RAM_25465 PF00253 Ribosomal protein S14p/S29e RAM_25470 PF00471 Ribosomal protein L33 RAM_25480 PF01197 Ribosomal protein L31 RAM_25485 PF01783 Ribosomal L32p protein family RAM_25505 PF01738 Dienelactone hydrolase family RAM_25515 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_25525 PF00296 Luciferase-like monooxygenase RAM_25560 PF00296 Luciferase-like monooxygenase RAM_25570 PF00005 ABC transporter RAM_25575 PF00528 Binding-protein-dependent transport system inner membrane component RAM_25580 PF00753 Metallo-beta-lactamase superfamily RAM_25580 PF16123 Hydroxyacylglutathione hydrolase C-terminus RAM_25585 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RAM_25585 PF01409 tRNA synthetases class II core domain (F) RAM_25605 PF00005 ABC transporter RAM_25605 PF00664 ABC transporter transmembrane region RAM_25610 PF00005 ABC transporter RAM_25610 PF00664 ABC transporter transmembrane region RAM_25615 PF03621 MbtH-like protein RAM_25625 PF02261 Aspartate decarboxylase RAM_25630 PF00668 Condensation domain RAM_25630 PF00550 Phosphopantetheine attachment site RAM_25630 PF00501 AMP-binding enzyme RAM_25630 PF13193 AMP-binding enzyme C-terminal domain RAM_25635 PF01032 FecCD transport family RAM_25640 PF01032 FecCD transport family RAM_25645 PF00005 ABC transporter RAM_25655 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RAM_25660 PF00551 Formyl transferase RAM_25660 PF02911 Formyl transferase, C-terminal domain RAM_25660 PF01370 NAD dependent epimerase/dehydratase family RAM_25670 PF16874 Glycosyl hydrolase family 36 C-terminal domain RAM_25670 PF16875 Glycosyl hydrolase family 36 N-terminal domain RAM_25680 PF00528 Binding-protein-dependent transport system inner membrane component RAM_25690 PF12848 ABC transporter RAM_25690 PF00005 ABC transporter RAM_25700 PF00378 Enoyl-CoA hydratase/isomerase RAM_25705 PF00041 Fibronectin type III domain RAM_25705 PF00553 Cellulose binding domain RAM_25705 PF00704 Glycosyl hydrolases family 18 RAM_25710 PF00589 Phage integrase family RAM_25735 PF13340 Putative transposase of IS4/5 family (DUF4096) RAM_25750 PF00589 Phage integrase family RAM_25780 PF00149 Calcineurin-like phosphoesterase RAM_25780 PF16656 Purple acid Phosphatase, N-terminal domain RAM_25785 PF00722 Glycosyl hydrolases family 16 RAM_25790 PF00553 Cellulose binding domain RAM_25790 PF00331 Glycosyl hydrolase family 10 RAM_25795 PF01047 MarR family RAM_25795 PF00480 ROK family RAM_25800 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_25800 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_25805 PF00703 Glycosyl hydrolases family 2 RAM_25805 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_25805 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain RAM_25810 PF01270 Glycosyl hydrolases family 8 RAM_25825 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_25825 PF13378 Enolase C-terminal domain-like RAM_25830 PF00356 Bacterial regulatory proteins, lacI family RAM_25835 PF13378 Enolase C-terminal domain-like RAM_25835 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_25840 PF00528 Binding-protein-dependent transport system inner membrane component RAM_25850 PF00005 ABC transporter RAM_25855 PF00672 HAMP domain RAM_25855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_25855 PF00512 His Kinase A (phospho-acceptor) domain RAM_25860 PF00486 Transcriptional regulatory protein, C terminal RAM_25860 PF00072 Response regulator receiver domain RAM_25880 PF00561 alpha/beta hydrolase fold RAM_25885 PF07690 Major Facilitator Superfamily RAM_25890 PF01047 MarR family RAM_25895 PF00230 Major intrinsic protein RAM_25905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_25905 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_25905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_25910 PF01738 Dienelactone hydrolase family RAM_25920 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_25930 PF01494 FAD binding domain RAM_25940 PF03466 LysR substrate binding domain RAM_25940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_25950 PF00005 ABC transporter RAM_25955 PF02653 Branched-chain amino acid transport system / permease component RAM_25970 PF08281 Sigma-70, region 4 RAM_25970 PF04542 Sigma-70 region 2 RAM_25980 PF06689 ClpX C4-type zinc finger RAM_25980 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_25980 PF07724 AAA domain (Cdc48 subfamily) RAM_26000 PF01183 Glycosyl hydrolases family 25 RAM_26005 PF06969 HemN C-terminal domain RAM_26005 PF04055 Radical SAM superfamily RAM_26010 PF00535 Glycosyl transferase family 2 RAM_26045 PF00106 short chain dehydrogenase RAM_26055 PF03144 Elongation factor Tu domain 2 RAM_26055 PF00009 Elongation factor Tu GTP binding domain RAM_26055 PF09105 Elongation factor SelB, winged helix RAM_26055 PF09106 Elongation factor SelB, winged helix RAM_26055 PF03144 Elongation factor Tu domain 2 RAM_26055 PF09107 Elongation factor SelB, winged helix RAM_26055 PF00009 Elongation factor Tu GTP binding domain RAM_26055 PF09105 Elongation factor SelB, winged helix RAM_26055 PF09107 Elongation factor SelB, winged helix RAM_26055 PF09106 Elongation factor SelB, winged helix RAM_26060 PF12390 Selenocysteine synthase N terminal RAM_26060 PF03841 L-seryl-tRNA selenium transferase RAM_26070 PF02769 AIR synthase related protein, C-terminal domain RAM_26070 PF00586 AIR synthase related protein, N-terminal domain RAM_26095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_26105 PF02525 Flavodoxin-like fold RAM_26120 PF00561 alpha/beta hydrolase fold RAM_26120 PF08386 TAP-like protein RAM_26125 PF01494 FAD binding domain RAM_26155 PF00561 alpha/beta hydrolase fold RAM_26160 PF00440 Bacterial regulatory proteins, tetR family RAM_26170 PF02983 Alpha-lytic protease prodomain RAM_26205 PF00672 HAMP domain RAM_26205 PF07228 Stage II sporulation protein E (SpoIIE) RAM_26215 PF03176 MMPL family RAM_26240 PF02675 S-adenosylmethionine decarboxylase RAM_26245 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_26245 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_26295 PF01339 CheB methylesterase RAM_26295 PF00072 Response regulator receiver domain RAM_26300 PF00672 HAMP domain RAM_26300 PF07730 Histidine kinase RAM_26300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_26310 PF00196 Bacterial regulatory proteins, luxR family RAM_26310 PF00072 Response regulator receiver domain RAM_26325 PF03091 CutA1 divalent ion tolerance protein RAM_26330 PF00012 Hsp70 protein RAM_26340 PF00350 Dynamin family RAM_26345 PF00350 Dynamin family RAM_26365 PF01494 FAD binding domain RAM_26370 PF02574 Homocysteine S-methyltransferase RAM_26370 PF02965 Vitamin B12 dependent methionine synthase, activation domain RAM_26370 PF02607 B12 binding domain RAM_26370 PF00809 Pterin binding enzyme RAM_26370 PF02310 B12 binding domain RAM_26375 PF00296 Luciferase-like monooxygenase RAM_26380 PF00083 Sugar (and other) transporter RAM_26385 PF03442 Carbohydrate binding domain X2 RAM_26385 PF00942 Cellulose binding domain RAM_26390 PF00107 Zinc-binding dehydrogenase RAM_26390 PF08240 Alcohol dehydrogenase GroES-like domain RAM_26415 PF00553 Cellulose binding domain RAM_26415 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_26420 PF00248 Aldo/keto reductase family RAM_26430 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RAM_26430 PF00553 Cellulose binding domain RAM_26435 PF00356 Bacterial regulatory proteins, lacI family RAM_26445 PF01341 Glycosyl hydrolases family 6 RAM_26445 PF00553 Cellulose binding domain RAM_26445 PF00041 Fibronectin type III domain RAM_26450 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_26450 PF00553 Cellulose binding domain RAM_26455 PF00553 Cellulose binding domain RAM_26455 PF00041 Fibronectin type III domain RAM_26455 PF02011 Glycosyl hydrolase family 48 RAM_26460 PF00356 Bacterial regulatory proteins, lacI family RAM_26470 PF00528 Binding-protein-dependent transport system inner membrane component RAM_26475 PF00528 Binding-protein-dependent transport system inner membrane component RAM_26480 PF00232 Glycosyl hydrolase family 1 RAM_26485 PF00920 Dehydratase family RAM_26495 PF00571 CBS domain RAM_26500 PF03167 Uracil DNA glycosylase superfamily RAM_26505 PF13298 DNA polymerase Ligase (LigD) RAM_26505 PF01068 ATP dependent DNA ligase domain RAM_26505 PF04679 ATP dependent DNA ligase C terminal region RAM_26510 PF13298 DNA polymerase Ligase (LigD) RAM_26510 PF01068 ATP dependent DNA ligase domain RAM_26510 PF04679 ATP dependent DNA ligase C terminal region RAM_26515 PF02735 Ku70/Ku80 beta-barrel domain RAM_26540 PF00296 Luciferase-like monooxygenase RAM_26550 PF13581 Histidine kinase-like ATPase domain RAM_26555 PF04545 Sigma-70, region 4 RAM_26555 PF04539 Sigma-70 region 3 RAM_26555 PF04542 Sigma-70 region 2 RAM_26560 PF01928 CYTH domain RAM_26560 PF05235 CHAD domain RAM_26580 PF03364 Polyketide cyclase / dehydrase and lipid transport RAM_26615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_26615 PF03466 LysR substrate binding domain RAM_26620 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_26620 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_26645 PF07690 Major Facilitator Superfamily RAM_26645 PF00083 Sugar (and other) transporter RAM_26650 PF00583 Acetyltransferase (GNAT) family RAM_26660 PF05593 RHS Repeat RAM_26660 PF05488 PAAR motif RAM_26710 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_26710 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_26715 PF01799 [2Fe-2S] binding domain RAM_26715 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_26720 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_26720 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_26740 PF00356 Bacterial regulatory proteins, lacI family RAM_26750 PF00722 Glycosyl hydrolases family 16 RAM_26760 PF01494 FAD binding domain RAM_26765 PF00753 Metallo-beta-lactamase superfamily RAM_26775 PF00925 GTP cyclohydrolase II RAM_26790 PF00817 impB/mucB/samB family RAM_26790 PF11799 impB/mucB/samB family C-terminal domain RAM_26805 PF00583 Acetyltransferase (GNAT) family RAM_26810 PF05221 S-adenosyl-L-homocysteine hydrolase RAM_26810 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RAM_26825 PF02735 Ku70/Ku80 beta-barrel domain RAM_26845 PF03259 Roadblock/LC7 domain RAM_26850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_26860 PF00005 ABC transporter RAM_26860 PF00664 ABC transporter transmembrane region RAM_26865 PF00005 ABC transporter RAM_26865 PF00664 ABC transporter transmembrane region RAM_26870 PF04679 ATP dependent DNA ligase C terminal region RAM_26870 PF01068 ATP dependent DNA ligase domain RAM_26870 PF13298 DNA polymerase Ligase (LigD) RAM_26885 PF00931 NB-ARC domain RAM_26885 PF00486 Transcriptional regulatory protein, C terminal RAM_26885 PF03704 Bacterial transcriptional activator domain RAM_26890 PF01965 DJ-1/PfpI family RAM_26895 PF01965 DJ-1/PfpI family RAM_26910 PF00753 Metallo-beta-lactamase superfamily RAM_26935 PF00378 Enoyl-CoA hydratase/isomerase RAM_26935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_26935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_26940 PF00561 alpha/beta hydrolase fold RAM_26965 PF01979 Amidohydrolase family RAM_26970 PF02824 TGS domain RAM_26970 PF04607 Region found in RelA / SpoT proteins RAM_26970 PF13291 ACT domain RAM_26975 PF00156 Phosphoribosyl transferase domain RAM_26980 PF07549 SecD/SecF GG Motif RAM_26980 PF02355 Protein export membrane protein RAM_26985 PF07549 SecD/SecF GG Motif RAM_26985 PF02355 Protein export membrane protein RAM_26990 PF02699 Preprotein translocase subunit RAM_26995 PF05496 Holliday junction DNA helicase RuvB P-loop domain RAM_26995 PF05491 RuvB C-terminal winged helix domain RAM_26995 PF17864 RuvB AAA lid domain RAM_27000 PF07499 RuvA, C-terminal domain RAM_27000 PF01330 RuvA N terminal domain RAM_27005 PF02075 Crossover junction endodeoxyribonuclease RuvC RAM_27020 PF01709 Transcriptional regulator RAM_27025 PF01174 SNO glutamine amidotransferase family RAM_27040 PF01381 Helix-turn-helix RAM_27040 PF08671 Anti-repressor SinI RAM_27045 PF01494 FAD binding domain RAM_27050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_27050 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_27050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_27055 PF00501 AMP-binding enzyme RAM_27055 PF00668 Condensation domain RAM_27055 PF13193 AMP-binding enzyme C-terminal domain RAM_27055 PF00550 Phosphopantetheine attachment site RAM_27070 PF01680 SOR/SNZ family RAM_27080 PF08031 Berberine and berberine like RAM_27080 PF01565 FAD binding domain RAM_27085 PF00009 Elongation factor Tu GTP binding domain RAM_27085 PF14492 Elongation Factor G, domain II RAM_27085 PF03144 Elongation factor Tu domain 2 RAM_27085 PF03764 Elongation factor G, domain IV RAM_27085 PF00679 Elongation factor G C-terminus RAM_27090 PF13478 XdhC Rossmann domain RAM_27090 PF02625 XdhC and CoxI family RAM_27110 PF13439 Glycosyltransferase Family 4 RAM_27115 PF03279 Bacterial lipid A biosynthesis acyltransferase RAM_27130 PF01230 HIT domain RAM_27135 PF03129 Anticodon binding domain RAM_27135 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_27135 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RAM_27140 PF00881 Nitroreductase family RAM_27145 PF02397 Bacterial sugar transferase RAM_27150 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_27160 PF11774 Lsr2 RAM_27165 PF13180 PDZ domain RAM_27165 PF00595 PDZ domain RAM_27170 PF01434 Peptidase family M41 RAM_27170 PF06480 FtsH Extracellular RAM_27170 PF17862 AAA+ lid domain RAM_27170 PF00004 ATPase family associated with various cellular activities (AAA) RAM_27180 PF03773 Predicted permease RAM_27200 PF00106 short chain dehydrogenase RAM_27205 PF00378 Enoyl-CoA hydratase/isomerase RAM_27210 PF13193 AMP-binding enzyme C-terminal domain RAM_27210 PF00501 AMP-binding enzyme RAM_27215 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_27215 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_27225 PF01546 Peptidase family M20/M25/M40 RAM_27225 PF07687 Peptidase dimerisation domain RAM_27240 PF01979 Amidohydrolase family RAM_27240 PF13382 Adenine deaminase C-terminal domain RAM_27255 PF05199 GMC oxidoreductase RAM_27255 PF00732 GMC oxidoreductase RAM_27265 PF01494 FAD binding domain RAM_27275 PF13193 AMP-binding enzyme C-terminal domain RAM_27275 PF00501 AMP-binding enzyme RAM_27300 PF00440 Bacterial regulatory proteins, tetR family RAM_27300 PF16925 Tetracyclin repressor-like, C-terminal domain RAM_27350 PF01842 ACT domain RAM_27350 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_27350 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_27355 PF00528 Binding-protein-dependent transport system inner membrane component RAM_27360 PF00528 Binding-protein-dependent transport system inner membrane component RAM_27370 PF00356 Bacterial regulatory proteins, lacI family RAM_27375 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_27385 PF07690 Major Facilitator Superfamily RAM_27400 PF08361 MAATS-type transcriptional repressor, C-terminal region RAM_27400 PF00440 Bacterial regulatory proteins, tetR family RAM_27450 PF00392 Bacterial regulatory proteins, gntR family RAM_27450 PF07729 FCD domain RAM_27470 PF00583 Acetyltransferase (GNAT) family RAM_27490 PF00732 GMC oxidoreductase RAM_27490 PF05199 GMC oxidoreductase RAM_27495 PF00483 Nucleotidyl transferase RAM_27500 PF16197 Ketoacyl-synthetase C-terminal extension RAM_27500 PF00550 Phosphopantetheine attachment site RAM_27500 PF00668 Condensation domain RAM_27500 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_27500 PF00202 Aminotransferase class-III RAM_27500 PF00501 AMP-binding enzyme RAM_27500 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_27500 PF13193 AMP-binding enzyme C-terminal domain RAM_27520 PF06722 Protein of unknown function (DUF1205) RAM_27530 PF03301 Tryptophan 2,3-dioxygenase RAM_27540 PF03559 NDP-hexose 2,3-dehydratase RAM_27545 PF00196 Bacterial regulatory proteins, luxR family RAM_27545 PF00072 Response regulator receiver domain RAM_27550 PF07730 Histidine kinase RAM_27560 PF00005 ABC transporter RAM_27570 PF17843 MycE methyltransferase N-terminal RAM_27575 PF00550 Phosphopantetheine attachment site RAM_27575 PF00668 Condensation domain RAM_27575 PF00975 Thioesterase domain RAM_27575 PF00501 AMP-binding enzyme RAM_27575 PF13193 AMP-binding enzyme C-terminal domain RAM_27580 PF06722 Protein of unknown function (DUF1205) RAM_27585 PF06722 Protein of unknown function (DUF1205) RAM_27590 PF06722 Protein of unknown function (DUF1205) RAM_27595 PF06722 Protein of unknown function (DUF1205) RAM_27600 PF06722 Protein of unknown function (DUF1205) RAM_27610 PF13732 Domain of unknown function (DUF4162) RAM_27610 PF00005 ABC transporter RAM_27620 PF06722 Protein of unknown function (DUF1205) RAM_27625 PF06722 Protein of unknown function (DUF1205) RAM_27630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_27635 PF00486 Transcriptional regulatory protein, C terminal RAM_27635 PF03704 Bacterial transcriptional activator domain RAM_27640 PF06722 Protein of unknown function (DUF1205) RAM_27645 PF00391 PEP-utilising enzyme, mobile domain RAM_27645 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RAM_27650 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_27650 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_27690 PF03364 Polyketide cyclase / dehydrase and lipid transport RAM_27695 PF00550 Phosphopantetheine attachment site RAM_27700 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_27700 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_27705 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_27705 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_27710 PF07883 Cupin domain RAM_27715 PF04673 Polyketide synthesis cyclase RAM_27725 PF00854 POT family RAM_27730 PF00891 O-methyltransferase domain RAM_27730 PF16864 Dimerisation domain RAM_27735 PF01494 FAD binding domain RAM_27740 PF01494 FAD binding domain RAM_27750 PF00296 Luciferase-like monooxygenase RAM_27760 PF00067 Cytochrome P450 RAM_27765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_27775 PF16363 GDP-mannose 4,6 dehydratase RAM_27780 PF01370 NAD dependent epimerase/dehydratase family RAM_27795 PF00196 Bacterial regulatory proteins, luxR family RAM_27800 PF03527 RHS protein RAM_27830 PF01740 STAS domain RAM_27830 PF00916 Sulfate permease family RAM_27845 PF00582 Universal stress protein family RAM_27865 PF00689 Cation transporting ATPase, C-terminus RAM_27865 PF00690 Cation transporter/ATPase, N-terminus RAM_27880 PF00871 Acetokinase family RAM_27885 PF13380 CoA binding domain RAM_27885 PF00583 Acetyltransferase (GNAT) family RAM_27885 PF13607 Succinyl-CoA ligase like flavodoxin domain RAM_27890 PF13492 GAF domain RAM_27890 PF13185 GAF domain RAM_27890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_27890 PF07730 Histidine kinase RAM_27900 PF00196 Bacterial regulatory proteins, luxR family RAM_27900 PF00072 Response regulator receiver domain RAM_27905 PF01654 Cytochrome bd terminal oxidase subunit I RAM_27910 PF02322 Cytochrome bd terminal oxidase subunit II RAM_27915 PF00005 ABC transporter RAM_27915 PF00664 ABC transporter transmembrane region RAM_27920 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase RAM_27920 PF09364 XFP N-terminal domain RAM_27920 PF09363 XFP C-terminal domain RAM_27925 PF00582 Universal stress protein family RAM_27930 PF01769 Divalent cation transporter RAM_27930 PF03448 MgtE intracellular N domain RAM_27930 PF00571 CBS domain RAM_27935 PF00582 Universal stress protein family RAM_27950 PF00582 Universal stress protein family RAM_27965 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_27980 PF12900 Pyridoxamine 5'-phosphate oxidase RAM_27990 PF07730 Histidine kinase RAM_27995 PF00072 Response regulator receiver domain RAM_27995 PF00196 Bacterial regulatory proteins, luxR family RAM_28010 PF07730 Histidine kinase RAM_28010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_28015 PF00072 Response regulator receiver domain RAM_28015 PF00196 Bacterial regulatory proteins, luxR family RAM_28035 PF03033 Glycosyltransferase family 28 N-terminal domain RAM_28040 PF01047 MarR family RAM_28065 PF17200 Single Cache domain 2 RAM_28065 PF07730 