RAM_00005 PF00308 Bacterial dnaA protein RAM_00005 PF08299 Bacterial dnaA protein helix-turn-helix RAM_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain RAM_00010 PF02767 DNA polymerase III beta subunit, central domain RAM_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain RAM_00015 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RAM_00015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_00020 PF02463 RecF/RecN/SMC N terminal domain RAM_00025 PF05258 RAM_00025 RAM_00030 PF00204 DNA gyrase B RAM_00030 PF00986 DNA gyrase B subunit, carboxyl terminus RAM_00030 PF01751 Toprim domain RAM_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A RAM_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller RAM_00040 PF12089 RAM_00040 RAM_00050 PF00589 Phage integrase family RAM_00055 PF12728 Helix-turn-helix domain RAM_00060 PF12307 RAM_00060 RAM_00095 PF13560 Helix-turn-helix domain RAM_00100 PF05729 NACHT domain RAM_00100 PF13646 HEAT repeats RAM_00115 PF09995 RAM_00115 RAM_00125 PF00005 ABC transporter RAM_00130 PF01061 RAM_00130 RAM_00135 PF00486 Transcriptional regulatory protein, C terminal RAM_00135 PF03704 Bacterial transcriptional activator domain RAM_00140 PF00067 Cytochrome P450 RAM_00145 PF00561 alpha/beta hydrolase fold RAM_00145 PF08386 TAP-like protein RAM_00150 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_00150 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RAM_00160 PF09449 Domain of unknown function (DUF2020) RAM_00175 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_00180 PF01694 Rhomboid family RAM_00185 PF10756 RAM_00185 RAM_00190 PF06781 RAM_00190 RAM_00195 PF04203 Sortase family RAM_00210 PF01061 RAM_00210 RAM_00215 PF00005 ABC transporter RAM_00220 PF07730 Histidine kinase RAM_00225 PF00072 Response regulator receiver domain RAM_00225 PF00196 Bacterial regulatory proteins, luxR family RAM_00230 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_00235 PF00117 Glutamine amidotransferase class-I RAM_00240 PF00005 ABC transporter RAM_00255 PF00069 Protein kinase domain RAM_00255 PF03793 PASTA domain RAM_00260 PF00069 Protein kinase domain RAM_00265 PF00905 Penicillin binding protein transpeptidase domain RAM_00270 PF01098 RAM_00270 RAM_00275 PF13672 Protein phosphatase 2C RAM_00280 PF00498 FHA domain RAM_00285 PF00498 FHA domain RAM_00285 PF12401 Protein of unknown function (DUF2662) RAM_00290 PF00089 Trypsin RAM_00295 PF00089 Trypsin RAM_00300 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RAM_00305 PF00754 F5/8 type C domain RAM_00305 PF01804 Penicillin amidase RAM_00310 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_00320 PF04203 Sortase family RAM_00325 PF01734 Patatin-like phospholipase RAM_00330 PF00392 Bacterial regulatory proteins, gntR family RAM_00330 PF07729 FCD domain RAM_00335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_00340 PF00528 Binding-protein-dependent transport system inner membrane component RAM_00345 PF00528 Binding-protein-dependent transport system inner membrane component RAM_00350 PF00005 ABC transporter RAM_00355 PF00005 ABC transporter RAM_00360 PF00171 Aldehyde dehydrogenase family RAM_00365 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_00370 PF01425 Amidase RAM_00375 PF01548 RAM_00375 RAM_00375 PF02371 RAM_00375 RAM_00380 PF04542 Sigma-70 region 2 RAM_00380 PF08281 Sigma-70, region 4 RAM_00390 PF03328 HpcH/HpaI aldolase/citrate lyase family RAM_00395 PF03328 HpcH/HpaI aldolase/citrate lyase family RAM_00405 PF13460 NADH(P)-binding RAM_00410 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RAM_00410 PF14572 Phosphoribosyl synthetase-associated domain RAM_00415 PF01565 FAD binding domain RAM_00415 PF04030 D-arabinono-1,4-lactone oxidase RAM_00420 PF01168 Alanine racemase, N-terminal domain RAM_00425 PF00440 Bacterial regulatory proteins, tetR family RAM_00430 PF00232 Glycosyl hydrolase family 1 RAM_00435 PF06779 RAM_00435 RAM_00435 PF07690 Major Facilitator Superfamily RAM_00455 PF13424 Tetratricopeptide repeat RAM_00455 PF13560 Helix-turn-helix domain RAM_00460 PF01636 Phosphotransferase enzyme family RAM_00465 PF05425 RAM_00465 RAM_00470 PF04234 CopC domain RAM_00475 PF07987 Domain of unkown function (DUF1775) RAM_00485 PF00528 Binding-protein-dependent transport system inner membrane component RAM_00490 PF00005 ABC transporter RAM_00495 PF00528 Binding-protein-dependent transport system inner membrane component RAM_00500 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RAM_00510 PF13482 RNase_H superfamily RAM_00515 PF03551 Transcriptional regulator PadR-like family RAM_00520 PF08241 Methyltransferase domain RAM_00525 PF00106 short chain dehydrogenase RAM_00530 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RAM_00530 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RAM_00530 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RAM_00535 PF01019 Gamma-glutamyltranspeptidase RAM_00545 PF01609 Transposase DDE domain RAM_00545 PF13808 RAM_00545 RAM_00550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_00555 PF04542 Sigma-70 region 2 RAM_00555 PF08281 Sigma-70, region 4 RAM_00560 PF07690 Major Facilitator Superfamily RAM_00565 PF13560 Helix-turn-helix domain RAM_00570 PF07730 Histidine kinase RAM_00575 PF00072 Response regulator receiver domain RAM_00575 PF00196 Bacterial regulatory proteins, luxR family RAM_00585 PF16363 RAM_00585 RAM_00590 PF05050 Methyltransferase FkbM domain RAM_00595 PF00534 Glycosyl transferases group 1 RAM_00605 PF16822 RAM_00605 RAM_00610 PF00534 Glycosyl transferases group 1 RAM_00635 PF12697 Alpha/beta hydrolase family RAM_00640 PF10898 RAM_00640 RAM_00645 PF15585 RAM_00645 RAM_00650 PF04542 Sigma-70 region 2 RAM_00650 PF13490 Putative zinc-finger RAM_00660 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_00660 PF06827 Zinc finger found in FPG and IleRS RAM_00660 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_00665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_00665 PF06580 RAM_00665 RAM_00670 PF01343 Peptidase family S49 RAM_00675 PF00722 Glycosyl hydrolases family 16 RAM_00675 PF03422 Carbohydrate binding module (family 6) RAM_00680 PF00072 Response regulator receiver domain RAM_00680 PF04397 LytTr DNA-binding domain RAM_00690 PF00474 Sodium:solute symporter family RAM_00695 PF00581 Rhodanese-like domain RAM_00700 PF14219 RAM_00700 RAM_00705 PF00440 Bacterial regulatory proteins, tetR family RAM_00715 PF07690 Major Facilitator Superfamily RAM_00720 PF02585 GlcNAc-PI de-N-acetylase RAM_00725 PF00067 Cytochrome P450 RAM_00735 PF06108 Protein of unknown function (DUF952) RAM_00740 PF04542 Sigma-70 region 2 RAM_00740 PF08281 Sigma-70, region 4 RAM_00750 PF00210 Ferritin-like domain RAM_00755 PF02274 Amidinotransferase RAM_00760 PF02517 CAAX protease self-immunity RAM_00765 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_00770 PF10615 Protein of unknown function (DUF2470) RAM_00780 PF07690 Major Facilitator Superfamily RAM_00790 PF00092 von Willebrand factor type A domain RAM_00790 PF13531 Bacterial extracellular solute-binding protein RAM_00795 PF04209 homogentisate 1,2-dioxygenase RAM_00805 PF09339 IclR helix-turn-helix domain RAM_00810 PF06197 RAM_00810 RAM_00815 PF01169 RAM_00815 RAM_00820 PF03572 Peptidase family S41 RAM_00820 PF11918 RAM_00820 RAM_00825 PF01654 RAM_00825 RAM_00830 PF02322 RAM_00830 RAM_00835 PF00005 ABC transporter RAM_00835 PF00664 ABC transporter transmembrane region RAM_00840 PF07730 Histidine kinase RAM_00840 PF13185 GAF domain RAM_00840 PF13581 Histidine kinase-like ATPase domain RAM_00845 PF00072 Response regulator receiver domain RAM_00845 PF00196 Bacterial regulatory proteins, luxR family RAM_00850 PF05901 RAM_00850 RAM_00855 PF04203 Sortase family RAM_00860 PF13625 RAM_00860 RAM_00865 PF05901 RAM_00865 RAM_00870 PF00929 Exonuclease RAM_00875 PF11225 RAM_00875 RAM_00880 PF12643 RAM_00880 RAM_00910 PF00485 Phosphoribulokinase / Uridine kinase family RAM_00915 PF01661 Macro domain RAM_00920 PF00800 Prephenate dehydratase RAM_00920 PF01842 ACT domain RAM_00925 PF00300 Histidine phosphatase superfamily (branch 1) RAM_00930 PF14016 RAM_00930 RAM_00940 PF05977 Transmembrane secretion effector RAM_00945 PF06262 Possibl zinc metallo-peptidase RAM_00950 PF13845 RAM_00950 RAM_00960 PF03738 Glutathionylspermidine synthase preATP-grasp RAM_00965 PF03994 RAM_00965 RAM_00970 PF00561 alpha/beta hydrolase fold RAM_00975 PF00202 Aminotransferase class-III RAM_00980 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_00980 PF02403 Seryl-tRNA synthetase N-terminal domain RAM_00985 PF12079 RAM_00985 RAM_00990 PF01266 FAD dependent oxidoreductase RAM_00995 PF00440 Bacterial regulatory proteins, tetR family RAM_01000 PF12680 SnoaL-like domain RAM_01005 PF01381 Helix-turn-helix RAM_01010 PF00486 Transcriptional regulatory protein, C terminal RAM_01010 PF03704 Bacterial transcriptional activator domain RAM_01010 PF13401 AAA domain RAM_01015 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_01020 PF01370 NAD dependent epimerase/dehydratase family RAM_01025 PF13579 Glycosyl transferase 4-like domain RAM_01025 PF13692 Glycosyl transferases group 1 RAM_01030 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_01035 PF04542 Sigma-70 region 2 RAM_01035 PF08281 Sigma-70, region 4 RAM_01045 PF04389 Peptidase family M28 RAM_01050 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_01055 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_01060 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_01060 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RAM_01065 PF00550 Phosphopantetheine attachment site RAM_01070 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_01075 PF00501 AMP-binding enzyme RAM_01080 PF04443 RAM_01080 RAM_01085 PF05893 Acyl-CoA reductase (LuxC) RAM_01090 PF03706 RAM_01090 RAM_01115 PF01553 Acyltransferase RAM_01120 PF08282 haloacid dehalogenase-like hydrolase RAM_01125 PF00296 Luciferase-like monooxygenase RAM_01135 PF03275 UDP-galactopyranose mutase RAM_01135 PF13450 NAD(P)-binding Rossmann-like domain RAM_01140 PF01569 PAP2 superfamily RAM_01145 PF01040 UbiA prenyltransferase family RAM_01160 PF00106 short chain dehydrogenase RAM_01165 PF01565 FAD binding domain RAM_01165 PF04030 D-arabinono-1,4-lactone oxidase RAM_01170 PF04138 RAM_01170 RAM_01175 PF13641 Glycosyltransferase like family 2 RAM_01185 PF14011 EspG family RAM_01195 PF12079 RAM_01195 RAM_01205 PF00535 Glycosyl transferase family 2 RAM_01210 PF00005 ABC transporter RAM_01215 PF01061 RAM_01215 RAM_01220 PF10759 RAM_01220 RAM_01225 PF00266 Aminotransferase class-V RAM_01230 PF00107 Zinc-binding dehydrogenase RAM_01230 PF08240 Alcohol dehydrogenase GroES-like domain RAM_01235 PF02225 PA domain RAM_01235 PF04389 Peptidase family M28 RAM_01240 PF04228 RAM_01240 RAM_01245 PF01047 MarR family RAM_01250 PF01734 Patatin-like phospholipase RAM_01255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_01260 PF10041 RAM_01260 RAM_01265 PF02615 Malate/L-lactate dehydrogenase RAM_01270 PF13275 S4 domain RAM_01280 PF00106 short chain dehydrogenase RAM_01290 PF00072 Response regulator receiver domain RAM_01290 PF09339 IclR helix-turn-helix domain RAM_01295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_01295 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RAM_01295 PF17203 RAM_01295 RAM_01300 PF00005 ABC transporter RAM_01305 PF00528 Binding-protein-dependent transport system inner membrane component RAM_01310 PF09084 NMT1/THI5 like RAM_01315 PF01828 Peptidase A4 family RAM_01320 PF07077 RAM_01320 RAM_01325 PF00196 Bacterial regulatory proteins, luxR family RAM_01325 PF13191 AAA ATPase domain RAM_01330 PF02983 Alpha-lytic protease prodomain RAM_01335 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_01340 PF01037 AsnC family RAM_01340 PF13404 AsnC-type helix-turn-helix domain RAM_01345 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_01345 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_01350 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_01350 PF00672 HAMP domain RAM_01360 PF00392 Bacterial regulatory proteins, gntR family RAM_01360 PF07729 FCD domain RAM_01370 PF01925 RAM_01370 RAM_01375 PF00155 Aminotransferase class I and II RAM_01380 PF01738 Dienelactone hydrolase family RAM_01385 PF00501 AMP-binding enzyme RAM_01385 PF13193 AMP-binding enzyme C-terminal domain RAM_01385 PF16177 RAM_01385 RAM_01390 PF09924 Uncharacterized conserved protein (DUF2156) RAM_01400 PF00553 Cellulose binding domain RAM_01400 PF00704 Glycosyl hydrolases family 18 RAM_01405 PF00553 Cellulose binding domain RAM_01405 PF00704 Glycosyl hydrolases family 18 RAM_01410 PF00202 Aminotransferase class-III RAM_01415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_01415 PF03466 LysR substrate binding domain RAM_01420 PF07721 Tetratricopeptide repeat RAM_01420 PF08238 Sel1 repeat RAM_01420 PF13374 Tetratricopeptide repeat RAM_01420 PF13432 Tetratricopeptide repeat RAM_01425 PF07510 RAM_01425 RAM_01430 PF12697 Alpha/beta hydrolase family RAM_01435 PF06725 3D domain RAM_01440 PF00881 Nitroreductase family RAM_01445 PF00248 Aldo/keto reductase family RAM_01450 PF12802 MarR family RAM_01455 PF13581 Histidine kinase-like ATPase domain RAM_01460 PF04539 Sigma-70 region 3 RAM_01460 PF04542 Sigma-70 region 2 RAM_01460 PF04545 Sigma-70, region 4 RAM_01470 PF02467 RAM_01470 RAM_01475 PF13466 STAS domain RAM_01480 PF04307 RAM_01480 RAM_01490 PF00440 Bacterial regulatory proteins, tetR family RAM_01495 PF05977 Transmembrane secretion effector RAM_01515 PF00005 ABC transporter RAM_01520 PF12802 MarR family RAM_01525 PF00440 Bacterial regulatory proteins, tetR family RAM_01530 PF13460 NADH(P)-binding RAM_01535 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_01540 PF04542 Sigma-70 region 2 RAM_01550 PF01522 Polysaccharide deacetylase RAM_01555 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_01560 PF13515 RAM_01560 RAM_01565 PF14013 RAM_01565 RAM_01570 PF02153 Prephenate dehydrogenase RAM_01575 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RAM_01575 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_01580 PF03551 Transcriptional regulator PadR-like family RAM_01580 PF10400 Virulence activator alpha C-term RAM_01585 PF01734 Patatin-like phospholipase RAM_01590 PF04672 S-adenosyl methyltransferase RAM_01595 PF01047 MarR family RAM_01600 PF07859 alpha/beta hydrolase fold RAM_01605 PF00756 Putative esterase RAM_01615 PF14325 RAM_01615 RAM_01620 PF03640 RAM_01620 RAM_01625 PF00206 Lyase RAM_01625 PF10397 Adenylosuccinate lyase C-terminus RAM_01630 PF06736 RAM_01630 RAM_01635 PF04978 Protein of unknown function (DUF664) RAM_01640 PF01345 RAM_01640 RAM_01660 PF13641 Glycosyltransferase like family 2 RAM_01670 PF00300 Histidine phosphatase superfamily (branch 1) RAM_01675 PF05426 Alginate lyase RAM_01695 PF00089 Trypsin RAM_01710 PF00069 Protein kinase domain RAM_01720 PF13279 Thioesterase-like superfamily RAM_01725 PF00465 Iron-containing alcohol dehydrogenase RAM_01730 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_01730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_01730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_01740 PF00313 'Cold-shock' DNA-binding domain RAM_01745 PF00403 Heavy-metal-associated domain RAM_01750 PF01513 ATP-NAD kinase RAM_01755 PF00676 Dehydrogenase E1 component RAM_01760 PF01590 GAF domain RAM_01770 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_01775 PF00069 Protein kinase domain RAM_01775 PF16919 RAM_01775 RAM_01790 PF00589 Phage integrase family RAM_01795 PF12728 Helix-turn-helix domain RAM_01800 PF12307 RAM_01800 RAM_01805 PF00145 C-5 cytosine-specific DNA methylase RAM_01825 PF09250 Bifunctional DNA primase/polymerase, N-terminal RAM_01835 PF00436 Single-strand binding protein family RAM_01885 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_01890 PF00293 NUDIX domain RAM_01910 PF00392 Bacterial regulatory proteins, gntR family RAM_01920 PF00293 NUDIX domain RAM_01925 PF01966 HD domain RAM_01930 PF00583 Acetyltransferase (GNAT) family RAM_01945 PF08241 Methyltransferase domain RAM_01950 PF03795 YCII-related domain RAM_01955 PF00797 N-acetyltransferase RAM_01960 PF00563 EAL domain RAM_01960 PF00990 GGDEF domain RAM_01960 PF13188 PAS domain RAM_01960 PF13426 PAS domain RAM_01975 PF12900 Pyridoxamine 5'-phosphate oxidase RAM_01980 PF00440 Bacterial regulatory proteins, tetR family RAM_01980 PF16859 RAM_01980 RAM_01985 PF00860 Permease family RAM_01990 PF01717 Cobalamin-independent synthase, Catalytic domain RAM_01995 PF07978 NIPSNAP RAM_02000 PF01614 Bacterial transcriptional regulator RAM_02000 PF09339 IclR helix-turn-helix domain RAM_02005 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_02005 PF14759 Reductase C-terminal RAM_02010 PF01494 FAD binding domain RAM_02015 PF02861 Clp amino terminal domain RAM_02020 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain RAM_02020 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_02025 PF00753 Metallo-beta-lactamase superfamily RAM_02030 PF13560 Helix-turn-helix domain RAM_02035 PF04672 S-adenosyl methyltransferase RAM_02040 PF04672 S-adenosyl methyltransferase RAM_02045 PF13649 Methyltransferase domain RAM_02060 PF04149 RAM_02060 RAM_02075 PF13115 RAM_02075 RAM_02085 PF00561 alpha/beta hydrolase fold RAM_02090 PF07336 Protein of unknown function (DUF1470) RAM_02090 PF11706 CGNR zinc finger RAM_02095 PF09995 RAM_02095 RAM_02100 PF00440 Bacterial regulatory proteins, tetR family RAM_02105 PF01425 Amidase RAM_02110 PF01872 RibD C-terminal domain RAM_02115 PF00291 Pyridoxal-phosphate dependent enzyme RAM_02125 PF13672 Protein phosphatase 2C RAM_02130 PF08281 Sigma-70, region 4 RAM_02135 PF02861 Clp amino terminal domain RAM_02145 PF00155 Aminotransferase class I and II RAM_02145 PF00392 Bacterial regulatory proteins, gntR family RAM_02155 PF00155 Aminotransferase class I and II RAM_02160 PF04286 RAM_02160 RAM_02165 PF07336 Protein of unknown function (DUF1470) RAM_02165 PF11706 CGNR zinc finger RAM_02175 PF13453 RAM_02175 RAM_02185 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RAM_02190 PF01381 Helix-turn-helix RAM_02200 PF10724 RAM_02200 RAM_02205 PF04073 Aminoacyl-tRNA editing domain RAM_02210 PF02423 Ornithine cyclodeaminase/mu-crystallin family RAM_02215 PF00221 Aromatic amino acid lyase RAM_02230 PF03596 RAM_02230 RAM_02235 PF13539 D-alanyl-D-alanine carboxypeptidase RAM_02240 PF00528 Binding-protein-dependent transport system inner membrane component RAM_02245 PF00528 Binding-protein-dependent transport system inner membrane component RAM_02250 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RAM_02255 PF08241 Methyltransferase domain RAM_02260 PF01047 MarR family RAM_02265 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_02270 PF00107 Zinc-binding dehydrogenase RAM_02270 PF16884 RAM_02270 RAM_02275 PF00702 haloacid dehalogenase-like hydrolase RAM_02280 PF00440 Bacterial regulatory proteins, tetR family RAM_02285 PF00107 Zinc-binding dehydrogenase RAM_02285 PF08240 Alcohol dehydrogenase GroES-like domain RAM_02290 PF00551 Formyl transferase RAM_02295 PF07398 RAM_02295 RAM_02295 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_02300 PF09335 RAM_02300 RAM_02310 PF10698 RAM_02310 RAM_02315 PF01565 FAD binding domain RAM_02315 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RAM_02320 PF03734 L,D-transpeptidase catalytic domain RAM_02325 PF12697 Alpha/beta hydrolase family RAM_02330 PF00534 Glycosyl transferases group 1 RAM_02330 PF13439 Glycosyltransferase Family 4 RAM_02335 PF10722 Putative bacterial sensory transduction regulator RAM_02340 PF14257 RAM_02340 RAM_02345 PF00300 Histidine phosphatase superfamily (branch 1) RAM_02355 PF00248 Aldo/keto reductase family RAM_02360 PF00512 His Kinase A (phospho-acceptor) domain RAM_02360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_02365 PF00072 Response regulator receiver domain RAM_02365 PF00486 Transcriptional regulatory protein, C terminal RAM_02370 PF02541 Ppx/GppA phosphatase family RAM_02380 PF01261 Xylose isomerase-like TIM barrel RAM_02385 PF13622 Thioesterase-like superfamily RAM_02390 PF03807 NADP oxidoreductase coenzyme F420-dependent RAM_02390 PF14748 Pyrroline-5-carboxylate reductase dimerisation RAM_02395 PF12728 Helix-turn-helix domain RAM_02400 PF08213 RAM_02400 RAM_02405 PF01370 NAD dependent epimerase/dehydratase family RAM_02410 PF01553 Acyltransferase RAM_02415 PF07730 Histidine kinase RAM_02415 PF13796 RAM_02415 RAM_02420 PF00072 Response regulator receiver domain RAM_02420 PF00196 Bacterial regulatory proteins, luxR family RAM_02425 PF02517 CAAX protease self-immunity RAM_02430 PF12710 haloacid dehalogenase-like hydrolase RAM_02440 PF04542 Sigma-70 region 2 RAM_02440 PF08281 Sigma-70, region 4 RAM_02445 PF00501 AMP-binding enzyme RAM_02445 PF13193 AMP-binding enzyme C-terminal domain RAM_02450 PF05768 Glutaredoxin-like domain (DUF836) RAM_02455 PF00174 Oxidoreductase molybdopterin binding domain RAM_02460 PF02629 CoA binding domain RAM_02460 PF06971 Putative DNA-binding protein N-terminus RAM_02465 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RAM_02465 PF01488 Shikimate / quinate 5-dehydrogenase RAM_02465 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RAM_02470 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RAM_02470 PF03900 Porphobilinogen deaminase, C-terminal domain RAM_02475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_02475 PF02602 Uroporphyrinogen-III synthase HemD RAM_02480 PF01370 NAD dependent epimerase/dehydratase family RAM_02485 PF12833 Helix-turn-helix domain RAM_02490 PF00490 Delta-aminolevulinic acid dehydratase RAM_02510 PF13437 HlyD family secretion protein RAM_02510 PF13533 Biotin-lipoyl like RAM_02515 PF00005 ABC transporter RAM_02520 PF02687 RAM_02520 RAM_02520 PF12704 MacB-like periplasmic core domain RAM_02530 PF03073 TspO/MBR family RAM_02535 PF00202 Aminotransferase class-III RAM_02540 PF00300 Histidine phosphatase superfamily (branch 1) RAM_02545 PF00578 AhpC/TSA family RAM_02550 PF02683 RAM_02550 RAM_02555 PF05140 RAM_02555 RAM_02560 PF01578 RAM_02560 RAM_02565 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_02575 PF12728 Helix-turn-helix domain RAM_02580 PF01037 AsnC family RAM_02580 PF13404 AsnC-type helix-turn-helix domain RAM_02585 PF14012 RAM_02585 RAM_02590 PF00291 Pyridoxal-phosphate dependent enzyme RAM_02595 PF01040 UbiA prenyltransferase family RAM_02605 PF00501 AMP-binding enzyme RAM_02605 PF13193 AMP-binding enzyme C-terminal domain RAM_02610 PF00378 Enoyl-CoA hydratase/isomerase family RAM_02615 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_02615 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_02620 PF01433 Peptidase family M1 RAM_02630 PF00459 Inositol monophosphatase family RAM_02635 PF00534 Glycosyl transferases group 1 RAM_02635 PF13439 Glycosyltransferase Family 4 RAM_02640 PF00534 Glycosyl transferases group 1 RAM_02640 PF13579 Glycosyl transferase 4-like domain RAM_02645 PF00486 Transcriptional regulatory protein, C terminal RAM_02645 PF03704 Bacterial transcriptional activator domain RAM_02655 PF01209 ubiE/COQ5 methyltransferase family RAM_02660 PF01494 FAD binding domain RAM_02665 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RAM_02670 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RAM_02675 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RAM_02680 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RAM_02685 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin RAM_02690 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RAM_02690 PF10531 SLBB domain RAM_02690 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_02695 PF00384 Molybdopterin oxidoreductase RAM_02695 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RAM_02695 PF13510 2Fe-2S iron-sulfur cluster binding domain RAM_02700 PF00146 NADH dehydrogenase RAM_02705 PF12838 4Fe-4S dicluster domain RAM_02710 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RAM_02715 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RAM_02720 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains RAM_02720 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RAM_02725 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains RAM_02730 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains RAM_02735 PF14011 EspG family RAM_02755 PF00348 Polyprenyl synthetase RAM_02770 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_02775 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RAM_02775 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RAM_02780 