Histidine kinase RAM_28070 PF00196 Bacterial regulatory proteins, luxR family RAM_28070 PF00072 Response regulator receiver domain RAM_28105 PF10502 Signal peptidase, peptidase S26 RAM_28115 PF00872 Transposase, Mutator family RAM_28155 PF00067 Cytochrome P450 RAM_28175 PF00296 Luciferase-like monooxygenase RAM_28185 PF00990 Diguanylate cyclase, GGDEF domain RAM_28185 PF08448 PAS fold RAM_28200 PF00106 short chain dehydrogenase RAM_28210 PF07690 Major Facilitator Superfamily RAM_28220 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_28220 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_28235 PF00535 Glycosyl transferase family 2 RAM_28235 PF02709 N-terminal domain of galactosyltransferase RAM_28240 PF00535 Glycosyl transferase family 2 RAM_28245 PF00005 ABC transporter RAM_28245 PF00664 ABC transporter transmembrane region RAM_28250 PF00664 ABC transporter transmembrane region RAM_28250 PF00005 ABC transporter RAM_28275 PF06441 Epoxide hydrolase N terminus RAM_28280 PF07859 alpha/beta hydrolase fold RAM_28330 PF07690 Major Facilitator Superfamily RAM_28345 PF00486 Transcriptional regulatory protein, C terminal RAM_28345 PF00931 NB-ARC domain RAM_28345 PF03704 Bacterial transcriptional activator domain RAM_28355 PF13847 Methyltransferase domain RAM_28355 PF03551 Transcriptional regulator PadR-like family RAM_28380 PF00704 Glycosyl hydrolases family 18 RAM_28395 PF03358 NADPH-dependent FMN reductase RAM_28410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_28410 PF13492 GAF domain RAM_28410 PF07730 Histidine kinase RAM_28410 PF13185 GAF domain RAM_28420 PF00196 Bacterial regulatory proteins, luxR family RAM_28420 PF00072 Response regulator receiver domain RAM_28430 PF16200 C-terminal region of band_7 RAM_28430 PF01145 SPFH domain / Band 7 family RAM_28445 PF05139 Erythromycin esterase RAM_28445 PF00156 Phosphoribosyl transferase domain RAM_28500 PF01594 AI-2E family transporter RAM_28520 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_28575 PF00486 Transcriptional regulatory protein, C terminal RAM_28575 PF00072 Response regulator receiver domain RAM_28580 PF00672 HAMP domain RAM_28580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_28580 PF00512 His Kinase A (phospho-acceptor) domain RAM_28590 PF13439 Glycosyltransferase Family 4 RAM_28590 PF00534 Glycosyl transferases group 1 RAM_28595 PF01494 FAD binding domain RAM_28635 PF00440 Bacterial regulatory proteins, tetR family RAM_28635 PF17754 MftR C-terminal domain RAM_28640 PF08281 Sigma-70, region 4 RAM_28640 PF04542 Sigma-70 region 2 RAM_28645 PF04542 Sigma-70 region 2 RAM_28645 PF08281 Sigma-70, region 4 RAM_28650 PF08281 Sigma-70, region 4 RAM_28650 PF04542 Sigma-70 region 2 RAM_28655 PF03795 YCII-related domain RAM_28675 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_28675 PF00703 Glycosyl hydrolases family 2 RAM_28675 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_28680 PF03466 LysR substrate binding domain RAM_28680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_28720 PF00069 Protein kinase domain RAM_28725 PF12680 SnoaL-like domain RAM_28725 PF04542 Sigma-70 region 2 RAM_28725 PF08281 Sigma-70, region 4 RAM_28730 PF04072 Leucine carboxyl methyltransferase RAM_28740 PF00067 Cytochrome P450 RAM_28750 PF00067 Cytochrome P450 RAM_28755 PF01494 FAD binding domain RAM_28785 PF06441 Epoxide hydrolase N terminus RAM_28790 PF06441 Epoxide hydrolase N terminus RAM_28800 PF00156 Phosphoribosyl transferase domain RAM_28810 PF00196 Bacterial regulatory proteins, luxR family RAM_28815 PF13191 AAA ATPase domain RAM_28815 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_28850 PF07690 Major Facilitator Superfamily RAM_28860 PF00196 Bacterial regulatory proteins, luxR family RAM_28875 PF00005 ABC transporter RAM_28915 PF12849 PBP superfamily domain RAM_28920 PF00528 Binding-protein-dependent transport system inner membrane component RAM_28925 PF00528 Binding-protein-dependent transport system inner membrane component RAM_28935 PF00672 HAMP domain RAM_28935 PF00512 His Kinase A (phospho-acceptor) domain RAM_28935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_28940 PF00072 Response regulator receiver domain RAM_28940 PF00486 Transcriptional regulatory protein, C terminal RAM_28945 PF00535 Glycosyl transferase family 2 RAM_28950 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RAM_28960 PF07690 Major Facilitator Superfamily RAM_28965 PF01494 FAD binding domain RAM_28990 PF00440 Bacterial regulatory proteins, tetR family RAM_28990 PF16295 Tetracyclin repressor-like, C-terminal domain RAM_29015 PF00561 alpha/beta hydrolase fold RAM_29045 PF08281 Sigma-70, region 4 RAM_29045 PF04542 Sigma-70 region 2 RAM_29065 PF00857 Isochorismatase family RAM_29075 PF00561 alpha/beta hydrolase fold RAM_29075 PF08386 TAP-like protein RAM_29095 PF01494 FAD binding domain RAM_29100 PF09209 Tetracyclin repressor-like, C-terminal domain RAM_29100 PF00440 Bacterial regulatory proteins, tetR family RAM_29115 PF01593 Flavin containing amine oxidoreductase RAM_29120 PF09339 IclR helix-turn-helix domain RAM_29120 PF01614 Bacterial transcriptional regulator RAM_29135 PF00561 alpha/beta hydrolase fold RAM_29140 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RAM_29145 PF00313 'Cold-shock' DNA-binding domain RAM_29155 PF00440 Bacterial regulatory proteins, tetR family RAM_29155 PF08361 MAATS-type transcriptional repressor, C-terminal region RAM_29165 PF00106 short chain dehydrogenase RAM_29175 PF03795 YCII-related domain RAM_29185 PF02929 Beta galactosidase small chain RAM_29185 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_29185 PF00703 Glycosyl hydrolases family 2 RAM_29185 PF16353 Domain of unknown function(DUF4981) RAM_29185 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_29190 PF03471 Transporter associated domain RAM_29190 PF00999 Sodium/hydrogen exchanger family RAM_29190 PF02080 TrkA-C domain RAM_29200 PF00115 Cytochrome C and Quinol oxidase polypeptide I RAM_29205 PF00355 Rieske [2Fe-2S] domain RAM_29210 PF13631 Cytochrome b(N-terminal)/b6/petB RAM_29215 PF13631 Cytochrome b(N-terminal)/b6/petB RAM_29240 PF01494 FAD binding domain RAM_29250 PF00072 Response regulator receiver domain RAM_29250 PF00486 Transcriptional regulatory protein, C terminal RAM_29255 PF00512 His Kinase A (phospho-acceptor) domain RAM_29255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_29255 PF00672 HAMP domain RAM_29270 PF01638 HxlR-like helix-turn-helix RAM_29280 PF01047 MarR family RAM_29285 PF00654 Voltage gated chloride channel RAM_29320 PF00384 Molybdopterin oxidoreductase RAM_29320 PF01568 Molydopterin dinucleotide binding domain RAM_29320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_29325 PF00384 Molybdopterin oxidoreductase RAM_29325 PF01568 Molydopterin dinucleotide binding domain RAM_29325 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_29330 PF12800 4Fe-4S binding domain RAM_29330 PF13247 4Fe-4S dicluster domain RAM_29365 PF01226 Formate/nitrite transporter RAM_29375 PF03600 Citrate transporter RAM_29395 PF13520 Amino acid permease RAM_29400 PF04072 Leucine carboxyl methyltransferase RAM_29435 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_29435 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_29440 PF01799 [2Fe-2S] binding domain RAM_29440 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_29450 PF00248 Aldo/keto reductase family RAM_29455 PF13823 Alcohol dehydrogenase GroES-associated RAM_29455 PF00107 Zinc-binding dehydrogenase RAM_29455 PF08240 Alcohol dehydrogenase GroES-like domain RAM_29470 PF00248 Aldo/keto reductase family RAM_29510 PF00356 Bacterial regulatory proteins, lacI family RAM_29520 PF00356 Bacterial regulatory proteins, lacI family RAM_29550 PF00356 Bacterial regulatory proteins, lacI family RAM_29570 PF12833 Helix-turn-helix domain RAM_29570 PF02311 AraC-like ligand binding domain RAM_29585 PF00196 Bacterial regulatory proteins, luxR family RAM_29750 PF13340 Putative transposase of IS4/5 family (DUF4096) RAM_29775 PF09704 CRISPR-associated protein (Cas_Cas5) RAM_29780 PF09344 CT1975-like protein RAM_29800 PF18395 Cas3 C-terminal domain RAM_29800 PF18019 HD domain RAM_29855 PF13613 Helix-turn-helix of DDE superfamily endonuclease RAM_29855 PF01609 Transposase DDE domain RAM_29895 PF02011 Glycosyl hydrolase family 48 RAM_29895 PF00041 Fibronectin type III domain RAM_29895 PF00553 Cellulose binding domain RAM_29915 PF00011 Hsp20/alpha crystallin family RAM_29930 PF01425 Amidase RAM_29935 PF00376 MerR family regulatory protein RAM_29935 PF09278 MerR, DNA binding RAM_29940 PF01022 Bacterial regulatory protein, arsR family RAM_29945 PF16916 Dimerisation domain of Zinc Transporter RAM_29945 PF01545 Cation efflux family RAM_29960 PF00455 DeoR C terminal sensor domain RAM_29960 PF08220 DeoR-like helix-turn-helix domain RAM_29970 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_29970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_29995 PF01547 Bacterial extracellular solute-binding protein RAM_30010 PF16919 Protein kinase G rubredoxin domain RAM_30010 PF00069 Protein kinase domain RAM_30010 PF16918 Protein kinase G tetratricopeptide repeat RAM_30025 PF00005 ABC transporter RAM_30025 PF08402 TOBE domain RAM_30035 PF04199 Putative cyclase RAM_30040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_30040 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_30040 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_30060 PF00196 Bacterial regulatory proteins, luxR family RAM_30060 PF00072 Response regulator receiver domain RAM_30070 PF02525 Flavodoxin-like fold RAM_30075 PF01047 MarR family RAM_30080 PF02355 Protein export membrane protein RAM_30090 PF11066 Protein of unknown function (DUF2867) RAM_30090 PF13460 NAD(P)H-binding RAM_30100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_30100 PF03466 LysR substrate binding domain RAM_30110 PF00291 Pyridoxal-phosphate dependent enzyme RAM_30110 PF13291 ACT domain RAM_30125 PF00877 NlpC/P60 family RAM_30150 PF07498 Rho termination factor, N-terminal domain RAM_30150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAM_30150 PF07497 Rho termination factor, RNA-binding domain RAM_30165 PF00331 Glycosyl hydrolase family 10 RAM_30165 PF00652 Ricin-type beta-trefoil lectin domain RAM_30175 PF00106 short chain dehydrogenase RAM_30180 PF00106 short chain dehydrogenase RAM_30185 PF01256 Carbohydrate kinase RAM_30190 PF13456 Reverse transcriptase-like RAM_30190 PF00300 Histidine phosphatase superfamily (branch 1) RAM_30220 PF00072 Response regulator receiver domain RAM_30220 PF13426 PAS domain RAM_30220 PF08448 PAS fold RAM_30220 PF00512 His Kinase A (phospho-acceptor) domain RAM_30220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_30240 PF09137 Glucodextranase, domain N RAM_30240 PF00723 Glycosyl hydrolases family 15 RAM_30245 PF04978 Protein of unknown function (DUF664) RAM_30250 PF00248 Aldo/keto reductase family RAM_30265 PF00561 alpha/beta hydrolase fold RAM_30265 PF08386 TAP-like protein RAM_30280 PF00486 Transcriptional regulatory protein, C terminal RAM_30280 PF03704 Bacterial transcriptional activator domain RAM_30280 PF00931 NB-ARC domain RAM_30340 PF00589 Phage integrase family RAM_30340 PF02899 Phage integrase, N-terminal SAM-like domain RAM_30345 PF00171 Aldehyde dehydrogenase family RAM_30395 PF01625 Peptide methionine sulfoxide reductase RAM_30400 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_30400 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_30400 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_30400 PF04389 Peptidase family M28 RAM_30400 PF04389 Peptidase family M28 RAM_30400 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_30410 PF00005 ABC transporter RAM_30410 PF13732 Domain of unknown function (DUF4162) RAM_30415 PF01061 ABC-2 type transporter RAM_30420 PF04075 F420H(2)-dependent quinone reductase RAM_30430 PF00106 short chain dehydrogenase RAM_30435 PF03793 PASTA domain RAM_30435 PF00069 Protein kinase domain RAM_30450 PF02146 Sir2 family RAM_30460 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RAM_30460 PF10531 SLBB domain RAM_30460 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_30480 PF04185 Phosphoesterase family RAM_30505 PF10503 Esterase PHB depolymerase RAM_30530 PF00083 Sugar (and other) transporter RAM_30560 PF13193 AMP-binding enzyme C-terminal domain RAM_30560 PF00501 AMP-binding enzyme RAM_30585 PF07728 AAA domain (dynein-related subfamily) RAM_30595 PF05762 VWA domain containing CoxE-like protein RAM_30600 PF00444 Ribosomal protein L36 RAM_30610 PF01638 HxlR-like helix-turn-helix RAM_30615 PF00743 Flavin-binding monooxygenase-like RAM_30620 PF02278 Polysaccharide lyase family 8, super-sandwich domain RAM_30620 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain RAM_30620 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain RAM_30625 PF00171 Aldehyde dehydrogenase family RAM_30635 PF13378 Enolase C-terminal domain-like RAM_30635 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_30640 PF00701 Dihydrodipicolinate synthetase family RAM_30650 PF01614 Bacterial transcriptional regulator RAM_30655 PF16363 GDP-mannose 4,6 dehydratase RAM_30670 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain RAM_30670 PF01522 Polysaccharide deacetylase RAM_30680 PF00072 Response regulator receiver domain RAM_30680 PF00196 Bacterial regulatory proteins, luxR family RAM_30705 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_30720 PF00465 Iron-containing alcohol dehydrogenase RAM_30730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_30745 PF11838 ERAP1-like C-terminal domain RAM_30745 PF01433 Peptidase family M1 domain RAM_30750 PF00501 AMP-binding enzyme RAM_30750 PF00550 Phosphopantetheine attachment site RAM_30750 PF00668 Condensation domain RAM_30750 PF13193 AMP-binding enzyme C-terminal domain RAM_30755 PF01926 50S ribosome-binding GTPase RAM_30755 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RAM_30765 PF02224 Cytidylate kinase RAM_30785 PF00999 Sodium/hydrogen exchanger family RAM_30790 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_30790 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_30795 PF04072 Leucine carboxyl methyltransferase RAM_30800 PF00849 RNA pseudouridylate synthase RAM_30800 PF01479 S4 domain RAM_30805 PF04079 Segregation and condensation complex subunit ScpB RAM_30810 PF02616 Segregation and condensation protein ScpA RAM_30820 PF13614 AAA domain RAM_30825 PF02899 Phage integrase, N-terminal SAM-like domain RAM_30825 PF00589 Phage integrase family RAM_30835 PF00293 NUDIX domain RAM_30840 PF06418 CTP synthase N-terminus RAM_30840 PF00117 Glutamine amidotransferase class-I RAM_30850 PF07729 FCD domain RAM_30850 PF00392 Bacterial regulatory proteins, gntR family RAM_30855 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RAM_30860 PF01177 Asp/Glu/Hydantoin racemase RAM_30875 PF11382 Copper transport outer membrane protein, MctB RAM_30890 PF00107 Zinc-binding dehydrogenase RAM_30890 PF08240 Alcohol dehydrogenase GroES-like domain RAM_30900 PF02463 RecF/RecN/SMC N terminal domain RAM_30905 PF01513 ATP-NAD kinase RAM_30910 PF01479 S4 domain RAM_30910 PF01728 FtsJ-like methyltransferase RAM_30920 PF18407 GCN5-related N-acetyltransferase like domain RAM_30920 PF13344 Haloacid dehalogenase-like hydrolase RAM_30930 PF00579 tRNA synthetases class I (W and Y) RAM_30935 PF02245 Methylpurine-DNA glycosylase (MPG) RAM_30945 PF13761 Domain of unknown function (DUF4166) RAM_30955 PF00206 Lyase RAM_30955 PF14698 Argininosuccinate lyase C-terminal RAM_30960 PF00764 Arginosuccinate synthase RAM_30965 PF01316 Arginine repressor, DNA binding domain RAM_30965 PF02863 Arginine repressor, C-terminal domain RAM_30970 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RAM_30970 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RAM_30975 PF00202 Aminotransferase class-III RAM_30980 PF00696 Amino acid kinase family RAM_30985 PF01960 ArgJ family RAM_30990 PF01118 Semialdehyde dehydrogenase, NAD binding domain RAM_30990 PF02774 Semialdehyde dehydrogenase, dimerisation domain RAM_31010 PF00561 alpha/beta hydrolase fold RAM_31020 PF01588 Putative tRNA binding domain RAM_31020 PF03147 Ferredoxin-fold anticodon binding domain RAM_31020 PF03483 B3/4 domain RAM_31020 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RAM_31020 PF03484 tRNA synthetase B5 domain RAM_31025 PF01409 tRNA synthetases class II core domain (F) RAM_31025 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RAM_31035 PF00588 SpoU rRNA Methylase family RAM_31035 PF08032 RNA 2'-O ribose methyltransferase substrate binding RAM_31040 PF00453 Ribosomal protein L20 RAM_31045 PF01632 Ribosomal protein L35 RAM_31050 PF05198 Translation initiation factor IF-3, N-terminal domain RAM_31050 PF00707 Translation initiation factor IF-3, C-terminal domain RAM_31060 PF07729 FCD domain RAM_31060 PF00392 Bacterial regulatory proteins, gntR family RAM_31065 PF00291 Pyridoxal-phosphate dependent enzyme RAM_31075 PF01614 Bacterial transcriptional regulator RAM_31075 PF09339 IclR helix-turn-helix domain RAM_31080 PF00294 pfkB family carbohydrate kinase RAM_31090 PF07969 Amidohydrolase family RAM_31095 PF02447 GntP family permease RAM_31110 PF00528 Binding-protein-dependent transport system inner membrane component RAM_31115 PF00528 Binding-protein-dependent transport system inner membrane component RAM_31120 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_31120 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_31130 PF00072 Response regulator receiver domain RAM_31135 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RAM_31135 PF17203 Single cache domain 3 RAM_31135 PF00989 PAS fold RAM_31135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_31140 PF00375 Sodium:dicarboxylate symporter family RAM_31150 PF07690 Major Facilitator Superfamily RAM_31165 PF04545 Sigma-70, region 4 RAM_31165 PF04542 Sigma-70 region 2 RAM_31180 PF00005 ABC transporter RAM_31180 PF17755 UvrA DNA-binding domain RAM_31180 PF17760 UvrA interaction domain RAM_31190 PF00753 Metallo-beta-lactamase superfamily RAM_31220 PF07885 Ion channel RAM_31220 PF00027 Cyclic nucleotide-binding domain RAM_31225 PF00075 RNase H RAM_31240 PF18368 Exo-beta-D-glucosaminidase Ig-fold domain RAM_31240 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_31240 PF00703 Glycosyl hydrolases family 2 RAM_31240 PF16990 Carbohydrate binding module (family 35) RAM_31245 PF00135 Carboxylesterase family RAM_31255 PF00999 Sodium/hydrogen exchanger family RAM_31260 PF00300 Histidine phosphatase superfamily (branch 1) RAM_31270 PF05423 Mycobacterium membrane protein RAM_31280 PF00356 Bacterial regulatory proteins, lacI family RAM_31305 PF07676 WD40-like Beta Propeller Repeat RAM_31305 PF00326 Prolyl oligopeptidase family RAM_31310 PF03741 Integral membrane protein TerC family RAM_31315 PF00005 ABC transporter RAM_31335 PF00378 Enoyl-CoA hydratase/isomerase RAM_31345 PF05576 PS-10 peptidase S37 RAM_31355 PF04851 Type III restriction enzyme, res subunit RAM_31355 PF02151 UvrB/uvrC motif RAM_31355 PF00271 Helicase conserved C-terminal domain RAM_31355 PF17757 UvrB interaction domain RAM_31355 PF12344 Ultra-violet resistance protein B RAM_31380 PF01121 Dephospho-CoA kinase RAM_31380 PF04229 GrpB protein RAM_31405 PF00575 S1 RNA binding domain RAM_31410 PF08241 Methyltransferase domain RAM_31435 PF08361 MAATS-type transcriptional repressor, C-terminal region RAM_31435 PF00440 Bacterial regulatory proteins, tetR family RAM_31440 PF12833 Helix-turn-helix domain RAM_31440 PF02311 AraC-like ligand binding domain RAM_31445 PF00107 Zinc-binding dehydrogenase RAM_31445 PF08240 Alcohol dehydrogenase GroES-like domain RAM_31460 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RAM_31460 PF01367 5'-3' exonuclease, C-terminal SAM fold RAM_31460 PF00476 DNA polymerase family A RAM_31465 PF03061 Thioesterase superfamily RAM_31470 PF03466 LysR substrate binding domain RAM_31470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_31485 PF02653 Branched-chain amino acid transport system / permease component RAM_31490 PF02653 Branched-chain amino acid transport system / permease component RAM_31490 PF11862 Domain of unknown function (DUF3382) RAM_31495 