PF00378 Enoyl-CoA hydratase/isomerase family RAM_02785 PF01037 AsnC family RAM_02785 PF13404 AsnC-type helix-turn-helix domain RAM_02790 PF02274 Amidinotransferase RAM_02795 PF01522 Polysaccharide deacetylase RAM_02800 PF07335 RAM_02800 RAM_02805 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RAM_02805 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RAM_02805 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RAM_02810 PF13579 Glycosyl transferase 4-like domain RAM_02810 PF13692 Glycosyl transferases group 1 RAM_02820 PF02706 Chain length determinant protein RAM_02825 PF00733 Asparagine synthase RAM_02825 PF13537 Glutamine amidotransferase domain RAM_02830 PF00107 Zinc-binding dehydrogenase RAM_02830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_02835 PF07940 Heparinase II/III-like protein RAM_02835 PF16889 RAM_02835 RAM_02840 PF13229 Right handed beta helix region RAM_02850 PF00534 Glycosyl transferases group 1 RAM_02850 PF13439 Glycosyltransferase Family 4 RAM_02855 PF01569 PAP2 superfamily RAM_02860 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_02865 PF13229 Right handed beta helix region RAM_02870 PF00202 Aminotransferase class-III RAM_02875 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RAM_02880 PF04230 RAM_02880 RAM_02885 PF00535 Glycosyl transferase family 2 RAM_02895 PF09940 Domain of unknown function (DUF2172) RAM_02895 PF16221 RAM_02895 RAM_02895 PF16254 RAM_02895 RAM_02900 PF01370 NAD dependent epimerase/dehydratase family RAM_02905 PF02585 GlcNAc-PI de-N-acetylase RAM_02915 PF08421 Putative zinc binding domain RAM_02915 PF08484 C-methyltransferase C-terminal domain RAM_02915 PF13489 Methyltransferase domain RAM_02920 PF10823 RAM_02920 RAM_02925 PF00296 Luciferase-like monooxygenase RAM_02935 PF01435 Peptidase family M48 RAM_02940 PF00296 Luciferase-like monooxygenase RAM_02945 PF00296 Luciferase-like monooxygenase RAM_02950 PF00483 Nucleotidyl transferase RAM_02965 PF04461 Protein of unknown function (DUF520) RAM_02975 PF08241 Methyltransferase domain RAM_02980 PF00004 ATPase family associated with various cellular activities (AAA) RAM_02980 PF02190 ATP-dependent protease La (LON) domain RAM_02980 PF05362 Lon protease (S16) C-terminal proteolytic domain RAM_02985 PF04672 S-adenosyl methyltransferase RAM_02990 PF00583 Acetyltransferase (GNAT) family RAM_02995 PF00563 EAL domain RAM_02995 PF00990 GGDEF domain RAM_02995 PF01590 GAF domain RAM_03000 PF00471 Ribosomal protein L33 RAM_03005 PF13452 N-terminal half of MaoC dehydratase RAM_03010 PF01575 MaoC like domain RAM_03015 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_03025 PF00392 Bacterial regulatory proteins, gntR family RAM_03030 PF00296 Luciferase-like monooxygenase RAM_03035 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RAM_03040 PF02357 Transcription termination factor nusG RAM_03045 PF00298 Ribosomal protein L11, RNA binding domain RAM_03045 PF03946 Ribosomal protein L11, N-terminal domain RAM_03050 PF00687 Ribosomal protein L1p/L10e family RAM_03055 PF00561 alpha/beta hydrolase fold RAM_03065 PF00466 Ribosomal protein L10 RAM_03070 PF00542 Ribosomal protein L7/L12 C-terminal domain RAM_03070 PF16320 RAM_03070 RAM_03075 PF00005 ABC transporter RAM_03080 PF02405 RAM_03080 RAM_03085 PF02405 RAM_03085 RAM_03090 PF02470 RAM_03090 RAM_03090 PF11887 RAM_03090 RAM_03095 PF02470 RAM_03095 RAM_03100 PF02470 RAM_03100 RAM_03105 PF02470 RAM_03105 RAM_03110 PF02470 RAM_03110 RAM_03110 PF11887 RAM_03110 RAM_03115 PF02470 RAM_03115 RAM_03135 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_03135 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_03150 PF00067 Cytochrome P450 RAM_03155 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_03155 PF00501 AMP-binding enzyme RAM_03155 PF00550 Phosphopantetheine attachment site RAM_03155 PF00698 Acyl transferase domain RAM_03155 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_03155 PF08659 KR domain RAM_03155 PF13193 AMP-binding enzyme C-terminal domain RAM_03155 PF16197 RAM_03155 RAM_03160 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_03160 PF00550 Phosphopantetheine attachment site RAM_03160 PF00698 Acyl transferase domain RAM_03160 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_03160 PF08659 KR domain RAM_03160 PF14765 Polyketide synthase dehydratase RAM_03160 PF16197 RAM_03160 RAM_03165 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_03165 PF00550 Phosphopantetheine attachment site RAM_03165 PF00698 Acyl transferase domain RAM_03165 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_03165 PF08659 KR domain RAM_03165 PF14765 Polyketide synthase dehydratase RAM_03165 PF16197 RAM_03165 RAM_03170 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_03170 PF00550 Phosphopantetheine attachment site RAM_03170 PF00698 Acyl transferase domain RAM_03170 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_03170 PF08659 KR domain RAM_03170 PF08990 Erythronolide synthase docking RAM_03170 PF14765 Polyketide synthase dehydratase RAM_03170 PF16197 RAM_03170 RAM_03175 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_03175 PF00550 Phosphopantetheine attachment site RAM_03175 PF00698 Acyl transferase domain RAM_03175 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_03175 PF08659 KR domain RAM_03175 PF08990 Erythronolide synthase docking RAM_03175 PF14765 Polyketide synthase dehydratase RAM_03175 PF16197 RAM_03175 RAM_03180 PF00797 N-acetyltransferase RAM_03190 PF01761 3-dehydroquinate synthase RAM_03195 PF01474 Class-II DAHP synthetase family RAM_03200 PF08501 Shikimate dehydrogenase substrate binding domain RAM_03205 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_03210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_03210 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_03215 PF13419 Haloacid dehalogenase-like hydrolase RAM_03220 PF00480 ROK family RAM_03225 PF02585 GlcNAc-PI de-N-acetylase RAM_03230 PF07859 alpha/beta hydrolase fold RAM_03235 PF07690 Major Facilitator Superfamily RAM_03240 PF00440 Bacterial regulatory proteins, tetR family RAM_03240 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_03245 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_03250 PF00067 Cytochrome P450 RAM_03255 PF00067 Cytochrome P450 RAM_03260 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_03265 PF06722 Protein of unknown function (DUF1205) RAM_03270 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RAM_03275 PF00202 Aminotransferase class-III RAM_03280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_03285 PF00296 Luciferase-like monooxygenase RAM_03290 PF00296 Luciferase-like monooxygenase RAM_03295 PF03559 NDP-hexose 2,3-dehydratase RAM_03300 PF01494 FAD binding domain RAM_03305 PF16911 RAM_03305 RAM_03310 PF00975 Thioesterase domain RAM_03315 PF00067 Cytochrome P450 RAM_03320 PF08241 Methyltransferase domain RAM_03325 PF00456 Transketolase, thiamine diphosphate binding domain RAM_03330 PF02779 Transketolase, pyrimidine binding domain RAM_03335 PF00067 Cytochrome P450 RAM_03340 PF01220 Dehydroquinase class II RAM_03345 PF00196 Bacterial regulatory proteins, luxR family RAM_03350 PF00562 RNA polymerase Rpb2, domain 6 RAM_03350 PF04560 RNA polymerase Rpb2, domain 7 RAM_03350 PF04561 RNA polymerase Rpb2, domain 2 RAM_03350 PF04563 RNA polymerase beta subunit RAM_03350 PF04565 RNA polymerase Rpb2, domain 3 RAM_03350 PF10385 RNA polymerase beta subunit external 1 domain RAM_03355 PF00623 RNA polymerase Rpb1, domain 2 RAM_03355 PF04983 RNA polymerase Rpb1, domain 3 RAM_03355 PF04997 RNA polymerase Rpb1, domain 1 RAM_03355 PF04998 RNA polymerase Rpb1, domain 5 RAM_03355 PF05000 RNA polymerase Rpb1, domain 4 RAM_03365 PF01427 D-ala-D-ala dipeptidase RAM_03370 PF01037 AsnC family RAM_03370 PF13404 AsnC-type helix-turn-helix domain RAM_03375 PF07690 Major Facilitator Superfamily RAM_03385 PF00027 Cyclic nucleotide-binding domain RAM_03385 PF13545 Crp-like helix-turn-helix domain RAM_03405 PF14362 RAM_03405 RAM_03435 PF00164 Ribosomal protein S12/S23 RAM_03440 PF00177 Ribosomal protein S7p/S5e RAM_03445 PF00009 Elongation factor Tu GTP binding domain RAM_03445 PF00679 Elongation factor G C-terminus RAM_03445 PF03144 Elongation factor Tu domain 2 RAM_03445 PF03764 Elongation factor G, domain IV RAM_03445 PF14492 Elongation Factor G, domain II RAM_03450 PF00009 Elongation factor Tu GTP binding domain RAM_03450 PF03143 Elongation factor Tu C-terminal domain RAM_03450 PF03144 Elongation factor Tu domain 2 RAM_03455 PF00338 Ribosomal protein S10p/S20e RAM_03460 PF00297 Ribosomal protein L3 RAM_03465 PF00573 Ribosomal protein L4/L1 family RAM_03470 PF00276 Ribosomal protein L23 RAM_03475 PF00181 Ribosomal Proteins L2, RNA binding domain RAM_03475 PF03947 Ribosomal Proteins L2, C-terminal domain RAM_03480 PF00203 Ribosomal protein S19 RAM_03485 PF00237 Ribosomal protein L22p/L17e RAM_03490 PF00189 Ribosomal protein S3, C-terminal domain RAM_03490 PF07650 KH domain RAM_03495 PF00252 Ribosomal protein L16p/L10e RAM_03500 PF00831 Ribosomal L29 protein RAM_03505 PF00366 Ribosomal protein S17 RAM_03510 PF00238 Ribosomal protein L14p/L23e RAM_03515 PF00467 KOW motif RAM_03515 PF17136 RAM_03515 RAM_03520 PF00281 Ribosomal protein L5 RAM_03520 PF00673 ribosomal L5P family C-terminus RAM_03525 PF00253 Ribosomal protein S14p/S29e RAM_03530 PF00410 Ribosomal protein S8 RAM_03535 PF00347 Ribosomal protein L6 RAM_03540 PF00861 Ribosomal L18p/L5e family RAM_03545 PF00333 Ribosomal protein S5, N-terminal domain RAM_03545 PF03719 Ribosomal protein S5, C-terminal domain RAM_03550 PF00327 Ribosomal protein L30p/L7e RAM_03555 PF00828 Ribosomal protein L18e/L15 RAM_03565 PF01810 RAM_03565 RAM_03570 PF00344 SecY translocase RAM_03575 PF00406 Adenylate kinase RAM_03580 PF00557 Metallopeptidase family M24 RAM_03585 PF01176 Translation initiation factor 1A / IF-1 RAM_03590 PF00444 Ribosomal protein L36 RAM_03595 PF00416 Ribosomal protein S13/S18 RAM_03605 PF00411 Ribosomal protein S11 RAM_03610 PF00163 Ribosomal protein S4/S9 N-terminal domain RAM_03610 PF01479 S4 domain RAM_03615 PF01000 RNA polymerase Rpb3/RpoA insert domain RAM_03615 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RAM_03615 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RAM_03620 PF01196 Ribosomal protein L17 RAM_03625 PF01416 tRNA pseudouridine synthase RAM_03635 PF11203 RAM_03635 RAM_03645 PF05108 Protein of unknown function (DUF690) RAM_03660 PF00082 Subtilase family RAM_03665 PF08817 WXG100 protein secretion system (Wss), protein YukD RAM_03670 PF01580 FtsK/SpoIIIE family RAM_03675 PF00012 Hsp70 protein RAM_03685 PF06013 Proteins of 100 residues with WXG RAM_03690 PF06013 Proteins of 100 residues with WXG RAM_03695 PF14230 RAM_03695 RAM_03705 PF00572 Ribosomal protein L13 RAM_03710 PF00380 Ribosomal protein S9/S16 RAM_03715 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RAM_03715 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RAM_03715 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RAM_03715 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RAM_03725 PF00501 AMP-binding enzyme RAM_03730 PF00550 Phosphopantetheine attachment site RAM_03750 PF12740 Chlorophyllase enzyme RAM_03755 PF01380 SIS domain RAM_03755 PF13522 Glutamine amidotransferase domain RAM_03760 PF01256 Carbohydrate kinase RAM_03760 PF03853 YjeF-related protein N-terminus RAM_03765 PF00455 RAM_03765 RAM_03765 PF08220 DeoR-like helix-turn-helix domain RAM_03770 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_03770 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_03775 PF00005 ABC transporter RAM_03775 PF08402 TOBE domain RAM_03780 PF00842 Alanine racemase, C-terminal domain RAM_03780 PF01168 Alanine racemase, N-terminal domain RAM_03785 PF12697 Alpha/beta hydrolase family RAM_03790 PF02367 Uncharacterised P-loop hydrolase UPF0079 RAM_03795 PF13354 Beta-lactamase enzyme family RAM_03800 PF01039 Carboxyl transferase domain RAM_03800 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RAM_03805 PF00501 AMP-binding enzyme RAM_03805 PF13193 AMP-binding enzyme C-terminal domain RAM_03810 PF00814 Glycoprotease family RAM_03815 PF00583 Acetyltransferase (GNAT) family RAM_03820 PF00814 Glycoprotease family RAM_03825 PF02350 UDP-N-acetylglucosamine 2-epimerase RAM_03840 PF09721 RAM_03840 RAM_03845 PF13641 Glycosyltransferase like family 2 RAM_03850 PF01510 N-acetylmuramoyl-L-alanine amidase RAM_03855 PF13847 Methyltransferase domain RAM_03860 PF01022 Bacterial regulatory protein, arsR family RAM_03865 PF01451 Low molecular weight phosphotyrosine protein phosphatase RAM_03870 PF01758 Sodium Bile acid symporter family RAM_03875 PF01022 Bacterial regulatory protein, arsR family RAM_03880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_03885 PF00166 Chaperonin 10 Kd subunit RAM_03890 PF00118 TCP-1/cpn60 chaperonin family RAM_03895 PF02467 RAM_03895 RAM_03900 PF13411 MerR HTH family regulatory protein RAM_03910 PF00072 Response regulator receiver domain RAM_03910 PF00196 Bacterial regulatory proteins, luxR family RAM_03925 PF04545 Sigma-70, region 4 RAM_03930 PF16751 RAM_03930 RAM_03935 PF17252 RAM_03935 RAM_03940 PF00478 IMP dehydrogenase / GMP reductase domain RAM_03940 PF00571 CBS domain RAM_03950 PF00478 IMP dehydrogenase / GMP reductase domain RAM_03955 PF04149 RAM_03955 RAM_03960 PF00732 GMC oxidoreductase RAM_03960 PF05199 GMC oxidoreductase RAM_03965 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_03970 PF01565 FAD binding domain RAM_03970 PF08031 Berberine and berberine like RAM_03975 PF00171 Aldehyde dehydrogenase family RAM_03980 PF00107 Zinc-binding dehydrogenase RAM_03980 PF08240 Alcohol dehydrogenase GroES-like domain RAM_03985 PF01694 Rhomboid family RAM_03990 PF12867 DinB superfamily RAM_03995 PF00117 Glutamine amidotransferase class-I RAM_03995 PF00958 GMP synthase C terminal domain RAM_03995 PF02540 NAD synthase RAM_04005 PF04024 RAM_04005 RAM_04005 PF09922 Cell wall-active antibiotics response protein (DUF2154) RAM_04010 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_04020 PF04024 RAM_04020 RAM_04020 PF13581 Histidine kinase-like ATPase domain RAM_04025 PF00072 Response regulator receiver domain RAM_04025 PF00196 Bacterial regulatory proteins, luxR family RAM_04030 PF00892 EamA-like transporter family RAM_04035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_04035 PF03466 LysR substrate binding domain RAM_04040 PF00069 Protein kinase domain RAM_04045 PF00069 Protein kinase domain RAM_04065 PF01817 Chorismate mutase type II RAM_04070 PF08044 RAM_04070 RAM_04075 PF00580 UvrD/REP helicase N-terminal domain RAM_04075 PF13361 UvrD-like helicase C-terminal domain RAM_04085 PF01551 Peptidase family M23 RAM_04095 PF02310 B12 binding domain RAM_04100 PF00549 CoA-ligase RAM_04100 PF08442 ATP-grasp domain RAM_04105 PF00549 CoA-ligase RAM_04105 PF02629 CoA binding domain RAM_04110 PF17270 RAM_04110 RAM_04120 PF00551 Formyl transferase RAM_04125 PF01808 AICARFT/IMPCHase bienzyme RAM_04125 PF02142 MGS-like domain RAM_04140 PF00583 Acetyltransferase (GNAT) family RAM_04145 PF01966 HD domain RAM_04165 PF02811 PHP domain RAM_04165 PF07733 Bacterial DNA polymerase III alpha subunit RAM_04165 PF14579 Helix-hairpin-helix motif RAM_04170 PF13649 Methyltransferase domain RAM_04175 PF00805 Pentapeptide repeats (8 copies) RAM_04175 PF13599 Pentapeptide repeats (9 copies) RAM_04180 PF14021 RAM_04180 RAM_04185 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RAM_04185 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RAM_04190 PF11222 RAM_04190 RAM_04195 PF07690 Major Facilitator Superfamily RAM_04200 PF12840 Helix-turn-helix domain RAM_04205 PF07690 Major Facilitator Superfamily RAM_04210 PF08940 Domain of unknown function (DUF1918) RAM_04215 PF00588 SpoU rRNA Methylase family RAM_04220 PF00730 HhH-GPD superfamily base excision DNA repair protein RAM_04225 PF02311 AraC-like ligand binding domain RAM_04225 PF12833 Helix-turn-helix domain RAM_04230 PF09391 Protein of unknown function (DUF2000) RAM_04240 PF08241 Methyltransferase domain RAM_04245 PF09969 RAM_04245 RAM_04255 PF00180 Isocitrate/isopropylmalate dehydrogenase RAM_04270 PF00440 Bacterial regulatory proteins, tetR family RAM_04275 PF12706 Beta-lactamase superfamily domain RAM_04280 PF03372 Endonuclease/Exonuclease/phosphatase family RAM_04290 PF00579 tRNA synthetases class I (W and Y) RAM_04295 PF13671 AAA domain RAM_04300 PF03631 RAM_04300 RAM_04305 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_04310 PF01638 HxlR-like helix-turn-helix RAM_04315 PF00768 D-alanyl-D-alanine carboxypeptidase RAM_04325 PF00082 Subtilase family RAM_04335 PF13085 2Fe-2S iron-sulfur cluster binding domain RAM_04335 PF13183 4Fe-4S dicluster domain RAM_04340 PF00890 FAD binding domain RAM_04340 PF02910 Fumarate reductase flavoprotein C-term RAM_04345 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RAM_04350 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RAM_04355 PF08305 NPCBM/NEW2 domain RAM_04355 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase RAM_04355 PF16499 RAM_04355 RAM_04360 PF10566 Glycoside hydrolase 97 RAM_04360 PF14508 Glycosyl-hydrolase 97 N-terminal RAM_04360 PF14509 Glycosyl-hydrolase 97 C-terminal, oligomerisation RAM_04365 PF02608 Basic membrane protein RAM_04370 PF00005 ABC transporter RAM_04375 PF02653 RAM_04375 RAM_04380 PF02653 RAM_04380 RAM_04385 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_04390 PF00591 Glycosyl transferase family, a/b domain RAM_04390 PF02885 Glycosyl transferase family, helical bundle domain RAM_04390 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RAM_04400 PF00962 Adenosine/AMP deaminase RAM_04405 PF07690 Major Facilitator Superfamily RAM_04415 PF00270 DEAD/DEAH box helicase RAM_04415 PF00271 Helicase conserved C-terminal domain RAM_04415 PF12029 RAM_04415 RAM_04425 PF03807 NADP oxidoreductase coenzyme F420-dependent RAM_04430 PF01638 HxlR-like helix-turn-helix RAM_04435 PF04198 Putative sugar-binding domain RAM_04440 PF00107 Zinc-binding dehydrogenase RAM_04440 PF08240 Alcohol dehydrogenase GroES-like domain RAM_04445 PF01547 Bacterial extracellular solute-binding protein RAM_04450 PF00528 Binding-protein-dependent transport system inner membrane component RAM_04455 PF00528 Binding-protein-dependent transport system inner membrane component RAM_04460 PF06902 Divergent 4Fe-4S mono-cluster RAM_04465 PF00067 Cytochrome P450 RAM_04470 PF00067 Cytochrome P450 RAM_04475 PF00440 Bacterial regulatory proteins, tetR family RAM_04485 PF01670 Glycosyl hydrolase family 12 RAM_04490 PF00171 Aldehyde dehydrogenase family RAM_04495 PF00171 Aldehyde dehydrogenase family RAM_04500 PF01791 DeoC/LacD family aldolase RAM_04505 PF08044 RAM_04505 RAM_04505 PF09922 Cell wall-active antibiotics response protein (DUF2154) RAM_04510 PF00102 Protein-tyrosine phosphatase RAM_04515 PF14681 Uracil phosphoribosyltransferase RAM_04520 PF00805 Pentapeptide repeats (8 copies) RAM_04525 PF04542 Sigma-70 region 2 RAM_04525 PF08281 Sigma-70, region 4 RAM_04535 PF00440 Bacterial regulatory proteins, tetR family RAM_04535 PF13305 WHG domain RAM_04540 PF13411 MerR HTH family regulatory protein RAM_04545 PF00248 Aldo/keto reductase family RAM_04550 PF13738 Pyridine nucleotide-disulphide oxidoreductase RAM_04555 PF01070 FMN-dependent dehydrogenase RAM_04565 PF00999 Sodium/hydrogen exchanger family RAM_04570 PF00072 Response regulator receiver domain RAM_04570 PF00486 Transcriptional regulatory protein, C terminal RAM_04575 PF00512 His Kinase A (phospho-acceptor) domain RAM_04575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_04585 PF03129 Anticodon binding domain RAM_04585 PF13393 Histidyl-tRNA synthetase RAM_04595 PF01979 Amidohydrolase family RAM_04615 PF03358 NADPH-dependent FMN reductase RAM_04620 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RAM_04620 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RAM_04620 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RAM_04620 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RAM_04625 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_04630 PF01048 Phosphorylase superfamily RAM_04635 PF14108 RAM_04635 RAM_04645 PF13411 MerR HTH family regulatory protein RAM_04650 PF00069 Protein kinase domain RAM_04655 PF01642 Methylmalonyl-CoA mutase RAM_04660 PF01642 Methylmalonyl-CoA mutase RAM_04660 PF02310 B12 binding domain RAM_04665 PF03308 ArgK protein RAM_04675 PF01546 Peptidase family M20/M25/M40 RAM_04685 PF13772 AIG2-like family RAM_04690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_04690 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_04705 PF04203 Sortase family RAM_04710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_04715 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_04715 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_04720 PF00230 Major intrinsic protein RAM_04725 PF01266 FAD dependent oxidoreductase RAM_04725 PF16901 RAM_04725 RAM_04730 PF00440 Bacterial regulatory proteins, tetR family RAM_04735 PF01370 NAD dependent epimerase/dehydratase family RAM_04740 PF13302 Acetyltransferase (GNAT) domain RAM_04750 PF08044 RAM_04750 RAM_04755 PF08044 RAM_04755 RAM_04760 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain RAM_04760 PF00364 Biotin-requiring enzyme RAM_04760 PF02785 Biotin carboxylase C-terminal domain RAM_04760 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_04775 PF00375 Sodium:dicarboxylate symporter family RAM_04780 PF02545 Maf-like protein RAM_04785 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_04785 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_04790 PF07690 Major Facilitator Superfamily RAM_04795 PF03551 Transcriptional regulator PadR-like family RAM_04800 PF05731 TROVE domain RAM_04805 PF00296 Luciferase-like monooxygenase RAM_04810 PF12802 MarR family RAM_04815 PF13822 RAM_04815 RAM_04820 PF01039 Carboxyl transferase domain RAM_04825 PF13673 Acetyltransferase (GNAT) domain RAM_04830 PF00072 Response regulator receiver domain RAM_04830 PF00196 Bacterial regulatory proteins, luxR family RAM_04835 PF07730 Histidine kinase RAM_04840 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_04845 PF12802 MarR family RAM_04850 PF03358 NADPH-dependent FMN reductase RAM_04855 PF00440 Bacterial regulatory proteins, tetR family RAM_04860 PF01494 FAD binding domain RAM_04865 PF01638 HxlR-like helix-turn-helix RAM_04870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_04875 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_04880 PF01965 DJ-1/PfpI family RAM_04880 PF12833 Helix-turn-helix domain RAM_04885 PF01841 Transglutaminase-like superfamily RAM_04890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_04890 PF03466 LysR substrate binding domain RAM_04895 PF12680 SnoaL-like domain RAM_04900 PF00440 Bacterial regulatory proteins, tetR family RAM_04905 PF08241 Methyltransferase domain RAM_04910 PF01872 RibD C-terminal domain RAM_04915 PF04542 Sigma-70 region 2 RAM_04920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RAM_04940 PF07730 Histidine kinase RAM_04945 PF00072 Response regulator receiver domain RAM_04945 PF00196 Bacterial regulatory proteins, luxR family RAM_04950 PF00877 NlpC/P60 family RAM_04955 PF02237 Biotin protein ligase C terminal domain RAM_04955 PF03099 Biotin/lipoate A/B protein ligase family RAM_04960 PF03703 RAM_04960 RAM_04965 PF00682 HMGL-like RAM_04970 PF14021 RAM_04970 RAM_04980 PF07971 Glycosyl hydrolase family 92 RAM_04985 PF00459 Inositol monophosphatase family RAM_04990 PF00072 Response regulator receiver domain RAM_04990 PF00486 Transcriptional regulatory protein, C terminal RAM_04995 PF00672 HAMP domain RAM_04995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_05000 PF00196 Bacterial regulatory proteins, luxR family RAM_05005 PF00072 Response regulator receiver domain RAM_05005 PF00196 Bacterial regulatory proteins, luxR family RAM_05010 PF13460 NADH(P)-binding RAM_05015 PF07690 Major Facilitator Superfamily RAM_05020 PF04138 RAM_05020 RAM_05025 PF04138 RAM_05025 RAM_05030 PF04542 Sigma-70 region 2 RAM_05030 PF13490 Putative zinc-finger RAM_05040 PF09594 RAM_05040 RAM_05045 PF09594 RAM_05045 RAM_05050 PF02222 ATP-grasp domain RAM_05055 PF00731 AIR carboxylase RAM_05070 PF00501 AMP-binding enzyme RAM_05070 PF13193 AMP-binding enzyme C-terminal domain RAM_05075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_05075 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_05075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_05085 PF01674 Lipase (class 2) RAM_05095 PF06724 RAM_05095 RAM_05100 