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_31495 PF00005 ABC transporter RAM_31500 PF00005 ABC transporter RAM_31510 PF00072 Response regulator receiver domain RAM_31510 PF03861 ANTAR domain RAM_31525 PF12307 Protein of unknown function (DUF3631) RAM_31570 PF00436 Single-strand binding protein family RAM_31620 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_31625 PF00293 NUDIX domain RAM_31625 PF13344 Haloacid dehalogenase-like hydrolase RAM_31685 PF01230 HIT domain RAM_31710 PF12680 SnoaL-like domain RAM_31710 PF08281 Sigma-70, region 4 RAM_31710 PF04542 Sigma-70 region 2 RAM_31760 PF07730 Histidine kinase RAM_31760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_31765 PF00072 Response regulator receiver domain RAM_31765 PF00196 Bacterial regulatory proteins, luxR family RAM_31785 PF00072 Response regulator receiver domain RAM_31785 PF00196 Bacterial regulatory proteins, luxR family RAM_31790 PF07730 Histidine kinase RAM_31815 PF01370 NAD dependent epimerase/dehydratase family RAM_31820 PF00005 ABC transporter RAM_31835 PF04542 Sigma-70 region 2 RAM_31835 PF08281 Sigma-70, region 4 RAM_31840 PF00465 Iron-containing alcohol dehydrogenase RAM_31845 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_31845 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_31850 PF00171 Aldehyde dehydrogenase family RAM_31855 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_31855 PF13378 Enolase C-terminal domain-like RAM_31870 PF06441 Epoxide hydrolase N terminus RAM_31890 PF01965 DJ-1/PfpI family RAM_31890 PF12833 Helix-turn-helix domain RAM_31895 PF06441 Epoxide hydrolase N terminus RAM_31905 PF00106 short chain dehydrogenase RAM_31925 PF04545 Sigma-70, region 4 RAM_31925 PF04542 Sigma-70 region 2 RAM_31925 PF04539 Sigma-70 region 3 RAM_31945 PF00291 Pyridoxal-phosphate dependent enzyme RAM_31950 PF00501 AMP-binding enzyme RAM_31950 PF13193 AMP-binding enzyme C-terminal domain RAM_31950 PF00668 Condensation domain RAM_31950 PF00550 Phosphopantetheine attachment site RAM_31955 PF00975 Thioesterase domain RAM_31960 PF13193 AMP-binding enzyme C-terminal domain RAM_31960 PF00550 Phosphopantetheine attachment site RAM_31960 PF00501 AMP-binding enzyme RAM_31960 PF00550 Phosphopantetheine attachment site RAM_31960 PF00668 Condensation domain RAM_31960 PF00501 AMP-binding enzyme RAM_31960 PF00668 Condensation domain RAM_31960 PF13193 AMP-binding enzyme C-terminal domain RAM_31965 PF00975 Thioesterase domain RAM_31965 PF00550 Phosphopantetheine attachment site RAM_31965 PF00391 PEP-utilising enzyme, mobile domain RAM_31965 PF08241 Methyltransferase domain RAM_31965 PF00668 Condensation domain RAM_31965 PF13193 AMP-binding enzyme C-terminal domain RAM_31965 PF00501 AMP-binding enzyme RAM_31970 PF00501 AMP-binding enzyme RAM_31970 PF13193 AMP-binding enzyme C-terminal domain RAM_31970 PF00668 Condensation domain RAM_31970 PF00550 Phosphopantetheine attachment site RAM_31980 PF00550 Phosphopantetheine attachment site RAM_31980 PF00501 AMP-binding enzyme RAM_31980 PF07993 Male sterility protein RAM_31980 PF00668 Condensation domain RAM_31980 PF13193 AMP-binding enzyme C-terminal domain RAM_31990 PF03621 MbtH-like protein RAM_31995 PF13193 AMP-binding enzyme C-terminal domain RAM_31995 PF00501 AMP-binding enzyme RAM_31995 PF00550 Phosphopantetheine attachment site RAM_31995 PF00975 Thioesterase domain RAM_31995 PF00668 Condensation domain RAM_32000 PF00067 Cytochrome P450 RAM_32015 PF00668 Condensation domain RAM_32015 PF00550 Phosphopantetheine attachment site RAM_32015 PF00501 AMP-binding enzyme RAM_32015 PF13193 AMP-binding enzyme C-terminal domain RAM_32015 PF07993 Male sterility protein RAM_32020 PF13193 AMP-binding enzyme C-terminal domain RAM_32020 PF07993 Male sterility protein RAM_32020 PF00668 Condensation domain RAM_32020 PF00550 Phosphopantetheine attachment site RAM_32020 PF00501 AMP-binding enzyme RAM_32025 PF00501 AMP-binding enzyme RAM_32025 PF13193 AMP-binding enzyme C-terminal domain RAM_32025 PF00550 Phosphopantetheine attachment site RAM_32025 PF00668 Condensation domain RAM_32030 PF00196 Bacterial regulatory proteins, luxR family RAM_32030 PF00072 Response regulator receiver domain RAM_32045 PF07690 Major Facilitator Superfamily RAM_32055 PF08478 POTRA domain, FtsQ-type RAM_32055 PF03799 Cell division protein FtsQ RAM_32060 PF08245 Mur ligase middle domain RAM_32060 PF02875 Mur ligase family, glutamate ligase domain RAM_32060 PF01225 Mur ligase family, catalytic domain RAM_32065 PF03033 Glycosyltransferase family 28 N-terminal domain RAM_32065 PF04101 Glycosyltransferase family 28 C-terminal domain RAM_32070 PF01098 Cell cycle protein RAM_32075 PF08245 Mur ligase middle domain RAM_32080 PF00953 Glycosyl transferase family 4 RAM_32080 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RAM_32085 PF02875 Mur ligase family, glutamate ligase domain RAM_32085 PF01225 Mur ligase family, catalytic domain RAM_32085 PF08245 Mur ligase middle domain RAM_32090 PF08245 Mur ligase middle domain RAM_32090 PF02875 Mur ligase family, glutamate ligase domain RAM_32090 PF01225 Mur ligase family, catalytic domain RAM_32100 PF03717 Penicillin-binding Protein dimerisation domain RAM_32100 PF00905 Penicillin binding protein transpeptidase domain RAM_32110 PF01795 MraW methylase family RAM_32115 PF02381 MraZ protein, putative antitoxin-like RAM_32145 PF17863 AAA lid domain RAM_32145 PF07726 ATPase family associated with various cellular activities (AAA) RAM_32155 PF11992 Domain of unknown function (DUF3488) RAM_32155 PF01841 Transglutaminase-like superfamily RAM_32155 PF13559 Domain of unknown function (DUF4129) RAM_32175 PF13614 AAA domain RAM_32180 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_32180 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_32185 PF00962 Adenosine/AMP deaminase RAM_32195 PF01180 Dihydroorotate dehydrogenase RAM_32200 PF01425 Amidase RAM_32220 PF00994 Probable molybdopterin binding domain RAM_32220 PF18146 Damage-inducible protein CinA KH domain RAM_32220 PF02464 Competence-damaged protein RAM_32230 PF00919 Uncharacterized protein family UPF0004 RAM_32230 PF04055 Radical SAM superfamily RAM_32230 PF18693 TRAM domain RAM_32235 PF00583 Acetyltransferase (GNAT) family RAM_32265 PF09397 Ftsk gamma domain RAM_32265 PF01580 FtsK/SpoIIIE family RAM_32265 PF17854 FtsK alpha domain RAM_32265 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RAM_32275 PF03358 NADPH-dependent FMN reductase RAM_32295 PF00324 Amino acid permease RAM_32305 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain RAM_32305 PF12706 Beta-lactamase superfamily domain RAM_32305 PF17770 Ribonuclease J C-terminal domain RAM_32310 PF00701 Dihydrodipicolinate synthetase family RAM_32315 PF00069 Protein kinase domain RAM_32325 PF01566 Natural resistance-associated macrophage protein RAM_32325 PF03358 NADPH-dependent FMN reductase RAM_32335 PF02511 Thymidylate synthase complementing protein RAM_32350 PF06224 Winged helix DNA-binding domain RAM_32375 PF03466 LysR substrate binding domain RAM_32375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_32380 PF09084 NMT1/THI5 like RAM_32390 PF05173 Dihydrodipicolinate reductase, C-terminus RAM_32390 PF01113 Dihydrodipicolinate reductase, N-terminus RAM_32395 PF05193 Peptidase M16 inactive domain RAM_32395 PF00675 Insulinase (Peptidase family M16) RAM_32400 PF00575 S1 RNA binding domain RAM_32400 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RAM_32400 PF00013 KH domain RAM_32400 PF01138 3' exoribonuclease family, domain 1 RAM_32405 PF00312 Ribosomal protein S15 RAM_32420 PF01687 Riboflavin kinase RAM_32420 PF06574 FAD synthetase RAM_32425 PF09142 tRNA Pseudouridine synthase II, C terminal RAM_32425 PF01509 TruB family pseudouridylate synthase (N terminal domain) RAM_32425 PF16198 tRNA pseudouridylate synthase B C-terminal domain RAM_32440 PF07690 Major Facilitator Superfamily RAM_32450 PF01368 DHH family RAM_32450 PF02272 DHHA1 domain RAM_32455 PF08241 Methyltransferase domain RAM_32460 PF15975 Flotillin RAM_32460 PF01145 SPFH domain / Band 7 family RAM_32475 PF08241 Methyltransferase domain RAM_32490 PF02033 Ribosome-binding factor A RAM_32500 PF00009 Elongation factor Tu GTP binding domain RAM_32500 PF11987 Translation-initiation factor 2 RAM_32500 PF04760 Translation initiation factor IF-2, N-terminal region RAM_32510 PF13184 NusA-like KH domain RAM_32510 PF08529 NusA N-terminal domain RAM_32515 PF02576 RimP N-terminal domain RAM_32515 PF17384 RimP C-terminal SH3 domain RAM_32545 PF00440 Bacterial regulatory proteins, tetR family RAM_32545 PF13977 BetI-type transcriptional repressor, C-terminal RAM_32555 PF07730 Histidine kinase RAM_32560 PF00196 Bacterial regulatory proteins, luxR family RAM_32560 PF00072 Response regulator receiver domain RAM_32570 PF01638 HxlR-like helix-turn-helix RAM_32580 PF00440 Bacterial regulatory proteins, tetR family RAM_32585 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_32585 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_32600 PF00072 Response regulator receiver domain RAM_32600 PF00486 Transcriptional regulatory protein, C terminal RAM_32605 PF00512 His Kinase A (phospho-acceptor) domain RAM_32605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_32615 PF00931 NB-ARC domain RAM_32615 PF03704 Bacterial transcriptional activator domain RAM_32615 PF00486 Transcriptional regulatory protein, C terminal RAM_32635 PF03466 LysR substrate binding domain RAM_32635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_32640 PF02515 CoA-transferase family III RAM_32645 PF00378 Enoyl-CoA hydratase/isomerase RAM_32650 PF06314 Acetoacetate decarboxylase (ADC) RAM_32655 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_32655 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_32660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_32660 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_32660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_32665 PF03816 Cell envelope-related transcriptional attenuator domain RAM_32665 PF13399 LytR cell envelope-related transcriptional attenuator RAM_32670 PF00106 short chain dehydrogenase RAM_32675 PF04542 Sigma-70 region 2 RAM_32675 PF08281 Sigma-70, region 4 RAM_32675 PF12680 SnoaL-like domain RAM_32680 PF02467 Transcription factor WhiB RAM_32690 PF08281 Sigma-70, region 4 RAM_32690 PF04542 Sigma-70 region 2 RAM_32695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_32695 PF03466 LysR substrate binding domain RAM_32700 PF13593 SBF-like CPA transporter family (DUF4137) RAM_32710 PF07732 Multicopper oxidase RAM_32710 PF07731 Multicopper oxidase RAM_32715 PF00067 Cytochrome P450 RAM_32755 PF03704 Bacterial transcriptional activator domain RAM_32755 PF00931 NB-ARC domain RAM_32755 PF00486 Transcriptional regulatory protein, C terminal RAM_32760 PF04650 YSIRK type signal peptide RAM_32760 PF17961 Bacterial Ig domain RAM_32760 PF17210 SdrD B-like domain RAM_32760 PF00746 LPXTG cell wall anchor motif RAM_32790 PF00266 Aminotransferase class-V RAM_32800 PF00561 alpha/beta hydrolase fold RAM_32810 PF00487 Fatty acid desaturase RAM_32850 PF12680 SnoaL-like domain RAM_32850 PF08281 Sigma-70, region 4 RAM_32850 PF04542 Sigma-70 region 2 RAM_32865 PF00440 Bacterial regulatory proteins, tetR family RAM_32865 PF16925 Tetracyclin repressor-like, C-terminal domain RAM_32880 PF04616 Glycosyl hydrolases family 43 RAM_32880 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain RAM_32895 PF08281 Sigma-70, region 4 RAM_32895 PF04542 Sigma-70 region 2 RAM_32900 PF03795 YCII-related domain RAM_32905 PF00561 alpha/beta hydrolase fold RAM_32910 PF00440 Bacterial regulatory proteins, tetR family RAM_32915 PF00107 Zinc-binding dehydrogenase RAM_32915 PF08240 Alcohol dehydrogenase GroES-like domain RAM_32940 PF00012 Hsp70 protein RAM_32955 PF01979 Amidohydrolase family RAM_32970 PF00652 Ricin-type beta-trefoil lectin domain RAM_32970 PF00331 Glycosyl hydrolase family 10 RAM_32975 PF00331 Glycosyl hydrolase family 10 RAM_32975 PF00553 Cellulose binding domain RAM_33000 PF01979 Amidohydrolase family RAM_33005 PF00067 Cytochrome P450 RAM_33030 PF00072 Response regulator receiver domain RAM_33030 PF00196 Bacterial regulatory proteins, luxR family RAM_33045 PF03704 Bacterial transcriptional activator domain RAM_33060 PF01757 Acyltransferase family RAM_33105 PF00486 Transcriptional regulatory protein, C terminal RAM_33105 PF00931 NB-ARC domain RAM_33105 PF03704 Bacterial transcriptional activator domain RAM_33135 PF00248 Aldo/keto reductase family RAM_33145 PF00069 Protein kinase domain RAM_33145 PF13191 AAA ATPase domain RAM_33150 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_33150 PF01799 [2Fe-2S] binding domain RAM_33160 PF00196 Bacterial regulatory proteins, luxR family RAM_33160 PF17874 MalT-like TPR region RAM_33165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_33165 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_33165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_33170 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RAM_33175 PF00561 alpha/beta hydrolase fold RAM_33180 PF00501 AMP-binding enzyme RAM_33180 PF13193 AMP-binding enzyme C-terminal domain RAM_33185 PF00561 alpha/beta hydrolase fold RAM_33195 PF12697 Alpha/beta hydrolase family RAM_33200 PF00196 Bacterial regulatory proteins, luxR family RAM_33200 PF00072 Response regulator receiver domain RAM_33205 PF00196 Bacterial regulatory proteins, luxR family RAM_33210 PF07690 Major Facilitator Superfamily RAM_33225 PF07690 Major Facilitator Superfamily RAM_33225 PF00083 Sugar (and other) transporter RAM_33270 PF00005 ABC transporter RAM_33280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_33280 PF07730 Histidine kinase RAM_33285 PF00196 Bacterial regulatory proteins, luxR family RAM_33285 PF00072 Response regulator receiver domain RAM_33310 PF09335 SNARE associated Golgi protein RAM_33320 PF02673 Bacitracin resistance protein BacA RAM_33350 PF00005 ABC transporter RAM_33360 PF07730 Histidine kinase RAM_33365 PF00196 Bacterial regulatory proteins, luxR family RAM_33365 PF00072 Response regulator receiver domain RAM_33375 PF01339 CheB methylesterase RAM_33375 PF00072 Response regulator receiver domain RAM_33390 PF00440 Bacterial regulatory proteins, tetR family RAM_33390 PF08359 YsiA-like protein, C-terminal region RAM_33395 PF01370 NAD dependent epimerase/dehydratase family RAM_33405 PF05368 NmrA-like family RAM_33420 PF07859 alpha/beta hydrolase fold RAM_33425 PF07859 alpha/beta hydrolase fold RAM_33430 PF07690 Major Facilitator Superfamily RAM_33435 PF00106 short chain dehydrogenase RAM_33455 PF12833 Helix-turn-helix domain RAM_33455 PF01965 DJ-1/PfpI family RAM_33480 PF00403 Heavy-metal-associated domain RAM_33490 PF08281 Sigma-70, region 4 RAM_33490 PF04542 Sigma-70 region 2 RAM_33495 PF04542 Sigma-70 region 2 RAM_33495 PF08281 Sigma-70, region 4 RAM_33505 PF01965 DJ-1/PfpI family RAM_33510 PF00005 ABC transporter RAM_33515 PF01032 FecCD transport family RAM_33530 PF00403 Heavy-metal-associated domain RAM_33545 PF13631 Cytochrome b(N-terminal)/b6/petB RAM_33635 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_33635 PF01568 Molydopterin dinucleotide binding domain RAM_33635 PF00384 Molybdopterin oxidoreductase RAM_33650 PF08240 Alcohol dehydrogenase GroES-like domain RAM_33650 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RAM_33660 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_33660 PF08240 Alcohol dehydrogenase GroES-like domain RAM_33660 PF09277 Erythronolide synthase, docking RAM_33660 PF00698 Acyl transferase domain RAM_33660 PF08990 Erythronolide synthase docking RAM_33660 PF14765 Polyketide synthase dehydratase RAM_33660 PF00550 Phosphopantetheine attachment site RAM_33660 PF08659 KR domain RAM_33660 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_33660 PF16197 Ketoacyl-synthetase C-terminal extension RAM_33675 PF00171 Aldehyde dehydrogenase family RAM_33685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_33685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_33685 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_33690 PF13378 Enolase C-terminal domain-like RAM_33690 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_33695 PF13183 4Fe-4S dicluster domain RAM_33695 PF02913 FAD linked oxidases, C-terminal domain RAM_33695 PF01565 FAD binding domain RAM_33715 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_33715 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_33725 PF00871 Acetokinase family RAM_33730 PF09364 XFP N-terminal domain RAM_33730 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase RAM_33730 PF09363 XFP C-terminal domain RAM_33740 PF04454 Encapsulating protein for peroxidase RAM_33745 PF08240 Alcohol dehydrogenase GroES-like domain RAM_33745 PF13823 Alcohol dehydrogenase GroES-associated RAM_33745 PF00107 Zinc-binding dehydrogenase RAM_33765 PF03600 Citrate transporter RAM_33770 PF00005 ABC transporter RAM_33795 PF01807 CHC2 zinc finger RAM_33795 PF08275 DNA primase catalytic core, N-terminal domain RAM_33795 PF10410 DnaB-helicase binding domain of primase RAM_33795 PF13662 Toprim domain RAM_33795 PF08278 DNA primase DnaG DnaB-binding RAM_33800 PF08281 Sigma-70, region 4 RAM_33800 PF12680 SnoaL-like domain RAM_33800 PF04542 Sigma-70 region 2 RAM_33815 PF07690 Major Facilitator Superfamily RAM_33835 PF04978 Protein of unknown function (DUF664) RAM_33855 PF01966 HD domain RAM_33855 PF13286 Phosphohydrolase-associated domain RAM_33865 PF00072 Response regulator receiver domain RAM_33865 PF00196 Bacterial regulatory proteins, luxR family RAM_33870 PF07730 Histidine kinase RAM_33880 PF00005 ABC transporter RAM_33885 PF03129 Anticodon binding domain RAM_33885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_33905 PF01022 Bacterial regulatory protein, arsR family RAM_33910 PF01475 Ferric uptake regulator family RAM_33925 PF03773 Predicted permease RAM_33935 PF01255 Putative undecaprenyl diphosphate synthase RAM_33940 PF11967 Recombination protein O N terminal RAM_33940 PF02565 Recombination protein O C terminal RAM_33950 PF06271 RDD family RAM_33970 PF07650 KH domain RAM_33970 PF01926 50S ribosome-binding GTPase RAM_33980 PF00571 CBS domain RAM_33980 PF03471 Transporter associated domain RAM_33980 PF01595 Cyclin M transmembrane N-terminal domain RAM_33985 PF02130 Uncharacterized protein family UPF0054 RAM_33990 PF02562 PhoH-like protein RAM_34000 PF01230 HIT domain RAM_34005 PF04452 RNA methyltransferase RAM_34010 PF00684 DnaJ central domain RAM_34010 PF00226 DnaJ domain RAM_34010 PF01556 DnaJ C terminal domain RAM_34015 PF01628 HrcA protein C terminal domain RAM_34040 PF00248 Aldo/keto reductase family RAM_34045 PF00171 Aldehyde dehydrogenase family RAM_34075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_34075 PF00512 His Kinase A (phospho-acceptor) domain RAM_34075 PF00672 HAMP domain RAM_34080 PF00486 Transcriptional regulatory protein, C terminal RAM_34080 PF00072 Response regulator receiver domain RAM_34085 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RAM_34095 PF01979 Amidohydrolase family RAM_34105 PF00561 alpha/beta hydrolase fold RAM_34110 PF00144 Beta-lactamase RAM_34115 PF04954 Siderophore-interacting protein RAM_34115 PF08021 Siderophore-interacting FAD-binding domain RAM_34130 PF00440 Bacterial regulatory proteins, tetR family RAM_34130 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_34135 PF00107 Zinc-binding dehydrogenase RAM_34135 PF08240 Alcohol dehydrogenase GroES-like domain RAM_34140 PF04055 Radical SAM superfamily RAM_34150 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RAM_34150 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RAM_34160 PF01507 Phosphoadenosine phosphosulfate reductase family RAM_34165 PF01507 Phosphoadenosine phosphosulfate reductase family RAM_34170 PF00009 Elongation factor Tu GTP binding domain RAM_34185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_34185 PF00183 Hsp90 protein RAM_34200 PF00378 Enoyl-CoA hydratase/isomerase RAM_34205 PF01337 Barstar (barnase inhibitor) RAM_34210 PF00545 ribonuclease RAM_34220 PF00107 Zinc-binding dehydrogenase RAM_34220 PF08240 Alcohol dehydrogenase GroES-like domain RAM_34230 PF13520 Amino acid permease RAM_34235 PF03060 Nitronate monooxygenase RAM_34245 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_34245 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_34275 PF06421 GTP-binding protein LepA C-terminus RAM_34275 PF00009 Elongation factor Tu GTP binding domain RAM_34275 PF00679 Elongation factor G C-terminus RAM_34280 PF01209 ubiE/COQ5 methyltransferase family RAM_34295 PF01649 Ribosomal protein S20 RAM_34305 PF00291 Pyridoxal-phosphate dependent enzyme RAM_34315 PF03772 Competence protein RAM_34315 PF00753 Metallo-beta-lactamase superfamily RAM_34315 PF13567 Domain of unknown function (DUF4131) RAM_34325 PF02645 Uncharacterised protein, DegV family COG1307 RAM_34335 PF00300 Histidine phosphatase superfamily (branch 1) RAM_34345 PF01467 Cytidylyltransferase-like RAM_34350 PF00271 Helicase conserved C-terminal domain RAM_34350 PF00270 DEAD/DEAH box helicase RAM_34350 PF09382 RQC domain RAM_34350 PF16124 RecQ zinc-binding RAM_34350 PF00570 HRDC domain RAM_34355 PF00083 Sugar (and other) transporter RAM_34360 PF03485 Arginyl tRNA synthetase N terminal domain RAM_34360 PF00750 tRNA synthetases class I (R) RAM_34360 PF05746 DALR anticodon binding domain RAM_34375 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_34375 PF00440 Bacterial regulatory proteins, tetR family RAM_34385 PF00696 Amino acid kinase family RAM_34385 PF01472 PUA domain RAM_34390 PF01018 GTP1/OBG RAM_34390 PF01926 50S ribosome-binding GTPase RAM_34390 PF09269 Domain of unknown function (DUF1967) RAM_34395 PF01016 Ribosomal L27 protein RAM_34400 PF00829 Ribosomal prokaryotic L21 protein RAM_34405 PF10150 Ribonuclease E/G family RAM_34405 PF10150 Ribonuclease E/G family RAM_34410 PF00082 Subtilase family RAM_34415 PF01061 ABC-2 type transporter RAM_34425 PF00005 ABC transporter RAM_34440 PF00334 Nucleoside diphosphate kinase RAM_34450 PF01804 Penicillin amidase RAM_34460 PF08245 Mur ligase middle domain RAM_34460 PF02875 Mur ligase family, glutamate ligase domain RAM_34465 PF08241 Methyltransferase domain RAM_34470 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_34480 PF12697 Alpha/beta hydrolase family RAM_34485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_34485 PF03466 LysR substrate binding domain RAM_34490 PF00133 tRNA synthetases class I (I, L, M and V) RAM_34490 PF08264 Anticodon-binding domain of tRNA RAM_34490 PF10458 Valyl tRNA synthetase tRNA binding arm RAM_34500 PF12802 MarR family RAM_34505 PF07690 Major Facilitator Superfamily RAM_34510 PF00384 Molybdopterin oxidoreductase RAM_34510 PF01568 Molydopterin dinucleotide binding domain RAM_34520 PF03816 Cell envelope-related transcriptional attenuator domain RAM_34520 PF13399 LytR cell envelope-related transcriptional attenuator RAM_34540 PF02634 FdhD/NarQ family RAM_34545 PF03055 Retinal pigment epithelial membrane protein RAM_34570 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_34570 PF06689 ClpX C4-type zinc finger RAM_34570 PF07724 AAA domain (Cdc48 subfamily) RAM_34575 PF00574 Clp protease RAM_34580 PF00574 Clp protease RAM_34585 PF05697 Bacterial trigger factor protein (TF) RAM_34585 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RAM_34585 PF05698 Bacterial trigger factor protein (TF) C-terminus RAM_34595 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_34595 PF00175 Oxidoreductase NAD-binding domain RAM_34595 PF00970 Oxidoreductase FAD-binding domain RAM_34605 PF00512 His Kinase A (phospho-acceptor) domain RAM_34605 PF00672 HAMP domain RAM_34605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_34610 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RAM_34625 PF00586 AIR synthase related protein, N-terminal domain RAM_34625 PF02769 AIR synthase related protein, C-terminal domain RAM_34630 PF00692 dUTPase RAM_34670 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RAM_34710 PF03704 Bacterial transcriptional activator domain RAM_34710 PF00931 NB-ARC domain RAM_34710 PF00486 Transcriptional regulatory protein, C terminal RAM_34720 PF07971 Glycosyl hydrolase family 92 RAM_34720 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_34725 PF13382 Adenine deaminase C-terminal domain RAM_34725 PF01979 Amidohydrolase family RAM_34735 PF13732 Domain of unknown function (DUF4162) RAM_34735 PF00005 ABC transporter RAM_34740 PF17933 Tetracyclin repressor-like, C-terminal domain RAM_34740 PF00440 Bacterial regulatory proteins, tetR family RAM_34750 PF00480 ROK family RAM_34755 PF01261 Xylose isomerase-like TIM barrel RAM_34770 PF07690 Major Facilitator Superfamily RAM_34775 PF00248 Aldo/keto reductase family RAM_34810 PF01965 DJ-1/PfpI family RAM_34815 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain RAM_34815 PF07228 Stage II sporulation protein E (SpoIIE) RAM_34820 PF09308 LuxQ, periplasmic RAM_34820 PF00072 Response regulator receiver domain RAM_34820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_34820 PF00512 His Kinase A (phospho-acceptor) domain RAM_34875 PF03466 LysR substrate binding domain RAM_34875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_34895 PF00296 Luciferase-like monooxygenase RAM_34910 PF01638 HxlR-like helix-turn-helix RAM_34915 PF16499 Alpha galactosidase A RAM_34915 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_34920 PF12680 SnoaL-like domain RAM_34925 PF00296 Luciferase-like monooxygenase RAM_34940 PF00118 TCP-1/cpn60 chaperonin family RAM_34945 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_34945 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_34945 PF06827 Zinc finger found in FPG and IleRS RAM_34950 PF02502 Ribose/Galactose Isomerase RAM_34970 PF01323 DSBA-like thioredoxin domain RAM_34975 PF01433 Peptidase family M1 domain RAM_34975 PF11838 ERAP1-like C-terminal domain RAM_34985 PF17174 Domain of unknown function (DUF5130) RAM_35005 PF00924 Mechanosensitive ion channel RAM_35010 PF01152 Bacterial-like globin RAM_35015 PF00128 Alpha amylase, catalytic domain RAM_35035 PF05088 Bacterial NAD-glutamate dehydrogenase RAM_35045 PF12848 ABC transporter RAM_35045 PF00005 ABC transporter RAM_35050 PF05425 Copper resistance protein D RAM_35050 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) RAM_35065 PF07690 Major Facilitator Superfamily RAM_35080 PF00202 Aminotransferase class-III RAM_35085 PF00732 GMC oxidoreductase RAM_35085 PF05199 GMC oxidoreductase RAM_35105 PF05199 GMC oxidoreductase RAM_35105 PF00732 GMC oxidoreductase RAM_35120 PF00578 AhpC/TSA family RAM_35140 PF00171 Aldehyde dehydrogenase family RAM_35145 PF07690 Major Facilitator Superfamily RAM_35150 PF06441 Epoxide hydrolase N terminus RAM_35170 PF01494 FAD binding domain RAM_35195 PF01039 Carboxyl transferase domain RAM_35205 PF16363 GDP-mannose 4,6 dehydratase RAM_35210 PF01613 Flavin reductase like domain RAM_35220 PF00698 Acyl transferase domain RAM_35220 PF16197 Ketoacyl-synthetase C-terminal extension RAM_35220 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_35220 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_35220 PF08659 KR domain RAM_35220 PF00550 Phosphopantetheine attachment site RAM_35225 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_35225 PF08608 Wyosine base formation RAM_35235 PF05199 GMC oxidoreductase RAM_35245 PF00067 Cytochrome P450 RAM_35270 PF12833 Helix-turn-helix domain RAM_35280 PF01638 HxlR-like helix-turn-helix RAM_35285 PF08281 Sigma-70, region 4 RAM_35285 PF04542 Sigma-70 region 2 RAM_35290 PF03795 YCII-related domain RAM_35300 PF01300 Telomere recombination RAM_35315 PF00196 Bacterial regulatory proteins, luxR family RAM_35315 PF00072 Response regulator receiver domain RAM_35325 PF12833 Helix-turn-helix domain RAM_35325 PF02311 AraC-like ligand binding domain RAM_35330 PF00072 Response regulator receiver domain RAM_35330 PF00196 Bacterial regulatory proteins, luxR family RAM_35335 PF07730 Histidine kinase RAM_35335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_35350 PF01638 HxlR-like helix-turn-helix RAM_35380 PF02583 Metal-sensitive transcriptional repressor RAM_35385 PF00403 Heavy-metal-associated domain RAM_35395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_35400 PF00561 alpha/beta hydrolase fold RAM_35405 PF00106 short chain dehydrogenase RAM_35420 PF04055 Radical SAM superfamily RAM_35445 PF07859 alpha/beta hydrolase fold RAM_35465 PF00072 Response regulator receiver domain RAM_35465 PF00486 Transcriptional regulatory protein, C terminal RAM_35470 PF00512 His Kinase A (phospho-acceptor) domain RAM_35470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_35470 PF00672 HAMP domain RAM_35485 PF00356 Bacterial regulatory proteins, lacI family RAM_35490 PF13416 Bacterial extracellular solute-binding protein RAM_35495 PF00528 Binding-protein-dependent transport system inner membrane component RAM_35500 PF00528 Binding-protein-dependent transport system inner membrane component RAM_35510 PF00486 Transcriptional regulatory protein, C terminal RAM_35510 PF00931 NB-ARC domain RAM_35510 PF03704 Bacterial transcriptional activator domain RAM_35520 PF00733 Asparagine synthase RAM_35520 PF13537 Glutamine amidotransferase domain RAM_35530 PF00480 ROK family RAM_35550 PF03466 LysR substrate binding domain RAM_35550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_35575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_35575 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_35590 PF00356 Bacterial regulatory proteins, lacI family RAM_35610 PF00486 Transcriptional regulatory protein, C terminal RAM_35610 PF00072 Response regulator receiver domain RAM_35615 PF00512 His Kinase A (phospho-acceptor) domain RAM_35615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_35625 PF13520 Amino acid permease RAM_35630 PF00795 Carbon-nitrogen hydrolase RAM_35635 PF01593 Flavin containing amine oxidoreductase RAM_35650 PF00561 alpha/beta hydrolase fold RAM_35660 PF17853 GGDEF-like domain RAM_35660 PF05651 Putative sugar diacid recognition RAM_35660 PF13556 PucR C-terminal helix-turn-helix domain RAM_35680 PF00108 Thiolase, N-terminal domain RAM_35680 PF02803 Thiolase, C-terminal domain RAM_35685 PF00501 AMP-binding enzyme RAM_35685 PF13193 AMP-binding enzyme C-terminal domain RAM_35690 PF03055 Retinal pigment epithelial membrane protein RAM_35695 PF01638 HxlR-like helix-turn-helix RAM_35710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_35710 PF03466 LysR substrate binding domain RAM_35720 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RAM_35720 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_35730 PF03301 Tryptophan 2,3-dioxygenase RAM_35740 PF02633 Creatinine amidohydrolase RAM_35745 PF13193 AMP-binding enzyme C-terminal domain RAM_35745 PF00501 AMP-binding enzyme RAM_35755 PF00378 Enoyl-CoA hydratase/isomerase RAM_35795 PF00106 short chain dehydrogenase RAM_35805 PF00196 Bacterial regulatory proteins, luxR family RAM_35815 PF13193 AMP-binding enzyme C-terminal domain RAM_35815 PF00501 AMP-binding enzyme RAM_35830 PF00270 DEAD/DEAH box helicase RAM_35830 PF11898 Domain of unknown function (DUF3418) RAM_35830 PF04408 Helicase associated domain (HA2) RAM_35830 PF00271 Helicase conserved C-terminal domain RAM_35830 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RAM_35840 PF01070 FMN-dependent dehydrogenase RAM_35845 PF03435 Saccharopine dehydrogenase NADP binding domain RAM_35850 PF00743 Flavin-binding monooxygenase-like RAM_35860 PF01374 Glycosyl hydrolase family 46 RAM_35865 PF14716 Helix-hairpin-helix domain RAM_35865 PF02811 PHP domain RAM_35865 PF14791 DNA polymerase beta thumb RAM_35875 PF07729 FCD domain RAM_35875 PF00392 Bacterial regulatory proteins, gntR family RAM_35880 PF00920 Dehydratase family RAM_35900 PF00990 Diguanylate cyclase, GGDEF domain RAM_35910 PF00291 Pyridoxal-phosphate dependent enzyme RAM_35915 PF01738 Dienelactone hydrolase family RAM_35930 PF04542 Sigma-70 region 2 RAM_35930 PF08281 Sigma-70, region 4 RAM_35950 PF01176 Translation initiation factor 1A / IF-1 RAM_35965 PF00155 Aminotransferase class I and II RAM_35965 PF00392 Bacterial regulatory proteins, gntR family RAM_35975 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_35975 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_35975 PF06827 Zinc finger found in FPG and IleRS RAM_35980 PF04978 Protein of unknown function (DUF664) RAM_35985 PF02585 GlcNAc-PI de-N-acetylase RAM_35995 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_35995 PF01008 Initiation factor 2 subunit family RAM_36010 PF00067 Cytochrome P450 RAM_36015 PF10400 Virulence activator alpha C-term RAM_36015 PF03551 Transcriptional regulator PadR-like family RAM_36020 PF00067 Cytochrome P450 RAM_36025 PF00456 Transketolase, thiamine diphosphate binding domain RAM_36030 PF17932 Tetracyclin repressor-like, C-terminal domain RAM_36030 PF00440 Bacterial regulatory proteins, tetR family RAM_36035 PF02913 FAD linked oxidases, C-terminal domain RAM_36035 PF01565 FAD binding domain RAM_36035 PF13183 4Fe-4S dicluster domain RAM_36045 PF00072 Response regulator receiver domain RAM_36045 PF00196 Bacterial regulatory proteins, luxR family RAM_36055 PF00005 ABC transporter RAM_36060 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_36060 PF00005 ABC transporter RAM_36065 PF02653 Branched-chain amino acid transport system / permease component RAM_36070 PF02653 Branched-chain amino acid transport system / permease component RAM_36085 PF13302 Acetyltransferase (GNAT) domain RAM_36090 PF07971 Glycosyl hydrolase family 92 RAM_36090 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_36095 PF01205 Uncharacterized protein family UPF0029 RAM_36095 PF09186 Domain of unknown function (DUF1949) RAM_36100 PF04898 Glutamate synthase central domain RAM_36100 PF01645 Conserved region in glutamate synthase RAM_36100 PF01493 GXGXG motif RAM_36100 PF00310 Glutamine amidotransferases class-II RAM_36105 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RAM_36105 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_36110 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family RAM_36115 PF00440 Bacterial regulatory proteins, tetR family RAM_36125 PF00480 ROK family RAM_36145 PF07685 CobB/CobQ-like glutamine amidotransferase domain RAM_36145 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_36150 PF03186 CobD/Cbib protein RAM_36155 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase RAM_36160 PF02277 Phosphoribosyltransferase RAM_36165 PF02654 Cobalamin-5-phosphate synthase RAM_36170 PF08279 HTH domain RAM_36170 PF13280 WYL domain RAM_36180 PF00155 Aminotransferase class I and II RAM_36185 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_36185 PF07685 CobB/CobQ-like glutamine amidotransferase domain RAM_36195 PF07728 AAA domain (dynein-related subfamily) RAM_36195 PF17863 AAA lid domain RAM_36195 PF13519 von Willebrand factor type A domain RAM_36200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_36205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_36210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_36210 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_36215 PF02571 Precorrin-6x reductase CbiJ/CobK RAM_36220 PF00881 Nitroreductase family RAM_36225 PF14896 EmbC C-terminal domain RAM_36225 PF04602 Mycobacterial cell wall arabinan synthesis protein RAM_36225 PF17689 Arabinosyltransferase concanavalin like domain RAM_36230 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_36235 PF02570 Precorrin-8X methylmutase RAM_36250 PF00005 ABC transporter RAM_36260 PF01381 Helix-turn-helix RAM_36270 PF02514 CobN/Magnesium Chelatase RAM_36280 PF01872 RibD C-terminal domain RAM_36280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_36295 PF00171 Aldehyde dehydrogenase family RAM_36320 PF00595 PDZ domain RAM_36320 PF13180 PDZ domain RAM_36330 PF05872 Bacterial protein of unknown function (DUF853) RAM_36335 PF00929 Exonuclease RAM_36340 PF00083 Sugar (and other) transporter RAM_36340 PF08946 Osmosensory transporter coiled coil RAM_36345 PF03734 L,D-transpeptidase catalytic domain RAM_36345 PF17964 Bacterial Ig domain RAM_36350 PF02899 Phage integrase, N-terminal SAM-like domain RAM_36350 PF00589 Phage integrase family RAM_36360 PF01555 DNA methylase RAM_36365 PF01555 DNA methylase RAM_36440 PF01494 FAD binding domain RAM_36525 PF00293 NUDIX domain RAM_36560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36560 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_36560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36565 PF00107 Zinc-binding dehydrogenase RAM_36565 PF08240 Alcohol dehydrogenase GroES-like domain RAM_36570 PF02780 Transketolase, C-terminal domain RAM_36570 PF02779 Transketolase, pyrimidine binding domain RAM_36575 PF13193 AMP-binding enzyme C-terminal domain RAM_36575 PF00501 AMP-binding enzyme RAM_36585 PF00378 Enoyl-CoA hydratase/isomerase RAM_36605 PF07690 Major Facilitator Superfamily RAM_36625 PF03328 HpcH/HpaI aldolase/citrate lyase family RAM_36630 PF00296 Luciferase-like monooxygenase RAM_36635 PF00392 Bacterial regulatory proteins, gntR family RAM_36635 PF07729 FCD domain RAM_36640 PF00171 Aldehyde dehydrogenase family RAM_36645 PF02515 CoA-transferase family III RAM_36665 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_36675 PF00067 Cytochrome P450 RAM_36685 PF14759 Reductase C-terminal RAM_36685 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_36690 PF00106 short chain dehydrogenase RAM_36695 PF02627 Carboxymuconolactone decarboxylase family RAM_36705 PF00440 Bacterial regulatory proteins, tetR family RAM_36720 PF00107 Zinc-binding dehydrogenase RAM_36720 PF08240 Alcohol dehydrogenase GroES-like domain RAM_36750 PF00005 ABC transporter RAM_36755 PF00005 ABC transporter RAM_36755 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_36770 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_36770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36775 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_36775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36780 PF00106 short chain dehydrogenase RAM_36785 PF00392 Bacterial regulatory proteins, gntR family RAM_36785 PF07729 FCD domain RAM_36800 PF00107 Zinc-binding dehydrogenase RAM_36800 PF00698 Acyl transferase domain RAM_36800 PF08240 Alcohol dehydrogenase GroES-like domain RAM_36800 PF00550 Phosphopantetheine attachment site RAM_36800 PF08659 KR domain RAM_36800 PF16197 Ketoacyl-synthetase C-terminal extension RAM_36800 PF14765 Polyketide synthase dehydratase RAM_36800 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_36800 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_36805 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_36805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36810 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_36820 PF00067 Cytochrome P450 RAM_36825 PF00378 Enoyl-CoA hydratase/isomerase RAM_36835 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_36835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36850 PF02515 CoA-transferase family III RAM_36890 PF00890 FAD binding domain RAM_36895 PF01614 Bacterial transcriptional regulator RAM_36895 PF09339 IclR helix-turn-helix domain RAM_36900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_36905 PF00561 alpha/beta hydrolase fold RAM_36910 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_36915 PF01613 Flavin reductase like domain RAM_36925 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_36925 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RAM_36930 PF02803 Thiolase, C-terminal domain RAM_36930 PF00108 Thiolase, N-terminal domain RAM_36935 PF02515 CoA-transferase family III RAM_36940 PF00378 Enoyl-CoA hydratase/isomerase RAM_36945 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_36945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36950 PF00106 short chain dehydrogenase RAM_36970 PF00501 AMP-binding enzyme RAM_36970 PF13193 AMP-binding enzyme C-terminal domain RAM_36980 PF00378 Enoyl-CoA hydratase/isomerase RAM_36985 PF00108 Thiolase, N-terminal domain RAM_36985 PF02803 Thiolase, C-terminal domain RAM_36990 PF00378 Enoyl-CoA hydratase/isomerase RAM_37005 PF02515 CoA-transferase family III RAM_37010 PF00378 Enoyl-CoA hydratase/isomerase RAM_37020 PF00809 Pterin binding enzyme RAM_37030 PF00171 Aldehyde dehydrogenase family RAM_37040 PF00067 Cytochrome P450 RAM_37050 