PF07681 RAM_05100 RAM_05110 PF13460 NADH(P)-binding RAM_05115 PF03816 Cell envelope-related transcriptional attenuator domain RAM_05120 PF03816 Cell envelope-related transcriptional attenuator domain RAM_05120 PF13399 LytR cell envelope-related transcriptional attenuator RAM_05125 PF16363 RAM_05125 RAM_05130 PF04321 RmlD substrate binding domain RAM_05135 PF13439 Glycosyltransferase Family 4 RAM_05135 PF13692 Glycosyl transferases group 1 RAM_05140 PF00534 Glycosyl transferases group 1 RAM_05140 PF13641 Glycosyltransferase like family 2 RAM_05145 PF00535 Glycosyl transferase family 2 RAM_05150 PF00534 Glycosyl transferases group 1 RAM_05150 PF13439 Glycosyltransferase Family 4 RAM_05155 PF00534 Glycosyl transferases group 1 RAM_05155 PF13439 Glycosyltransferase Family 4 RAM_05160 PF00535 Glycosyl transferase family 2 RAM_05170 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_05170 PF00483 Nucleotidyl transferase RAM_05185 PF00392 Bacterial regulatory proteins, gntR family RAM_05195 PF00293 NUDIX domain RAM_05200 PF00881 Nitroreductase family RAM_05200 PF01996 F420-0:Gamma-glutamyl ligase RAM_05205 PF01933 Uncharacterised protein family UPF0052 RAM_05210 PF00583 Acetyltransferase (GNAT) family RAM_05220 PF00037 4Fe-4S binding domain RAM_05225 PF00155 Aminotransferase class I and II RAM_05230 PF00440 Bacterial regulatory proteins, tetR family RAM_05235 PF01494 FAD binding domain RAM_05240 PF05235 CHAD domain RAM_05245 PF14602 Hexapeptide repeat of succinyl-transferase RAM_05245 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle RAM_05255 PF01546 Peptidase family M20/M25/M40 RAM_05255 PF07687 Peptidase dimerisation domain RAM_05260 PF11350 RAM_05260 RAM_05265 PF00704 Glycosyl hydrolases family 18 RAM_05270 PF01483 Proprotein convertase P-domain RAM_05270 PF04389 Peptidase family M28 RAM_05275 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_05275 PF01483 Proprotein convertase P-domain RAM_05275 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_05275 PF03413 Peptidase propeptide and YPEB domain RAM_05280 PF13560 Helix-turn-helix domain RAM_05285 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_05285 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_05285 PF03413 Peptidase propeptide and YPEB domain RAM_05285 PF07504 Fungalysin/Thermolysin Propeptide Motif RAM_05290 PF13424 Tetratricopeptide repeat RAM_05290 PF13560 Helix-turn-helix domain RAM_05295 PF03641 Possible lysine decarboxylase RAM_05300 PF03641 Possible lysine decarboxylase RAM_05310 PF00534 Glycosyl transferases group 1 RAM_05315 PF00535 Glycosyl transferase family 2 RAM_05325 PF01757 RAM_05325 RAM_05330 PF13578 Methyltransferase domain RAM_05335 PF01553 Acyltransferase RAM_05340 PF00535 Glycosyl transferase family 2 RAM_05345 PF00005 ABC transporter RAM_05350 PF00005 ABC transporter RAM_05350 PF00664 ABC transporter transmembrane region RAM_05355 PF02322 RAM_05355 RAM_05360 PF01654 RAM_05360 RAM_05365 PF03551 Transcriptional regulator PadR-like family RAM_05380 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_05385 PF03352 Methyladenine glycosylase RAM_05390 PF00378 Enoyl-CoA hydratase/isomerase family RAM_05395 PF11314 RAM_05395 RAM_05400 PF00883 Cytosol aminopeptidase family, catalytic domain RAM_05405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_05405 PF03466 LysR substrate binding domain RAM_05410 PF07690 Major Facilitator Superfamily RAM_05415 PF01609 Transposase DDE domain RAM_05415 PF13808 RAM_05415 RAM_05420 PF01596 O-methyltransferase RAM_05425 PF04542 Sigma-70 region 2 RAM_05425 PF08281 Sigma-70, region 4 RAM_05435 PF13180 PDZ domain RAM_05435 PF13365 Trypsin-like peptidase domain RAM_05440 PF02416 mttA/Hcf106 family RAM_05445 PF01883 Domain of unknown function DUF59 RAM_05445 PF10609 ParA/MinD ATPase like RAM_05450 PF06210 RAM_05450 RAM_05455 PF00571 CBS domain RAM_05455 PF03448 MgtE intracellular N domain RAM_05455 PF05239 PRC-barrel domain RAM_05460 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase RAM_05465 PF01145 SPFH domain / Band 7 family RAM_05470 PF13828 RAM_05470 RAM_05475 PF13828 RAM_05475 RAM_05480 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_05480 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_05480 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_05490 PF01547 Bacterial extracellular solute-binding protein RAM_05495 PF00528 Binding-protein-dependent transport system inner membrane component RAM_05500 PF00528 Binding-protein-dependent transport system inner membrane component RAM_05505 PF00005 ABC transporter RAM_05515 PF04024 RAM_05515 RAM_05520 PF00440 Bacterial regulatory proteins, tetR family RAM_05525 PF07690 Major Facilitator Superfamily RAM_05530 PF00072 Response regulator receiver domain RAM_05530 PF00196 Bacterial regulatory proteins, luxR family RAM_05535 PF07730 Histidine kinase RAM_05540 PF02517 CAAX protease self-immunity RAM_05545 PF04542 Sigma-70 region 2 RAM_05545 PF08281 Sigma-70, region 4 RAM_05555 PF02195 ParB-like nuclease domain RAM_05560 PF00149 Calcineurin-like phosphoesterase RAM_05570 PF01544 CorA-like Mg2+ transporter protein RAM_05575 PF01575 MaoC like domain RAM_05580 PF10094 RAM_05580 RAM_05585 PF00293 NUDIX domain RAM_05595 PF03703 RAM_05595 RAM_05600 PF02811 PHP domain RAM_05605 PF01914 RAM_05605 RAM_05610 PF00754 F5/8 type C domain RAM_05610 PF17389 RAM_05610 RAM_05610 PF17390 RAM_05610 RAM_05615 PF12705 PD-(D/E)XK nuclease superfamily RAM_05630 PF00270 DEAD/DEAH box helicase RAM_05630 PF00271 Helicase conserved C-terminal domain RAM_05635 PF13794 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE)-like RAM_05640 PF11305 RAM_05640 RAM_05650 PF16170 RAM_05650 RAM_05655 PF00440 Bacterial regulatory proteins, tetR family RAM_05660 PF11583 P-aminobenzoate N-oxygenase AurF RAM_05665 PF12146 Putative lysophospholipase RAM_05670 PF00440 Bacterial regulatory proteins, tetR family RAM_05675 PF12697 Alpha/beta hydrolase family RAM_05680 PF11350 RAM_05680 RAM_05685 PF00581 Rhodanese-like domain RAM_05685 PF00899 ThiF family RAM_05695 PF00384 Molybdopterin oxidoreductase RAM_05695 PF01568 Molydopterin dinucleotide binding domain RAM_05700 PF04324 BFD-like [2Fe-2S] binding domain RAM_05700 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_05705 PF07690 Major Facilitator Superfamily RAM_05710 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RAM_05710 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RAM_05710 PF04324 BFD-like [2Fe-2S] binding domain RAM_05710 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_05715 PF13806 Rieske-like [2Fe-2S] domain RAM_05720 PF00486 Transcriptional regulatory protein, C terminal RAM_05720 PF02602 Uroporphyrinogen-III synthase HemD RAM_05725 PF13349 RAM_05725 RAM_05730 PF06224 RAM_05730 RAM_05735 PF11528 Protein of unknown function (DUF3224) RAM_05740 PF08279 HTH domain RAM_05740 PF13280 RAM_05740 RAM_05745 PF02602 Uroporphyrinogen-III synthase HemD RAM_05750 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_05755 PF00580 UvrD/REP helicase N-terminal domain RAM_05755 PF12705 PD-(D/E)XK nuclease superfamily RAM_05755 PF13361 UvrD-like helicase C-terminal domain RAM_05760 PF00580 UvrD/REP helicase N-terminal domain RAM_05760 PF12705 PD-(D/E)XK nuclease superfamily RAM_05760 PF13361 UvrD-like helicase C-terminal domain RAM_05770 PF02254 TrkA-N domain RAM_05770 PF07885 Ion channel RAM_05780 PF04228 RAM_05780 RAM_05790 PF13559 RAM_05790 RAM_05795 PF14258 RAM_05795 RAM_05800 PF07726 ATPase family associated with various cellular activities (AAA) RAM_05805 PF01345 RAM_05805 RAM_05805 PF01882 RAM_05805 RAM_05810 PF01944 RAM_05810 RAM_05815 PF06271 RAM_05815 RAM_05820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_05825 PF04228 RAM_05825 RAM_05830 PF09972 RAM_05830 RAM_05835 PF09972 RAM_05835 RAM_05840 PF00675 Insulinase (Peptidase family M16) RAM_05840 PF05193 Peptidase M16 inactive domain RAM_05845 PF00675 Insulinase (Peptidase family M16) RAM_05845 PF05193 Peptidase M16 inactive domain RAM_05850 PF00293 NUDIX domain RAM_05850 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain RAM_05850 PF09297 NADH pyrophosphatase zinc ribbon domain RAM_05855 PF00480 ROK family RAM_05860 PF13416 Bacterial extracellular solute-binding protein RAM_05865 PF00528 Binding-protein-dependent transport system inner membrane component RAM_05870 PF00528 Binding-protein-dependent transport system inner membrane component RAM_05875 PF02056 Family 4 glycosyl hydrolase RAM_05875 PF11975 Family 4 glycosyl hydrolase C-terminal domain RAM_05880 PF01869 BadF/BadG/BcrA/BcrD ATPase family RAM_05885 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_05890 PF12840 Helix-turn-helix domain RAM_05895 PF10708 RAM_05895 RAM_05900 PF02447 RAM_05900 RAM_05905 PF01202 Shikimate kinase RAM_05910 PF00392 Bacterial regulatory proteins, gntR family RAM_05910 PF07729 FCD domain RAM_05915 PF03186 RAM_05915 RAM_05925 PF04299 Putative FMN-binding domain RAM_05930 PF02104 RAM_05930 RAM_05935 PF01451 Low molecular weight phosphotyrosine protein phosphatase RAM_05945 PF01817 Chorismate mutase type II RAM_05950 PF01784 NIF3 (NGG1p interacting factor 3) RAM_05955 PF02591 Putative zinc ribbon domain RAM_05960 PF00300 Histidine phosphatase superfamily (branch 1) RAM_05960 PF13456 Reverse transcriptase-like RAM_05970 PF02040 RAM_05970 RAM_05975 PF00196 Bacterial regulatory proteins, luxR family RAM_05975 PF13191 AAA ATPase domain RAM_05985 PF04542 Sigma-70 region 2 RAM_05985 PF08281 Sigma-70, region 4 RAM_05990 PF13628 RAM_05990 RAM_05995 PF13370 4Fe-4S single cluster domain RAM_06000 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_06000 PF14759 Reductase C-terminal RAM_06020 PF12846 AAA-like domain RAM_06035 PF00877 NlpC/P60 family RAM_06050 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_06055 PF00773 RNB domain RAM_06065 PF00171 Aldehyde dehydrogenase family RAM_06070 PF00202 Aminotransferase class-III RAM_06075 PF07905 RAM_06075 RAM_06075 PF13556 PucR C-terminal helix-turn-helix domain RAM_06090 PF00392 Bacterial regulatory proteins, gntR family RAM_06090 PF07729 FCD domain RAM_06095 PF00171 Aldehyde dehydrogenase family RAM_06100 PF00005 ABC transporter RAM_06100 PF08402 TOBE domain RAM_06105 PF13416 Bacterial extracellular solute-binding protein RAM_06110 PF00528 Binding-protein-dependent transport system inner membrane component RAM_06115 PF00528 Binding-protein-dependent transport system inner membrane component RAM_06120 PF00561 alpha/beta hydrolase fold RAM_06125 PF02673 RAM_06125 RAM_06130 PF09678 RAM_06130 RAM_06135 PF02548 Ketopantoate hydroxymethyltransferase RAM_06140 PF00152 tRNA synthetases class II (D, K and N) RAM_06140 PF01336 OB-fold nucleic acid binding domain RAM_06140 PF09924 Uncharacterized conserved protein (DUF2156) RAM_06140 PF16995 RAM_06140 RAM_06150 PF04978 Protein of unknown function (DUF664) RAM_06155 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_06160 PF13468 Glyoxalase-like domain RAM_06165 PF00795 Carbon-nitrogen hydrolase RAM_06165 PF02540 NAD synthase RAM_06170 PF01043 SecA preprotein cross-linking domain RAM_06170 PF07516 SecA Wing and Scaffold domain RAM_06170 PF07517 SecA DEAD-like domain RAM_06175 PF00561 alpha/beta hydrolase fold RAM_06180 PF07161 Protein of unknown function (DUF1396) RAM_06185 PF07690 Major Facilitator Superfamily RAM_06190 PF00120 Glutamine synthetase, catalytic domain RAM_06190 PF03951 Glutamine synthetase, beta-Grasp domain RAM_06195 PF01425 Amidase RAM_06200 PF01037 AsnC family RAM_06200 PF13404 AsnC-type helix-turn-helix domain RAM_06205 PF00581 Rhodanese-like domain RAM_06210 PF00117 Glutamine amidotransferase class-I RAM_06215 PF01384 RAM_06215 RAM_06220 PF01384 RAM_06220 RAM_06225 PF03710 Glutamate-ammonia ligase adenylyltransferase RAM_06225 PF08335 GlnD PII-uridylyltransferase RAM_06230 PF13279 Thioesterase-like superfamily RAM_06235 PF00120 Glutamine synthetase, catalytic domain RAM_06235 PF03951 Glutamine synthetase, beta-Grasp domain RAM_06240 PF06271 RAM_06240 RAM_06250 PF13829 RAM_06250 RAM_06255 PF00570 HRDC domain RAM_06255 PF00580 UvrD/REP helicase N-terminal domain RAM_06255 PF13361 UvrD-like helicase C-terminal domain RAM_06265 PF02467 RAM_06265 RAM_06280 PF08241 Methyltransferase domain RAM_06295 PF03109 RAM_06295 RAM_06300 PF00899 ThiF family RAM_06305 PF01863 Protein of unknown function DUF45 RAM_06310 PF10103 Uncharacterised conserved protein (DUF2342) RAM_06315 PF05362 Lon protease (S16) C-terminal proteolytic domain RAM_06315 PF13180 PDZ domain RAM_06325 PF03699 RAM_06325 RAM_06330 PF01494 FAD binding domain RAM_06335 PF00440 Bacterial regulatory proteins, tetR family RAM_06335 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_06340 PF03551 Transcriptional regulator PadR-like family RAM_06345 PF00472 RF-1 domain RAM_06345 PF03462 PCRF domain RAM_06350 PF00005 ABC transporter RAM_06360 PF01668 SmpB protein RAM_06365 PF04909 Amidohydrolase RAM_06370 PF01757 RAM_06370 RAM_06380 PF03928 Domain of unknown function (DUF336) RAM_06385 PF00072 Response regulator receiver domain RAM_06385 PF00196 Bacterial regulatory proteins, luxR family RAM_06390 PF07730 Histidine kinase RAM_06390 PF13796 RAM_06390 RAM_06395 PF13796 RAM_06395 RAM_06405 PF00990 GGDEF domain RAM_06415 PF01614 Bacterial transcriptional regulator RAM_06415 PF09339 IclR helix-turn-helix domain RAM_06420 PF00221 Aromatic amino acid lyase RAM_06425 PF01175 Urocanase RAM_06425 PF17391 RAM_06425 RAM_06425 PF17392 RAM_06425 RAM_06430 PF01546 Peptidase family M20/M25/M40 RAM_06435 PF01979 Amidohydrolase family RAM_06440 PF01979 Amidohydrolase family RAM_06445 PF01494 FAD binding domain RAM_06450 PF01674 Lipase (class 2) RAM_06460 PF01384 RAM_06460 RAM_06480 PF07730 Histidine kinase RAM_06485 PF00072 Response regulator receiver domain RAM_06485 PF00196 Bacterial regulatory proteins, luxR family RAM_06490 PF01494 FAD binding domain RAM_06495 PF00440 Bacterial regulatory proteins, tetR family RAM_06500 PF00931 NB-ARC domain RAM_06500 PF13424 Tetratricopeptide repeat RAM_06510 PF00005 ABC transporter RAM_06515 PF00271 Helicase conserved C-terminal domain RAM_06515 PF04408 Helicase associated domain (HA2) RAM_06515 PF08482 RAM_06515 RAM_06520 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_06525 PF07291 RAM_06525 RAM_06530 PF13462 Thioredoxin RAM_06540 PF00877 NlpC/P60 family RAM_06550 PF02575 YbaB/EbfC DNA-binding family RAM_06555 PF01494 FAD binding domain RAM_06560 PF12833 Helix-turn-helix domain RAM_06565 PF04978 Protein of unknown function (DUF664) RAM_06570 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_06570 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_06575 PF00652 Ricin-type beta-trefoil lectin domain RAM_06575 PF06283 Trehalose utilisation RAM_06580 PF00521 DNA gyrase/topoisomerase IV, subunit A RAM_06580 PF03989 DNA gyrase C-terminal domain, beta-propeller RAM_06585 PF00204 DNA gyrase B RAM_06585 PF00986 DNA gyrase B subunit, carboxyl terminus RAM_06585 PF01751 Toprim domain RAM_06585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_06595 PF00296 Luciferase-like monooxygenase RAM_06600 PF03358 NADPH-dependent FMN reductase RAM_06605 PF01872 RibD C-terminal domain RAM_06610 PF00144 Beta-lactamase RAM_06615 PF09656 RAM_06615 RAM_06620 PF00440 Bacterial regulatory proteins, tetR family RAM_06625 PF00703 Glycosyl hydrolases family 2 RAM_06625 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_06625 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_06625 PF13385 Concanavalin A-like lectin/glucanases superfamily RAM_06630 PF02653 RAM_06630 RAM_06635 PF02653 RAM_06635 RAM_06640 PF00005 ABC transporter RAM_06645 PF13407 Periplasmic binding protein domain RAM_06650 PF00356 Bacterial regulatory proteins, lacI family RAM_06650 PF13377 Periplasmic binding protein-like domain RAM_06655 PF13175 AAA ATPase domain RAM_06655 PF13304 AAA domain RAM_06660 PF01638 HxlR-like helix-turn-helix RAM_06665 PF00106 short chain dehydrogenase RAM_06670 PF00440 Bacterial regulatory proteins, tetR family RAM_06670 PF13305 WHG domain RAM_06675 PF01636 Phosphotransferase enzyme family RAM_06680 PF04954 Siderophore-interacting protein RAM_06680 PF08021 Siderophore-interacting FAD-binding domain RAM_06685 PF00005 ABC transporter RAM_06690 PF00440 Bacterial regulatory proteins, tetR family RAM_06690 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_06695 PF08241 Methyltransferase domain RAM_06705 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase RAM_06705 PF04020 RAM_06705 RAM_06710 PF09335 RAM_06710 RAM_06715 PF12706 Beta-lactamase superfamily domain RAM_06725 PF14542 GCN5-related N-acetyl-transferase RAM_06730 PF02983 Alpha-lytic protease prodomain RAM_06735 PF13649 Methyltransferase domain RAM_06740 PF00652 Ricin-type beta-trefoil lectin domain RAM_06740 PF00754 F5/8 type C domain RAM_06745 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_06750 PF00067 Cytochrome P450 RAM_06755 PF00152 tRNA synthetases class II (D, K and N) RAM_06755 PF01336 OB-fold nucleic acid binding domain RAM_06765 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_06770 PF07336 Protein of unknown function (DUF1470) RAM_06770 PF11706 CGNR zinc finger RAM_06775 PF00561 alpha/beta hydrolase fold RAM_06780 PF00041 Fibronectin type III domain RAM_06780 PF00754 F5/8 type C domain RAM_06780 PF07995 Glucose / Sorbosone dehydrogenase RAM_06790 PF01906 Putative heavy-metal-binding RAM_06795 PF01906 Putative heavy-metal-binding RAM_06800 PF00294 pfkB family carbohydrate kinase RAM_06805 PF02056 Family 4 glycosyl hydrolase RAM_06805 PF11975 Family 4 glycosyl hydrolase C-terminal domain RAM_06810 PF00106 short chain dehydrogenase RAM_06815 PF00890 FAD binding domain RAM_06820 PF00296 Luciferase-like monooxygenase RAM_06825 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_06825 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RAM_06830 PF00440 Bacterial regulatory proteins, tetR family RAM_06830 PF13977 Bacterial transcriptional repressor RAM_06835 PF06441 Epoxide hydrolase N terminus RAM_06835 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_06840 PF00440 Bacterial regulatory proteins, tetR family RAM_06845 PF01345 RAM_06845 RAM_06850 PF13365 Trypsin-like peptidase domain RAM_06855 PF00196 Bacterial regulatory proteins, luxR family RAM_06865 PF01694 Rhomboid family RAM_06870 PF00809 Pterin binding enzyme RAM_06880 PF00005 ABC transporter RAM_06885 PF12730 RAM_06885 RAM_06890 PF07819 PGAP1-like protein RAM_06895 PF12770 RAM_06895 RAM_06900 PF00082 Subtilase family RAM_06910 PF04542 Sigma-70 region 2 RAM_06920 PF16483 RAM_06920 RAM_06925 PF00892 EamA-like transporter family RAM_06930 PF12802 MarR family RAM_06935 PF00753 Metallo-beta-lactamase superfamily RAM_06940 PF03830 PTS system sorbose subfamily IIB component RAM_06945 PF03609 RAM_06945 RAM_06945 PF03613 RAM_06945 RAM_06950 PF03610 PTS system fructose IIA component RAM_06960 PF00392 Bacterial regulatory proteins, gntR family RAM_06960 PF07702 UTRA domain RAM_06965 PF00486 Transcriptional regulatory protein, C terminal RAM_06965 PF00931 NB-ARC domain RAM_06965 PF03704 Bacterial transcriptional activator domain RAM_06965 PF13424 Tetratricopeptide repeat RAM_06970 PF00975 Thioesterase domain RAM_06975 PF05977 Transmembrane secretion effector RAM_06980 PF09084 NMT1/THI5 like RAM_06985 PF00005 ABC transporter RAM_06985 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_06990 PF00005 ABC transporter RAM_06995 PF02653 RAM_06995 RAM_07000 PF02653 RAM_07000 RAM_07005 PF13458 Periplasmic binding protein RAM_07010 PF00440 Bacterial regulatory proteins, tetR family RAM_07015 PF05729 NACHT domain RAM_07030 PF00072 Response regulator receiver domain RAM_07030 PF00196 Bacterial regulatory proteins, luxR family RAM_07035 PF07730 Histidine kinase RAM_07035 PF13796 RAM_07035 RAM_07040 PF00005 ABC transporter RAM_07045 PF02687 RAM_07045 RAM_07050 PF00457 Glycosyl hydrolases family 11 RAM_07055 PF01522 Polysaccharide deacetylase RAM_07060 PF00005 ABC transporter RAM_07065 PF12730 RAM_07065 RAM_07070 PF04185 Phosphoesterase family RAM_07075 PF13302 Acetyltransferase (GNAT) domain RAM_07090 PF02627 Carboxymuconolactone decarboxylase family RAM_07095 PF07690 Major Facilitator Superfamily RAM_07100 PF00171 Aldehyde dehydrogenase family RAM_07105 PF00440 Bacterial regulatory proteins, tetR family RAM_07110 PF00723 Glycosyl hydrolases family 15 RAM_07115 PF08240 Alcohol dehydrogenase GroES-like domain RAM_07115 PF16912 RAM_07115 RAM_07120 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_07125 PF03067 Chitin binding domain RAM_07135 PF00296 Luciferase-like monooxygenase RAM_07140 PF01904 Protein of unknown function DUF72 RAM_07145 PF05050 Methyltransferase FkbM domain RAM_07150 PF03734 L,D-transpeptidase catalytic domain RAM_07155 PF13302 Acetyltransferase (GNAT) domain RAM_07160 PF05977 Transmembrane secretion effector RAM_07165 PF01433 Peptidase family M1 RAM_07170 PF12721 RAM_07170 RAM_07180 PF12802 MarR family RAM_07190 PF05593 RAM_07190 RAM_07190 PF14410 RAM_07190 RAM_07195 PF10824 Protein of unknown function (DUF2580) RAM_07200 PF02575 YbaB/EbfC DNA-binding family RAM_07205 PF12867 DinB superfamily RAM_07220 PF02426 Muconolactone delta-isomerase RAM_07225 PF08240 Alcohol dehydrogenase GroES-like domain RAM_07225 PF13602 Zinc-binding dehydrogenase RAM_07230 PF00440 Bacterial regulatory proteins, tetR family RAM_07235 PF08240 Alcohol dehydrogenase GroES-like domain RAM_07235 PF13602 Zinc-binding dehydrogenase RAM_07240 PF13560 Helix-turn-helix domain RAM_07250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_07255 PF03259 Roadblock/LC7 domain RAM_07260 PF05331 RAM_07260 RAM_07265 PF03029 Conserved hypothetical ATP binding protein RAM_07280 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_07285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_07285 PF03466 LysR substrate binding domain RAM_07290 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_07295 PF00440 Bacterial regulatory proteins, tetR family RAM_07300 PF01494 FAD binding domain RAM_07305 PF00440 Bacterial regulatory proteins, tetR family RAM_07305 PF16859 RAM_07305 RAM_07310 PF01527 Transposase RAM_07315 PF00665 Integrase core domain RAM_07315 PF13276 RAM_07315 RAM_07320 PF14435 RAM_07320 RAM_07330 PF00440 Bacterial regulatory proteins, tetR family RAM_07335 PF00248 Aldo/keto reductase family RAM_07340 PF15585 RAM_07340 RAM_07345 PF04542 Sigma-70 region 2 RAM_07345 PF08281 Sigma-70, region 4 RAM_07365 PF00665 Integrase core domain RAM_07365 PF13276 RAM_07365 RAM_07370 PF01527 Transposase RAM_07380 PF00931 NB-ARC domain RAM_07380 PF13181 Tetratricopeptide repeat RAM_07380 PF13424 Tetratricopeptide repeat RAM_07385 PF12802 MarR family RAM_07390 PF03055 Retinal pigment epithelial membrane protein RAM_07395 PF12802 MarR family RAM_07400 PF13564 RAM_07400 RAM_07405 PF00107 Zinc-binding dehydrogenase RAM_07405 PF08240 Alcohol dehydrogenase GroES-like domain RAM_07415 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RAM_07420 PF00682 HMGL-like RAM_07425 PF00501 AMP-binding enzyme RAM_07425 PF13193 AMP-binding enzyme C-terminal domain RAM_07430 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_07430 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_07435 PF07730 Histidine kinase RAM_07435 PF13185 GAF domain RAM_07440 PF00072 Response regulator receiver domain RAM_07440 PF00196 Bacterial regulatory proteins, luxR family RAM_07445 PF00589 Phage integrase family RAM_07455 PF00652 Ricin-type beta-trefoil lectin domain RAM_07460 PF03729 RAM_07460 RAM_07465 PF00753 Metallo-beta-lactamase superfamily RAM_07465 PF12706 Beta-lactamase superfamily domain RAM_07470 PF00072 Response regulator receiver domain RAM_07470 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_07475 PF00027 Cyclic nucleotide-binding domain RAM_07475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_07480 PF00135 Carboxylesterase family RAM_07490 PF05816 RAM_07490 RAM_07495 PF00092 von Willebrand factor type A domain RAM_07495 PF13531 Bacterial extracellular solute-binding protein RAM_07520 PF02423 Ornithine cyclodeaminase/mu-crystallin family RAM_07525 PF01548 RAM_07525 RAM_07525 PF02371 RAM_07525 RAM_07530 PF00805 Pentapeptide repeats (8 copies) RAM_07530 PF13599 Pentapeptide repeats (9 copies) RAM_07535 PF00174 Oxidoreductase molybdopterin binding domain RAM_07540 PF00175 Oxidoreductase NAD-binding domain RAM_07540 PF00970 Oxidoreductase FAD-binding domain RAM_07545 PF00041 Fibronectin type III domain RAM_07545 PF13229 Right handed beta helix region RAM_07550 PF00196 Bacterial regulatory