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_37050 PF14759 Reductase C-terminal RAM_37055 PF00106 short chain dehydrogenase RAM_37060 PF00743 Flavin-binding monooxygenase-like RAM_37065 PF00743 Flavin-binding monooxygenase-like RAM_37085 PF00106 short chain dehydrogenase RAM_37100 PF00440 Bacterial regulatory proteins, tetR family RAM_37100 PF08361 MAATS-type transcriptional repressor, C-terminal region RAM_37130 PF00067 Cytochrome P450 RAM_37135 PF14759 Reductase C-terminal RAM_37135 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_37145 PF00107 Zinc-binding dehydrogenase RAM_37145 PF08240 Alcohol dehydrogenase GroES-like domain RAM_37155 PF07730 Histidine kinase RAM_37160 PF00072 Response regulator receiver domain RAM_37160 PF00196 Bacterial regulatory proteins, luxR family RAM_37165 PF00501 AMP-binding enzyme RAM_37170 PF00501 AMP-binding enzyme RAM_37180 PF13378 Enolase C-terminal domain-like RAM_37180 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_37185 PF07690 Major Facilitator Superfamily RAM_37220 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_37225 PF00083 Sugar (and other) transporter RAM_37225 PF07690 Major Facilitator Superfamily RAM_37255 PF03928 Haem-degrading RAM_37260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_37260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_37270 PF00356 Bacterial regulatory proteins, lacI family RAM_37280 PF01547 Bacterial extracellular solute-binding protein RAM_37285 PF00528 Binding-protein-dependent transport system inner membrane component RAM_37290 PF00528 Binding-protein-dependent transport system inner membrane component RAM_37300 PF00561 alpha/beta hydrolase fold RAM_37305 PF00392 Bacterial regulatory proteins, gntR family RAM_37305 PF07729 FCD domain RAM_37310 PF00561 alpha/beta hydrolase fold RAM_37325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_37325 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_37330 PF14310 Fibronectin type III-like domain RAM_37330 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_37330 PF07691 PA14 domain RAM_37330 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_37335 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_37335 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_37335 PF01842 ACT domain RAM_37340 PF08546 Ketopantoate reductase PanE/ApbA C terminal RAM_37340 PF02558 Ketopantoate reductase PanE/ApbA RAM_37345 PF00378 Enoyl-CoA hydratase/isomerase RAM_37345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_37345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_37350 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RAM_37350 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RAM_37365 PF02515 CoA-transferase family III RAM_37370 PF02798 Glutathione S-transferase, N-terminal domain RAM_37370 PF00043 Glutathione S-transferase, C-terminal domain RAM_37380 PF07690 Major Facilitator Superfamily RAM_37385 PF05681 Fumarate hydratase (Fumerase) RAM_37395 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_37395 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_37450 PF17762 HTH domain found in ParB protein RAM_37450 PF02195 ParB-like nuclease domain RAM_37470 PF11774 Lsr2 RAM_37575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_37585 PF00809 Pterin binding enzyme RAM_37635 PF06114 IrrE N-terminal-like domain RAM_37670 PF01370 NAD dependent epimerase/dehydratase family RAM_37700 PF04055 Radical SAM superfamily RAM_37705 PF04055 Radical SAM superfamily RAM_37710 PF00296 Luciferase-like monooxygenase RAM_37720 PF02805 Metal binding domain of Ada RAM_37720 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_37720 PF12833 Helix-turn-helix domain RAM_37720 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RAM_37725 PF00067 Cytochrome P450 RAM_37730 PF08281 Sigma-70, region 4 RAM_37730 PF04542 Sigma-70 region 2 RAM_37730 PF12680 SnoaL-like domain RAM_37735 PF01565 FAD binding domain RAM_37735 PF08031 Berberine and berberine like RAM_37740 PF00296 Luciferase-like monooxygenase RAM_37750 PF07690 Major Facilitator Superfamily RAM_37790 PF02011 Glycosyl hydrolase family 48 RAM_37790 PF00041 Fibronectin type III domain RAM_37790 PF00553 Cellulose binding domain RAM_37810 PF12852 Cupin RAM_37810 PF12833 Helix-turn-helix domain RAM_37820 PF00156 Phosphoribosyl transferase domain RAM_37845 PF00528 Binding-protein-dependent transport system inner membrane component RAM_37850 PF00528 Binding-protein-dependent transport system inner membrane component RAM_37855 PF00005 ABC transporter RAM_37860 PF12849 PBP superfamily domain RAM_37875 PF00440 Bacterial regulatory proteins, tetR family RAM_37880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_37880 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_37905 PF01425 Amidase RAM_37920 PF03466 LysR substrate binding domain RAM_37920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_37935 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_37935 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_37935 PF14310 Fibronectin type III-like domain RAM_37940 PF08338 Domain of unknown function (DUF1731) RAM_37940 PF01370 NAD dependent epimerase/dehydratase family RAM_37950 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_37960 PF00005 ABC transporter RAM_37965 PF02018 Carbohydrate binding domain RAM_37965 PF00759 Glycosyl hydrolase family 9 RAM_37965 PF02927 Cellulase N-terminal ig-like domain RAM_37970 PF16499 Alpha galactosidase A RAM_37970 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_38015 PF00534 Glycosyl transferases group 1 RAM_38035 PF13439 Glycosyltransferase Family 4 RAM_38035 PF00534 Glycosyl transferases group 1 RAM_38040 PF00534 Glycosyl transferases group 1 RAM_38040 PF13439 Glycosyltransferase Family 4 RAM_38050 PF02397 Bacterial sugar transferase RAM_38055 PF00535 Glycosyl transferase family 2 RAM_38065 PF02350 UDP-N-acetylglucosamine 2-epimerase RAM_38085 PF13229 Right handed beta helix region RAM_38090 PF16355 Domain of unknown function (DUF4982) RAM_38090 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_38090 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_38090 PF00703 Glycosyl hydrolases family 2 RAM_38090 PF18565 Glycoside hydrolase family 2 C-terminal domain 5 RAM_38095 PF18370 Rhamnogalacturonan I lyases beta-sheet domain RAM_38105 PF02013 Cellulose or protein binding domain RAM_38105 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_38110 PF07745 Glycosyl hydrolase family 53 RAM_38125 PF00528 Binding-protein-dependent transport system inner membrane component RAM_38130 PF00528 Binding-protein-dependent transport system inner membrane component RAM_38155 PF01740 STAS domain RAM_38170 PF12697 Alpha/beta hydrolase family RAM_38175 PF07228 Stage II sporulation protein E (SpoIIE) RAM_38175 PF00672 HAMP domain RAM_38185 PF00701 Dihydrodipicolinate synthetase family RAM_38190 PF03466 LysR substrate binding domain RAM_38190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_38195 PF01209 ubiE/COQ5 methyltransferase family RAM_38205 PF01380 SIS domain RAM_38215 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_38215 PF14759 Reductase C-terminal RAM_38230 PF00067 Cytochrome P450 RAM_38245 PF00248 Aldo/keto reductase family RAM_38250 PF00296 Luciferase-like monooxygenase RAM_38265 PF00553 Cellulose binding domain RAM_38265 PF00759 Glycosyl hydrolase family 9 RAM_38265 PF00942 Cellulose binding domain RAM_38265 PF00041 Fibronectin type III domain RAM_38270 PF02811 PHP domain RAM_38270 PF01336 OB-fold nucleic acid binding domain RAM_38270 PF14579 Helix-hairpin-helix motif RAM_38270 PF07733 Bacterial DNA polymerase III alpha NTPase domain RAM_38270 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RAM_38275 PF08281 Sigma-70, region 4 RAM_38275 PF04542 Sigma-70 region 2 RAM_38280 PF03795 YCII-related domain RAM_38290 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RAM_38290 PF01276 Orn/Lys/Arg decarboxylase, major domain RAM_38290 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RAM_38305 PF04072 Leucine carboxyl methyltransferase RAM_38310 PF00561 alpha/beta hydrolase fold RAM_38315 PF00392 Bacterial regulatory proteins, gntR family RAM_38320 PF00005 ABC transporter RAM_38340 PF10503 Esterase PHB depolymerase RAM_38345 PF00657 GDSL-like Lipase/Acylhydrolase RAM_38345 PF00404 Dockerin type I domain RAM_38355 PF00210 Ferritin-like domain RAM_38365 PF03707 Bacterial signalling protein N terminal repeat RAM_38365 PF00990 Diguanylate cyclase, GGDEF domain RAM_38365 PF00563 EAL domain RAM_38380 PF03259 Roadblock/LC7 domain RAM_38400 PF16363 GDP-mannose 4,6 dehydratase RAM_38405 PF02566 OsmC-like protein RAM_38415 PF00561 alpha/beta hydrolase fold RAM_38420 PF00196 Bacterial regulatory proteins, luxR family RAM_38425 PF07519 Tannase and feruloyl esterase RAM_38430 PF00248 Aldo/keto reductase family RAM_38435 PF01979 Amidohydrolase family RAM_38435 PF13382 Adenine deaminase C-terminal domain RAM_38460 PF01301 Glycosyl hydrolases family 35 RAM_38465 PF06964 Alpha-L-arabinofuranosidase C-terminal domain RAM_38475 PF00528 Binding-protein-dependent transport system inner membrane component RAM_38480 PF00528 Binding-protein-dependent transport system inner membrane component RAM_38485 PF00356 Bacterial regulatory proteins, lacI family RAM_38505 PF01738 Dienelactone hydrolase family RAM_38510 PF00107 Zinc-binding dehydrogenase RAM_38510 PF08240 Alcohol dehydrogenase GroES-like domain RAM_38515 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_38515 PF00440 Bacterial regulatory proteins, tetR family RAM_38525 PF02469 Fasciclin domain RAM_38535 PF10099 Anti-sigma-K factor rskA RAM_38540 PF04545 Sigma-70, region 4 RAM_38540 PF04542 Sigma-70 region 2 RAM_38545 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_38550 PF13193 AMP-binding enzyme C-terminal domain RAM_38550 PF00501 AMP-binding enzyme RAM_38555 PF00920 Dehydratase family RAM_38560 PF05173 Dihydrodipicolinate reductase, C-terminus RAM_38560 PF01113 Dihydrodipicolinate reductase, N-terminus RAM_38570 PF00732 GMC oxidoreductase RAM_38570 PF05199 GMC oxidoreductase RAM_38585 PF04542 Sigma-70 region 2 RAM_38585 PF08281 Sigma-70, region 4 RAM_38595 PF04542 Sigma-70 region 2 RAM_38595 PF08281 Sigma-70, region 4 RAM_38610 PF01979 Amidohydrolase family RAM_38615 PF00563 EAL domain RAM_38615 PF00990 Diguanylate cyclase, GGDEF domain RAM_38615 PF03707 Bacterial signalling protein N terminal repeat RAM_38620 PF04199 Putative cyclase RAM_38640 PF00553 Cellulose binding domain RAM_38640 PF00704 Glycosyl hydrolases family 18 RAM_38640 PF00041 Fibronectin type III domain RAM_38655 PF13302 Acetyltransferase (GNAT) domain RAM_38660 PF04075 F420H(2)-dependent quinone reductase RAM_38665 PF01209 ubiE/COQ5 methyltransferase family RAM_38670 PF17853 GGDEF-like domain RAM_38670 PF13556 PucR C-terminal helix-turn-helix domain RAM_38670 PF07905 Purine catabolism regulatory protein-like family RAM_38680 PF13443 Cro/C1-type HTH DNA-binding domain RAM_38690 PF11271 Porin PorA RAM_38695 PF08241 Methyltransferase domain RAM_38700 PF08323 Starch synthase catalytic domain RAM_38700 PF00534 Glycosyl transferases group 1 RAM_38725 PF11847 Alpha-(1->3)-arabinofuranosyltransferase RAM_38750 PF00392 Bacterial regulatory proteins, gntR family RAM_38755 PF02627 Carboxymuconolactone decarboxylase family RAM_38760 PF07690 Major Facilitator Superfamily RAM_38765 PF07690 Major Facilitator Superfamily RAM_38780 PF17820 PDZ domain RAM_38780 PF13180 PDZ domain RAM_38785 PF01266 FAD dependent oxidoreductase RAM_38785 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_38785 PF16350 FAD dependent oxidoreductase central domain RAM_38785 PF01571 Aminomethyltransferase folate-binding domain RAM_38790 PF00551 Formyl transferase RAM_38800 PF01571 Aminomethyltransferase folate-binding domain RAM_38800 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_38800 PF17806 Sarcosine oxidase A3 domain RAM_38800 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_38805 PF04267 Sarcosine oxidase, delta subunit family RAM_38810 PF01266 FAD dependent oxidoreductase RAM_38815 PF00464 Serine hydroxymethyltransferase RAM_38820 PF07729 FCD domain RAM_38820 PF00392 Bacterial regulatory proteins, gntR family RAM_38825 PF00355 Rieske [2Fe-2S] domain RAM_38825 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RAM_38830 PF00440 Bacterial regulatory proteins, tetR family RAM_38845 PF00732 GMC oxidoreductase RAM_38845 PF05199 GMC oxidoreductase RAM_38855 PF00355 Rieske [2Fe-2S] domain RAM_38860 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_38860 PF14759 Reductase C-terminal RAM_38870 PF00561 alpha/beta hydrolase fold RAM_38890 PF00364 Biotin-requiring enzyme RAM_38890 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAM_38890 PF02817 e3 binding domain RAM_38895 PF02779 Transketolase, pyrimidine binding domain RAM_38895 PF02780 Transketolase, C-terminal domain RAM_38900 PF00676 Dehydrogenase E1 component RAM_38915 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_38915 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_38915 PF14310 Fibronectin type III-like domain RAM_38930 PF00486 Transcriptional regulatory protein, C terminal RAM_38930 PF00072 Response regulator receiver domain RAM_38935 PF00512 His Kinase A (phospho-acceptor) domain RAM_38935 PF00989 PAS fold RAM_38935 PF16736 Single Cache-like RAM_38935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_38940 PF01494 FAD binding domain RAM_38950 PF00704 Glycosyl hydrolases family 18 RAM_38950 PF02018 Carbohydrate binding domain RAM_38950 PF00041 Fibronectin type III domain RAM_38965 PF00069 Protein kinase domain RAM_38965 PF03793 PASTA domain RAM_38985 PF01022 Bacterial regulatory protein, arsR family RAM_38995 PF04261 Dyp-type peroxidase family RAM_39000 PF05506 Domain of unknown function (DUF756) RAM_39000 PF04185 Phosphoesterase family RAM_39015 PF00072 Response regulator receiver domain RAM_39020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_39020 PF01590 GAF domain RAM_39020 PF08446 PAS fold RAM_39020 PF00360 Phytochrome region RAM_39020 PF00512 His Kinase A (phospho-acceptor) domain RAM_39025 PF00486 Transcriptional regulatory protein, C terminal RAM_39025 PF00072 Response regulator receiver domain RAM_39075 PF12697 Alpha/beta hydrolase family RAM_39080 PF13556 PucR C-terminal helix-turn-helix domain RAM_39080 PF17853 GGDEF-like domain RAM_39095 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_39095 PF16197 Ketoacyl-synthetase C-terminal extension RAM_39095 PF00550 Phosphopantetheine attachment site RAM_39095 PF08659 KR domain RAM_39095 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_39095 PF00698 Acyl transferase domain RAM_39095 PF14765 Polyketide synthase dehydratase RAM_39120 PF02470 MlaD protein RAM_39145 PF02405 Permease MlaE RAM_39165 PF13732 Domain of unknown function (DUF4162) RAM_39165 PF00005 ABC transporter RAM_39170 PF01061 ABC-2 type transporter RAM_39225 PF00440 Bacterial regulatory proteins, tetR family RAM_39230 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_39230 PF01872 RibD C-terminal domain RAM_39255 PF01636 Phosphotransferase enzyme family RAM_39260 PF00440 Bacterial regulatory proteins, tetR family RAM_39280 PF13193 AMP-binding enzyme C-terminal domain RAM_39280 PF00501 AMP-binding enzyme RAM_39285 PF00384 Molybdopterin oxidoreductase RAM_39285 PF01568 Molydopterin dinucleotide binding domain RAM_39285 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_39290 PF00296 Luciferase-like monooxygenase RAM_39300 PF01638 HxlR-like helix-turn-helix RAM_39310 PF12833 Helix-turn-helix domain RAM_39310 PF01965 DJ-1/PfpI family RAM_39320 PF00583 Acetyltransferase (GNAT) family RAM_39335 PF07690 Major Facilitator Superfamily RAM_39340 PF00561 alpha/beta hydrolase fold RAM_39380 PF03466 LysR substrate binding domain RAM_39380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_39405 PF02096 60Kd inner membrane protein RAM_39415 PF00149 Calcineurin-like phosphoesterase RAM_39425 PF01661 Macro domain RAM_39430 PF13419 Haloacid dehalogenase-like hydrolase RAM_39455 PF03259 Roadblock/LC7 domain RAM_39470 PF00501 AMP-binding enzyme RAM_39485 PF08448 PAS fold RAM_39485 PF00990 Diguanylate cyclase, GGDEF domain RAM_39500 PF13399 LytR cell envelope-related transcriptional attenuator RAM_39500 PF03816 Cell envelope-related transcriptional attenuator domain RAM_39510 PF00743 Flavin-binding monooxygenase-like RAM_39535 PF01965 DJ-1/PfpI family RAM_39535 PF12833 Helix-turn-helix domain RAM_39540 PF00248 Aldo/keto reductase family RAM_39545 PF12833 Helix-turn-helix domain RAM_39545 PF06719 AraC-type transcriptional regulator N-terminus RAM_39565 PF00578 AhpC/TSA family RAM_39575 PF01725 Ham1 family RAM_39580 PF03725 3' exoribonuclease family, domain 2 RAM_39580 PF01138 3' exoribonuclease family, domain 1 RAM_39585 PF12706 Beta-lactamase superfamily domain RAM_39590 PF01177 Asp/Glu/Hydantoin racemase RAM_39595 PF01694 Rhomboid family RAM_39605 PF01177 Asp/Glu/Hydantoin racemase RAM_39620 PF00291 Pyridoxal-phosphate dependent enzyme RAM_39625 PF02597 ThiS family RAM_39630 PF14464 Prokaryotic homologs of the JAB domain RAM_39640 PF03576 Peptidase family S58 RAM_39645 PF09438 Domain of unknown function (DUF2017) RAM_39650 PF02617 ATP-dependent Clp protease adaptor protein ClpS RAM_39655 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RAM_39655 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RAM_39660 PF00857 Isochorismatase family RAM_39665 PF01081 KDPG and KHG aldolase RAM_39675 PF02632 BioY family RAM_39680 PF13307 Helicase C-terminal domain RAM_39710 PF00115 Cytochrome C and Quinol oxidase polypeptide I RAM_39720 PF00561 alpha/beta hydrolase fold RAM_39725 PF13302 Acetyltransferase (GNAT) domain RAM_39735 PF01527 Transposase RAM_39740 PF13333 Integrase core domain RAM_39740 PF00665 Integrase core domain RAM_39740 PF13276 HTH-like domain RAM_39755 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_39760 PF01037 Lrp/AsnC ligand binding domain RAM_39770 PF01037 Lrp/AsnC ligand binding domain RAM_39775 PF00296 Luciferase-like monooxygenase RAM_39785 PF18389 TrmO C-terminal domain RAM_39785 PF01980 tRNA-methyltransferase O RAM_39790 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_39790 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_39795 PF00391 PEP-utilising enzyme, mobile domain RAM_39795 PF05524 PEP-utilising enzyme, N-terminal RAM_39795 PF03610 PTS system fructose IIA component RAM_39795 PF00381 PTS HPr component phosphorylation site RAM_39800 PF02734 DAK2 domain RAM_39805 PF02733 Dak1 domain RAM_39820 PF00474 Sodium:solute symporter family RAM_39835 PF01939 Endonuclease NucS RAM_39840 PF00293 NUDIX domain RAM_39855 PF00378 Enoyl-CoA hydratase/isomerase RAM_39860 PF01965 DJ-1/PfpI family RAM_39860 PF12833 Helix-turn-helix domain RAM_39865 PF00857 Isochorismatase family RAM_39885 PF01810 LysE type translocator RAM_39890 PF01810 LysE type translocator RAM_39900 PF01370 NAD dependent epimerase/dehydratase family RAM_39905 PF12680 SnoaL-like domain RAM_39910 PF00440 Bacterial regulatory proteins, tetR family RAM_39910 PF16859 Tetracyclin repressor-like, C-terminal domain RAM_39915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RAM_39920 PF01923 Cobalamin adenosyltransferase RAM_39925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RAM_39930 PF10739 Protein of unknown function (DUF2550) RAM_39935 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RAM_39940 PF02874 ATP synthase alpha/beta family, beta-barrel domain RAM_39940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAM_39945 PF00231 ATP synthase RAM_39950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAM_39950 PF00306 ATP synthase alpha/beta chain, C terminal domain RAM_39950 PF02874 ATP synthase alpha/beta family, beta-barrel domain RAM_39955 PF00213 ATP synthase delta (OSCP) subunit RAM_39960 PF00430 ATP synthase B/B' CF(0) RAM_39965 PF00137 ATP synthase subunit C RAM_39970 PF00119 ATP synthase A chain RAM_39980 PF00953 Glycosyl transferase family 4 RAM_39985 PF01300 Telomere recombination RAM_39995 PF05175 Methyltransferase small domain RAM_39995 PF17827 PrmC N-terminal domain RAM_40000 PF00535 Glycosyl transferase family 2 RAM_40015 PF00472 RF-1 domain RAM_40015 PF03462 PCRF domain RAM_40020 PF01197 Ribosomal protein L31 RAM_40025 PF07497 Rho termination factor, RNA-binding domain RAM_40025 PF07498 Rho termination factor, N-terminal domain RAM_40025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAM_40030 PF00288 GHMP kinases N terminal domain RAM_40035 PF00291 Pyridoxal-phosphate dependent enzyme RAM_40040 PF01842 ACT domain RAM_40040 PF00742 Homoserine dehydrogenase RAM_40040 PF03447 Homoserine dehydrogenase, NAD binding domain RAM_40045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_40045 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_40050 PF03485 Arginyl tRNA synthetase N terminal domain RAM_40050 PF00750 tRNA synthetases class I (R) RAM_40050 PF05746 DALR anticodon binding domain RAM_40070 PF01545 Cation efflux family RAM_40080 PF00106 short chain dehydrogenase RAM_40085 PF06441 Epoxide hydrolase N terminus RAM_40095 PF00107 Zinc-binding dehydrogenase RAM_40095 PF08240 Alcohol dehydrogenase GroES-like domain RAM_40105 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_40170 PF01975 Survival protein SurE RAM_40185 PF00486 Transcriptional regulatory protein, C terminal RAM_40185 PF03704 Bacterial transcriptional activator domain RAM_40185 PF00931 NB-ARC domain RAM_40190 PF00258 Flavodoxin RAM_40190 PF00175 Oxidoreductase NAD-binding domain RAM_40190 PF00067 Cytochrome P450 RAM_40190 PF00667 FAD binding domain RAM_40200 PF00295 Glycosyl hydrolases family 28 RAM_40205 PF00704 Glycosyl hydrolases family 18 RAM_40205 PF00041 Fibronectin type III domain RAM_40210 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_40210 PF16499 Alpha galactosidase A RAM_40215 PF00652 Ricin-type beta-trefoil lectin domain RAM_40215 PF03664 Glycosyl hydrolase family 62 RAM_40220 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_40220 PF00942 Cellulose binding domain RAM_40220 PF12891 Glycoside hydrolase family 44 RAM_40225 PF00480 ROK family RAM_40235 PF03664 Glycosyl hydrolase family 62 RAM_40235 PF00652 Ricin-type beta-trefoil lectin domain RAM_40240 PF00652 Ricin-type beta-trefoil lectin domain RAM_40240 PF00331 Glycosyl hydrolase family 10 RAM_40260 PF00942 Cellulose binding domain RAM_40260 PF12891 Glycoside hydrolase family 44 RAM_40260 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_40280 PF13229 Right handed beta helix region RAM_40295 PF01494 FAD binding domain RAM_40305 PF13808 DDE_Tnp_1-associated RAM_40305 PF01609 Transposase DDE domain RAM_40360 PF00202 Aminotransferase class-III RAM_40365 PF02515 CoA-transferase family III RAM_40390 PF02538 Hydantoinase B/oxoprolinase RAM_40395 PF01968 Hydantoinase/oxoprolinase RAM_40395 PF05378 Hydantoinase/oxoprolinase N-terminal region RAM_40400 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_40400 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_40400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_40410 PF06974 Protein of unknown function (DUF1298) RAM_40410 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RAM_40415 PF03070 TENA/THI-4/PQQC family RAM_40420 PF05402 Coenzyme PQQ synthesis protein D (PqqD) RAM_40425 PF04055 Radical SAM superfamily RAM_40425 PF13186 Iron-sulfur cluster-binding domain RAM_40430 PF12706 Beta-lactamase superfamily domain RAM_40445 PF01425 Amidase RAM_40450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_40475 PF00180 Isocitrate/isopropylmalate dehydrogenase RAM_40480 PF00171 Aldehyde dehydrogenase family RAM_40495 PF00248 Aldo/keto reductase family RAM_40510 PF01565 FAD binding domain RAM_40510 PF02913 FAD linked oxidases, C-terminal domain RAM_40515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_40515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_40530 PF07690 Major Facilitator Superfamily RAM_40540 PF07730 Histidine kinase RAM_40545 PF00196 Bacterial regulatory proteins, luxR family RAM_40545 PF00072 Response regulator receiver domain RAM_40550 PF03176 MMPL family RAM_40555 PF17678 Glycosyl hydrolase family 92 N-terminal domain RAM_40555 PF07971 Glycosyl hydrolase family 92 RAM_40560 PF00378 Enoyl-CoA hydratase/isomerase RAM_40560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_40560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_40565 PF00108 Thiolase, N-terminal domain RAM_40565 PF02803 Thiolase, C-terminal domain RAM_40570 PF00440 Bacterial regulatory proteins, tetR family RAM_40605 PF06772 Bacterial low temperature requirement A protein (LtrA) RAM_40610 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_40610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_40610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_40615 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_40615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_40615 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_40665 PF00293 NUDIX domain RAM_40665 PF13344 Haloacid dehalogenase-like hydrolase RAM_40680 PF00106 short chain dehydrogenase RAM_40690 PF00557 Metallopeptidase family M24 RAM_40710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_40710 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_40710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_40715 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_40715 PF00364 Biotin-requiring enzyme RAM_40715 PF00289 Biotin carboxylase, N-terminal domain RAM_40715 PF02785 Biotin carboxylase C-terminal domain RAM_40720 PF01039 Carboxyl transferase domain RAM_40725 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_40735 PF00440 Bacterial regulatory proteins, tetR family RAM_40750 PF00561 alpha/beta hydrolase fold RAM_40755 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_40760 PF01494 FAD binding domain RAM_40765 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_40785 PF13847 Methyltransferase domain RAM_40790 PF13556 PucR C-terminal helix-turn-helix domain RAM_40790 PF17853 GGDEF-like domain RAM_40790 PF06018 CodY GAF-like domain RAM_40800 PF00107 Zinc-binding dehydrogenase RAM_40800 PF08240 Alcohol dehydrogenase GroES-like domain RAM_40805 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RAM_40805 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RAM_40815 PF16527 Two-component sensor protein CpxA, periplasmic domain RAM_40815 PF00672 HAMP domain RAM_40815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_40815 PF00512 His Kinase A (phospho-acceptor) domain RAM_40825 PF00072 Response regulator receiver domain RAM_40825 PF00486 Transcriptional regulatory protein, C terminal RAM_40830 PF00005 ABC transporter RAM_40840 PF00664 ABC transporter transmembrane region RAM_40840 PF00005 ABC transporter RAM_40855 PF16870 2-oxoglutarate dehydrogenase C-terminal RAM_40855 PF00676 Dehydrogenase E1 component RAM_40855 PF16078 2-oxoglutarate dehydrogenase N-terminus RAM_40855 PF02779 Transketolase, pyrimidine binding domain RAM_40855 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAM_40860 PF00561 alpha/beta hydrolase fold RAM_40865 PF02709 N-terminal domain of galactosyltransferase RAM_40865 PF00535 Glycosyl transferase family 2 RAM_40870 PF07690 Major Facilitator Superfamily RAM_40880 PF00296 Luciferase-like monooxygenase RAM_40895 PF00528 Binding-protein-dependent transport system inner membrane component RAM_40900 PF00528 Binding-protein-dependent transport system inner membrane component RAM_40905 PF00571 CBS domain RAM_40905 PF00005 ABC transporter RAM_40915 PF00390 Malic enzyme, N-terminal domain RAM_40915 PF03949 Malic enzyme, NAD binding domain RAM_40920 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RAM_40930 PF01047 MarR family RAM_40945 PF00300 Histidine phosphatase superfamily (branch 1) RAM_40960 PF00781 Diacylglycerol kinase catalytic domain RAM_40965 PF02467 Transcription factor WhiB RAM_40970 PF07568 Histidine kinase RAM_40970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_40970 PF12282 Signal transduction histidine kinase RAM_40975 PF13490 Putative zinc-finger RAM_40980 PF04542 Sigma-70 region 2 RAM_40980 PF08281 Sigma-70, region 4 RAM_40985 PF04073 Aminoacyl-tRNA editing domain RAM_40995 PF02586 SOS response associated peptidase (SRAP) RAM_41000 PF03193 RsgA GTPase RAM_41020 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RAM_41025 PF08032 RNA 2'-O ribose methyltransferase substrate binding RAM_41025 PF00588 SpoU rRNA Methylase family RAM_41030 PF13419 Haloacid dehalogenase-like hydrolase RAM_41040 PF00067 Cytochrome P450 RAM_41045 PF07516 SecA Wing and Scaffold domain RAM_41045 PF07517 SecA DEAD-like domain RAM_41045 PF01043 SecA preprotein cross-linking domain RAM_41050 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RAM_41050 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus RAM_41060 PF10646 Sporulation and spore germination RAM_41060 PF10647 Lipoprotein LpqB beta-propeller domain RAM_41065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_41065 PF00512 His Kinase A (phospho-acceptor) domain RAM_41065 PF00672 HAMP domain RAM_41070 PF00072 Response regulator receiver domain RAM_41070 PF00486 Transcriptional regulatory protein, C terminal RAM_41075 PF00355 Rieske [2Fe-2S] domain RAM_41080 PF01614 Bacterial transcriptional regulator RAM_41080 PF09339 IclR helix-turn-helix domain RAM_41095 PF01266 FAD dependent oxidoreductase RAM_41095 PF16350 FAD dependent oxidoreductase central domain RAM_41095 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_41095 PF01571 Aminomethyltransferase folate-binding domain RAM_41100 PF02223 Thymidylate kinase RAM_41135 PF05221 S-adenosyl-L-homocysteine hydrolase RAM_41135 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RAM_41150 PF13520 Amino acid permease RAM_41160 PF03704 Bacterial transcriptional activator domain RAM_41160 PF00486 Transcriptional regulatory protein, C terminal RAM_41160 PF00931 NB-ARC domain RAM_41165 PF01238 Phosphomannose isomerase type I RAM_41175 PF03966 Trm112p-like protein RAM_41180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RAM_41180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RAM_41180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RAM_41180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RAM_41200 PF02467 Transcription factor WhiB RAM_41220 PF02585 GlcNAc-PI de-N-acetylase RAM_41225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_41225 PF00005 ABC transporter RAM_41230 PF00528 Binding-protein-dependent transport system inner membrane component RAM_41235 PF12911 N-terminal TM domain of oligopeptide transport permease C RAM_41235 PF00528 Binding-protein-dependent transport system inner membrane component RAM_41240 PF00528 Binding-protein-dependent transport system inner membrane component RAM_41250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_41270 PF00579 tRNA synthetases class I (W and Y) RAM_41280 PF00672 HAMP domain RAM_41280 PF00512 His Kinase A (phospho-acceptor) domain RAM_41280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_41285 PF00486 Transcriptional regulatory protein, C terminal RAM_41285 PF00072 Response regulator receiver domain RAM_41295 PF00005 ABC transporter RAM_41305 PF08402 TOBE domain RAM_41305 PF00005 ABC transporter RAM_41310 PF00528 Binding-protein-dependent transport system inner membrane component RAM_41320 PF01329 Pterin 4 alpha carbinolamine dehydratase RAM_41350 PF01926 50S ribosome-binding GTPase RAM_41350 PF06071 Protein of unknown function (DUF933) RAM_41355 PF02805 Metal binding domain of Ada RAM_41355 PF00730 HhH-GPD superfamily base excision DNA repair protein RAM_41355 PF12833 Helix-turn-helix domain RAM_41355 PF06029 AlkA N-terminal domain RAM_41365 PF13476 AAA domain RAM_41370 PF12320 Type 5 capsule protein repressor C-terminal domain RAM_41370 PF00149 Calcineurin-like phosphoesterase RAM_41385 PF02401 LytB protein RAM_41395 PF02601 Exonuclease VII, large subunit RAM_41395 PF13742 OB-fold nucleic acid binding domain RAM_41405 PF02609 Exonuclease VII small subunit RAM_41410 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RAM_41420 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_41425 PF00206 Lyase RAM_41425 PF10415 Fumarase C C-terminus RAM_41435 PF04675 DNA ligase N terminus RAM_41435 PF04679 ATP dependent DNA ligase C terminal region RAM_41435 PF01068 ATP dependent DNA ligase domain RAM_41450 PF00753 Metallo-beta-lactamase superfamily RAM_41470 PF00478 IMP dehydrogenase / GMP reductase domain RAM_41470 PF00571 CBS domain RAM_41475 PF01979 Amidohydrolase family RAM_41480 PF13638 PIN domain RAM_41480 PF02562 PhoH-like protein RAM_41485 PF01255 Putative undecaprenyl diphosphate synthase RAM_41490 PF03006 Haemolysin-III related RAM_41505 PF11181 Heat induced stress protein YflT RAM_41505 PF09557 Domain of unknown function (DUF2382) RAM_41515 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) RAM_41515 PF12708 Pectate lyase superfamily protein RAM_41515 PF08548 Peptidase M10 serralysin C terminal RAM_41535 PF03190 Protein of unknown function, DUF255 RAM_41550 PF17827 PrmC N-terminal domain RAM_41550 PF05175 Methyltransferase small domain RAM_41555 PF00149 Calcineurin-like phosphoesterase RAM_41565 PF02585 GlcNAc-PI de-N-acetylase RAM_41575 PF03449 Transcription elongation factor, N-terminal RAM_41575 PF01272 Transcription elongation factor, GreA/GreB, C-term RAM_41585 PF01037 Lrp/AsnC ligand binding domain RAM_41585 PF13404 AsnC-type helix-turn-helix domain RAM_41590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_41620 PF13291 ACT domain RAM_41620 PF00291 Pyridoxal-phosphate dependent enzyme RAM_41635 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_41650 PF00291 Pyridoxal-phosphate dependent enzyme RAM_41650 PF00571 CBS domain RAM_41655 PF00108 Thiolase, N-terminal domain RAM_41655 PF02803 Thiolase, C-terminal domain RAM_41680 PF00106 short chain dehydrogenase RAM_41690 PF01425 Amidase RAM_41710 PF00486 Transcriptional regulatory protein, C terminal RAM_41710 PF00498 FHA domain RAM_41710 PF03704 Bacterial transcriptional activator domain RAM_41715 PF03704 Bacterial transcriptional activator domain RAM_41715 PF00486 Transcriptional regulatory protein, C terminal RAM_41715 PF00931 NB-ARC domain RAM_41720 PF00232 Glycosyl hydrolase family 1 RAM_41725 PF00528 Binding-protein-dependent transport system inner membrane component RAM_41730 PF00528 Binding-protein-dependent transport system inner membrane component RAM_41740 PF00072 Response regulator receiver domain RAM_41740 PF00196 Bacterial regulatory proteins, luxR family RAM_41745 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_41750 PF00248 Aldo/keto reductase family RAM_41760 PF07690 Major Facilitator Superfamily RAM_41785 PF00975 Thioesterase domain RAM_41790 PF02983 Alpha-lytic protease prodomain RAM_41795 PF12833 Helix-turn-helix domain RAM_41810 PF01341 Glycosyl hydrolases family 6 RAM_41810 PF00553 Cellulose binding domain RAM_41810 PF00041 Fibronectin type III domain RAM_41815 PF00009 Elongation factor Tu GTP binding domain RAM_41815 PF03764 Elongation factor G, domain IV RAM_41815 PF00679 Elongation factor G C-terminus RAM_41825 PF00672 HAMP domain RAM_41825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_41825 PF00512 His Kinase A (phospho-acceptor) domain RAM_41830 PF03952 Enolase, N-terminal domain RAM_41830 PF00113 Enolase, C-terminal TIM barrel domain RAM_41835 PF10502 Signal peptidase, peptidase S26 RAM_41840 PF00005 ABC transporter RAM_41840 PF00664 ABC transporter transmembrane region RAM_41870 PF00196 Bacterial regulatory proteins, luxR family RAM_41875 PF01494 FAD binding domain RAM_41885 PF00196 Bacterial regulatory proteins, luxR family RAM_41940 PF04542 Sigma-70 region 2 RAM_41940 PF08281 Sigma-70, region 4 RAM_41945 PF03793 PASTA domain RAM_41945 PF00069 Protein kinase domain RAM_41975 PF00440 Bacterial regulatory proteins, tetR family RAM_41980 PF04539 Sigma-70 region 3 RAM_41980 PF04542 Sigma-70 region 2 RAM_41980 PF04545 Sigma-70, region 4 RAM_42045 PF03167 Uracil DNA glycosylase superfamily RAM_42050 PF04493 Endonuclease V RAM_42060 PF00082 Subtilase family RAM_42065 PF00005 ABC transporter RAM_42065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_42070 PF00005 ABC transporter RAM_42070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_42085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_42090 PF02541 Ppx/GppA phosphatase family RAM_42110 PF03952 Enolase, N-terminal domain RAM_42110 PF00113 Enolase, C-terminal TIM barrel domain RAM_42135 PF03239 Iron permease FTR1 family RAM_42140 PF13473 Cupredoxin-like domain RAM_42140 PF09375 Imelysin RAM_42145 PF10518 TAT (twin-arginine translocation) pathway signal sequence RAM_42145 PF04261 Dyp-type peroxidase family RAM_42160 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_42175 PF00005 ABC transporter RAM_42185 PF04542 Sigma-70 region 2 RAM_42185 PF08281 Sigma-70, region 4 RAM_42190 PF03819 MazG nucleotide pyrophosphohydrolase domain RAM_42210 PF00271 Helicase conserved C-terminal domain RAM_42210 PF02559 CarD-like/TRCF domain RAM_42210 PF17757 UvrB interaction domain RAM_42210 PF00270 DEAD/DEAH box helicase RAM_42210 PF03461 TRCF domain RAM_42225 PF09335 SNARE associated Golgi protein RAM_42230 PF00398 Ribosomal RNA adenine dimethylase RAM_42235 PF07730 Histidine kinase RAM_42240 PF00072 Response regulator receiver domain RAM_42240 PF00196 Bacterial regulatory proteins, luxR family RAM_42245 PF07995 Glucose / Sorbosone dehydrogenase RAM_42270 PF00293 NUDIX domain RAM_42275 PF18665 Tetracyclin repressor-like, C-terminal domain RAM_42275 PF00440 Bacterial regulatory proteins, tetR family RAM_42285 PF13185 GAF domain RAM_42285 PF00563 EAL domain RAM_42285 PF00990 Diguanylate cyclase, GGDEF domain RAM_42290 PF12804 MobA-like NTP transferase domain RAM_42290 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_42295 PF14572 Phosphoribosyl synthetase-associated domain RAM_42295 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RAM_42315 PF01386 Ribosomal L25p family RAM_42315 PF14693 Ribosomal protein TL5, C-terminal domain RAM_42320 PF01195 Peptidyl-tRNA hydrolase RAM_42325 PF05103 DivIVA protein RAM_42335 PF14535 AMP-binding enzyme C-terminal domain RAM_42335 PF00501 AMP-binding enzyme RAM_42340 PF12848 ABC transporter RAM_42340 PF00005 ABC transporter RAM_42340 PF16326 ABC transporter C-terminal domain RAM_42350 PF00288 GHMP kinases N terminal domain RAM_42350 PF08544 GHMP kinases C terminal RAM_42355 PF09383 NIL domain RAM_42355 PF00005 ABC transporter RAM_42360 PF00398 Ribosomal RNA adenine dimethylase RAM_42365 PF07501 G5 domain RAM_42365 PF03990 G5-linked-Ubiquitin-like domain RAM_42365 PF06737 Transglycosylase-like domain RAM_42370 PF01026 TatD related DNase RAM_42375 PF09334 tRNA synthetases class I (M) RAM_42375 PF08264 Anticodon-binding domain of tRNA RAM_42385 PF13732 Domain of unknown function (DUF4162) RAM_42385 PF00005 ABC transporter RAM_42400 PF04715 Anthranilate synthase component I, N terminal region RAM_42400 PF00425 chorismate binding enzyme RAM_42405 PF00107 Zinc-binding dehydrogenase RAM_42405 PF08240 Alcohol dehydrogenase GroES-like domain RAM_42415 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_42420 PF16192 C-terminal four TMM region of protein-O-mannosyltransferase RAM_42420 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase RAM_42430 PF00398 Ribosomal RNA adenine dimethylase RAM_42435 PF03793 PASTA domain RAM_42435 PF00069 Protein kinase domain RAM_42440 PF13193 AMP-binding enzyme C-terminal domain RAM_42440 PF00501 AMP-binding enzyme RAM_42440 PF16177 Acetyl-coenzyme A synthetase N-terminus RAM_42445 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_42445 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_42455 PF03475 3-alpha domain RAM_42455 PF03473 MOSC domain RAM_42465 PF03358 NADPH-dependent FMN reductase RAM_42470 PF12680 SnoaL-like domain RAM_42470 PF04542 Sigma-70 region 2 RAM_42470 PF08281 Sigma-70, region 4 RAM_42505 PF03176 MMPL family RAM_42515 PF08447 PAS fold RAM_42515 PF00990 Diguanylate cyclase, GGDEF domain RAM_42515 PF00563 EAL domain RAM_42515 PF08448 PAS fold RAM_42520 PF00067 Cytochrome P450 RAM_42525 PF13614 AAA domain RAM_42540 PF05368 NmrA-like family RAM_42550 PF00486 Transcriptional regulatory protein, C terminal RAM_42550 PF00072 Response regulator receiver domain RAM_42555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_42555 PF00512 His Kinase