proteins, luxR family RAM_07565 PF00350 Dynamin family RAM_07575 PF01042 Endoribonuclease L-PSP RAM_07580 PF01638 HxlR-like helix-turn-helix RAM_07585 PF00501 AMP-binding enzyme RAM_07585 PF13193 AMP-binding enzyme C-terminal domain RAM_07590 PF00440 Bacterial regulatory proteins, tetR family RAM_07595 PF01464 Transglycosylase SLT domain RAM_07600 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_07605 PF01270 Glycosyl hydrolases family 8 RAM_07610 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_07615 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_07620 PF00528 Binding-protein-dependent transport system inner membrane component RAM_07625 PF00005 ABC transporter RAM_07630 PF00266 Aminotransferase class-V RAM_07630 PF08348 RAM_07630 RAM_07630 PF13309 RAM_07630 RAM_07640 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_07645 PF00561 alpha/beta hydrolase fold RAM_07645 PF08386 TAP-like protein RAM_07650 PF00005 ABC transporter RAM_07655 PF01061 RAM_07655 RAM_07665 PF13601 Winged helix DNA-binding domain RAM_07670 PF00817 impB/mucB/samB family RAM_07670 PF11798 IMS family HHH motif RAM_07670 PF11799 impB/mucB/samB family C-terminal domain RAM_07675 PF07470 Glycosyl Hydrolase Family 88 RAM_07680 PF00392 Bacterial regulatory proteins, gntR family RAM_07680 PF07729 FCD domain RAM_07685 PF02653 RAM_07685 RAM_07690 PF00005 ABC transporter RAM_07695 PF13407 Periplasmic binding protein domain RAM_07700 PF09587 Bacterial capsule synthesis protein PGA_cap RAM_07705 PF00348 Polyprenyl synthetase RAM_07710 PF00027 Cyclic nucleotide-binding domain RAM_07715 PF00027 Cyclic nucleotide-binding domain RAM_07720 PF14023 RAM_07720 RAM_07730 PF13407 Periplasmic binding protein domain RAM_07735 PF14342 RAM_07735 RAM_07740 PF07470 Glycosyl Hydrolase Family 88 RAM_07765 PF09423 PhoD-like phosphatase RAM_07765 PF16655 RAM_07765 RAM_07770 PF00295 Glycosyl hydrolases family 28 RAM_07775 PF07470 Glycosyl Hydrolase Family 88 RAM_07780 PF00754 F5/8 type C domain RAM_07780 PF01120 Alpha-L-fucosidase RAM_07785 PF01204 Trehalase RAM_07790 PF00480 ROK family RAM_07795 PF00082 Subtilase family RAM_07795 PF09286 Pro-kumamolisin, activation domain RAM_07800 PF07730 Histidine kinase RAM_07805 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RAM_07810 PF00106 short chain dehydrogenase RAM_07815 PF02547 Queuosine biosynthesis protein RAM_07825 PF13379 NMT1-like family RAM_07830 PF00005 ABC transporter RAM_07835 PF00528 Binding-protein-dependent transport system inner membrane component RAM_07840 PF08570 RAM_07840 RAM_07845 PF08450 SMP-30/Gluconolaconase/LRE-like region RAM_07850 PF00270 DEAD/DEAH box helicase RAM_07850 PF00271 Helicase conserved C-terminal domain RAM_07855 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_07860 PF04075 Domain of unknown function (DUF385) RAM_07865 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_07875 PF00575 S1 RNA binding domain RAM_07875 PF09371 Tex-like protein N-terminal domain RAM_07875 PF12836 Helix-hairpin-helix motif RAM_07875 PF16921 RAM_07875 RAM_07880 PF00704 Glycosyl hydrolases family 18 RAM_07880 PF02018 Carbohydrate binding domain RAM_07885 PF00732 GMC oxidoreductase RAM_07895 PF13738 Pyridine nucleotide-disulphide oxidoreductase RAM_07900 PF06224 RAM_07900 RAM_07905 PF12625 RAM_07905 RAM_07905 PF12833 Helix-turn-helix domain RAM_07910 PF00440 Bacterial regulatory proteins, tetR family RAM_07925 PF00440 Bacterial regulatory proteins, tetR family RAM_07930 PF00501 AMP-binding enzyme RAM_07930 PF14535 AMP-binding enzyme C-terminal domain RAM_07935 PF03061 Thioesterase superfamily RAM_07940 PF00171 Aldehyde dehydrogenase family RAM_07940 PF01575 MaoC like domain RAM_07945 PF05138 Phenylacetic acid catabolic protein RAM_07950 PF06243 Phenylacetic acid degradation B RAM_07955 PF05138 Phenylacetic acid catabolic protein RAM_07960 PF01883 Domain of unknown function DUF59 RAM_07965 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_07965 PF00175 Oxidoreductase NAD-binding domain RAM_07965 PF00970 Oxidoreductase FAD-binding domain RAM_07975 PF13560 Helix-turn-helix domain RAM_07980 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_07980 PF16701 RAM_07980 RAM_07985 PF00582 Universal stress protein family RAM_07995 PF00107 Zinc-binding dehydrogenase RAM_07995 PF08240 Alcohol dehydrogenase GroES-like domain RAM_08000 PF03779 RAM_08000 RAM_08005 PF00440 Bacterial regulatory proteins, tetR family RAM_08010 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_08015 PF00108 Thiolase, N-terminal domain RAM_08015 PF02803 Thiolase, C-terminal domain RAM_08020 PF03308 ArgK protein RAM_08025 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_08030 PF00155 Aminotransferase class I and II RAM_08030 PF00392 Bacterial regulatory proteins, gntR family RAM_08035 PF02627 Carboxymuconolactone decarboxylase family RAM_08040 PF13714 Phosphoenolpyruvate phosphomutase RAM_08045 PF00474 Sodium:solute symporter family RAM_08050 PF04341 RAM_08050 RAM_08055 PF00474 Sodium:solute symporter family RAM_08065 PF00072 Response regulator receiver domain RAM_08065 PF04397 LytTr DNA-binding domain RAM_08070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_08070 PF06580 RAM_08070 RAM_08080 PF13407 Periplasmic binding protein domain RAM_08085 PF02653 RAM_08085 RAM_08090 PF00005 ABC transporter RAM_08100 PF00356 Bacterial regulatory proteins, lacI family RAM_08100 PF13377 Periplasmic binding protein-like domain RAM_08105 PF07971 Glycosyl hydrolase family 92 RAM_08110 PF07971 Glycosyl hydrolase family 92 RAM_08115 PF12823 RAM_08115 RAM_08120 PF12802 MarR family RAM_08125 PF01910 Domain of unknown function DUF77 RAM_08135 PF00085 Thioredoxin RAM_08135 PF14561 Tetratricopeptide repeat RAM_08140 PF04228 RAM_08140 RAM_08145 PF00343 Carbohydrate phosphorylase RAM_08145 PF11897 RAM_08145 RAM_08170 PF00296 Luciferase-like monooxygenase RAM_08175 PF00581 Rhodanese-like domain RAM_08180 PF05995 Cysteine dioxygenase type I RAM_08190 PF00005 ABC transporter RAM_08195 PF00378 Enoyl-CoA hydratase/isomerase family RAM_08200 PF08241 Methyltransferase domain RAM_08210 PF04248 Domain of unknown function (DUF427) RAM_08215 PF03466 LysR substrate binding domain RAM_08220 PF00704 Glycosyl hydrolases family 18 RAM_08225 PF10067 RAM_08225 RAM_08230 PF00392 Bacterial regulatory proteins, gntR family RAM_08230 PF00440 Bacterial regulatory proteins, tetR family RAM_08230 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_08235 PF13302 Acetyltransferase (GNAT) domain RAM_08240 PF01494 FAD binding domain RAM_08245 PF03551 Transcriptional regulator PadR-like family RAM_08250 PF12802 MarR family RAM_08255 PF07398 RAM_08255 RAM_08255 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_08260 PF00753 Metallo-beta-lactamase superfamily RAM_08265 PF00248 Aldo/keto reductase family RAM_08270 PF01494 FAD binding domain RAM_08275 PF00877 NlpC/P60 family RAM_08280 PF01156 Inosine-uridine preferring nucleoside hydrolase RAM_08285 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_08295 PF08719 Domain of unknown function (DUF1768) RAM_08300 PF00291 Pyridoxal-phosphate dependent enzyme RAM_08300 PF00585 C-terminal regulatory domain of Threonine dehydratase RAM_08305 PF04542 Sigma-70 region 2 RAM_08305 PF08281 Sigma-70, region 4 RAM_08315 PF06114 Domain of unknown function (DUF955) RAM_08315 PF09856 RAM_08315 RAM_08315 PF13560 Helix-turn-helix domain RAM_08320 PF00463 Isocitrate lyase family RAM_08325 PF01274 Malate synthase RAM_08340 PF00440 Bacterial regulatory proteins, tetR family RAM_08345 PF07080 Protein of unknown function (DUF1348) RAM_08365 PF00534 Glycosyl transferases group 1 RAM_08365 PF13439 Glycosyltransferase Family 4 RAM_08370 PF00703 Glycosyl hydrolases family 2 RAM_08370 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_08370 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_08375 PF00255 Glutathione peroxidase RAM_08380 PF03065 Glycosyl hydrolase family 57 RAM_08380 PF09210 Domain of unknown function (DUF1957) RAM_08385 PF08241 Methyltransferase domain RAM_08395 PF02645 Uncharacterised protein, DegV family COG1307 RAM_08400 PF01012 Electron transfer flavoprotein domain RAM_08405 PF00766 Electron transfer flavoprotein FAD-binding domain RAM_08405 PF01012 Electron transfer flavoprotein domain RAM_08410 PF13444 Acetyltransferase (GNAT) domain RAM_08415 PF01553 Acyltransferase RAM_08420 PF00107 Zinc-binding dehydrogenase RAM_08420 PF08240 Alcohol dehydrogenase GroES-like domain RAM_08425 PF00196 Bacterial regulatory proteins, luxR family RAM_08430 PF07690 Major Facilitator Superfamily RAM_08435 PF00266 Aminotransferase class-V RAM_08440 PF03054 tRNA methyl transferase RAM_08445 PF02720 RAM_08445 RAM_08450 PF00583 Acetyltransferase (GNAT) family RAM_08455 PF00583 Acetyltransferase (GNAT) family RAM_08460 PF00753 Metallo-beta-lactamase superfamily RAM_08465 PF03803 RAM_08465 RAM_08465 PF10708 RAM_08465 RAM_08470 PF01717 Cobalamin-independent synthase, Catalytic domain RAM_08480 PF00533 BRCA1 C Terminus (BRCT) domain RAM_08480 PF01653 NAD-dependent DNA ligase adenylation domain RAM_08480 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RAM_08480 PF03120 NAD-dependent DNA ligase OB-fold domain RAM_08480 PF12826 Helix-hairpin-helix motif RAM_08485 PF00583 Acetyltransferase (GNAT) family RAM_08495 PF02686 Glu-tRNAGln amidotransferase C subunit RAM_08500 PF01425 Amidase RAM_08505 PF02637 GatB domain RAM_08505 PF02934 GatB/GatE catalytic domain RAM_08515 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_08515 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_08520 PF14100 RAM_08520 RAM_08530 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_08530 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_08535 PF07995 Glucose / Sorbosone dehydrogenase RAM_08540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_08545 PF07681 RAM_08545 RAM_08550 PF00920 Dehydratase family RAM_08555 PF10756 RAM_08555 RAM_08560 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_08560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_08560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_08565 PF01842 ACT domain RAM_08565 PF10369 Small subunit of acetolactate synthase RAM_08570 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RAM_08570 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain RAM_08575 PF04149 RAM_08575 RAM_08580 PF12680 SnoaL-like domain RAM_08585 PF00023 Ankyrin repeat RAM_08585 PF12796 Ankyrin repeats (3 copies) RAM_08590 PF00296 Luciferase-like monooxygenase RAM_08595 PF00296 Luciferase-like monooxygenase RAM_08600 PF00440 Bacterial regulatory proteins, tetR family RAM_08605 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_08605 PF01842 ACT domain RAM_08605 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_08610 PF00082 Subtilase family RAM_08615 PF00180 Isocitrate/isopropylmalate dehydrogenase RAM_08620 PF00682 HMGL-like RAM_08620 PF08502 LeuA allosteric (dimerisation) domain RAM_08625 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_08625 PF10370 Domain of unknown function (DUF2437) RAM_08630 PF01494 FAD binding domain RAM_08635 PF13419 Haloacid dehalogenase-like hydrolase RAM_08640 PF00216 Bacterial DNA-binding protein RAM_08645 PF00931 NB-ARC domain RAM_08645 PF13424 Tetratricopeptide repeat RAM_08660 PF04672 S-adenosyl methyltransferase RAM_08670 PF05270 Alpha-L-arabinofuranosidase B (ABFB) RAM_08670 PF09206 Alpha-L-arabinofuranosidase B, catalytic RAM_08685 PF00440 Bacterial regulatory proteins, tetR family RAM_08690 PF11774 Lsr2 RAM_08700 PF00216 Bacterial DNA-binding protein RAM_08710 PF00149 Calcineurin-like phosphoesterase RAM_08710 PF12320 Type 5 capsule protein repressor C-terminal domain RAM_08715 PF13476 AAA domain RAM_08715 PF13558 Putative exonuclease SbcCD, C subunit RAM_08725 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_08725 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_08725 PF14310 Fibronectin type III-like domain RAM_08740 PF00753 Metallo-beta-lactamase superfamily RAM_08745 PF01614 Bacterial transcriptional regulator RAM_08745 PF09339 IclR helix-turn-helix domain RAM_08750 PF00330 Aconitase family (aconitate hydratase) RAM_08755 PF00694 Aconitase C-terminal domain RAM_08760 PF00216 Bacterial DNA-binding protein RAM_08765 PF00486 Transcriptional regulatory protein, C terminal RAM_08765 PF03704 Bacterial transcriptional activator domain RAM_08765 PF13374 Tetratricopeptide repeat RAM_08770 PF00293 NUDIX domain RAM_08770 PF00300 Histidine phosphatase superfamily (branch 1) RAM_08775 PF02503 Polyphosphate kinase middle domain RAM_08775 PF13089 Polyphosphate kinase N-terminal domain RAM_08775 PF13090 Polyphosphate kinase C-terminal domain RAM_08780 PF01983 Guanylyl transferase CofC like RAM_08785 PF01553 Acyltransferase RAM_08790 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RAM_08790 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RAM_08795 PF05995 Cysteine dioxygenase type I RAM_08800 PF00710 Asparaginase RAM_08810 PF02424 ApbE family RAM_08815 PF04205 FMN-binding domain RAM_08820 PF00175 Oxidoreductase NAD-binding domain RAM_08820 PF01794 RAM_08820 RAM_08820 PF08022 RAM_08820 RAM_08825 PF00072 Response regulator receiver domain RAM_08825 PF00486 Transcriptional regulatory protein, C terminal RAM_08830 PF00512 His Kinase A (phospho-acceptor) domain RAM_08830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_08835 PF12900 Pyridoxamine 5'-phosphate oxidase RAM_08840 PF00155 Aminotransferase class I and II RAM_08840 PF00392 Bacterial regulatory proteins, gntR family RAM_08845 PF01820 D-ala D-ala ligase N-terminus RAM_08845 PF07478 D-ala D-ala ligase C-terminus RAM_08850 PF12028 RAM_08850 RAM_08855 PF01037 AsnC family RAM_08860 PF00586 AIR synthase related protein, N-terminal domain RAM_08865 PF00583 Acetyltransferase (GNAT) family RAM_08870 PF16499 RAM_08870 RAM_08875 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_08880 PF03167 Uracil DNA glycosylase superfamily RAM_08885 PF12697 Alpha/beta hydrolase family RAM_08890 PF00830 Ribosomal L28 family RAM_08895 PF02734 DAK2 domain RAM_08895 PF13684 Dihydroxyacetone kinase family RAM_08900 PF00270 DEAD/DEAH box helicase RAM_08900 PF00271 Helicase conserved C-terminal domain RAM_08900 PF17191 RAM_08900 RAM_08905 PF13673 Acetyltransferase (GNAT) domain RAM_08910 PF00440 Bacterial regulatory proteins, tetR family RAM_08910 PF16859 RAM_08910 RAM_08915 PF05139 Erythromycin esterase RAM_08920 PF00656 Caspase domain RAM_08925 PF00082 Subtilase family RAM_08930 PF01609 Transposase DDE domain RAM_08940 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain RAM_08940 PF00364 Biotin-requiring enzyme RAM_08940 PF00682 HMGL-like RAM_08940 PF02436 Conserved carboxylase domain RAM_08940 PF02785 Biotin carboxylase C-terminal domain RAM_08940 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_08945 PF00491 Arginase family RAM_08950 PF00392 Bacterial regulatory proteins, gntR family RAM_08960 PF13556 PucR C-terminal helix-turn-helix domain RAM_08985 PF13540 Regulator of chromosome condensation (RCC1) repeat RAM_09005 PF02470 RAM_09005 RAM_09010 PF02470 RAM_09010 RAM_09010 PF11887 RAM_09010 RAM_09015 PF02470 RAM_09015 RAM_09020 PF02470 RAM_09020 RAM_09025 PF02470 RAM_09025 RAM_09030 PF02470 RAM_09030 RAM_09030 PF11887 RAM_09030 RAM_09035 PF02405 RAM_09035 RAM_09040 PF02405 RAM_09040 RAM_09045 PF00296 Luciferase-like monooxygenase RAM_09050 PF01494 FAD binding domain RAM_09060 PF02861 Clp amino terminal domain RAM_09065 PF00400 WD domain, G-beta repeat RAM_09070 PF13245 Part of AAA domain RAM_09070 PF13538 UvrD-like helicase C-terminal domain RAM_09075 PF03602 Conserved hypothetical protein 95 RAM_09080 PF01467 Cytidylyltransferase RAM_09085 PF00545 ribonuclease RAM_09090 PF04542 Sigma-70 region 2 RAM_09090 PF08281 Sigma-70, region 4 RAM_09105 PF02620 RAM_09105 RAM_09110 PF01783 Ribosomal L32p protein family RAM_09115 PF00035 Double-stranded RNA binding motif RAM_09115 PF14622 Ribonuclease-III-like RAM_09120 PF14592 Chondroitinase B RAM_09125 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_09125 PF06827 Zinc finger found in FPG and IleRS RAM_09125 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_09130 PF13560 Helix-turn-helix domain RAM_09145 PF08450 SMP-30/Gluconolaconase/LRE-like region RAM_09150 PF03551 Transcriptional regulator PadR-like family RAM_09160 PF12697 Alpha/beta hydrolase family RAM_09170 PF00120 Glutamine synthetase, catalytic domain RAM_09175 PF07722 Peptidase C26 RAM_09180 PF00171 Aldehyde dehydrogenase family RAM_09185 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_09200 PF02347 Glycine cleavage system P-protein RAM_09205 PF01571 Aminomethyltransferase folate-binding domain RAM_09205 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_09210 PF01597 Glycine cleavage H-protein RAM_09215 PF00464 Serine hydroxymethyltransferase RAM_09220 PF04055 Radical SAM superfamily RAM_09220 PF16881 RAM_09220 RAM_09225 PF03313 RAM_09225 RAM_09225 PF03315 Serine dehydratase beta chain RAM_09235 PF04255 Protein of unknown function (DUF433) RAM_09245 PF00392 Bacterial regulatory proteins, gntR family RAM_09245 PF07729 FCD domain RAM_09250 PF00912 Transglycosylase RAM_09260 PF01596 O-methyltransferase RAM_09265 PF00155 Aminotransferase class I and II RAM_09265 PF00392 Bacterial regulatory proteins, gntR family RAM_09270 PF01494 FAD binding domain RAM_09280 PF00106 short chain dehydrogenase RAM_09280 PF07993 Male sterility protein RAM_09290 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_09290 PF14759 Reductase C-terminal RAM_09295 PF13411 MerR HTH family regulatory protein RAM_09305 PF07690 Major Facilitator Superfamily RAM_09310 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_09315 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_09315 PF13378 Enolase C-terminal domain-like RAM_09320 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_09325 PF13407 Periplasmic binding protein domain RAM_09330 PF00005 ABC transporter RAM_09335 PF02653 RAM_09335 RAM_09340 PF00392 Bacterial regulatory proteins, gntR family RAM_09340 PF07729 FCD domain RAM_09345 PF00248 Aldo/keto reductase family RAM_09350 PF04909 Amidohydrolase RAM_09355 PF04542 Sigma-70 region 2 RAM_09355 PF08281 Sigma-70, region 4 RAM_09360 PF02656 RAM_09360 RAM_09365 PF02656 RAM_09365 RAM_09370 PF04138 RAM_09370 RAM_09380 PF01521 Iron-sulphur cluster biosynthesis RAM_09385 PF02595 Glycerate kinase family RAM_09390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_09390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_09395 PF02065 Melibiase RAM_09395 PF16875 RAM_09395 RAM_09400 PF00480 ROK family RAM_09405 PF13416 Bacterial extracellular solute-binding protein RAM_09410 PF00528 Binding-protein-dependent transport system inner membrane component RAM_09415 PF00528 Binding-protein-dependent transport system inner membrane component RAM_09420 PF16499 RAM_09420 RAM_09425 PF01144 Coenzyme A transferase RAM_09430 PF01144 Coenzyme A transferase RAM_09435 PF00108 Thiolase, N-terminal domain RAM_09435 PF02803 Thiolase, C-terminal domain RAM_09440 PF00775 Dioxygenase RAM_09440 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal RAM_09445 PF00775 Dioxygenase RAM_09450 PF00561 alpha/beta hydrolase fold RAM_09455 PF02627 Carboxymuconolactone decarboxylase family RAM_09460 PF01614 Bacterial transcriptional regulator RAM_09460 PF09339 IclR helix-turn-helix domain RAM_09465 PF12804 MobA-like NTP transferase domain RAM_09470 PF07728 AAA domain (dynein-related subfamily) RAM_09480 PF05762 VWA domain containing CoxE-like protein RAM_09485 PF02625 XdhC and CoxI family RAM_09485 PF13478 XdhC Rossmann domain RAM_09490 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_09490 PF01799 [2Fe-2S] binding domain RAM_09495 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_09495 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_09500 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_09500 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_09505 PF06240 Carbon monoxide dehydrogenase subunit G (CoxG) RAM_09510 PF00990 GGDEF domain RAM_09515 PF13738 Pyridine nucleotide-disulphide oxidoreductase RAM_09520 PF00248 Aldo/keto reductase family RAM_09525 PF00440 Bacterial regulatory proteins, tetR family RAM_09530 PF00041 Fibronectin type III domain RAM_09530 PF00149 Calcineurin-like phosphoesterase RAM_09530 PF00754 F5/8 type C domain RAM_09535 PF07690 Major Facilitator Superfamily RAM_09540 PF07676 WD40-like Beta Propeller Repeat RAM_09545 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_09545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_09545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_09550 PF04962 KduI/IolB family RAM_09560 PF00294 pfkB family carbohydrate kinase RAM_09565 PF00005 ABC transporter RAM_09570 PF02653 RAM_09570 RAM_09575 PF13407 Periplasmic binding protein domain RAM_09580 PF01261 Xylose isomerase-like TIM barrel RAM_09585 PF00356 Bacterial regulatory proteins, lacI family RAM_09585 PF13377 Periplasmic binding protein-like domain RAM_09590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_09590 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_09595 PF00733 Asparagine synthase RAM_09595 PF13537 Glutamine amidotransferase domain RAM_09600 PF09604 RAM_09600 RAM_09605 PF03814 RAM_09605 RAM_09610 PF00122 E1-E2 ATPase RAM_09610 PF00702 haloacid dehalogenase-like hydrolase RAM_09615 PF02669 RAM_09615 RAM_09620 PF00512 His Kinase A (phospho-acceptor) domain RAM_09620 PF00582 Universal stress protein family RAM_09620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_09620 PF02702 Osmosensitive K+ channel His kinase sensor domain RAM_09620 PF13493 Domain of unknown function (DUF4118) RAM_09625 PF00072 Response regulator receiver domain RAM_09625 PF00486 Transcriptional regulatory protein, C terminal RAM_09635 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_09635 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_09640 PF00440 Bacterial regulatory proteins, tetR family RAM_09650 PF00708 Acylphosphatase RAM_09655 PF02463 RecF/RecN/SMC N terminal domain RAM_09655 PF06470 SMC proteins Flexible Hinge Domain RAM_09660 PF11937 RAM_09660 RAM_09665 PF00474 Sodium:solute symporter family RAM_09670 PF03702 Uncharacterised protein family (UPF0075) RAM_09675 PF00448 SRP54-type protein, GTPase domain RAM_09675 PF02881 SRP54-type protein, helical bundle domain RAM_09685 PF13302 Acetyltransferase (GNAT) domain RAM_09690 PF01614 Bacterial transcriptional regulator RAM_09690 PF09339 IclR helix-turn-helix domain RAM_09695 PF01274 Malate synthase RAM_09700 PF01274 Malate synthase RAM_09715 PF10979 RAM_09715 RAM_09720 PF00375 Sodium:dicarboxylate symporter family RAM_09725 PF12802 MarR family RAM_09730 PF07905 RAM_09730 RAM_09730 PF13556 PucR C-terminal helix-turn-helix domain RAM_09735 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_09735 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_09740 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_09740 PF01799 [2Fe-2S] binding domain RAM_09745 PF01979 Amidohydrolase family RAM_09750 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_09750 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_09755 PF00652 Ricin-type beta-trefoil lectin domain RAM_09755 PF16499 RAM_09755 RAM_09760 PF00440 Bacterial regulatory proteins, tetR family RAM_09765 PF01609 Transposase DDE domain RAM_09765 PF13808 RAM_09765 RAM_09770 PF01014 Uricase RAM_09775 PF00576 HIUase/Transthyretin family RAM_09780 PF09349 OHCU decarboxylase RAM_09785 PF01910 Domain of unknown function DUF77 RAM_09785 PF13309 RAM_09785 RAM_09790 PF01979 Amidohydrolase family RAM_09795 PF03561 Allantoicase repeat RAM_09805 PF13380 CoA binding domain RAM_09810 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_09820 PF00106 short chain dehydrogenase RAM_09825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_09825 PF03466 LysR substrate binding domain RAM_09830 PF04542 Sigma-70 region 2 RAM_09830 PF08281 Sigma-70, region 4 RAM_09835 PF11575 RAM_09835 RAM_09845 PF00909 Ammonium Transporter Family RAM_09850 PF00543 Nitrogen regulatory protein P-II RAM_09855 PF01966 HD domain RAM_09860 PF01494 FAD binding domain RAM_09870 PF00440 Bacterial regulatory proteins, tetR family RAM_09875 PF00990 GGDEF domain RAM_09880 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_09885 PF00440 Bacterial regulatory proteins, tetR family RAM_09885 PF13977 Bacterial transcriptional repressor RAM_09895 PF02735 Ku70/Ku80 beta-barrel domain RAM_09900 PF01047 MarR family RAM_09905 PF00005 ABC transporter RAM_09905 PF00664 ABC transporter transmembrane region RAM_09910 PF00448 SRP54-type protein, GTPase domain RAM_09910 PF02881 SRP54-type protein, helical bundle domain RAM_09910 PF02978 Signal peptide binding domain RAM_09915 PF01979 Amidohydrolase family RAM_09920 PF02517 CAAX protease self-immunity RAM_09925 PF02517 CAAX protease self-immunity RAM_09930 PF00886 Ribosomal protein S16 RAM_09935 PF13083 KH domain RAM_09940 PF01782 RimM N-terminal domain RAM_09940 PF05239 PRC-barrel domain RAM_09950 PF01746 tRNA (Guanine-1)-methyltransferase RAM_09955 PF01245 Ribosomal protein L19 RAM_09960 PF00717 Peptidase S24-like RAM_09960 PF10502 Signal peptidase, peptidase S26 RAM_09965 PF01351 Ribonuclease HII RAM_09970 PF10611 RAM_09970 RAM_09975 PF02021 Uncharacterised protein family UPF0102 RAM_09980 PF01078 Magnesium chelatase, subunit ChlI RAM_09980 PF13335 RAM_09980 RAM_09980 PF13541 Subunit ChlI of Mg-chelatase RAM_09990 PF02481 DNA recombination-mediator protein A RAM_09995 PF00589 Phage integrase family RAM_09995 PF02899 Phage integrase, N-terminal SAM-like domain RAM_10000 PF04539 Sigma-70 region 3 RAM_10000 PF04542 Sigma-70 region 2 RAM_10000 PF04545 Sigma-70, region 4 RAM_10005 PF01551 Peptidase family M23 RAM_10010 PF00318 Ribosomal protein S2 RAM_10015 PF00889 Elongation factor TS RAM_10020 PF00696 Amino acid kinase family RAM_10025 PF01765 Ribosome recycling factor RAM_10030 PF01148 Cytidylyltransferase family RAM_10040 PF08241 Methyltransferase domain RAM_10045 PF03551 Transcriptional regulator PadR-like family RAM_10050 PF01032 FecCD transport family RAM_10055 PF01032 FecCD transport family RAM_10060 PF00005 ABC transporter RAM_10065 PF01497 Periplasmic binding protein RAM_10070 PF00456 Transketolase, thiamine diphosphate binding domain RAM_10080 PF04055 Radical SAM superfamily RAM_10090 PF07691 PA14 domain RAM_10105 PF02633 Creatinine amidohydrolase RAM_10110 PF01565 FAD binding domain RAM_10120 PF00528 Binding-protein-dependent transport system inner membrane component RAM_10125 PF00005 ABC transporter RAM_10130 PF07969 Amidohydrolase family RAM_10135 PF07883 Cupin domain RAM_10135 PF13560 Helix-turn-helix domain RAM_10140 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_10140 PF00175 Oxidoreductase NAD-binding domain RAM_10140 PF00970 Oxidoreductase FAD-binding domain RAM_10145 PF01979 Amidohydrolase family RAM_10175 PF06114 Domain of unknown function (DUF955) RAM_10180 PF00384 Molybdopterin oxidoreductase RAM_10180 PF01568 Molydopterin dinucleotide binding domain RAM_10180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_10185 PF00144 Beta-lactamase RAM_10190 PF13411 MerR HTH family regulatory protein RAM_10195 PF07690 Major Facilitator Superfamily RAM_10200 PF02597 ThiS family RAM_10210 PF03795 YCII-related domain RAM_10215 PF13460 NADH(P)-binding RAM_10220 PF01435 Peptidase family M48 RAM_10225 PF08240 Alcohol dehydrogenase GroES-like domain RAM_10225 PF13602 Zinc-binding dehydrogenase RAM_10230 PF01381 Helix-turn-helix RAM_10240 PF03795 YCII-related domain RAM_10245 PF04542 Sigma-70 region 2 RAM_10245 PF08281 Sigma-70, region 4 RAM_10250 PF00378 Enoyl-CoA hydratase/isomerase family RAM_10255 PF00440 Bacterial regulatory proteins, tetR family RAM_10260 PF03960 ArsC family RAM_10265 PF00291 Pyridoxal-phosphate dependent enzyme RAM_10270 PF06966 RAM_10270 RAM_10280 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_10285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_10285 PF03466 LysR substrate binding domain RAM_10290 PF00067 Cytochrome P450 RAM_10295 PF12697 Alpha/beta hydrolase family RAM_10300 PF00486 Transcriptional regulatory protein, C terminal RAM_10300 PF00931 NB-ARC domain RAM_10300 PF01381 Helix-turn-helix RAM_10300 PF03704 Bacterial transcriptional activator domain RAM_10300 PF12862 RAM_10300 RAM_10300 PF13424 Tetratricopeptide repeat RAM_10310 PF08242 Methyltransferase domain RAM_10315 PF00155 Aminotransferase class I and II RAM_10315 PF00392 Bacterial regulatory proteins, gntR family RAM_10320 PF07690 Major Facilitator Superfamily RAM_10325 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_10330 PF10939 RAM_10330 RAM_10335 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RAM_10335 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal RAM_10335 PF13288 DXP reductoisomerase C-terminal domain RAM_10340 PF02163 Peptidase family M50 RAM_10345 PF04551 GcpE protein RAM_10350 PF13489 Methyltransferase domain RAM_10360 PF12833 Helix-turn-helix domain RAM_10365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_10370 PF13783 RAM_10370 RAM_10375 PF08445 FR47-like protein RAM_10375 PF13312 RAM_10375 RAM_10380 PF00905 Penicillin binding protein transpeptidase domain RAM_10380 PF05223 NTF2-like N-terminal transpeptidase domain RAM_10385 PF00557 Metallopeptidase family M24 RAM_10390 PF01061 RAM_10390 RAM_10395 PF00005 ABC transporter RAM_10395 PF13732 RAM_10395 RAM_10400 PF13349 RAM_10400 RAM_10410 PF00392 Bacterial regulatory proteins, gntR family RAM_10410 PF07729 FCD domain RAM_10415 PF07690 Major Facilitator Superfamily RAM_10420 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_10420 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_10425 PF13539 D-alanyl-D-alanine carboxypeptidase RAM_10435 PF00089 Trypsin RAM_10440 PF13673 Acetyltransferase (GNAT) domain RAM_10445 PF00155 Aminotransferase class I and II RAM_10450 PF00270 DEAD/DEAH box helicase RAM_10450 PF00271 Helicase conserved C-terminal domain RAM_10455 PF01163 RIO1 family RAM_10460 PF13450 NAD(P)-binding Rossmann-like domain RAM_10485 PF00753 Metallo-beta-lactamase superfamily RAM_10490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_10490 PF03466 LysR substrate binding domain RAM_10495 PF05076 Suppressor of fused protein (SUFU) RAM_10500 PF01266 FAD dependent oxidoreductase RAM_10505 PF03883 RAM_10505 RAM_10510 PF00583 Acetyltransferase (GNAT) family RAM_10525 PF04149 RAM_10525 RAM_10530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_10535 PF09594 RAM_10535 RAM_10545 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_10545 PF03129 Anticodon binding domain RAM_10545 PF04073 Aminoacyl-tRNA editing domain RAM_10560 PF09924 Uncharacterized conserved protein (DUF2156) RAM_10575 PF05593 RAM_10575 RAM_10580 PF12710 haloacid dehalogenase-like hydrolase RAM_10590 PF01894 Uncharacterised protein family UPF0047 RAM_10595 PF00072 Response regulator receiver domain RAM_10595 PF00196 Bacterial regulatory proteins, luxR family RAM_10600 PF07730 Histidine kinase RAM_10600 PF13796 RAM_10600 RAM_10610 PF00487 RAM_10610 RAM_10615 PF00175 Oxidoreductase NAD-binding domain RAM_10615 PF00970 Oxidoreductase FAD-binding domain RAM_10620 PF00440 Bacterial regulatory proteins, tetR family RAM_10625 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RAM_10625 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RAM_10630 PF12769 Domain of unknown function (DUF3814) RAM_10635 PF02233 NAD(P) transhydrogenase beta subunit RAM_10645 PF11774 Lsr2 RAM_10650 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_10650 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_10660 PF11343 RAM_10660 RAM_10670 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_10670 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_10675 PF00550 Phosphopantetheine attachment site RAM_10680 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_10680 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_10685 PF00698 Acyl transferase domain RAM_10690 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_10695 PF13556 PucR C-terminal helix-turn-helix domain RAM_10700 PF00005 ABC transporter RAM_10700 PF13732 RAM_10700 RAM_10705 PF12698 ABC-2 family transporter protein RAM_10710 PF05552 Conserved TM helix RAM_10715 PF04973 RAM_10715 RAM_10720 PF02652 RAM_10720 RAM_10725 PF00440 Bacterial regulatory proteins, tetR family RAM_10730 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_10735 PF01070 FMN-dependent dehydrogenase RAM_10740 PF00456 Transketolase, thiamine diphosphate binding domain RAM_10745 PF11253 RAM_10745 RAM_10750 PF00578 AhpC/TSA family RAM_10755 PF00239 Resolvase, N terminal domain RAM_10755 PF07508 Recombinase RAM_10755 PF13408 Recombinase zinc beta ribbon domain RAM_10760 PF00239 Resolvase, N terminal domain RAM_10770 PF01555 DNA methylase RAM_10775 PF13814 RAM_10775 RAM_10780 PF02534 Type IV secretory system Conjugative DNA transfer RAM_10820 PF14430 RAM_10820 RAM_10825 PF14428 RAM_10825 RAM_10830 PF00089 Trypsin RAM_10855 PF01381 Helix-turn-helix RAM_10860 PF12146 Putative lysophospholipase RAM_10865 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_10870 PF00899 ThiF family RAM_10880 PF14452 RAM_10880 RAM_10890 PF06114 Domain of unknown function (DUF955) RAM_10900 PF07690 Major Facilitator Superfamily RAM_10905 PF02627 Carboxymuconolactone decarboxylase family RAM_10910 PF12802 MarR family RAM_10915 PF07883 Cupin domain RAM_10920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_10920 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_10920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_10925 PF00106 short chain dehydrogenase RAM_10930 PF00266 Aminotransferase class-V RAM_10935 PF00392 Bacterial regulatory proteins, gntR family RAM_10935 PF07729 FCD domain RAM_10940 PF00149 Calcineurin-like phosphoesterase RAM_10945 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_10945 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_10950 PF00206 Lyase RAM_10950 PF10415 Fumarase C C-terminus RAM_10955 PF06089 RAM_10955 RAM_10960 PF00324 Amino acid permease RAM_10965 PF00392 Bacterial regulatory proteins, gntR family RAM_10965 PF07729 FCD domain RAM_10970 PF02811 PHP domain RAM_10970 PF07733 Bacterial DNA polymerase III alpha subunit RAM_10970 PF14579 Helix-hairpin-helix motif RAM_10975 PF07690 Major Facilitator Superfamily RAM_10980 PF06772 RAM_10980 RAM_10985 PF03734 L,D-transpeptidase catalytic domain RAM_10990 PF01734 Patatin-like phospholipase RAM_10995 PF09335 RAM_10995 RAM_11000 PF04055 Radical SAM superfamily RAM_11000 PF16881 RAM_11000 RAM_11005 PF00106 short chain dehydrogenase RAM_11015 PF00440 Bacterial regulatory proteins, tetR family RAM_11020 PF00296 Luciferase-like monooxygenase RAM_11025 PF03099 Biotin/lipoate A/B protein ligase family RAM_11030 PF01569 PAP2 superfamily RAM_11035 PF01370 NAD dependent epimerase/dehydratase family RAM_11035 PF08338 Domain of unknown function (DUF1731) RAM_11045 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAM_11045 PF00364 Biotin-requiring enzyme RAM_11045 PF02817 e3 binding domain RAM_11050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_11050 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_11060 PF00583 Acetyltransferase (GNAT) family RAM_11070 PF16868 RAM_11070 RAM_11075 PF06808 RAM_11075 RAM_11080 PF00883 Cytosol aminopeptidase family, catalytic domain RAM_11080 PF02789 Cytosol aminopeptidase family, N-terminal domain RAM_11090 PF04167 Protein of unknown function (DUF402) RAM_11100 PF01063 Aminotransferase class IV RAM_11105 PF02277 Phosphoribosyltransferase RAM_11110 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RAM_11120 PF00392 Bacterial regulatory proteins, gntR family RAM_11120 PF07702 UTRA domain RAM_11125 PF01259 SAICAR synthetase RAM_11130 PF00248 Aldo/keto reductase family RAM_11140 PF11241 RAM_11140 RAM_11145 PF01521 Iron-sulphur cluster biosynthesis RAM_11155 PF00294 pfkB family carbohydrate kinase RAM_11165 PF00733 Asparagine synthase RAM_11165 PF13537 Glutamine amidotransferase domain RAM_11170 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RAM_11175 PF12270 RAM_11175 RAM_11180 PF01965 DJ-1/PfpI family RAM_11180 PF12833 Helix-turn-helix domain RAM_11185 PF00892 EamA-like transporter family RAM_11190 PF00591 Glycosyl transferase family, a/b domain RAM_11190 PF02885 Glycosyl transferase family, helical bundle domain RAM_11205 PF00510 Cytochrome c oxidase subunit III RAM_11210 PF00034 Cytochrome c RAM_11210 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RAM_11215 PF00355 Rieske [2Fe-2S] domain RAM_11220 PF13631 Cytochrome b(N-terminal)/b6/petB RAM_11225 PF13376 RAM_11225 RAM_11230 PF01037 AsnC family RAM_11235 PF00929 Exonuclease RAM_11235 PF01541 GIY-YIG catalytic domain RAM_11240 PF05991 RAM_11240 RAM_11250 PF00877 NlpC/P60 family RAM_11255 PF00534 Glycosyl transferases group 1 RAM_11255 PF13439 Glycosyltransferase Family 4 RAM_11265 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_11270 PF00067 Cytochrome P450 RAM_11275 PF00202 Aminotransferase class-III RAM_11280 PF00484 Carbonic anhydrase RAM_11280 PF00916 RAM_11280 RAM_11285 PF00484 Carbonic anhydrase RAM_11285 PF00916 RAM_11285 RAM_11290 PF13500 AAA domain RAM_11295 PF04055 Radical SAM superfamily RAM_11295 PF06968 Biotin and Thiamin Synthesis associated domain RAM_11305 PF10821 RAM_11305 RAM_11310 PF01435 Peptidase family M48 RAM_11315 PF02190 ATP-dependent protease La (LON) domain RAM_11320 PF00293 NUDIX domain RAM_11325 PF02445 Quinolinate synthetase A protein RAM_11330 PF00890 FAD binding domain RAM_11330 PF02910 Fumarate reductase flavoprotein C-term RAM_11335 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RAM_11335 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RAM_11340 PF00082 Subtilase family RAM_11350 PF06259 Alpha/beta hydrolase RAM_11355 PF06013 Proteins of 100 residues with WXG RAM_11370 PF06013 Proteins of 100 residues with WXG RAM_11380 PF00501 AMP-binding enzyme RAM_11380 PF13193 AMP-binding enzyme C-terminal domain RAM_11385 PF00089 Trypsin RAM_11400 PF01580 FtsK/SpoIIIE family RAM_11415 PF06013 Proteins of 100 residues with WXG RAM_11425 PF02575 YbaB/EbfC DNA-binding family RAM_11430 PF08817 WXG100 protein secretion system (Wss), protein YukD RAM_11435 PF17189 RAM_11435 RAM_11440 PF11203 RAM_11440 RAM_11445 PF05108 Protein of unknown function (DUF690) RAM_11450 PF00072 Response regulator receiver domain RAM_11450 PF00196 Bacterial regulatory proteins, luxR family RAM_11455 PF00072 Response regulator receiver domain RAM_11455 PF00196 Bacterial regulatory proteins, luxR family RAM_11460 PF00795 Carbon-nitrogen hydrolase RAM_11465 PF00815 Histidinol dehydrogenase RAM_11470 PF00155 Aminotransferase class I and II RAM_11475 PF00475 Imidazoleglycerol-phosphate dehydratase RAM_11480 PF12706 Beta-lactamase superfamily domain RAM_11490 PF00440 Bacterial regulatory proteins, tetR family RAM_11495 PF06441 Epoxide hydrolase N terminus RAM_11500 PF03176 MMPL family RAM_11505 PF00440 Bacterial regulatory proteins, tetR family RAM_11510 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family RAM_11515 PF00376 MerR family regulatory protein RAM_11515 PF09278 MerR, DNA binding RAM_11520 PF00456 Transketolase, thiamine diphosphate binding domain RAM_11525 PF02779 Transketolase, pyrimidine binding domain RAM_11530 PF00293 NUDIX domain RAM_11535 PF07978 NIPSNAP RAM_11540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_11540 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_11540 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_11555 PF00117 Glutamine amidotransferase class-I RAM_11560 PF00977 Histidine biosynthesis protein RAM_11565 PF00106 short chain dehydrogenase RAM_11575 PF00440 Bacterial regulatory proteins, tetR family RAM_11580 PF07045 Protein of unknown function (DUF1330) RAM_11585 PF00583 Acetyltransferase (GNAT) family RAM_11590 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_11595 PF06475 Putative glycolipid-binding RAM_11610 PF04542 Sigma-70 region 2 RAM_11610 PF08281 Sigma-70, region 4 RAM_11615 PF02333 Phytase RAM_11620 PF00977 Histidine biosynthesis protein RAM_11630 PF01502 Phosphoribosyl-AMP cyclohydrolase RAM_11635 PF06993 RAM_11635 RAM_11640 PF04149 RAM_11640 RAM_11650 PF12158 RAM_11650 RAM_11660 PF00440 Bacterial regulatory proteins, tetR family RAM_11665 PF00425 chorismate binding enzyme RAM_11665 PF04715 Anthranilate synthase component I, N terminal region RAM_11670 PF09534 RAM_11670 RAM_11675 PF00218 Indole-3-glycerol phosphate synthase RAM_11680 PF00291 Pyridoxal-phosphate dependent enzyme RAM_11685 PF00290 Tryptophan synthase alpha chain RAM_11690 PF13411 MerR HTH family regulatory protein RAM_11695 PF05685 Putative restriction endonuclease RAM_11700 PF01510 N-acetylmuramoyl-L-alanine amidase RAM_11710 PF00120 Glutamine synthetase, catalytic domain RAM_11710 PF16952 RAM_11710 RAM_11715 PF13520 Amino acid permease RAM_11720 PF04909 Amidohydrolase RAM_11725 PF01546 Peptidase family M20/M25/M40 RAM_11725 PF07687 Peptidase dimerisation domain RAM_11730 PF01790 RAM_11730 RAM_11735 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_11740 PF00310 Glutamine amidotransferases class-II RAM_11740 PF01493 GXGXG motif RAM_11740 PF01645 Conserved region in glutamate synthase RAM_11740 PF04898 Glutamate synthase central domain RAM_11745 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_11745 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RAM_11760 PF00561 alpha/beta hydrolase fold RAM_11765 PF01474 Class-II DAHP synthetase family RAM_11770 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_11775 PF13560 Helix-turn-helix domain RAM_11780 PF03007 RAM_11780 RAM_11780 PF06974 RAM_11780 RAM_11790 PF01145 SPFH domain / Band 7 family RAM_11790 PF15975 RAM_11790 RAM_11800 PF00069 Protein kinase domain RAM_11800 PF03793 PASTA domain RAM_11810 PF11706 CGNR zinc finger RAM_11815 PF00296 Luciferase-like monooxygenase RAM_11820 PF00494 Squalene/phytoene synthase RAM_11825 PF01593 Flavin containing amine oxidoreductase RAM_11830 PF00348 Polyprenyl synthetase RAM_11835 PF03243 Alkylmercury lyase RAM_11840 PF02219 Methylenetetrahydrofolate reductase RAM_11845 PF05960 Bacterial protein of unknown function (DUF885) RAM_11850 PF00892 EamA-like transporter family RAM_11855 PF00583 Acetyltransferase (GNAT) family RAM_11860 PF04073 Aminoacyl-tRNA editing domain RAM_11870 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_11880 PF00583 Acetyltransferase (GNAT) family RAM_11885 PF01327 Polypeptide deformylase RAM_11890 PF00270 DEAD/DEAH box helicase RAM_11890 PF00271 Helicase conserved C-terminal domain RAM_11890 PF08494 RAM_11890 RAM_11895 PF00455 RAM_11895 RAM_11895 PF08220 DeoR-like helix-turn-helix domain RAM_11900 PF07690 Major Facilitator Superfamily RAM_11905 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RAM_11910 PF00012 Hsp70 protein RAM_11915 PF11248 RAM_11915 RAM_11920 PF00154 recA bacterial DNA recombination protein RAM_11925 PF02631 RecX family RAM_11945 PF01081 KDPG and KHG aldolase RAM_11950 PF00920 Dehydratase family RAM_11965 PF00890 FAD binding domain RAM_11965 PF02910 Fumarate reductase flavoprotein C-term RAM_11970 PF13085 2Fe-2S iron-sulfur cluster binding domain RAM_11970 PF13183 4Fe-4S dicluster domain RAM_11975 PF00583 Acetyltransferase (GNAT) family RAM_11980 PF04149 RAM_11980 RAM_11985 PF13560 Helix-turn-helix domain RAM_11990 PF06912 RAM_11990 RAM_12000 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_12005 PF00528 Binding-protein-dependent transport system inner membrane component RAM_12010 PF00528 Binding-protein-dependent transport system inner membrane component RAM_12015 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_12020 PF00005 ABC transporter RAM_12025 PF00072 Response regulator receiver domain RAM_12025 PF00486 Transcriptional regulatory protein, C terminal RAM_12030 PF00512 His Kinase A (phospho-acceptor) domain RAM_12030 PF00672 HAMP domain RAM_12030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_12035 PF16868 RAM_12035 RAM_12040 PF01638 HxlR-like helix-turn-helix RAM_12055 PF01569 PAP2 superfamily RAM_12055 PF12951 RAM_12055 RAM_12060 PF01419 Jacalin-like lectin domain RAM_12065 PF00069 Protein kinase domain RAM_12070 PF00652 Ricin-type beta-trefoil lectin domain RAM_12070 PF04616 Glycosyl hydrolases family 43 RAM_12075 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_12085 PF00440 Bacterial regulatory proteins, tetR family RAM_12085 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_12090 PF01494 FAD binding domain RAM_12095 PF00440 Bacterial regulatory proteins, tetR family RAM_12095 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_12100 PF01494 FAD binding domain RAM_12105 PF00919 Uncharacterized protein family UPF0004 RAM_12105 PF04055 Radical SAM superfamily RAM_12125 PF03993 RAM_12125 RAM_12130 PF01715 IPP transferase RAM_12135 PF01678 Diaminopimelate epimerase RAM_12140 PF00133 tRNA synthetases class I (I, L, M and V) RAM_12140 PF08264 Anticodon-binding domain of tRNA RAM_12145 PF05977 Transmembrane secretion effector RAM_12150 PF12840 Helix-turn-helix domain RAM_12155 PF01926 50S ribosome-binding GTPase RAM_12155 PF13167 RAM_12155 RAM_12155 PF16360 RAM_12155 RAM_12165 PF00717 Peptidase S24-like RAM_12165 PF01726 LexA DNA binding domain RAM_12170 PF01476 LysM domain RAM_12175 PF03477 ATP cone domain RAM_12180 PF02867 Ribonucleotide reductase, barrel domain RAM_12180 PF08471 RAM_12180 RAM_12200 PF02525 Flavodoxin-like fold RAM_12205 PF00893 Small Multidrug Resistance protein RAM_12210 PF00326 Prolyl oligopeptidase family RAM_12210 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RAM_12215 PF04228 RAM_12215 RAM_12220 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_12225 PF00155 Aminotransferase class I and II RAM_12225 PF00392 Bacterial regulatory proteins, gntR family RAM_12235 PF00571 CBS domain RAM_12240 PF13598 RAM_12240 RAM_12240 PF13600 RAM_12240 RAM_12245 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_12245 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_12250 PF02698 DUF218 domain RAM_12255 PF01565 FAD binding domain RAM_12255 PF08031 Berberine and berberine like RAM_12260 PF00072 Response regulator receiver domain RAM_12260 PF00196 Bacterial regulatory proteins, luxR family RAM_12265 PF07730 Histidine kinase RAM_12270 PF01551 Peptidase family M23 RAM_12275 PF13830 RAM_12275 RAM_12280 PF01370 NAD dependent epimerase/dehydratase family RAM_12285 PF00288 GHMP kinases N terminal domain RAM_12285 PF08544 GHMP kinases C terminal RAM_12285 PF10509 Galactokinase galactose-binding signature RAM_12290 PF01325 Iron dependent repressor, N-terminal DNA binding domain RAM_12290 PF02742 Iron dependent repressor, metal binding and dimerisation domain RAM_12290 PF04023 FeoA domain RAM_12295 PF00581 Rhodanese-like domain RAM_12300 PF00850 Histone deacetylase domain RAM_12305 PF00583 Acetyltransferase (GNAT) family RAM_12305 PF13380 CoA binding domain RAM_12305 PF13549 ATP-grasp domain RAM_12305 PF13607 Succinyl-CoA ligase like flavodoxin domain RAM_12310 PF00144 Beta-lactamase RAM_12315 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_12315 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_12320 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_12320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12325 PF13370 4Fe-4S single cluster domain RAM_12330 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_12335 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_12340 PF02405 RAM_12340 RAM_12345 PF02405 RAM_12345 RAM_12350 PF02470 RAM_12350 RAM_12350 PF11887 RAM_12350 RAM_12355 PF02470 RAM_12355 RAM_12360 PF02470 RAM_12360 RAM_12360 PF11887 RAM_12360 RAM_12365 PF02470 RAM_12365 RAM_12370 PF02470 RAM_12370 RAM_12370 PF11887 RAM_12370 RAM_12375 PF02470 RAM_12375 RAM_12395 PF12897 Alanine-glyoxylate amino-transferase RAM_12400 PF13668 Ferritin-like domain RAM_12405 PF01494 FAD binding domain RAM_12410 PF00356 Bacterial regulatory proteins, lacI family RAM_12410 PF13377 Periplasmic binding protein-like domain RAM_12415 PF13416 Bacterial extracellular solute-binding protein RAM_12420 PF00528 Binding-protein-dependent transport system inner membrane component RAM_12425 PF00528 Binding-protein-dependent transport system inner membrane component RAM_12430 PF00232 Glycosyl hydrolase family 1 RAM_12435 PF00501 AMP-binding enzyme RAM_12445 PF00149 Calcineurin-like phosphoesterase RAM_12450 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_12455 PF02374 Anion-transporting ATPase RAM_12465 PF00480 ROK family RAM_12475 PF00293 NUDIX domain RAM_12480 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_12490 PF12146 Putative lysophospholipase RAM_12495 PF01553 Acyltransferase RAM_12500 PF16473 RAM_12500 RAM_12505 PF00793 DAHP synthetase I family RAM_12510 PF00365 Phosphofructokinase RAM_12520 PF04542 Sigma-70 region 2 RAM_12520 PF08281 Sigma-70, region 4 RAM_12525 PF00221 Aromatic amino acid lyase RAM_12530 PF01152 Bacterial-like globin RAM_12535 PF01638 HxlR-like helix-turn-helix RAM_12540 PF01022 