A (phospho-acceptor) domain RAM_42555 PF00672 HAMP domain RAM_42560 PF01427 D-ala-D-ala dipeptidase RAM_42565 PF01820 D-ala D-ala ligase N-terminus RAM_42565 PF07478 D-ala D-ala ligase C-terminus RAM_42570 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_42570 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_42575 PF00291 Pyridoxal-phosphate dependent enzyme RAM_42580 PF01638 HxlR-like helix-turn-helix RAM_42585 PF00155 Aminotransferase class I and II RAM_42590 PF00550 Phosphopantetheine attachment site RAM_42590 PF00501 AMP-binding enzyme RAM_42590 PF00668 Condensation domain RAM_42590 PF08242 Methyltransferase domain RAM_42600 PF00975 Thioesterase domain RAM_42605 PF01810 LysE type translocator RAM_42615 PF00069 Protein kinase domain RAM_42615 PF03793 PASTA domain RAM_42675 PF13302 Acetyltransferase (GNAT) domain RAM_42680 PF03454 MoeA C-terminal region (domain IV) RAM_42680 PF03453 MoeA N-terminal region (domain I and II) RAM_42680 PF00994 Probable molybdopterin binding domain RAM_42685 PF00483 Nucleotidyl transferase RAM_42690 PF01812 5-formyltetrahydrofolate cyclo-ligase family RAM_42705 PF01741 Large-conductance mechanosensitive channel, MscL RAM_42715 PF00994 Probable molybdopterin binding domain RAM_42715 PF01967 MoaC family RAM_42720 PF01370 NAD dependent epimerase/dehydratase family RAM_42735 PF16736 Single Cache-like RAM_42735 PF00989 PAS fold RAM_42735 PF00512 His Kinase A (phospho-acceptor) domain RAM_42735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_42740 PF00072 Response regulator receiver domain RAM_42740 PF00486 Transcriptional regulatory protein, C terminal RAM_42750 PF00535 Glycosyl transferase family 2 RAM_42760 PF08241 Methyltransferase domain RAM_42775 PF13180 PDZ domain RAM_42780 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RAM_42780 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RAM_42785 PF00455 DeoR C terminal sensor domain RAM_42785 PF08220 DeoR-like helix-turn-helix domain RAM_42790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_42790 PF00672 HAMP domain RAM_42790 PF00512 His Kinase A (phospho-acceptor) domain RAM_42795 PF00486 Transcriptional regulatory protein, C terminal RAM_42795 PF00072 Response regulator receiver domain RAM_42800 PF03458 UPF0126 domain RAM_42805 PF00072 Response regulator receiver domain RAM_42805 PF00196 Bacterial regulatory proteins, luxR family RAM_42820 PF07690 Major Facilitator Superfamily RAM_42825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_42825 PF03466 LysR substrate binding domain RAM_42830 PF00248 Aldo/keto reductase family RAM_42835 PF00392 Bacterial regulatory proteins, gntR family RAM_42835 PF00155 Aminotransferase class I and II RAM_42850 PF00069 Protein kinase domain RAM_42850 PF03793 PASTA domain RAM_42855 PF00459 Inositol monophosphatase family RAM_42860 PF02633 Creatinine amidohydrolase RAM_42865 PF00925 GTP cyclohydrolase II RAM_42880 PF13439 Glycosyltransferase Family 4 RAM_42880 PF00534 Glycosyl transferases group 1 RAM_42900 PF04679 ATP dependent DNA ligase C terminal region RAM_42900 PF13298 DNA polymerase Ligase (LigD) RAM_42900 PF01068 ATP dependent DNA ligase domain RAM_42905 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) RAM_42910 PF03466 LysR substrate binding domain RAM_42910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_42915 PF08031 Berberine and berberine like RAM_42915 PF01565 FAD binding domain RAM_42920 PF01757 Acyltransferase family RAM_42925 PF04075 F420H(2)-dependent quinone reductase RAM_42960 PF01494 FAD binding domain RAM_42965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_42965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_42965 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_42975 PF00232 Glycosyl hydrolase family 1 RAM_42980 PF00005 ABC transporter RAM_42980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_42985 PF00528 Binding-protein-dependent transport system inner membrane component RAM_42985 PF12911 N-terminal TM domain of oligopeptide transport permease C RAM_42990 PF00528 Binding-protein-dependent transport system inner membrane component RAM_42995 PF00005 ABC transporter RAM_42995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_43000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_43010 PF00480 ROK family RAM_43010 PF01047 MarR family RAM_43015 PF00722 Glycosyl hydrolases family 16 RAM_43020 PF16483 Beta-1,3-glucanase RAM_43020 PF00652 Ricin-type beta-trefoil lectin domain RAM_43025 PF00652 Ricin-type beta-trefoil lectin domain RAM_43025 PF16483 Beta-1,3-glucanase RAM_43045 PF07286 Protein of unknown function (DUF1445) RAM_43050 PF03746 LamB/YcsF family RAM_43055 PF02682 Carboxyltransferase domain, subdomain C and D RAM_43060 PF02626 Carboxyltransferase domain, subdomain A and B RAM_43080 PF13532 2OG-Fe(II) oxygenase superfamily RAM_43085 PF00107 Zinc-binding dehydrogenase RAM_43085 PF08240 Alcohol dehydrogenase GroES-like domain RAM_43100 PF02742 Iron dependent repressor, metal binding and dimerisation domain RAM_43100 PF01325 Iron dependent repressor, N-terminal DNA binding domain RAM_43115 PF07969 Amidohydrolase family RAM_43120 PF00378 Enoyl-CoA hydratase/isomerase RAM_43125 PF00501 AMP-binding enzyme RAM_43125 PF13193 AMP-binding enzyme C-terminal domain RAM_43150 PF00425 chorismate binding enzyme RAM_43160 PF13193 AMP-binding enzyme C-terminal domain RAM_43160 PF00501 AMP-binding enzyme RAM_43165 PF13416 Bacterial extracellular solute-binding protein RAM_43170 PF00528 Binding-protein-dependent transport system inner membrane component RAM_43175 PF00528 Binding-protein-dependent transport system inner membrane component RAM_43200 PF04542 Sigma-70 region 2 RAM_43200 PF08281 Sigma-70, region 4 RAM_43200 PF12680 SnoaL-like domain RAM_43205 PF08240 Alcohol dehydrogenase GroES-like domain RAM_43205 PF00107 Zinc-binding dehydrogenase RAM_43215 PF01565 FAD binding domain RAM_43215 PF02913 FAD linked oxidases, C-terminal domain RAM_43220 PF00440 Bacterial regulatory proteins, tetR family RAM_43225 PF01266 FAD dependent oxidoreductase RAM_43225 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RAM_43240 PF13732 Domain of unknown function (DUF4162) RAM_43240 PF00005 ABC transporter RAM_43255 PF03441 FAD binding domain of DNA photolyase RAM_43255 PF00875 DNA photolyase RAM_43260 PF00285 Citrate synthase, C-terminal domain RAM_43265 PF00294 pfkB family carbohydrate kinase RAM_43275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_43275 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_43275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_43290 PF13382 Adenine deaminase C-terminal domain RAM_43290 PF01979 Amidohydrolase family RAM_43300 PF01263 Aldose 1-epimerase RAM_43305 PF00082 Subtilase family RAM_43305 PF09286 Pro-kumamolisin, activation domain RAM_43310 PF00440 Bacterial regulatory proteins, tetR family RAM_43315 PF00753 Metallo-beta-lactamase superfamily RAM_43320 PF00753 Metallo-beta-lactamase superfamily RAM_43330 PF05977 Transmembrane secretion effector RAM_43335 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RAM_43335 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_43350 PF03583 Secretory lipase RAM_43355 PF01774 UreD urease accessory protein RAM_43360 PF02492 CobW/HypB/UreG, nucleotide-binding domain RAM_43365 PF01730 UreF RAM_43370 PF00449 Urease alpha-subunit, N-terminal domain RAM_43370 PF01979 Amidohydrolase family RAM_43375 PF00699 Urease beta subunit RAM_43380 PF00547 Urease, gamma subunit RAM_43385 PF00285 Citrate synthase, C-terminal domain RAM_43395 PF00561 alpha/beta hydrolase fold RAM_43395 PF00106 short chain dehydrogenase RAM_43400 PF13732 Domain of unknown function (DUF4162) RAM_43400 PF00005 ABC transporter RAM_43410 PF05231 MASE1 RAM_43410 PF07730 Histidine kinase RAM_43410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_43415 PF00196 Bacterial regulatory proteins, luxR family RAM_43415 PF00072 Response regulator receiver domain RAM_43420 PF00144 Beta-lactamase RAM_43430 PF00266 Aminotransferase class-V RAM_43435 PF09594 Glycosyltransferase family 87 RAM_43440 PF01979 Amidohydrolase family RAM_43445 PF00005 ABC transporter RAM_43445 PF02687 FtsX-like permease family RAM_43445 PF12704 MacB-like periplasmic core domain RAM_43450 PF00005 ABC transporter RAM_43450 PF02687 FtsX-like permease family RAM_43450 PF12704 MacB-like periplasmic core domain RAM_43465 PF00486 Transcriptional regulatory protein, C terminal RAM_43465 PF00072 Response regulator receiver domain RAM_43470 PF00672 HAMP domain RAM_43470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_43470 PF00512 His Kinase A (phospho-acceptor) domain RAM_43475 PF11268 Protein of unknown function (DUF3071) RAM_43495 PF00588 SpoU rRNA Methylase family RAM_43510 PF01126 Heme oxygenase RAM_43515 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RAM_43515 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RAM_43520 PF00797 N-acetyltransferase RAM_43525 PF05977 Transmembrane secretion effector RAM_43530 PF01047 MarR family RAM_43540 PF00860 Permease family RAM_43555 PF11228 Protein of unknown function (DUF3027) RAM_43565 PF07690 Major Facilitator Superfamily RAM_43575 PF00313 'Cold-shock' DNA-binding domain RAM_43585 PF13419 Haloacid dehalogenase-like hydrolase RAM_43590 PF00440 Bacterial regulatory proteins, tetR family RAM_43590 PF02909 Tetracyclin repressor-like, C-terminal domain RAM_43595 PF00268 Ribonucleotide reductase, small chain RAM_43600 PF00501 AMP-binding enzyme RAM_43600 PF13193 AMP-binding enzyme C-terminal domain RAM_43610 PF08281 Sigma-70, region 4 RAM_43610 PF04542 Sigma-70 region 2 RAM_43615 PF03442 Carbohydrate binding domain X2 RAM_43615 PF00942 Cellulose binding domain RAM_43620 PF01434 Peptidase family M41 RAM_43620 PF17862 AAA+ lid domain RAM_43620 PF00004 ATPase family associated with various cellular activities (AAA) RAM_43620 PF06480 FtsH Extracellular RAM_43660 PF02567 Phenazine biosynthesis-like protein RAM_43665 PF03733 Inner membrane component domain RAM_43670 PF00149 Calcineurin-like phosphoesterase RAM_43675 PF13344 Haloacid dehalogenase-like hydrolase RAM_43680 PF07732 Multicopper oxidase RAM_43680 PF07731 Multicopper oxidase RAM_43685 PF00005 ABC transporter RAM_43685 PF03459 TOBE domain RAM_43690 PF00528 Binding-protein-dependent transport system inner membrane component RAM_43705 PF01047 MarR family RAM_43710 PF06463 Molybdenum Cofactor Synthesis C RAM_43710 PF04055 Radical SAM superfamily RAM_43720 PF06737 Transglycosylase-like domain RAM_43735 PF02391 MoaE protein RAM_43740 PF01967 MoaC family RAM_43745 PF00390 Malic enzyme, N-terminal domain RAM_43745 PF03949 Malic enzyme, NAD binding domain RAM_43770 PF03259 Roadblock/LC7 domain RAM_43785 PF03259 Roadblock/LC7 domain RAM_43790 PF00512 His Kinase A (phospho-acceptor) domain RAM_43790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_43790 PF08521 Two-component sensor kinase N-terminal RAM_43795 PF09084 NMT1/THI5 like RAM_43800 PF00528 Binding-protein-dependent transport system inner membrane component RAM_43805 PF00528 Binding-protein-dependent transport system inner membrane component RAM_43810 PF00005 ABC transporter RAM_43815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_43815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_43815 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_43830 PF04151 Bacterial pre-peptidase C-terminal domain RAM_43830 PF09286 Pro-kumamolisin, activation domain RAM_43850 PF03932 CutC family RAM_43870 PF04851 Type III restriction enzyme, res subunit RAM_43870 PF00271 Helicase conserved C-terminal domain RAM_43890 PF13378 Enolase C-terminal domain-like RAM_43890 PF18374 Enolase N-terminal domain-like RAM_43905 PF00118 TCP-1/cpn60 chaperonin family RAM_43910 PF00069 Protein kinase domain RAM_43910 PF13462 Thioredoxin RAM_43915 PF00313 'Cold-shock' DNA-binding domain RAM_43930 PF00994 Probable molybdopterin binding domain RAM_43930 PF03453 MoeA N-terminal region (domain I and II) RAM_43930 PF03454 MoeA C-terminal region (domain IV) RAM_43945 PF04226 Transglycosylase associated protein RAM_43955 PF02666 Phosphatidylserine decarboxylase RAM_43960 PF01066 CDP-alcohol phosphatidyltransferase RAM_43965 PF00004 ATPase family associated with various cellular activities (AAA) RAM_43965 PF17862 AAA+ lid domain RAM_43965 PF01434 Peptidase family M41 RAM_43980 PF01327 Polypeptide deformylase RAM_43985 PF09137 Glucodextranase, domain N RAM_43985 PF00723 Glycosyl hydrolases family 15 RAM_43990 PF13180 PDZ domain RAM_43995 PF01964 Radical SAM ThiC family RAM_43995 PF13667 ThiC-associated domain RAM_44000 PF08543 Phosphomethylpyrimidine kinase RAM_44010 PF08543 Phosphomethylpyrimidine kinase RAM_44015 PF01047 MarR family RAM_44020 PF05690 Thiazole biosynthesis protein ThiG RAM_44035 PF02581 Thiamine monophosphate synthase RAM_44045 PF13291 ACT domain RAM_44045 PF00291 Pyridoxal-phosphate dependent enzyme RAM_44050 PF07690 Major Facilitator Superfamily RAM_44055 PF00392 Bacterial regulatory proteins, gntR family RAM_44055 PF07702 UTRA domain RAM_44060 PF01380 SIS domain RAM_44065 PF01869 BadF/BadG/BcrA/BcrD ATPase family RAM_44075 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RAM_44105 PF00931 NB-ARC domain RAM_44105 PF00486 Transcriptional regulatory protein, C terminal RAM_44105 PF03704 Bacterial transcriptional activator domain RAM_44110 PF05721 Phytanoyl-CoA dioxygenase (PhyH) RAM_44115 PF06339 Ectoine synthase RAM_44120 PF00202 Aminotransferase class-III RAM_44125 PF00583 Acetyltransferase (GNAT) family RAM_44130 PF01734 Patatin-like phospholipase RAM_44130 PF11856 Protein of unknown function (DUF3376) RAM_44135 PF08240 Alcohol dehydrogenase GroES-like domain RAM_44135 PF00107 Zinc-binding dehydrogenase RAM_44140 PF01638 HxlR-like helix-turn-helix RAM_44145 PF04286 Protein of unknown function (DUF445) RAM_44160 PF06305 Lipopolysaccharide assembly protein A domain RAM_44185 PF00501 AMP-binding enzyme RAM_44185 PF13193 AMP-binding enzyme C-terminal domain RAM_44210 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_44210 PF14310 Fibronectin type III-like domain RAM_44210 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_44210 PF07691 PA14 domain RAM_44220 PF01638 HxlR-like helix-turn-helix RAM_44245 PF00005 ABC transporter RAM_44255 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_44260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_44270 PF13380 CoA binding domain RAM_44285 PF00741 Gas vesicle protein RAM_44290 PF00741 Gas vesicle protein RAM_44290 PF05121 Gas vesicle protein K RAM_44295 PF00741 Gas vesicle protein RAM_44305 PF00741 Gas vesicle protein RAM_44315 PF00072 Response regulator receiver domain RAM_44315 PF00486 Transcriptional regulatory protein, C terminal RAM_44320 PF00672 HAMP domain RAM_44320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_44320 PF00512 His Kinase A (phospho-acceptor) domain RAM_44325 PF07685 CobB/CobQ-like glutamine amidotransferase domain RAM_44325 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_44330 PF02875 Mur ligase family, glutamate ligase domain RAM_44330 PF08245 Mur ligase middle domain RAM_44335 PF00698 Acyl transferase domain RAM_44335 PF08240 Alcohol dehydrogenase GroES-like domain RAM_44335 PF08990 Erythronolide synthase docking RAM_44335 PF14765 Polyketide synthase dehydratase RAM_44335 PF09277 Erythronolide synthase, docking RAM_44335 PF16197 Ketoacyl-synthetase C-terminal extension RAM_44335 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_44335 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_44335 PF08659 KR domain RAM_44335 PF00550 Phosphopantetheine attachment site RAM_44340 PF18665 Tetracyclin repressor-like, C-terminal domain RAM_44340 PF00440 Bacterial regulatory proteins, tetR family RAM_44350 PF02652 L-lactate permease RAM_44360 PF08281 Sigma-70, region 4 RAM_44360 PF04542 Sigma-70 region 2 RAM_44365 PF03795 YCII-related domain RAM_44370 PF03795 YCII-related domain RAM_44390 PF00512 His Kinase A (phospho-acceptor) domain RAM_44390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_44390 PF00672 HAMP domain RAM_44430 PF04542 Sigma-70 region 2 RAM_44430 PF08281 Sigma-70, region 4 RAM_44430 PF12680 SnoaL-like domain RAM_44455 PF00082 Subtilase family RAM_44455 PF09286 Pro-kumamolisin, activation domain RAM_44470 PF13411 MerR HTH family regulatory protein RAM_44490 PF00982 Glycosyltransferase family 20 RAM_44510 PF00326 Prolyl oligopeptidase family RAM_44510 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region RAM_44515 PF04542 Sigma-70 region 2 RAM_44515 PF08281 Sigma-70, region 4 RAM_44525 PF18073 Rubredoxin metal binding domain RAM_44525 PF06745 KaiC RAM_44535 PF02559 CarD-like/TRCF domain RAM_44540 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RAM_44545 PF02542 YgbB family RAM_44565 PF09190 DALR domain RAM_44565 PF01406 tRNA synthetases class I (C) catalytic domain RAM_44570 PF08032 RNA 2'-O ribose methyltransferase substrate binding RAM_44570 PF00588 SpoU rRNA Methylase family RAM_44575 PF03062 MBOAT, membrane-bound O-acyltransferase family RAM_44605 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_44620 PF04286 Protein of unknown function (DUF445) RAM_44625 PF00950 ABC 3 transport family RAM_44630 PF00005 ABC transporter RAM_44635 PF01297 Zinc-uptake complex component A periplasmic RAM_44640 PF00356 Bacterial regulatory proteins, lacI family RAM_44645 PF00484 Carbonic anhydrase RAM_44650 PF06722 Protein of unknown function (DUF1205) RAM_44655 PF00730 HhH-GPD superfamily base excision DNA repair protein RAM_44655 PF00633 Helix-hairpin-helix motif RAM_44670 PF01433 Peptidase family M1 domain RAM_44670 PF11838 ERAP1-like C-terminal domain RAM_44675 PF06480 FtsH Extracellular RAM_44675 PF17862 AAA+ lid domain RAM_44675 PF00004 ATPase family associated with various cellular activities (AAA) RAM_44675 PF01434 Peptidase family M41 RAM_44680 PF03992 Antibiotic biosynthesis monooxygenase RAM_44685 PF02146 Sir2 family RAM_44740 PF00005 ABC transporter RAM_44740 PF13732 Domain of unknown function (DUF4162) RAM_44745 PF01061 ABC-2 type transporter RAM_44750 PF00196 Bacterial regulatory proteins, luxR family RAM_44760 PF01470 Pyroglutamyl peptidase RAM_44770 PF00012 Hsp70 protein RAM_44775 PF13744 Helix-turn-helix domain RAM_44780 PF05973 Phage derived protein Gp49-like (DUF891) RAM_44785 PF05973 Phage derived protein Gp49-like (DUF891) RAM_44790 PF00004 ATPase family associated with various cellular activities (AAA) RAM_44790 PF07724 AAA domain (Cdc48 subfamily) RAM_44790 PF17871 AAA lid domain RAM_44790 PF02861 Clp amino terminal domain, pathogenicity island component RAM_44790 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_44810 PF11774 Lsr2 RAM_44815 PF00152 tRNA synthetases class II (D, K and N) RAM_44815 PF01336 OB-fold nucleic acid binding domain RAM_44820 PF08241 Methyltransferase domain RAM_44825 PF03309 Type III pantothenate kinase RAM_44830 PF02261 Aspartate decarboxylase RAM_44835 PF02569 Pantoate-beta-alanine ligase RAM_44860 PF13411 MerR HTH family regulatory protein RAM_44865 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RAM_44870 PF02152 Dihydroneopterin aldolase RAM_44875 PF00809 Pterin binding enzyme RAM_44880 PF01227 GTP cyclohydrolase I RAM_44885 PF00004 ATPase family associated with various cellular activities (AAA) RAM_44885 PF01434 Peptidase family M41 RAM_44885 PF17862 AAA+ lid domain RAM_44915 PF01171 PP-loop family RAM_44915 PF09179 TilS substrate binding domain RAM_44930 PF00719 Inorganic pyrophosphatase RAM_44935 PF07690 Major Facilitator Superfamily RAM_44940 PF00464 Serine hydroxymethyltransferase RAM_44945 PF00298 Ribosomal protein L11, RNA binding domain RAM_44945 PF03946 Ribosomal protein L11, N-terminal domain RAM_44950 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_44955 PF00246 Zinc carboxypeptidase RAM_44970 PF07110 EthD domain RAM_45035 PF00392 Bacterial regulatory proteins, gntR family RAM_45035 PF07702 UTRA domain RAM_45050 PF09397 Ftsk gamma domain RAM_45050 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RAM_45050 PF17854 FtsK alpha domain RAM_45050 PF01580 FtsK/SpoIIIE family RAM_45075 PF00589 Phage integrase family RAM_45090 PF12169 DNA polymerase III subunits gamma and tau domain III RAM_45095 PF02223 Thymidylate