Bacterial regulatory protein, arsR family RAM_12545 PF00704 Glycosyl hydrolases family 18 RAM_12550 PF09365 RAM_12550 RAM_12555 PF00224 Pyruvate kinase, barrel domain RAM_12555 PF02887 Pyruvate kinase, alpha/beta domain RAM_12560 PF13622 Thioesterase-like superfamily RAM_12565 PF13560 Helix-turn-helix domain RAM_12570 PF04149 RAM_12570 RAM_12580 PF00196 Bacterial regulatory proteins, luxR family RAM_12580 PF13191 AAA ATPase domain RAM_12585 PF00171 Aldehyde dehydrogenase family RAM_12595 PF00440 Bacterial regulatory proteins, tetR family RAM_12600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_12600 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_12600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12605 PF02515 CoA-transferase family III RAM_12610 PF13302 Acetyltransferase (GNAT) domain RAM_12615 PF00378 Enoyl-CoA hydratase/isomerase family RAM_12630 PF13406 Transglycosylase SLT domain RAM_12640 PF12823 RAM_12640 RAM_12645 PF07690 Major Facilitator Superfamily RAM_12650 PF00440 Bacterial regulatory proteins, tetR family RAM_12655 PF00474 Sodium:solute symporter family RAM_12660 PF04341 RAM_12660 RAM_12665 PF00672 HAMP domain RAM_12665 PF08376 Nitrate and nitrite sensing RAM_12670 PF03259 Roadblock/LC7 domain RAM_12675 PF05331 RAM_12675 RAM_12680 PF03029 Conserved hypothetical ATP binding protein RAM_12685 PF05988 RAM_12685 RAM_12690 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_12695 PF12840 Helix-turn-helix domain RAM_12700 PF01642 Methylmalonyl-CoA mutase RAM_12700 PF02310 B12 binding domain RAM_12700 PF03308 ArgK protein RAM_12705 PF13649 Methyltransferase domain RAM_12710 PF00296 Luciferase-like monooxygenase RAM_12715 PF00440 Bacterial regulatory proteins, tetR family RAM_12720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_12720 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_12720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12725 PF00176 SNF2 family N-terminal domain RAM_12725 PF00271 Helicase conserved C-terminal domain RAM_12725 PF12419 RAM_12725 RAM_12730 PF04434 RAM_12730 RAM_12735 PF07859 alpha/beta hydrolase fold RAM_12740 PF03007 RAM_12740 RAM_12740 PF06974 RAM_12740 RAM_12745 PF04075 Domain of unknown function (DUF385) RAM_12750 PF00561 alpha/beta hydrolase fold RAM_12755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_12755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12760 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_12760 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_12760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12765 PF01796 RAM_12765 RAM_12765 PF13452 N-terminal half of MaoC dehydratase RAM_12775 PF00108 Thiolase, N-terminal domain RAM_12780 PF17197 RAM_12780 RAM_12785 PF01687 Riboflavin kinase RAM_12790 PF01575 MaoC like domain RAM_12790 PF13452 N-terminal half of MaoC dehydratase RAM_12795 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_12795 PF00175 Oxidoreductase NAD-binding domain RAM_12795 PF00970 Oxidoreductase FAD-binding domain RAM_12805 PF00355 Rieske [2Fe-2S] domain RAM_12810 PF00890 FAD binding domain RAM_12815 PF00890 FAD binding domain RAM_12820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_12820 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_12825 PF00561 alpha/beta hydrolase fold RAM_12830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_12835 PF01613 Flavin reductase like domain RAM_12845 PF01713 Smr domain RAM_12850 PF12706 Beta-lactamase superfamily domain RAM_12855 PF00487 RAM_12855 RAM_12860 PF00005 ABC transporter RAM_12870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_12875 PF12833 Helix-turn-helix domain RAM_12880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_12880 PF03466 LysR substrate binding domain RAM_12885 PF07690 Major Facilitator Superfamily RAM_12890 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_12895 PF13459 4Fe-4S single cluster domain RAM_12900 PF01794 RAM_12900 RAM_12905 PF13628 RAM_12905 RAM_12910 PF03640 RAM_12910 RAM_12915 PF04542 Sigma-70 region 2 RAM_12915 PF04545 Sigma-70, region 4 RAM_12920 PF13490 Putative zinc-finger RAM_12925 PF09362 RAM_12925 RAM_12930 PF03640 RAM_12930 RAM_12935 PF01037 AsnC family RAM_12935 PF13404 AsnC-type helix-turn-helix domain RAM_12940 PF01546 Peptidase family M20/M25/M40 RAM_12940 PF07687 Peptidase dimerisation domain RAM_12950 PF01979 Amidohydrolase family RAM_12955 PF00561 alpha/beta hydrolase fold RAM_12960 PF00108 Thiolase, N-terminal domain RAM_12960 PF02803 Thiolase, C-terminal domain RAM_12965 PF00067 Cytochrome P450 RAM_12970 PF01738 Dienelactone hydrolase family RAM_12975 PF01841 Transglutaminase-like superfamily RAM_12980 PF03631 RAM_12980 RAM_12995 PF01796 RAM_12995 RAM_12995 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) RAM_13000 PF00378 Enoyl-CoA hydratase/isomerase family RAM_13005 PF00501 AMP-binding enzyme RAM_13005 PF13193 AMP-binding enzyme C-terminal domain RAM_13010 PF03060 Nitronate monooxygenase RAM_13015 PF00089 Trypsin RAM_13020 PF13520 Amino acid permease RAM_13025 PF00392 Bacterial regulatory proteins, gntR family RAM_13025 PF07702 UTRA domain RAM_13045 PF05681 RAM_13045 RAM_13045 PF05683 Fumarase C-terminus RAM_13050 PF00140 Sigma-70 factor, region 1 RAM_13050 PF04539 Sigma-70 region 3 RAM_13050 PF04542 Sigma-70 region 2 RAM_13050 PF04545 Sigma-70, region 4 RAM_13055 PF02580 D-Tyr-tRNA(Tyr) deacylase RAM_13060 PF05175 Methyltransferase small domain RAM_13065 PF01546 Peptidase family M20/M25/M40 RAM_13065 PF07687 Peptidase dimerisation domain RAM_13070 PF11298 RAM_13070 RAM_13075 PF00294 pfkB family carbohydrate kinase RAM_13080 PF04227 Indigoidine synthase A like protein RAM_13090 PF07070 RAM_13090 RAM_13095 PF11238 RAM_13095 RAM_13105 PF00873 AcrB/AcrD/AcrF family RAM_13110 PF03631 RAM_13110 RAM_13115 PF04851 Type III restriction enzyme, res subunit RAM_13120 PF13407 Periplasmic binding protein domain RAM_13125 PF00005 ABC transporter RAM_13130 PF02653 RAM_13130 RAM_13135 PF00480 ROK family RAM_13145 PF00892 EamA-like transporter family RAM_13150 PF00120 Glutamine synthetase, catalytic domain RAM_13160 PF13520 Amino acid permease RAM_13165 PF02446 4-alpha-glucanotransferase RAM_13170 PF00128 Alpha amylase, catalytic domain RAM_13170 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_13175 PF00128 Alpha amylase, catalytic domain RAM_13180 PF00128 Alpha amylase, catalytic domain RAM_13180 PF11941 Domain of unknown function (DUF3459) RAM_13185 PF00128 Alpha amylase, catalytic domain RAM_13185 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_13190 PF00128 Alpha amylase, catalytic domain RAM_13190 PF11896 Domain of unknown function (DUF3416) RAM_13195 PF00128 Alpha amylase, catalytic domain RAM_13195 PF16657 RAM_13195 RAM_13200 PF01636 Phosphotransferase enzyme family RAM_13205 PF00128 Alpha amylase, catalytic domain RAM_13205 PF02806 Alpha amylase, C-terminal all-beta domain RAM_13205 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_13215 PF00140 Sigma-70 factor, region 1 RAM_13215 PF04539 Sigma-70 region 3 RAM_13215 PF04542 Sigma-70 region 2 RAM_13215 PF04545 Sigma-70, region 4 RAM_13220 PF00480 ROK family RAM_13225 PF00459 Inositol monophosphatase family RAM_13230 PF13399 LytR cell envelope-related transcriptional attenuator RAM_13235 PF13834 RAM_13235 RAM_13240 PF11292 RAM_13240 RAM_13245 PF00692 dUTPase RAM_13250 PF12502 RAM_13250 RAM_13265 PF11361 RAM_13265 RAM_13270 PF02080 TrkA-C domain RAM_13270 PF02254 TrkA-N domain RAM_13275 PF02080 TrkA-C domain RAM_13275 PF02254 TrkA-N domain RAM_13280 PF13520 Amino acid permease RAM_13285 PF01938 TRAM domain RAM_13285 PF05958 tRNA (Uracil-5-)-methyltransferase RAM_13290 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_13295 PF00171 Aldehyde dehydrogenase family RAM_13300 PF02779 Transketolase, pyrimidine binding domain RAM_13300 PF02780 Transketolase, C-terminal domain RAM_13300 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RAM_13305 PF00356 Bacterial regulatory proteins, lacI family RAM_13305 PF13377 Periplasmic binding protein-like domain RAM_13315 PF00171 Aldehyde dehydrogenase family RAM_13320 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_13320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_13320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_13325 PF00491 Arginase family RAM_13330 PF00474 Sodium:solute symporter family RAM_13335 PF07905 RAM_13335 RAM_13335 PF13556 PucR C-terminal helix-turn-helix domain RAM_13340 PF00072 Response regulator receiver domain RAM_13340 PF00486 Transcriptional regulatory protein, C terminal RAM_13345 PF00512 His Kinase A (phospho-acceptor) domain RAM_13345 PF00672 HAMP domain RAM_13345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_13350 PF07859 alpha/beta hydrolase fold RAM_13365 PF00378 Enoyl-CoA hydratase/isomerase family RAM_13365 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_13365 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_13370 PF00108 Thiolase, N-terminal domain RAM_13370 PF02803 Thiolase, C-terminal domain RAM_13375 PF06197 RAM_13375 RAM_13385 PF01425 Amidase RAM_13390 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain RAM_13390 PF00364 Biotin-requiring enzyme RAM_13390 PF02626 Allophanate hydrolase subunit 2 RAM_13390 PF02682 Allophanate hydrolase subunit 1 RAM_13390 PF02785 Biotin carboxylase C-terminal domain RAM_13390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_13395 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain RAM_13400 PF09347 Domain of unknown function (DUF1989) RAM_13405 PF09347 Domain of unknown function (DUF1989) RAM_13410 PF13520 Amino acid permease RAM_13415 PF00440 Bacterial regulatory proteins, tetR family RAM_13420 PF00570 HRDC domain RAM_13420 PF01612 3'-5' exonuclease RAM_13425 PF00072 Response regulator receiver domain RAM_13425 PF00196 Bacterial regulatory proteins, luxR family RAM_13430 PF11452 RAM_13430 RAM_13435 PF01208 Uroporphyrinogen decarboxylase (URO-D) RAM_13440 PF01593 Flavin containing amine oxidoreductase RAM_13445 PF06778 Chlorite dismutase RAM_13450 PF02515 CoA-transferase family III RAM_13460 PF05114 Protein of unknown function (DUF692) RAM_13475 PF01641 SelR domain RAM_13485 PF00069 Protein kinase domain RAM_13490 PF09335 RAM_13490 RAM_13505 PF00296 Luciferase-like monooxygenase RAM_13510 PF00575 S1 RNA binding domain RAM_13515 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_13520 PF13556 PucR C-terminal helix-turn-helix domain RAM_13525 PF00171 Aldehyde dehydrogenase family RAM_13540 PF00085 Thioredoxin RAM_13545 PF10944 RAM_13545 RAM_13550 PF03795 YCII-related domain RAM_13555 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_13560 PF04542 Sigma-70 region 2 RAM_13560 PF08281 Sigma-70, region 4 RAM_13565 PF08386 TAP-like protein RAM_13570 PF01068 ATP dependent DNA ligase domain RAM_13570 PF04679 ATP dependent DNA ligase C terminal region RAM_13585 PF03780 RAM_13585 RAM_13595 PF03780 RAM_13595 RAM_13605 PF04542 Sigma-70 region 2 RAM_13605 PF08281 Sigma-70, region 4 RAM_13610 PF01872 RibD C-terminal domain RAM_13615 PF03969 AFG1-like ATPase RAM_13625 PF01266 FAD dependent oxidoreductase RAM_13630 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_13635 PF10009 RAM_13635 RAM_13640 PF00202 Aminotransferase class-III RAM_13645 PF12840 Helix-turn-helix domain RAM_13650 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_13655 PF03976 Polyphosphate kinase 2 (PPK2) RAM_13660 PF00326 Prolyl oligopeptidase family RAM_13660 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region RAM_13665 PF00296 Luciferase-like monooxygenase RAM_13670 PF02537 RAM_13670 RAM_13675 PF02641 Uncharacterized ACR, COG1993 RAM_13680 PF02537 RAM_13680 RAM_13685 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_13690 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RAM_13695 PF04183 IucA / IucC family RAM_13695 PF06276 Ferric iron reductase FhuF-like transporter RAM_13700 PF00120 Glutamine synthetase, catalytic domain RAM_13705 PF01565 FAD binding domain RAM_13705 PF08031 Berberine and berberine like RAM_13710 PF03704 Bacterial transcriptional activator domain RAM_13710 PF13191 AAA ATPase domain RAM_13715 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_13715 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_13730 PF03243 Alkylmercury lyase RAM_13735 PF00152 tRNA synthetases class II (D, K and N) RAM_13735 PF01336 OB-fold nucleic acid binding domain RAM_13735 PF02938 GAD domain RAM_13740 PF04087 RAM_13740 RAM_13750 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_13755 PF12850 Calcineurin-like phosphoesterase superfamily domain RAM_13760 PF00067 Cytochrome P450 RAM_13765 PF00440 Bacterial regulatory proteins, tetR family RAM_13770 PF00004 ATPase family associated with various cellular activities (AAA) RAM_13770 PF12002 MgsA AAA+ ATPase C terminal RAM_13770 PF16193 RAM_13770 RAM_13780 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_13780 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_13785 PF06103 RAM_13785 RAM_13795 PF01411 tRNA synthetases class II (A) RAM_13795 PF02272 DHHA1 domain RAM_13795 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RAM_13800 PF03652 Uncharacterised protein family (UPF0081) RAM_13805 PF02618 YceG-like family RAM_13810 PF08501 Shikimate dehydrogenase substrate binding domain RAM_13815 PF04229 GrpB protein RAM_13815 PF08241 Methyltransferase domain RAM_13820 PF00440 Bacterial regulatory proteins, tetR family RAM_13830 PF12146 Putative lysophospholipase RAM_13835 PF12840 Helix-turn-helix domain RAM_13840 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_13840 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_13845 PF00144 Beta-lactamase RAM_13850 PF00381 PTS HPr component phosphorylation site RAM_13855 PF02378 Phosphotransferase system, EIIC RAM_13860 PF00392 Bacterial regulatory proteins, gntR family RAM_13860 PF07702 UTRA domain RAM_13865 PF00367 phosphotransferase system, EIIB RAM_13870 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RAM_13875 PF00355 Rieske [2Fe-2S] domain RAM_13885 PF04542 Sigma-70 region 2 RAM_13885 PF04545 Sigma-70, region 4 RAM_13890 PF13490 Putative zinc-finger RAM_13895 PF01264 Chorismate synthase RAM_13900 PF01202 Shikimate kinase RAM_13905 PF01761 3-dehydroquinate synthase RAM_13910 PF01220 Dehydroquinase class II RAM_13915 PF13302 Acetyltransferase (GNAT) domain RAM_13915 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_13930 PF00557 Metallopeptidase family M24 RAM_13930 PF01321 Creatinase/Prolidase N-terminal domain RAM_13935 PF01132 Elongation factor P (EF-P) OB domain RAM_13935 PF08207 Elongation factor P (EF-P) KOW-like domain RAM_13935 PF09285 Elongation factor P, C-terminal RAM_13940 PF01029 NusB family RAM_13945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_13950 PF01381 Helix-turn-helix RAM_13955 PF00156 Phosphoribosyl transferase domain RAM_13960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RAM_13960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RAM_13965 PF01979 Amidohydrolase family RAM_13975 PF00117 Glutamine amidotransferase class-I RAM_13975 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RAM_13980 PF13304 AAA domain RAM_13985 PF14103 RAM_13985 RAM_13990 PF02142 MGS-like domain RAM_13990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_13990 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RAM_13995 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RAM_14005 PF00625 Guanylate kinase RAM_14010 PF01192 RNA polymerase Rpb6 RAM_14015 PF02441 Flavoprotein RAM_14015 PF04127 DNA / pantothenate metabolism flavoprotein RAM_14020 PF00438 S-adenosylmethionine synthetase, N-terminal domain RAM_14020 PF02772 S-adenosylmethionine synthetase, central domain RAM_14020 PF02773 S-adenosylmethionine synthetase, C-terminal domain RAM_14035 PF08757 RAM_14035 RAM_14045 PF01019 Gamma-glutamyltranspeptidase RAM_14050 PF00551 Formyl transferase RAM_14050 PF02911 Formyl transferase, C-terminal domain RAM_14055 PF01029 NusB family RAM_14055 PF01189 NOL1/NOP2/sun family RAM_14060 PF02441 Flavoprotein RAM_14065 PF00144 Beta-lactamase RAM_14070 PF00245 Alkaline phosphatase RAM_14075 PF00072 Response regulator receiver domain RAM_14075 PF00196 Bacterial regulatory proteins, luxR family RAM_14080 PF07730 Histidine kinase RAM_14085 PF00834 Ribulose-phosphate 3 epimerase family RAM_14090 PF00677 Lumazine binding domain RAM_14095 PF00925 GTP cyclohydrolase II RAM_14095 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RAM_14100 PF00885 6,7-dimethyl-8-ribityllumazine synthase RAM_14105 PF10756 RAM_14105 RAM_14110 PF03372 Endonuclease/Exonuclease/phosphatase family RAM_14115 PF00089 Trypsin RAM_14120 PF01541 GIY-YIG catalytic domain RAM_14120 PF02151 UvrB/uvrC motif RAM_14120 PF08459 UvrC Helix-hairpin-helix N-terminal RAM_14120 PF14520 Helix-hairpin-helix domain RAM_14125 PF03668 RAM_14125 RAM_14130 PF01933 Uncharacterised protein family UPF0052 RAM_14135 PF02650 WhiA C-terminal HTH domain RAM_14135 PF10298 WhiA N-terminal LAGLIDADG-like domain RAM_14135 PF14527 WhiA LAGLIDADG-like domain RAM_14140 PF00535 Glycosyl transferase family 2 RAM_14145 PF04116 RAM_14145 RAM_14150 PF00440 Bacterial regulatory proteins, tetR family RAM_14165 PF00041 Fibronectin type III domain RAM_14165 PF01161 Phosphatidylethanolamine-binding protein RAM_14165 PF03422 Carbohydrate binding module (family 6) RAM_14165 PF07995 Glucose / Sorbosone dehydrogenase RAM_14170 PF01218 Coproporphyrinogen III oxidase RAM_14175 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_14195 PF00296 Luciferase-like monooxygenase RAM_14200 PF13474 SnoaL-like domain RAM_14205 PF12840 Helix-turn-helix domain RAM_14210 PF01810 RAM_14210 RAM_14215 PF06224 RAM_14215 RAM_14220 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RAM_14220 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RAM_14225 PF00162 Phosphoglycerate kinase RAM_14230 PF00121 Triosephosphate isomerase RAM_14235 PF03840 Preprotein translocase SecG subunit RAM_14240 PF13397 Domain of unknown function (DUF4109) RAM_14245 PF07730 Histidine kinase RAM_14250 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RAM_14255 PF10128 RAM_14255 RAM_14260 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain RAM_14260 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain RAM_14265 PF00342 Phosphoglucose isomerase RAM_14270 PF00923 Transaldolase RAM_14275 PF00456 Transketolase, thiamine diphosphate binding domain RAM_14275 PF02779 Transketolase, pyrimidine binding domain RAM_14275 PF02780 Transketolase, C-terminal domain RAM_14280 PF01040 UbiA prenyltransferase family RAM_14290 PF10824 Protein of unknown function (DUF2580) RAM_14310 PF13245 Part of AAA domain RAM_14310 PF13538 UvrD-like helicase C-terminal domain RAM_14315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RAM_14320 PF00107 Zinc-binding dehydrogenase RAM_14320 PF08240 Alcohol dehydrogenase GroES-like domain RAM_14345 PF00487 RAM_14345 RAM_14350 PF02628 RAM_14350 RAM_14360 PF01061 RAM_14360 RAM_14365 PF00005 ABC transporter RAM_14375 PF13518 Helix-turn-helix domain RAM_14380 PF01458 Uncharacterized protein family (UPF0051) RAM_14385 PF01458 Uncharacterized protein family (UPF0051) RAM_14390 PF00005 ABC transporter RAM_14395 PF00266 Aminotransferase class-V RAM_14400 PF01592 NifU-like N terminal domain RAM_14405 PF01883 Domain of unknown function DUF59 RAM_14410 PF13803 RAM_14410 RAM_14415 PF02694 RAM_14415 RAM_14420 PF10502 Signal peptidase, peptidase S26 RAM_14425 PF03109 RAM_14425 RAM_14430 PF02031 Streptomyces extracellular neutral proteinase (M7) family RAM_14435 PF07730 Histidine kinase RAM_14440 PF00072 Response regulator receiver domain RAM_14440 PF00196 Bacterial regulatory proteins, luxR family RAM_14445 PF08241 Methyltransferase domain RAM_14455 PF00009 Elongation factor Tu GTP binding domain RAM_14455 PF01583 Adenylylsulphate kinase RAM_14460 PF01507 Phosphoadenosine phosphosulfate reductase family RAM_14465 PF13577 SnoaL-like domain RAM_14475 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_14480 PF13469 Sulfotransferase family RAM_14485 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_14490 PF00440 Bacterial regulatory proteins, tetR family RAM_14510 PF00563 EAL domain RAM_14510 PF00990 GGDEF domain RAM_14515 PF12840 Helix-turn-helix domain RAM_14520 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_14525 PF03793 PASTA domain RAM_14530 PF01966 HD domain RAM_14535 PF00082 Subtilase family RAM_14535 PF01483 Proprotein convertase P-domain RAM_14545 PF00005 ABC transporter RAM_14545 PF12848 ABC transporter RAM_14555 PF09594 RAM_14555 RAM_14560 PF00296 Luciferase-like monooxygenase RAM_14565 PF12802 MarR family RAM_14570 PF00005 ABC transporter RAM_14570 PF00664 ABC transporter transmembrane region RAM_14575 PF00144 Beta-lactamase RAM_14580 PF13580 SIS domain RAM_14585 PF12146 Putative lysophospholipase RAM_14590 PF02353 Mycolic acid cyclopropane synthetase RAM_14595 PF03816 Cell envelope-related transcriptional attenuator domain RAM_14600 PF13302 Acetyltransferase (GNAT) domain RAM_14605 PF00578 AhpC/TSA family RAM_14610 PF00563 EAL domain RAM_14610 PF00990 GGDEF domain RAM_14610 PF13426 PAS domain RAM_14615 PF00067 Cytochrome P450 RAM_14620 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_14625 PF00293 NUDIX domain RAM_14630 PF00268 Ribonucleotide reductase, small chain RAM_14635 PF00317 Ribonucleotide reductase, all-alpha domain RAM_14635 PF02867 Ribonucleotide reductase, barrel domain RAM_14635 PF03477 ATP cone domain RAM_14640 PF06314 Acetoacetate decarboxylase (ADC) RAM_14645 PF00378 Enoyl-CoA hydratase/isomerase family RAM_14660 PF08608 Wyosine base formation RAM_14660 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_14665 PF07287 RAM_14665 RAM_14670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_14670 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_14670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_14675 PF01039 Carboxyl transferase domain RAM_14680 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain RAM_14680 PF00364 Biotin-requiring enzyme RAM_14680 PF02785 Biotin carboxylase C-terminal domain RAM_14680 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_14685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_14685 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_14685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_14690 PF00106 short chain dehydrogenase RAM_14695 PF00440 Bacterial regulatory proteins, tetR family RAM_14705 PF03023 RAM_14705 RAM_14715 PF00704 Glycosyl hydrolases family 18 RAM_14720 PF00990 GGDEF domain RAM_14730 PF03171 2OG-Fe(II) oxygenase superfamily RAM_14730 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RAM_14735 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_14740 PF08279 HTH domain RAM_14740 PF13280 RAM_14740 RAM_14745 PF06224 RAM_14745 RAM_14750 PF00440 Bacterial regulatory proteins, tetR family RAM_14755 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_14755 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_14760 PF00440 Bacterial regulatory proteins, tetR family RAM_14765 PF03664 Glycosyl hydrolase family 62 RAM_14765 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_14790 PF04075 Domain of unknown function (DUF385) RAM_14795 PF00440 Bacterial regulatory proteins, tetR family RAM_14800 PF13411 MerR HTH family regulatory protein RAM_14815 PF00400 WD domain, G-beta repeat RAM_14820 PF01494 FAD binding domain RAM_14835 PF01494 FAD binding domain RAM_14840 PF01037 AsnC family RAM_14840 PF13404 AsnC-type helix-turn-helix domain RAM_14855 PF12770 RAM_14855 RAM_14865 PF12697 Alpha/beta hydrolase family RAM_14870 PF00440 Bacterial regulatory proteins, tetR family RAM_14885 PF12802 MarR family RAM_14895 PF00561 alpha/beta hydrolase fold RAM_14895 PF08386 TAP-like protein RAM_14900 PF06271 RAM_14900 RAM_14905 PF00072 Response regulator receiver domain RAM_14905 PF00196 Bacterial regulatory proteins, luxR family RAM_14910 PF07730 Histidine kinase RAM_14920 PF07291 RAM_14920 RAM_14950 PF00082 Subtilase family RAM_14955 PF13377 Periplasmic binding protein-like domain RAM_14960 PF00037 4Fe-4S binding domain RAM_14965 PF00440 Bacterial regulatory proteins, tetR family RAM_14970 PF00440 Bacterial regulatory proteins, tetR family RAM_14975 PF00106 short chain dehydrogenase RAM_14980 PF02566 OsmC-like protein RAM_14985 PF01047 MarR family RAM_14990 PF04978 Protein of unknown function (DUF664) RAM_14995 PF06966 RAM_14995 RAM_15000 PF02353 Mycolic acid cyclopropane synthetase RAM_15005 PF01593 Flavin containing amine oxidoreductase RAM_15010 PF07103 RAM_15010 RAM_15015 PF04542 Sigma-70 region 2 RAM_15015 PF08281 Sigma-70, region 4 RAM_15020 PF10099 RAM_15020 RAM_15025 PF00091 Tubulin/FtsZ family, GTPase domain RAM_15025 PF12327 FtsZ family, C-terminal domain RAM_15030 PF02578 Multi-copper polyphenol oxidoreductase laccase RAM_15035 PF01168 Alanine racemase, N-terminal domain RAM_15040 PF04472 Protein of unknown function (DUF552) RAM_15045 PF02325 RAM_15045 RAM_15050 PF05103 DivIVA protein RAM_15060 PF12840 Helix-turn-helix domain RAM_15065 PF07690 Major Facilitator Superfamily RAM_15070 PF00133 tRNA synthetases class I (I, L, M and V) RAM_15070 PF08264 Anticodon-binding domain of tRNA RAM_15075 PF00905 Penicillin binding protein transpeptidase domain RAM_15075 PF05223 NTF2-like N-terminal transpeptidase domain RAM_15080 PF12840 Helix-turn-helix domain RAM_15085 PF00999 Sodium/hydrogen exchanger family RAM_15085 PF02080 TrkA-C domain RAM_15090 PF00266 Aminotransferase class-V RAM_15100 PF01252 RAM_15100 RAM_15105 PF00849 RNA pseudouridylate synthase RAM_15110 PF13404 AsnC-type helix-turn-helix domain RAM_15115 PF05960 Bacterial protein of unknown function (DUF885) RAM_15120 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_15120 PF09298 Fumarylacetoacetase N-terminal RAM_15125 PF00296 Luciferase-like monooxygenase RAM_15130 PF04203 Sortase family RAM_15135 PF02541 Ppx/GppA phosphatase family RAM_15145 PF03632 Glycosyl hydrolase family 65 central catalytic domain RAM_15145 PF03633 Glycosyl hydrolase family 65, C-terminal domain RAM_15145 PF03636 Glycosyl hydrolase family 65, N-terminal domain RAM_15150 PF13419 Haloacid dehalogenase-like hydrolase RAM_15155 PF12840 Helix-turn-helix domain RAM_15160 PF03061 Thioesterase superfamily RAM_15165 PF12680 SnoaL-like domain RAM_15170 PF12802 MarR family RAM_15180 PF00480 ROK family RAM_15180 PF12802 MarR family RAM_15185 PF04248 Domain of unknown function (DUF427) RAM_15190 PF03055 Retinal pigment epithelial membrane protein RAM_15200 PF03551 Transcriptional regulator PadR-like family RAM_15200 PF10400 Virulence activator alpha C-term RAM_15210 PF04542 Sigma-70 region 2 RAM_15210 PF08281 Sigma-70, region 4 RAM_15215 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_15220 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_15220 PF01799 [2Fe-2S] binding domain RAM_15225 PF13556 PucR C-terminal helix-turn-helix domain RAM_15235 PF00296 Luciferase-like monooxygenase RAM_15240 PF00440 Bacterial regulatory proteins, tetR family RAM_15245 PF00106 short chain dehydrogenase RAM_15250 PF00248 Aldo/keto reductase family RAM_15255 PF00004 ATPase family associated with various cellular activities (AAA) RAM_15260 PF05762 VWA domain containing CoxE-like protein RAM_15265 PF00962 Adenosine/AMP deaminase RAM_15270 PF14013 RAM_15270 RAM_15275 PF00270 DEAD/DEAH box helicase RAM_15275 PF00271 Helicase conserved C-terminal domain RAM_15275 PF00570 HRDC domain RAM_15275 PF09382 RQC domain RAM_15275 PF16124 RAM_15275 RAM_15285 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_15300 PF04978 Protein of unknown function (DUF664) RAM_15305 PF00376 MerR family regulatory protein RAM_15305 PF09278 MerR, DNA binding RAM_15310 PF03358 NADPH-dependent FMN reductase RAM_15320 PF00512 His Kinase A (phospho-acceptor) domain RAM_15320 PF00672 HAMP domain RAM_15320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_15325 PF00072 Response regulator receiver domain RAM_15325 PF00486 Transcriptional regulatory protein, C terminal RAM_15330 PF01569 PAP2 superfamily RAM_15335 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_15345 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_15345 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_15345 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_15350 PF00392 Bacterial regulatory proteins, gntR family RAM_15350 PF07729 FCD domain RAM_15355 PF00561 alpha/beta hydrolase fold RAM_15360 PF02678 Pirin RAM_15360 PF05726 Pirin C-terminal cupin domain RAM_15365 PF01895 PhoU domain RAM_15370 PF00436 Single-strand binding protein family RAM_15380 PF17032 RAM_15380 RAM_15385 PF04075 Domain of unknown function (DUF385) RAM_15390 PF00905 Penicillin binding protein transpeptidase domain RAM_15390 PF00912 Transglycosylase RAM_15395 PF01061 RAM_15395 RAM_15400 PF00005 ABC transporter RAM_15405 PF00005 ABC transporter RAM_15410 PF12802 MarR family RAM_15415 PF12840 Helix-turn-helix domain RAM_15420 PF00107 Zinc-binding dehydrogenase RAM_15420 PF08240 Alcohol dehydrogenase GroES-like domain RAM_15430 PF06983 3-demethylubiquinone-9 3-methyltransferase RAM_15445 PF08445 FR47-like protein RAM_15450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_15455 PF00135 Carboxylesterase family RAM_15460 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_15460 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_15465 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_15465 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_15470 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_15470 PF01799 [2Fe-2S] binding domain RAM_15475 PF00440 Bacterial regulatory proteins, tetR family RAM_15490 PF00171 Aldehyde dehydrogenase family RAM_15495 PF00392 Bacterial regulatory proteins, gntR family RAM_15495 PF07702 UTRA domain RAM_15505 PF00107 Zinc-binding dehydrogenase RAM_15505 PF08240 Alcohol dehydrogenase GroES-like domain RAM_15510 PF07228 Stage II sporulation protein E (SpoIIE) RAM_15515 PF07228 Stage II sporulation protein E (SpoIIE) RAM_15520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_15525 PF01740 STAS domain RAM_15530 PF01740 STAS domain RAM_15530 PF14361 RAM_15530 RAM_15535 PF01047 MarR family RAM_15540 PF07228 Stage II sporulation protein E (SpoIIE) RAM_15550 PF00011 Hsp20/alpha crystallin family RAM_15555 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_15560 PF00115 Cytochrome C and Quinol oxidase polypeptide I RAM_15565 PF00128 Alpha amylase, catalytic domain RAM_15565 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RAM_15570 PF05067 Manganese containing catalase RAM_15580 PF05368 NmrA-like family RAM_15585 PF01638 HxlR-like helix-turn-helix RAM_15595 PF05270 Alpha-L-arabinofuranosidase B (ABFB) RAM_15595 PF09206 Alpha-L-arabinofuranosidase B, catalytic RAM_15605 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_15615 PF00356 Bacterial regulatory proteins, lacI family RAM_15615 PF13377 Periplasmic binding protein-like domain RAM_15620 PF13416 Bacterial extracellular solute-binding protein RAM_15625 PF00528 Binding-protein-dependent transport system inner membrane component RAM_15630 PF00528 Binding-protein-dependent transport system inner membrane component RAM_15635 PF01204 Trehalase RAM_15640 PF01670 Glycosyl hydrolase family 12 RAM_15645 PF00440 Bacterial regulatory proteins, tetR family RAM_15650 PF00248 Aldo/keto reductase family RAM_15655 PF01965 DJ-1/PfpI family RAM_15655 PF12833 Helix-turn-helix domain RAM_15660 PF00248 Aldo/keto reductase family RAM_15665 PF06983 3-demethylubiquinone-9 3-methyltransferase RAM_15670 PF08279 HTH domain RAM_15670 PF13280 RAM_15670 RAM_15675 PF00733 Asparagine synthase RAM_15680 PF00731 AIR carboxylase RAM_15685 PF09861 Domain of unknown function (DUF2088) RAM_15690 PF04909 Amidohydrolase RAM_15695 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_15700 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_15700 PF13378 Enolase C-terminal domain-like RAM_15705 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_15710 PF13407 Periplasmic binding protein domain RAM_15715 PF00005 ABC transporter RAM_15720 PF02653 RAM_15720 RAM_15725 PF00248 Aldo/keto reductase family RAM_15730 PF01120 Alpha-L-fucosidase RAM_15730 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_15730 PF16757 RAM_15730 RAM_15735 PF00392 Bacterial regulatory proteins, gntR family RAM_15735 PF07729 FCD domain RAM_15740 PF12680 SnoaL-like domain RAM_15745 PF00440 Bacterial regulatory proteins, tetR family RAM_15750 PF00356 Bacterial regulatory proteins, lacI family RAM_15750 PF13377 Periplasmic binding protein-like domain RAM_15755 PF13377 Periplasmic binding protein-like domain RAM_15760 PF00501 AMP-binding enzyme RAM_15760 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_15760 PF13193 AMP-binding enzyme C-terminal domain RAM_15765 PF00561 alpha/beta hydrolase fold RAM_15770 PF11774 Lsr2 RAM_15775 PF00501 AMP-binding enzyme RAM_15775 PF00550 Phosphopantetheine attachment site RAM_15775 PF00668 Condensation domain RAM_15775 PF13193 AMP-binding enzyme C-terminal domain RAM_15780 PF03621 MbtH-like protein RAM_15785 PF00144 Beta-lactamase RAM_15790 PF00501 AMP-binding enzyme RAM_15790 PF00550 Phosphopantetheine attachment site RAM_15790 PF00668 Condensation domain RAM_15790 PF13193 AMP-binding enzyme C-terminal domain RAM_15795 PF05977 Transmembrane secretion effector RAM_15800 PF00067 Cytochrome P450 RAM_15810 PF07336 Protein of unknown function (DUF1470) RAM_15810 PF11706 CGNR zinc finger RAM_15820 PF01261 Xylose isomerase-like TIM barrel RAM_15825 PF08240 Alcohol dehydrogenase GroES-like domain RAM_15825 PF13602 Zinc-binding dehydrogenase RAM_15830 PF01966 HD domain RAM_15835 PF03067 Chitin binding domain RAM_15840 PF12706 Beta-lactamase superfamily domain RAM_15845 PF12277 RAM_15845 RAM_15850 PF07332 RAM_15850 RAM_15860 PF13411 MerR HTH family regulatory protein RAM_15865 PF03364 Polyketide cyclase / dehydrase and lipid transport RAM_15870 PF13466 STAS domain RAM_15875 PF04972 BON domain RAM_15875 PF14907 Uncharacterised nucleotidyltransferase RAM_15880 PF00149 Calcineurin-like phosphoesterase RAM_15885 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_15890 PF08240 Alcohol dehydrogenase GroES-like domain RAM_15890 PF13602 Zinc-binding dehydrogenase RAM_15895 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_15900 PF00106 short chain dehydrogenase RAM_15905 PF01872 RibD C-terminal domain RAM_15910 PF00378 Enoyl-CoA hydratase/isomerase family RAM_15915 PF00703 Glycosyl hydrolases family 2 RAM_15915 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_15915 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_15915 PF16355 RAM_15915 RAM_15925 PF00501 AMP-binding enzyme RAM_15930 PF00501 AMP-binding enzyme RAM_15930 PF13193 AMP-binding enzyme C-terminal domain RAM_15935 PF02126 Phosphotriesterase family RAM_15940 PF00440 Bacterial regulatory proteins, tetR family RAM_15945 PF00561 alpha/beta hydrolase fold RAM_15955 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_15955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_15960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_15960 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_15960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_15965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_15965 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_15965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_15970 PF01636 Phosphotransferase enzyme family RAM_15975 PF01575 MaoC like domain RAM_15980 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_15985 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_15985 PF13378 Enolase C-terminal domain-like RAM_15990 PF00392 Bacterial regulatory proteins, gntR family RAM_15990 PF07729 FCD domain RAM_15995 PF01547 Bacterial extracellular solute-binding protein RAM_16000 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16005 PF03737 Demethylmenaquinone methyltransferase RAM_16010 PF00069 Protein kinase domain RAM_16015 PF00486 Transcriptional regulatory protein, C terminal RAM_16015 PF03704 Bacterial transcriptional activator domain RAM_16020 PF01040 UbiA prenyltransferase family RAM_16025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_16025 PF07730 Histidine kinase RAM_16030 PF00072 Response regulator receiver domain RAM_16030 PF00196 Bacterial regulatory proteins, luxR family RAM_16050 PF07690 Major Facilitator Superfamily RAM_16060 PF00512 His Kinase A (phospho-acceptor) domain RAM_16060 PF00672 HAMP domain RAM_16060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_16065 PF00072 Response regulator receiver domain RAM_16065 PF00486 Transcriptional regulatory protein, C terminal RAM_16075 PF12730 RAM_16075 RAM_16080 PF00005 ABC transporter RAM_16095 PF13460 NADH(P)-binding RAM_16100 PF00440 Bacterial regulatory proteins, tetR family RAM_16105 PF03551 Transcriptional regulator PadR-like family RAM_16110 PF00005 ABC transporter RAM_16125 PF00533 BRCA1 C Terminus (BRCT) domain RAM_16125 PF01653 NAD-dependent DNA ligase adenylation domain RAM_16125 PF03120 NAD-dependent DNA ligase OB-fold domain RAM_16125 PF12826 Helix-hairpin-helix motif RAM_16130 PF00296 Luciferase-like monooxygenase RAM_16135 PF00578 AhpC/TSA family RAM_16140 PF04542 Sigma-70 region 2 RAM_16140 PF08281 Sigma-70, region 4 RAM_16145 PF03259 Roadblock/LC7 domain RAM_16160 PF06441 Epoxide hydrolase N terminus RAM_16165 PF08279 HTH domain RAM_16165 PF13280 RAM_16165 RAM_16170 PF07690 Major Facilitator Superfamily RAM_16175 PF13714 Phosphoenolpyruvate phosphomutase RAM_16180 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_16185 PF04542 Sigma-70 region 2 RAM_16185 PF08281 Sigma-70, region 4 RAM_16205 PF03741 RAM_16205 RAM_16215 PF00128 Alpha amylase, catalytic domain RAM_16220 PF10022 RAM_16220 RAM_16225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_16225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_16230 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16235 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16240 PF13416 Bacterial extracellular solute-binding protein RAM_16245 PF07940 Heparinase II/III-like protein RAM_16250 PF08220 DeoR-like helix-turn-helix domain RAM_16250 PF13377 Periplasmic binding protein-like domain RAM_16255 PF00069 Protein kinase domain RAM_16260 PF00356 Bacterial regulatory proteins, lacI family RAM_16260 PF13377 Periplasmic binding protein-like domain RAM_16265 PF00069 Protein kinase domain RAM_16265 PF00553 Cellulose binding domain RAM_16270 PF00069 Protein kinase domain RAM_16270 PF00553 Cellulose binding domain RAM_16275 PF01740 STAS domain RAM_16280 PF03916 RAM_16280 RAM_16285 PF13247 4Fe-4S dicluster domain RAM_16290 PF00384 Molybdopterin oxidoreductase RAM_16290 PF01568 Molydopterin dinucleotide binding domain RAM_16295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_16300 PF00083 Sugar (and other) transporter RAM_16305 PF13466 STAS domain RAM_16315 PF04978 Protein of unknown function (DUF664) RAM_16320 PF13649 Methyltransferase domain RAM_16325 PF07883 Cupin domain RAM_16325 PF13560 Helix-turn-helix domain RAM_16335 PF13358 DDE superfamily endonuclease RAM_16335 PF13565 RAM_16335 RAM_16340 PF00144 Beta-lactamase RAM_16345 PF00122 E1-E2 ATPase RAM_16345 PF00689 Cation transporting ATPase, C-terminus RAM_16345 PF00702 haloacid dehalogenase-like hydrolase RAM_16350 PF06803 RAM_16350 RAM_16355 PF00296 Luciferase-like monooxygenase RAM_16360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_16360 PF03466 LysR substrate binding domain RAM_16370 PF00890 FAD binding domain RAM_16370 PF02910 Fumarate reductase flavoprotein C-term RAM_16375 PF13085 2Fe-2S iron-sulfur cluster binding domain RAM_16375 PF13183 4Fe-4S dicluster domain RAM_16380 PF12840 Helix-turn-helix domain RAM_16385 PF07690 Major Facilitator Superfamily RAM_16405 PF01047 MarR family RAM_16410 PF04185 Phosphoesterase family RAM_16410 PF05506 RAM_16410 RAM_16415 PF07561 RAM_16415 RAM_16420 PF00891 O-methyltransferase RAM_16430 PF01381 Helix-turn-helix RAM_16430 PF07883 Cupin domain RAM_16435 PF01266 FAD dependent oxidoreductase RAM_16440 PF13510 2Fe-2S iron-sulfur cluster binding domain RAM_16445 PF04324 BFD-like [2Fe-2S] binding domain RAM_16445 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_16450 PF00701 Dihydrodipicolinate synthetase family RAM_16455 PF05544 Proline racemase RAM_16465 PF00027 Cyclic nucleotide-binding domain RAM_16475 PF00027 Cyclic nucleotide-binding domain RAM_16485 PF08241 Methyltransferase domain RAM_16490 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16495 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16500 PF13416 Bacterial extracellular solute-binding protein RAM_16505 PF11350 RAM_16505 RAM_16510 PF01522 Polysaccharide deacetylase RAM_16545 PF01594 RAM_16545 RAM_16550 PF04616 Glycosyl hydrolases family 43 RAM_16560 PF01068 ATP dependent DNA ligase domain RAM_16560 PF04679 ATP dependent DNA ligase C terminal region RAM_16565 PF00440 Bacterial regulatory proteins, tetR family RAM_16570 PF12697 Alpha/beta hydrolase family RAM_16575 PF08241 Methyltransferase domain RAM_16580 PF13419 Haloacid dehalogenase-like hydrolase RAM_16590 PF14325 RAM_16590 RAM_16610 PF09954 RAM_16610 RAM_16615 PF04909 Amidohydrolase RAM_16620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_16620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_16625 PF00501 AMP-binding enzyme RAM_16625 PF13193 AMP-binding enzyme C-terminal domain RAM_16625 PF16177 RAM_16625 RAM_16630 PF00378 Enoyl-CoA hydratase/isomerase family RAM_16635 PF00501 AMP-binding enzyme RAM_16635 PF13193 AMP-binding enzyme C-terminal domain RAM_16640 PF00107 Zinc-binding dehydrogenase RAM_16640 PF08240 Alcohol dehydrogenase GroES-like domain RAM_16645 PF00171 Aldehyde dehydrogenase family RAM_16655 PF13466 STAS domain RAM_16660 PF01370 NAD dependent epimerase/dehydratase family RAM_16665 PF00440 Bacterial regulatory proteins, tetR family RAM_16680 PF01566 RAM_16680 RAM_16690 PF01569 PAP2 superfamily RAM_16695 PF13581 Histidine kinase-like ATPase domain RAM_16695 PF14417 RAM_16695 RAM_16705 PF00501 AMP-binding enzyme RAM_16705 PF00550 Phosphopantetheine attachment site RAM_16705 PF13193 AMP-binding enzyme C-terminal domain RAM_16710 PF00553 Cellulose binding domain RAM_16710 PF04616 Glycosyl hydrolases family 43 RAM_16715 PF03422 Carbohydrate binding module (family 6) RAM_16715 PF04616 Glycosyl hydrolases family 43 RAM_16720 PF00331 Glycosyl hydrolase family 10 RAM_16720 PF00553 Cellulose binding domain RAM_16725 PF00553 Cellulose binding domain RAM_16725 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_16730 PF01670 Glycosyl hydrolase family 12 RAM_16735 PF00652 Ricin-type beta-trefoil lectin domain RAM_16735 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_16740 PF01120 Alpha-L-fucosidase RAM_16740 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_16745 PF00652 Ricin-type beta-trefoil lectin domain RAM_16745 PF09206 Alpha-L-arabinofuranosidase B, catalytic RAM_16750 PF00652 Ricin-type beta-trefoil lectin domain RAM_16750 PF13229 Right handed beta helix region RAM_16760 PF00392 Bacterial regulatory proteins, gntR family RAM_16760 PF07729 FCD domain RAM_16765 PF02230 Phospholipase/Carboxylesterase RAM_16765 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_16770 PF00356 Bacterial regulatory proteins, lacI family RAM_16770 PF13377 Periplasmic binding protein-like domain RAM_16775 PF00652 Ricin-type beta-trefoil lectin domain RAM_16775 PF09206 Alpha-L-arabinofuranosidase B, catalytic RAM_16780 PF01229 Glycosyl hydrolases family 39 RAM_16780 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_16785 PF09995 RAM_16785 RAM_16790 PF00440 Bacterial regulatory proteins, tetR family RAM_16795 PF04542 Sigma-70 region 2 RAM_16795 PF08281 Sigma-70, region 4 RAM_16810 PF00106 short chain dehydrogenase RAM_16815 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_16815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_16815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_16820 PF12802 MarR family RAM_16825 PF06772 RAM_16825 RAM_16830 PF00672 HAMP domain RAM_16830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_16830 PF03259 Roadblock/LC7 domain RAM_16835 PF05331 RAM_16835 RAM_16840 PF03707 RAM_16840 RAM_16850 PF00392 Bacterial regulatory proteins, gntR family RAM_16850 PF07702 UTRA domain RAM_16855 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_16855 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_16860 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16865 PF00528 Binding-protein-dependent transport system inner membrane component RAM_16870 PF01547 Bacterial extracellular solute-binding protein RAM_16880 PF00291 Pyridoxal-phosphate dependent enzyme RAM_16885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_16890 PF01022 Bacterial regulatory protein, arsR family RAM_16890 PF01451 Low molecular weight phosphotyrosine protein phosphatase RAM_16895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_16895 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_16895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_16900 PF00196 Bacterial regulatory proteins, luxR family RAM_16905 PF09990 RAM_16905 RAM_16910 PF07690 Major Facilitator Superfamily RAM_16915 PF00990 GGDEF domain RAM_16920 PF00356 Bacterial regulatory proteins, lacI family RAM_16920 PF13377 Periplasmic binding protein-like domain RAM_16925 PF05721 Phytanoyl-CoA dioxygenase (PhyH) RAM_16950 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_16955 PF00440 Bacterial regulatory proteins, tetR family RAM_16960 PF00089 Trypsin RAM_16965 PF00440 Bacterial regulatory proteins, tetR family RAM_16965 PF16859 RAM_16965 RAM_16975 PF04542 Sigma-70 region 2 RAM_16975 PF08281 Sigma-70, region 4 RAM_16980 PF01047 MarR family RAM_16985 PF00925 GTP cyclohydrolase II RAM_17000 PF04616 Glycosyl hydrolases family 43 RAM_17000 PF13385 Concanavalin A-like lectin/glucanases superfamily RAM_17010 PF00440 Bacterial regulatory proteins, tetR family RAM_17010 PF16859 RAM_17010 RAM_17020 PF00561 alpha/beta hydrolase fold RAM_17030 PF07859 alpha/beta hydrolase fold RAM_17035 PF00296 Luciferase-like monooxygenase RAM_17050 PF04607 Region found in RelA / SpoT proteins RAM_17055 PF00440 Bacterial regulatory proteins, tetR family RAM_17055 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_17060 PF00067 Cytochrome P450 RAM_17065 PF06197 RAM_17065 RAM_17070 PF00246 Zinc carboxypeptidase RAM_17075 PF01810 RAM_17075 RAM_17080 PF00226 DnaJ domain RAM_17085 PF00501 AMP-binding enzyme RAM_17085 PF13193 AMP-binding enzyme C-terminal domain RAM_17090 PF04978 Protein of unknown function (DUF664) RAM_17095 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_17100 PF01263 Aldose 1-epimerase RAM_17105 PF13556 PucR C-terminal helix-turn-helix domain RAM_17110 PF03176 MMPL family RAM_17115 PF07690 Major Facilitator Superfamily RAM_17120 PF00501 AMP-binding enzyme RAM_17125 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_17125 PF00550 Phosphopantetheine attachment site RAM_17125 PF00698 Acyl transferase domain RAM_17125 PF00975 Thioesterase domain RAM_17125 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_17125 PF08659 KR domain RAM_17125 PF14765 Polyketide synthase dehydratase RAM_17125 PF16197 RAM_17125 RAM_17130 PF01039 Carboxyl transferase domain RAM_17135 PF00756 Putative esterase RAM_17140 PF03583 Secretory lipase RAM_17145 PF03583 Secretory lipase RAM_17160 PF00440 Bacterial regulatory proteins, tetR family RAM_17165 PF13556 PucR C-terminal helix-turn-helix domain RAM_17170 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_17175 PF00106 short chain dehydrogenase RAM_17180 PF00378 Enoyl-CoA hydratase/isomerase family RAM_17185 PF01144 Coenzyme A transferase RAM_17195 PF03060 Nitronate monooxygenase RAM_17200 PF00296 Luciferase-like monooxygenase RAM_17205 PF00108 Thiolase, N-terminal domain RAM_17205 PF02803 Thiolase, C-terminal domain RAM_17210 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_17215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_17215 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_17215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_17220 PF00501 AMP-binding enzyme RAM_17220 PF13193 AMP-binding enzyme C-terminal domain RAM_17225 PF00378 Enoyl-CoA hydratase/isomerase family RAM_17230 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_17230 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_17230 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_17235 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_17235 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_17240 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_17240 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_17245 PF04542 Sigma-70 region 2 RAM_17245 PF13490 Putative zinc-finger RAM_17250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_17255 PF00392 Bacterial regulatory proteins, gntR family RAM_17255 PF07729 FCD domain RAM_17260 PF01223 DNA/RNA non-specific endonuclease RAM_17260 PF13365 Trypsin-like peptidase domain RAM_17265 