kinase RAM_45125 PF13368 Topoisomerase C-terminal repeat RAM_45125 PF01751 Toprim domain RAM_45125 PF01131 DNA topoisomerase RAM_45145 PF03030 Inorganic H+ pyrophosphatase RAM_45150 PF00271 Helicase conserved C-terminal domain RAM_45150 PF00270 DEAD/DEAH box helicase RAM_45150 PF09369 Domain of unknown function (DUF1998) RAM_45180 PF00437 Type II/IV secretion system protein RAM_45195 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_45195 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_45200 PF07075 Protein of unknown function (DUF1343) RAM_45205 PF00144 Beta-lactamase RAM_45210 PF01380 SIS domain RAM_45210 PF01418 Helix-turn-helix domain, rpiR family RAM_45215 PF01380 SIS domain RAM_45220 PF03824 High-affinity nickel-transport protein RAM_45230 PF00156 Phosphoribosyl transferase domain RAM_45240 PF13193 AMP-binding enzyme C-terminal domain RAM_45240 PF00501 AMP-binding enzyme RAM_45240 PF16177 Acetyl-coenzyme A synthetase N-terminus RAM_45260 PF00854 POT family RAM_45265 PF06965 Na+/H+ antiporter 1 RAM_45275 PF00561 alpha/beta hydrolase fold RAM_45280 PF01494 FAD binding domain RAM_45290 PF02674 Colicin V production protein RAM_45300 PF08534 Redoxin RAM_45305 PF10576 Iron-sulfur binding domain of endonuclease III RAM_45305 PF00633 Helix-hairpin-helix motif RAM_45305 PF00730 HhH-GPD superfamily base excision DNA repair protein RAM_45315 PF00027 Cyclic nucleotide-binding domain RAM_45315 PF13545 Crp-like helix-turn-helix domain RAM_45365 PF00135 Carboxylesterase family RAM_45375 PF00753 Metallo-beta-lactamase superfamily RAM_45375 PF16123 Hydroxyacylglutathione hydrolase C-terminus RAM_45410 PF02374 Anion-transporting ATPase RAM_45415 PF13614 AAA domain RAM_45420 PF02467 Transcription factor WhiB RAM_45425 PF00912 Transglycosylase RAM_45425 PF17092 Penicillin-binding protein OB-like domain RAM_45425 PF00905 Penicillin binding protein transpeptidase domain RAM_45430 PF14032 PknH-like extracellular domain RAM_45430 PF00069 Protein kinase domain RAM_45435 PF00149 Calcineurin-like phosphoesterase RAM_45440 PF13847 Methyltransferase domain RAM_45445 PF00326 Prolyl oligopeptidase family RAM_45475 PF00535 Glycosyl transferase family 2 RAM_45480 PF02222 ATP-grasp domain RAM_45490 PF02543 Carbamoyltransferase N-terminus RAM_45490 PF16861 Carbamoyltransferase C-terminus RAM_45505 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_45510 PF00210 Ferritin-like domain RAM_45515 PF02566 OsmC-like protein RAM_45520 PF03358 NADPH-dependent FMN reductase RAM_45525 PF07859 alpha/beta hydrolase fold RAM_45540 PF07690 Major Facilitator Superfamily RAM_45555 PF01139 tRNA-splicing ligase RtcB RAM_45570 PF02774 Semialdehyde dehydrogenase, dimerisation domain RAM_45570 PF01118 Semialdehyde dehydrogenase, NAD binding domain RAM_45575 PF00696 Amino acid kinase family RAM_45575 PF01842 ACT domain RAM_45575 PF13840 ACT domain RAM_45590 PF08502 LeuA allosteric (dimerisation) domain RAM_45590 PF00682 HMGL-like RAM_45620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_45620 PF03466 LysR substrate binding domain RAM_45625 PF00892 EamA-like transporter family RAM_45630 PF09335 SNARE associated Golgi protein RAM_45640 PF03795 YCII-related domain RAM_45645 PF04542 Sigma-70 region 2 RAM_45645 PF08281 Sigma-70, region 4 RAM_45650 PF00005 ABC transporter RAM_45650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_45655 PF00005 ABC transporter RAM_45655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_45670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_45680 PF00535 Glycosyl transferase family 2 RAM_45700 PF00535 Glycosyl transferase family 2 RAM_45710 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RAM_45710 PF13457 GW (Gly-Tryp) dipeptide domain RAM_45715 PF02132 RecR protein RAM_45715 PF13662 Toprim domain RAM_45720 PF02575 YbaB/EbfC DNA-binding family RAM_45730 PF01638 HxlR-like helix-turn-helix RAM_45735 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_45740 PF13276 HTH-like domain RAM_45740 PF13333 Integrase core domain RAM_45740 PF00665 Integrase core domain RAM_45745 PF01527 Transposase RAM_45750 PF12169 DNA polymerase III subunits gamma and tau domain III RAM_45785 PF00005 ABC transporter RAM_45790 PF00528 Binding-protein-dependent transport system inner membrane component RAM_45800 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase RAM_45805 PF00672 HAMP domain RAM_45805 PF00512 His Kinase A (phospho-acceptor) domain RAM_45805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_45810 PF00486 Transcriptional regulatory protein, C terminal RAM_45810 PF00072 Response regulator receiver domain RAM_45820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_45820 PF05384 Sensor protein DegS RAM_45820 PF07730 Histidine kinase RAM_45825 PF00196 Bacterial regulatory proteins, luxR family RAM_45825 PF00072 Response regulator receiver domain RAM_45840 PF13305 Tetracyclin repressor-like, C-terminal domain RAM_45840 PF00440 Bacterial regulatory proteins, tetR family RAM_45845 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_45845 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_45845 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain RAM_45850 PF00756 Putative esterase RAM_45850 PF08310 LGFP repeat RAM_45865 PF03793 PASTA domain RAM_45865 PF00069 Protein kinase domain RAM_45890 PF01580 FtsK/SpoIIIE family RAM_45925 PF09587 Bacterial capsule synthesis protein PGA_cap RAM_45935 PF07858 Limonene-1,2-epoxide hydrolase catalytic domain RAM_45940 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RAM_45960 PF05368 NmrA-like family RAM_45970 PF14437 MafB19-like deaminase RAM_45985 PF05506 Domain of unknown function (DUF756) RAM_45985 PF04185 Phosphoesterase family RAM_45995 PF03928 Haem-degrading RAM_46005 PF02824 TGS domain RAM_46005 PF03129 Anticodon binding domain RAM_46005 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RAM_46005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_46010 PF13411 MerR HTH family regulatory protein RAM_46010 PF07739 TipAS antibiotic-recognition domain RAM_46015 PF00528 Binding-protein-dependent transport system inner membrane component RAM_46020 PF00528 Binding-protein-dependent transport system inner membrane component RAM_46025 PF08402 TOBE domain RAM_46025 PF00005 ABC transporter RAM_46035 PF07729 FCD domain RAM_46035 PF00392 Bacterial regulatory proteins, gntR family RAM_46040 PF00701 Dihydrodipicolinate synthetase family RAM_46055 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_46055 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_46065 PF13538 UvrD-like helicase C-terminal domain RAM_46095 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_46095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_46105 PF01207 Dihydrouridine synthase (Dus) RAM_46110 PF16499 Alpha galactosidase A RAM_46110 PF17801 Alpha galactosidase C-terminal beta sandwich domain RAM_46115 PF00652 Ricin-type beta-trefoil lectin domain RAM_46115 PF00331 Glycosyl hydrolase family 10 RAM_46125 PF07702 UTRA domain RAM_46125 PF00392 Bacterial regulatory proteins, gntR family RAM_46130 PF03747 ADP-ribosylglycohydrolase RAM_46135 PF00294 pfkB family carbohydrate kinase RAM_46150 PF00561 alpha/beta hydrolase fold RAM_46155 PF00293 NUDIX domain RAM_46160 PF00990 Diguanylate cyclase, GGDEF domain RAM_46160 PF00072 Response regulator receiver domain RAM_46170 PF03816 Cell envelope-related transcriptional attenuator domain RAM_46175 PF01895 PhoU domain RAM_46180 PF00005 ABC transporter RAM_46185 PF00528 Binding-protein-dependent transport system inner membrane component RAM_46190 PF00528 Binding-protein-dependent transport system inner membrane component RAM_46195 PF12849 PBP superfamily domain RAM_46200 PF00583 Acetyltransferase (GNAT) family RAM_46205 PF00486 Transcriptional regulatory protein, C terminal RAM_46225 PF00581 Rhodanese-like domain RAM_46230 PF07210 Protein of unknown function (DUF1416) RAM_46240 PF08768 Domain of unknown function (DUF1794) RAM_46245 PF02682 Carboxyltransferase domain, subdomain C and D RAM_46250 PF02626 Carboxyltransferase domain, subdomain A and B RAM_46290 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_46290 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_46300 PF00005 ABC transporter RAM_46315 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_46315 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_46330 PF00472 RF-1 domain RAM_46335 PF00586 AIR synthase related protein, N-terminal domain RAM_46335 PF02769 AIR synthase related protein, C-terminal domain RAM_46340 PF00156 Phosphoribosyl transferase domain RAM_46375 PF01183 Glycosyl hydrolases family 25 RAM_46380 PF01183 Glycosyl hydrolases family 25 RAM_46400 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RAM_46400 PF00586 AIR synthase related protein, N-terminal domain RAM_46400 PF02769 AIR synthase related protein, C-terminal domain RAM_46405 PF00005 ABC transporter RAM_46405 PF00664 ABC transporter transmembrane region RAM_46410 PF00664 ABC transporter transmembrane region RAM_46410 PF00005 ABC transporter RAM_46420 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase RAM_46425 PF05199 GMC oxidoreductase RAM_46425 PF00732 GMC oxidoreductase RAM_46430 PF00171 Aldehyde dehydrogenase family RAM_46445 PF13350 Tyrosine phosphatase family RAM_46465 PF01259 SAICAR synthetase RAM_46480 PF00005 ABC transporter RAM_46485 PF00528 Binding-protein-dependent transport system inner membrane component RAM_46490 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_46495 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_46500 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_46505 PF10397 Adenylosuccinate lyase C-terminus RAM_46505 PF00206 Lyase RAM_46510 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_46510 PF13378 Enolase C-terminal domain-like RAM_46525 PF00392 Bacterial regulatory proteins, gntR family RAM_46525 PF07729 FCD domain RAM_46545 PF01212 Beta-eliminating lyase RAM_46550 PF13419 Haloacid dehalogenase-like hydrolase RAM_46565 PF00155 Aminotransferase class I and II RAM_46570 PF01464 Transglycosylase SLT domain RAM_46600 PF02844 Phosphoribosylglycinamide synthetase, N domain RAM_46600 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RAM_46600 PF02843 Phosphoribosylglycinamide synthetase, C domain RAM_46605 PF03009 Glycerophosphoryl diester phosphodiesterase family RAM_46630 PF00294 pfkB family carbohydrate kinase RAM_46635 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RAM_46635 PF00925 GTP cyclohydrolase II RAM_46640 PF07690 Major Facilitator Superfamily RAM_46645 PF00999 Sodium/hydrogen exchanger family RAM_46650 PF00296 Luciferase-like monooxygenase RAM_46660 PF00709 Adenylosuccinate synthetase RAM_46675 PF06722 Protein of unknown function (DUF1205) RAM_46695 PF00072 Response regulator receiver domain RAM_46695 PF00990 Diguanylate cyclase, GGDEF domain RAM_46700 PF00440 Bacterial regulatory proteins, tetR family RAM_46720 PF01116 Fructose-bisphosphate aldolase class-II RAM_46730 PF00248 Aldo/keto reductase family RAM_46750 PF00743 Flavin-binding monooxygenase-like RAM_46760 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_46780 PF01979 Amidohydrolase family RAM_46790 PF09335 SNARE associated Golgi protein RAM_46795 PF01850 PIN domain RAM_46805 PF02913 FAD linked oxidases, C-terminal domain RAM_46805 PF01565 FAD binding domain RAM_46810 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_46820 PF07690 Major Facilitator Superfamily RAM_46830 PF09335 SNARE associated Golgi protein RAM_46840 PF03171 2OG-Fe(II) oxygenase superfamily RAM_46840 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RAM_46850 PF00485 Phosphoribulokinase / Uridine kinase family RAM_46855 PF00294 pfkB family carbohydrate kinase RAM_46860 PF00005 ABC transporter RAM_46865 PF02653 Branched-chain amino acid transport system / permease component RAM_46870 PF13407 Periplasmic binding protein domain RAM_46875 PF00356 Bacterial regulatory proteins, lacI family RAM_46880 PF00356 Bacterial regulatory proteins, lacI family RAM_46890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_46890 PF00384 Molybdopterin oxidoreductase RAM_46890 PF01568 Molydopterin dinucleotide binding domain RAM_46920 PF08281 Sigma-70, region 4 RAM_46920 PF04542 Sigma-70 region 2 RAM_46920 PF12680 SnoaL-like domain RAM_46925 PF00156 Phosphoribosyl transferase domain RAM_46935 PF00005 ABC transporter RAM_46940 PF00106 short chain dehydrogenase RAM_46955 PF00004 ATPase family associated with various cellular activities (AAA) RAM_46955 PF02861 Clp amino terminal domain, pathogenicity island component RAM_46955 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_46955 PF07724 AAA domain (Cdc48 subfamily) RAM_46955 PF17871 AAA lid domain RAM_46970 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_46970 PF00970 Oxidoreductase FAD-binding domain RAM_46970 PF00175 Oxidoreductase NAD-binding domain RAM_46975 PF00175 Oxidoreductase NAD-binding domain RAM_46975 PF00970 Oxidoreductase FAD-binding domain RAM_46975 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_46980 PF01738 Dienelactone hydrolase family RAM_46985 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RAM_46995 PF13411 MerR HTH family regulatory protein RAM_47000 PF00226 DnaJ domain RAM_47000 PF00684 DnaJ central domain RAM_47000 PF01556 DnaJ C terminal domain RAM_47005 PF01025 GrpE RAM_47010 PF00012 Hsp70 protein RAM_47020 PF01161 Phosphatidylethanolamine-binding protein RAM_47045 PF02665 Nitrate reductase gamma subunit RAM_47045 PF13183 4Fe-4S dicluster domain RAM_47045 PF02754 Cysteine-rich domain RAM_47060 PF00188 Cysteine-rich secretory protein family RAM_47075 PF01494 FAD binding domain RAM_47080 PF00692 dUTPase RAM_47095 PF08281 Sigma-70, region 4 RAM_47095 PF04542 Sigma-70 region 2 RAM_47100 PF03795 YCII-related domain RAM_47105 PF00067 Cytochrome P450 RAM_47130 PF00149 Calcineurin-like phosphoesterase RAM_47135 PF00364 Biotin-requiring enzyme RAM_47135 PF00561 alpha/beta hydrolase fold RAM_47140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_47140 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_47155 PF03167 Uracil DNA glycosylase superfamily RAM_47160 PF00072 Response regulator receiver domain RAM_47160 PF00196 Bacterial regulatory proteins, luxR family RAM_47165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_47165 PF12806 Acetyl-CoA dehydrogenase C-terminal like RAM_47165 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_47165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_47175 PF07690 Major Facilitator Superfamily RAM_47195 PF00166 Chaperonin 10 Kd subunit RAM_47220 PF00005 ABC transporter RAM_47225 PF00528 Binding-protein-dependent transport system inner membrane component RAM_47230 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_47235 PF04174 A circularly permuted ATPgrasp RAM_47245 PF08379 Bacterial transglutaminase-like N-terminal region RAM_47245 PF01841 Transglutaminase-like superfamily RAM_47255 PF00440 Bacterial regulatory proteins, tetR family RAM_47260 PF01546 Peptidase family M20/M25/M40 RAM_47260 PF07687 Peptidase dimerisation domain RAM_47265 PF00676 Dehydrogenase E1 component RAM_47270 PF02780 Transketolase, C-terminal domain RAM_47270 PF02779 Transketolase, pyrimidine binding domain RAM_47275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAM_47275 PF02817 e3 binding domain RAM_47275 PF00364 Biotin-requiring enzyme RAM_47285 PF00005 ABC transporter RAM_47305 PF04186 FxsA cytoplasmic membrane protein RAM_47345 PF08362 YcdC-like protein, C-terminal region RAM_47345 PF00440 Bacterial regulatory proteins, tetR family RAM_47350 PF01575 MaoC like domain RAM_47360 PF00108 Thiolase, N-terminal domain RAM_47360 PF02803 Thiolase, C-terminal domain RAM_47405 PF00474 Sodium:solute symporter family RAM_47415 PF00561 alpha/beta hydrolase fold RAM_47440 PF00005 ABC transporter RAM_47450 PF00296 Luciferase-like monooxygenase RAM_47455 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain RAM_47455 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain RAM_47470 PF01025 GrpE RAM_47480 PF00350 Dynamin family RAM_47485 PF07730 Histidine kinase RAM_47490 PF00196 Bacterial regulatory proteins, luxR family RAM_47490 PF00072 Response regulator receiver domain RAM_47505 PF00005 ABC transporter RAM_47515 PF00005 ABC transporter RAM_47530 PF02390 Putative methyltransferase RAM_47540 PF00005 ABC transporter RAM_47545 PF07730 Histidine kinase RAM_47545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_47545 PF05384 Sensor protein DegS RAM_47550 PF00196 Bacterial regulatory proteins, luxR family RAM_47550 PF00072 Response regulator receiver domain RAM_47565 PF01979 Amidohydrolase family RAM_47570 PF00106 short chain dehydrogenase RAM_47575 PF17961 Bacterial Ig domain RAM_47575 PF00746 LPXTG cell wall anchor motif RAM_47575 PF04650 YSIRK type signal peptide RAM_47575 PF17210 SdrD B-like domain RAM_47585 PF07690 Major Facilitator Superfamily RAM_47590 PF01047 MarR family RAM_47595 PF13419 Haloacid dehalogenase-like hydrolase RAM_47605 PF04542 Sigma-70 region 2 RAM_47605 PF08281 Sigma-70, region 4 RAM_47610 PF01658 Myo-inositol-1-phosphate synthase RAM_47615 PF03551 Transcriptional regulator PadR-like family RAM_47620 PF17249 Family of unknown function (DUF5318) RAM_47625 PF00905 Penicillin binding protein transpeptidase domain RAM_47625 PF00912 Transglycosylase RAM_47630 PF00905 Penicillin binding protein transpeptidase domain RAM_47630 PF00912 Transglycosylase RAM_47635 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_47635 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_47640 PF00480 ROK family RAM_47640 PF01325 Iron dependent repressor, N-terminal DNA binding domain RAM_47650 PF01261 Xylose isomerase-like TIM barrel RAM_47670 PF01250 Ribosomal protein S6 RAM_47675 PF00436 Single-strand binding protein family RAM_47680 PF01084 Ribosomal protein S18 RAM_47685 PF01281 Ribosomal protein L9, N-terminal domain RAM_47685 PF03948 Ribosomal protein L9, C-terminal domain RAM_47710 PF00772 DnaB-like helicase N terminal domain RAM_47710 PF00772 DnaB-like helicase N terminal domain RAM_47710 PF03796 DnaB-like helicase C terminal domain RAM_47710 PF14528 LAGLIDADG-like domain RAM_47710 PF14528 LAGLIDADG-like domain RAM_47710 PF03796 DnaB-like helicase C terminal domain RAM_47725 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RAM_47740 PF01594 AI-2E family transporter RAM_47750 PF00196 Bacterial regulatory proteins, luxR family RAM_47750 PF00072 Response regulator receiver domain RAM_47765 PF07690 Major Facilitator Superfamily RAM_47770 PF02896 PEP-utilising enzyme, TIM barrel domain RAM_47770 PF00391 PEP-utilising enzyme, mobile domain RAM_47770 PF05524 PEP-utilising enzyme, N-terminal RAM_47780 PF00294 pfkB family carbohydrate kinase RAM_47830 PF00440 Bacterial regulatory proteins, tetR family RAM_47830 PF13305 Tetracyclin repressor-like, C-terminal domain RAM_47840 PF08264 Anticodon-binding domain of tRNA RAM_47840 PF09334 tRNA synthetases class I (M) RAM_47840 PF13603 Leucyl-tRNA synthetase, Domain 2 RAM_47855 PF02622 Uncharacterized ACR, COG1678 RAM_47860 PF07690 Major Facilitator Superfamily RAM_47895 PF03747 ADP-ribosylglycohydrolase RAM_47920 PF01743 Poly A polymerase head domain RAM_47920 PF13735 tRNA nucleotidyltransferase domain 2 putative RAM_47920 PF12627 Probable RNA and SrmB- binding site of polymerase A RAM_47925 PF00293 NUDIX domain RAM_47940 PF03023 Lipid II flippase MurJ RAM_47950 PF04542 Sigma-70 region 2 RAM_47950 PF08281 Sigma-70, region 4 RAM_47960 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_47965 PF00085 Thioredoxin RAM_47965 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_47970 PF01520 N-acetylmuramoyl-L-alanine amidase RAM_47970 PF01471 Putative peptidoglycan binding domain RAM_47980 PF00155 Aminotransferase class I and II RAM_47985 PF07478 D-ala D-ala ligase C-terminus RAM_47985 PF01820 D-ala D-ala ligase N-terminus RAM_47990 PF02195 ParB-like nuclease domain RAM_47990 PF17762 HTH domain found in ParB protein RAM_47995 PF13614 AAA domain RAM_48000 PF02527 rRNA small subunit methyltransferase G RAM_48015 PF02096 60Kd inner membrane protein RAM_48020 PF01809 Putative membrane protein insertion efficiency factor RAM_48025 PF00468 Ribosomal protein L34