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_17265 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_17270 PF00440 Bacterial regulatory proteins, tetR family RAM_17275 PF08240 Alcohol dehydrogenase GroES-like domain RAM_17280 PF12697 Alpha/beta hydrolase family RAM_17285 PF00211 Adenylate and Guanylate cyclase catalytic domain RAM_17285 PF00672 HAMP domain RAM_17290 PF11583 P-aminobenzoate N-oxygenase AurF RAM_17295 PF00037 4Fe-4S binding domain RAM_17295 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_17300 PF00440 Bacterial regulatory proteins, tetR family RAM_17305 PF04072 Leucine carboxyl methyltransferase RAM_17315 PF01402 Ribbon-helix-helix protein, copG family RAM_17320 PF00652 Ricin-type beta-trefoil lectin domain RAM_17320 PF16499 RAM_17320 RAM_17325 PF00356 Bacterial regulatory proteins, lacI family RAM_17325 PF13377 Periplasmic binding protein-like domain RAM_17330 PF13416 Bacterial extracellular solute-binding protein RAM_17335 PF00528 Binding-protein-dependent transport system inner membrane component RAM_17340 PF00528 Binding-protein-dependent transport system inner membrane component RAM_17345 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) RAM_17350 PF00652 Ricin-type beta-trefoil lectin domain RAM_17355 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_17360 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) RAM_17365 PF02031 Streptomyces extracellular neutral proteinase (M7) family RAM_17370 PF00440 Bacterial regulatory proteins, tetR family RAM_17375 PF07690 Major Facilitator Superfamily RAM_17390 PF00480 ROK family RAM_17390 PF12802 MarR family RAM_17395 PF13520 Amino acid permease RAM_17400 PF00703 Glycosyl hydrolases family 2 RAM_17405 PF00480 ROK family RAM_17410 PF05977 Transmembrane secretion effector RAM_17415 PF00356 Bacterial regulatory proteins, lacI family RAM_17415 PF13377 Periplasmic binding protein-like domain RAM_17420 PF12222 RAM_17420 RAM_17425 PF13649 Methyltransferase domain RAM_17430 PF00067 Cytochrome P450 RAM_17435 PF06626 RAM_17435 RAM_17440 PF13532 2OG-Fe(II) oxygenase superfamily RAM_17445 PF01872 RibD C-terminal domain RAM_17455 PF06736 RAM_17455 RAM_17460 PF00849 RNA pseudouridylate synthase RAM_17465 PF17240 RAM_17465 RAM_17470 PF01047 MarR family RAM_17475 PF00296 Luciferase-like monooxygenase RAM_17485 PF04226 RAM_17485 RAM_17490 PF00753 Metallo-beta-lactamase superfamily RAM_17495 PF13560 Helix-turn-helix domain RAM_17505 PF03551 Transcriptional regulator PadR-like family RAM_17505 PF10400 Virulence activator alpha C-term RAM_17510 PF12680 SnoaL-like domain RAM_17515 PF00775 Dioxygenase RAM_17520 PF13460 NADH(P)-binding RAM_17525 PF00501 AMP-binding enzyme RAM_17525 PF13193 AMP-binding enzyme C-terminal domain RAM_17530 PF01975 Survival protein SurE RAM_17540 PF04542 Sigma-70 region 2 RAM_17540 PF08281 Sigma-70, region 4 RAM_17545 PF07995 Glucose / Sorbosone dehydrogenase RAM_17550 PF08240 Alcohol dehydrogenase GroES-like domain RAM_17555 PF13460 NADH(P)-binding RAM_17575 PF00440 Bacterial regulatory proteins, tetR family RAM_17580 PF07969 Amidohydrolase family RAM_17585 PF01546 Peptidase family M20/M25/M40 RAM_17585 PF07687 Peptidase dimerisation domain RAM_17595 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_17595 PF13378 Enolase C-terminal domain-like RAM_17600 PF00144 Beta-lactamase RAM_17605 PF13354 Beta-lactamase enzyme family RAM_17610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_17615 PF00528 Binding-protein-dependent transport system inner membrane component RAM_17620 PF00005 ABC transporter RAM_17620 PF00528 Binding-protein-dependent transport system inner membrane component RAM_17620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_17625 PF00005 ABC transporter RAM_17625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_17630 PF00144 Beta-lactamase RAM_17630 PF00326 Prolyl oligopeptidase family RAM_17630 PF07676 WD40-like Beta Propeller Repeat RAM_17635 PF07690 Major Facilitator Superfamily RAM_17640 PF00440 Bacterial regulatory proteins, tetR family RAM_17645 PF08241 Methyltransferase domain RAM_17650 PF14117 RAM_17650 RAM_17655 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_17660 PF07690 Major Facilitator Superfamily RAM_17665 PF00067 Cytochrome P450 RAM_17670 PF00717 Peptidase S24-like RAM_17670 PF01726 LexA DNA binding domain RAM_17675 PF03067 Chitin binding domain RAM_17680 PF13560 Helix-turn-helix domain RAM_17685 PF08240 Alcohol dehydrogenase GroES-like domain RAM_17685 PF13602 Zinc-binding dehydrogenase RAM_17690 PF03422 Carbohydrate binding module (family 6) RAM_17690 PF16483 RAM_17690 RAM_17700 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_17705 PF01593 Flavin containing amine oxidoreductase RAM_17710 PF00294 pfkB family carbohydrate kinase RAM_17715 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_17720 PF00893 Small Multidrug Resistance protein RAM_17725 PF00893 Small Multidrug Resistance protein RAM_17730 PF00106 short chain dehydrogenase RAM_17735 PF03773 RAM_17735 RAM_17745 PF13379 NMT1-like family RAM_17750 PF00196 Bacterial regulatory proteins, luxR family RAM_17750 PF13191 AAA ATPase domain RAM_17760 PF00106 short chain dehydrogenase RAM_17765 PF00440 Bacterial regulatory proteins, tetR family RAM_17770 PF00501 AMP-binding enzyme RAM_17770 PF13193 AMP-binding enzyme C-terminal domain RAM_17775 PF00296 Luciferase-like monooxygenase RAM_17780 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_17785 PF00550 Phosphopantetheine attachment site RAM_17790 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_17790 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_17795 PF00561 alpha/beta hydrolase fold RAM_17800 PF00392 Bacterial regulatory proteins, gntR family RAM_17800 PF07729 FCD domain RAM_17805 PF01161 Phosphatidylethanolamine-binding protein RAM_17805 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_17815 PF12721 RAM_17815 RAM_17820 PF00107 Zinc-binding dehydrogenase RAM_17820 PF08240 Alcohol dehydrogenase GroES-like domain RAM_17825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_17825 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_17830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_17835 PF00196 Bacterial regulatory proteins, luxR family RAM_17835 PF13191 AAA ATPase domain RAM_17840 PF00403 Heavy-metal-associated domain RAM_17850 PF00122 E1-E2 ATPase RAM_17850 PF00403 Heavy-metal-associated domain RAM_17850 PF00702 haloacid dehalogenase-like hydrolase RAM_17855 PF01435 Peptidase family M48 RAM_17860 PF03965 Penicillinase repressor RAM_17865 PF03713 Domain of unknown function (DUF305) RAM_17885 PF03358 NADPH-dependent FMN reductase RAM_17890 PF00999 Sodium/hydrogen exchanger family RAM_17895 PF04542 Sigma-70 region 2 RAM_17895 PF08281 Sigma-70, region 4 RAM_17900 PF13490 Putative zinc-finger RAM_17905 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_17915 PF13602 Zinc-binding dehydrogenase RAM_17920 PF01370 NAD dependent epimerase/dehydratase family RAM_17920 PF08338 Domain of unknown function (DUF1731) RAM_17925 PF00176 SNF2 family N-terminal domain RAM_17925 PF00271 Helicase conserved C-terminal domain RAM_17925 PF12419 RAM_17925 RAM_17935 PF05729 NACHT domain RAM_17940 PF13245 Part of AAA domain RAM_17940 PF13361 UvrD-like helicase C-terminal domain RAM_17945 PF12951 RAM_17945 RAM_17950 PF05270 Alpha-L-arabinofuranosidase B (ABFB) RAM_17950 PF09206 Alpha-L-arabinofuranosidase B, catalytic RAM_17955 PF05270 Alpha-L-arabinofuranosidase B (ABFB) RAM_17955 PF09206 Alpha-L-arabinofuranosidase B, catalytic RAM_17960 PF05977 Transmembrane secretion effector RAM_17965 PF01494 FAD binding domain RAM_17975 PF01594 RAM_17975 RAM_17990 PF13515 RAM_17990 RAM_17995 PF01645 Conserved region in glutamate synthase RAM_18000 PF00072 Response regulator receiver domain RAM_18000 PF00486 Transcriptional regulatory protein, C terminal RAM_18005 PF00512 His Kinase A (phospho-acceptor) domain RAM_18005 PF00672 HAMP domain RAM_18005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_18015 PF01471 Putative peptidoglycan binding domain RAM_18020 PF00005 ABC transporter RAM_18025 PF02687 RAM_18025 RAM_18025 PF12704 MacB-like periplasmic core domain RAM_18030 PF00107 Zinc-binding dehydrogenase RAM_18035 PF11706 CGNR zinc finger RAM_18040 PF07690 Major Facilitator Superfamily RAM_18045 PF00561 alpha/beta hydrolase fold RAM_18050 PF00440 Bacterial regulatory proteins, tetR family RAM_18055 PF07730 Histidine kinase RAM_18060 PF00072 Response regulator receiver domain RAM_18060 PF00196 Bacterial regulatory proteins, luxR family RAM_18065 PF00144 Beta-lactamase RAM_18070 PF02515 CoA-transferase family III RAM_18075 PF07287 RAM_18075 RAM_18080 PF00440 Bacterial regulatory proteins, tetR family RAM_18085 PF00072 Response regulator receiver domain RAM_18085 PF07730 Histidine kinase RAM_18095 PF13560 Helix-turn-helix domain RAM_18100 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_18105 PF00545 ribonuclease RAM_18110 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_18115 PF12833 Helix-turn-helix domain RAM_18120 PF00440 Bacterial regulatory proteins, tetR family RAM_18120 PF16925 RAM_18120 RAM_18125 PF00106 short chain dehydrogenase RAM_18130 PF00106 short chain dehydrogenase RAM_18135 PF13560 Helix-turn-helix domain RAM_18155 PF12770 RAM_18155 RAM_18165 PF12770 RAM_18165 RAM_18165 PF13289 RAM_18165 RAM_18175 PF13460 NADH(P)-binding RAM_18180 PF13539 D-alanyl-D-alanine carboxypeptidase RAM_18185 PF00067 Cytochrome P450 RAM_18190 PF12802 MarR family RAM_18195 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) RAM_18195 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_18205 PF00072 Response regulator receiver domain RAM_18205 PF00486 Transcriptional regulatory protein, C terminal RAM_18210 PF00512 His Kinase A (phospho-acceptor) domain RAM_18210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_18215 PF07394 RAM_18215 RAM_18220 PF08811 RAM_18220 RAM_18230 PF01522 Polysaccharide deacetylase RAM_18250 PF08448 PAS fold RAM_18255 PF00989 PAS fold RAM_18255 PF01739 CheR methyltransferase, SAM binding domain RAM_18255 PF03705 CheR methyltransferase, all-alpha domain RAM_18260 PF01339 CheB methylesterase RAM_18265 PF01494 FAD binding domain RAM_18270 PF00440 Bacterial regulatory proteins, tetR family RAM_18275 PF13424 Tetratricopeptide repeat RAM_18285 PF13602 Zinc-binding dehydrogenase RAM_18290 PF00440 Bacterial regulatory proteins, tetR family RAM_18290 PF16859 RAM_18290 RAM_18295 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RAM_18295 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RAM_18300 PF00484 Carbonic anhydrase RAM_18310 PF00440 Bacterial regulatory proteins, tetR family RAM_18310 PF13305 WHG domain RAM_18315 PF00440 Bacterial regulatory proteins, tetR family RAM_18320 PF07859 alpha/beta hydrolase fold RAM_18325 PF07883 Cupin domain RAM_18330 PF13474 SnoaL-like domain RAM_18335 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_18340 PF01740 STAS domain RAM_18345 PF00440 Bacterial regulatory proteins, tetR family RAM_18350 PF00106 short chain dehydrogenase RAM_18355 PF00400 WD domain, G-beta repeat RAM_18370 PF13411 MerR HTH family regulatory protein RAM_18380 PF04542 Sigma-70 region 2 RAM_18380 PF08281 Sigma-70, region 4 RAM_18380 PF12680 SnoaL-like domain RAM_18390 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_18400 PF01183 Glycosyl hydrolases family 25 RAM_18400 PF01471 Putative peptidoglycan binding domain RAM_18405 PF01471 Putative peptidoglycan binding domain RAM_18405 PF08291 Peptidase M15 RAM_18410 PF01471 Putative peptidoglycan binding domain RAM_18410 PF13560 Helix-turn-helix domain RAM_18420 PF00486 Transcriptional regulatory protein, C terminal RAM_18420 PF00931 NB-ARC domain RAM_18420 PF03704 Bacterial transcriptional activator domain RAM_18420 PF13424 Tetratricopeptide repeat RAM_18425 PF00196 Bacterial regulatory proteins, luxR family RAM_18425 PF13191 AAA ATPase domain RAM_18430 PF01648 4'-phosphopantetheinyl transferase superfamily RAM_18435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_18435 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_18440 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_18450 PF00550 Phosphopantetheine attachment site RAM_18455 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_18455 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_18460 PF02655 ATP-grasp domain RAM_18465 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_18470 PF00668 Condensation domain RAM_18475 PF00005 ABC transporter RAM_18480 PF01061 RAM_18480 RAM_18485 PF02543 Carbamoyltransferase RAM_18485 PF16861 RAM_18485 RAM_18505 PF02274 Amidinotransferase RAM_18510 PF04199 Putative cyclase RAM_18520 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_18520 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_18525 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_18525 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_18530 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_18530 PF01799 [2Fe-2S] binding domain RAM_18535 PF00440 Bacterial regulatory proteins, tetR family RAM_18540 PF08305 NPCBM/NEW2 domain RAM_18540 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase RAM_18540 PF16499 RAM_18540 RAM_18540 PF17450 RAM_18540 RAM_18575 PF04075 Domain of unknown function (DUF385) RAM_18585 PF00440 Bacterial regulatory proteins, tetR family RAM_18600 PF12730 RAM_18600 RAM_18605 PF00144 Beta-lactamase RAM_18610 PF13474 SnoaL-like domain RAM_18615 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_18620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_18630 PF04542 Sigma-70 region 2 RAM_18630 PF08281 Sigma-70, region 4 RAM_18640 PF17132 RAM_18640 RAM_18645 PF05592 Bacterial alpha-L-rhamnosidase RAM_18645 PF08531 Alpha-L-rhamnosidase N-terminal domain RAM_18645 PF17389 RAM_18645 RAM_18645 PF17390 RAM_18645 RAM_18650 PF00440 Bacterial regulatory proteins, tetR family RAM_18655 PF00440 Bacterial regulatory proteins, tetR family RAM_18655 PF13305 WHG domain RAM_18660 PF00107 Zinc-binding dehydrogenase RAM_18660 PF08240 Alcohol dehydrogenase GroES-like domain RAM_18665 PF06197 RAM_18665 RAM_18670 PF12680 SnoaL-like domain RAM_18675 PF00561 alpha/beta hydrolase fold RAM_18690 PF00561 alpha/beta hydrolase fold RAM_18695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_18695 PF03466 LysR substrate binding domain RAM_18710 PF07745 Glycosyl hydrolase family 53 RAM_18715 PF15979 RAM_18715 RAM_18720 PF01522 Polysaccharide deacetylase RAM_18725 PF04616 Glycosyl hydrolases family 43 RAM_18730 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_18735 PF00652 Ricin-type beta-trefoil lectin domain RAM_18735 PF01738 Dienelactone hydrolase family RAM_18740 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_18740 PF00501 AMP-binding enzyme RAM_18740 PF00550 Phosphopantetheine attachment site RAM_18740 PF00668 Condensation domain RAM_18740 PF00698 Acyl transferase domain RAM_18740 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_18740 PF07690 Major Facilitator Superfamily RAM_18740 PF12697 Alpha/beta hydrolase family RAM_18740 PF13193 AMP-binding enzyme C-terminal domain RAM_18740 PF16197 RAM_18740 RAM_18745 PF00501 AMP-binding enzyme RAM_18745 PF13193 AMP-binding enzyme C-terminal domain RAM_18750 PF00550 Phosphopantetheine attachment site RAM_18755 PF00550 Phosphopantetheine attachment site RAM_18755 PF00668 Condensation domain RAM_18760 PF00501 AMP-binding enzyme RAM_18760 PF00550 Phosphopantetheine attachment site RAM_18765 PF00501 AMP-binding enzyme RAM_18775 PF02424 ApbE family RAM_18780 PF04205 FMN-binding domain RAM_18785 PF00175 Oxidoreductase NAD-binding domain RAM_18785 PF01794 RAM_18785 RAM_18790 PF00512 His Kinase A (phospho-acceptor) domain RAM_18790 PF00672 HAMP domain RAM_18790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_18795 PF00072 Response regulator receiver domain RAM_18795 PF00486 Transcriptional regulatory protein, C terminal RAM_18805 PF00072 Response regulator receiver domain RAM_18805 PF00196 Bacterial regulatory proteins, luxR family RAM_18810 PF07730 Histidine kinase RAM_18825 PF01494 FAD binding domain RAM_18830 PF13649 Methyltransferase domain RAM_18840 PF00872 RAM_18840 RAM_18860 PF00440 Bacterial regulatory proteins, tetR family RAM_18860 PF14246 AefR-like transcriptional repressor, C-terminal region RAM_18865 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_18870 PF01037 AsnC family RAM_18870 PF13412 Winged helix-turn-helix DNA-binding RAM_18875 PF00892 EamA-like transporter family RAM_18880 PF08240 Alcohol dehydrogenase GroES-like domain RAM_18880 PF13602 Zinc-binding dehydrogenase RAM_18885 PF07859 alpha/beta hydrolase fold RAM_18890 PF05368 NmrA-like family RAM_18895 PF12802 MarR family RAM_18900 PF00703 Glycosyl hydrolases family 2 RAM_18900 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_18900 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_18900 PF02929 Beta galactosidase small chain RAM_18905 PF00652 Ricin-type beta-trefoil lectin domain RAM_18905 PF07995 Glucose / Sorbosone dehydrogenase RAM_18915 PF07883 Cupin domain RAM_18920 PF02627 Carboxymuconolactone decarboxylase family RAM_18925 PF07690 Major Facilitator Superfamily RAM_18930 PF13560 Helix-turn-helix domain RAM_18935 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_18935 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_18940 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_18945 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_18950 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_18950 PF01799 [2Fe-2S] binding domain RAM_18955 PF07690 Major Facilitator Superfamily RAM_18960 PF00107 Zinc-binding dehydrogenase RAM_18960 PF08240 Alcohol dehydrogenase GroES-like domain RAM_18965 PF13560 Helix-turn-helix domain RAM_18970 PF13560 Helix-turn-helix domain RAM_18975 PF00106 short chain dehydrogenase RAM_18980 PF04126 Cyclophilin-like RAM_18985 PF13672 Protein phosphatase 2C RAM_19000 PF01872 RibD C-terminal domain RAM_19015 PF01183 Glycosyl hydrolases family 25 RAM_19025 PF00571 CBS domain RAM_19030 PF03600 Citrate transporter RAM_19030 PF13305 WHG domain RAM_19035 PF10503 Esterase PHB depolymerase RAM_19040 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) RAM_19045 PF00480 ROK family RAM_19050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_19055 PF00528 Binding-protein-dependent transport system inner membrane component RAM_19060 PF00005 ABC transporter RAM_19060 PF00528 Binding-protein-dependent transport system inner membrane component RAM_19065 PF00005 ABC transporter RAM_19065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_19070 PF00703 Glycosyl hydrolases family 2 RAM_19075 PF13377 Periplasmic binding protein-like domain RAM_19080 PF00652 Ricin-type beta-trefoil lectin domain RAM_19080 PF02156 Glycosyl hydrolase family 26 RAM_19085 PF00652 Ricin-type beta-trefoil lectin domain RAM_19085 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_19090 PF00480 ROK family RAM_19095 PF02065 Melibiase RAM_19095 PF16874 RAM_19095 RAM_19095 PF16875 RAM_19095 RAM_19100 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_19105 PF12833 Helix-turn-helix domain RAM_19105 PF12852 Cupin RAM_19110 PF00440 Bacterial regulatory proteins, tetR family RAM_19115 PF01494 FAD binding domain RAM_19130 PF13376 RAM_19130 RAM_19140 PF01569 PAP2 superfamily RAM_19145 PF04542 Sigma-70 region 2 RAM_19145 PF08281 Sigma-70, region 4 RAM_19150 PF00355 Rieske [2Fe-2S] domain RAM_19155 PF00314 Thaumatin family RAM_19160 PF11790 RAM_19160 RAM_19165 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel RAM_19175 PF00072 Response regulator receiver domain RAM_19175 PF00486 Transcriptional regulatory protein, C terminal RAM_19180 PF00512 His Kinase A (phospho-acceptor) domain RAM_19180 PF00672 HAMP domain RAM_19180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_19190 PF01757 RAM_19190 RAM_19195 PF04672 S-adenosyl methyltransferase RAM_19215 PF00196 Bacterial regulatory proteins, luxR family RAM_19215 PF12146 Putative lysophospholipase RAM_19220 PF08241 Methyltransferase domain RAM_19230 PF12840 Helix-turn-helix domain RAM_19240 PF14417 RAM_19240 RAM_19245 PF01381 Helix-turn-helix RAM_19250 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RAM_19250 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RAM_19255 PF01106 NifU-like domain RAM_19265 PF00708 Acylphosphatase RAM_19265 PF01300 Telomere recombination RAM_19265 PF07503 HypF finger RAM_19270 PF02492 CobW/HypB/UreG, nucleotide-binding domain RAM_19275 PF01155 Hydrogenase expression/synthesis hypA family RAM_19280 PF00586 AIR synthase related protein, N-terminal domain RAM_19280 PF02769 AIR synthase related protein, C-terminal domain RAM_19285 PF01924 Hydrogenase formation hypA family RAM_19290 PF01455 HupF/HypC family RAM_19295 PF01750 Hydrogenase maturation protease RAM_19315 PF01106 NifU-like domain RAM_19320 PF00374 Nickel-dependent hydrogenase RAM_19325 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RAM_19325 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RAM_19330 PF13580 SIS domain RAM_19335 PF01455 HupF/HypC family RAM_19340 PF13580 SIS domain RAM_19345 PF13385 Concanavalin A-like lectin/glucanases superfamily RAM_19350 PF05593 RAM_19350 RAM_19355 PF00106 short chain dehydrogenase RAM_19360 PF13560 Helix-turn-helix domain RAM_19365 PF13340 RAM_19365 RAM_19370 PF13586 RAM_19370 RAM_19380 PF00486 Transcriptional regulatory protein, C terminal RAM_19380 PF03704 Bacterial transcriptional activator domain RAM_19385 PF00561 alpha/beta hydrolase fold RAM_19395 PF00378 Enoyl-CoA hydratase/isomerase family RAM_19400 PF01638 HxlR-like helix-turn-helix RAM_19405 PF08240 Alcohol dehydrogenase GroES-like domain RAM_19405 PF13602 Zinc-binding dehydrogenase RAM_19420 PF00440 Bacterial regulatory proteins, tetR family RAM_19425 PF08240 Alcohol dehydrogenase GroES-like domain RAM_19425 PF13602 Zinc-binding dehydrogenase RAM_19430 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_19435 PF00296 Luciferase-like monooxygenase RAM_19440 PF00106 short chain dehydrogenase RAM_19445 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_19450 PF13577 SnoaL-like domain RAM_19455 PF00440 Bacterial regulatory proteins, tetR family RAM_19475 PF13458 Periplasmic binding protein RAM_19480 PF00005 ABC transporter RAM_19480 PF02653 RAM_19480 RAM_19480 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_19485 PF00005 ABC transporter RAM_19490 PF00378 Enoyl-CoA hydratase/isomerase family RAM_19495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19495 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19500 PF00501 AMP-binding enzyme RAM_19500 PF13193 AMP-binding enzyme C-terminal domain RAM_19505 PF13622 Thioesterase-like superfamily RAM_19510 PF13452 N-terminal half of MaoC dehydratase RAM_19515 PF00378 Enoyl-CoA hydratase/isomerase family RAM_19520 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19525 PF00171 Aldehyde dehydrogenase family RAM_19530 PF01844 HNH endonuclease RAM_19530 PF02720 RAM_19530 RAM_19535 PF02515 CoA-transferase family III RAM_19540 PF00108 Thiolase, N-terminal domain RAM_19540 PF02803 Thiolase, C-terminal domain RAM_19545 PF03060 Nitronate monooxygenase RAM_19550 PF00753 Metallo-beta-lactamase superfamily RAM_19555 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_19555 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_19560 PF00171 Aldehyde dehydrogenase family RAM_19565 PF13380 CoA binding domain RAM_19565 PF13549 ATP-grasp domain RAM_19565 PF13607 Succinyl-CoA ligase like flavodoxin domain RAM_19570 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19570 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19570 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19575 PF03972 MmgE/PrpD family RAM_19580 PF13622 Thioesterase-like superfamily RAM_19590 PF04909 Amidohydrolase RAM_19595 PF00440 Bacterial regulatory proteins, tetR family RAM_19600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19600 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19605 PF04909 Amidohydrolase RAM_19610 PF00440 Bacterial regulatory proteins, tetR family RAM_19615 PF01796 RAM_19615 RAM_19620 PF00108 Thiolase, N-terminal domain RAM_19620 PF02803 Thiolase, C-terminal domain RAM_19625 PF00106 short chain dehydrogenase RAM_19630 PF07681 RAM_19630 RAM_19635 PF00108 Thiolase, N-terminal domain RAM_19635 PF02803 Thiolase, C-terminal domain RAM_19640 PF00378 Enoyl-CoA hydratase/isomerase family RAM_19645 PF03061 Thioesterase superfamily RAM_19650 PF00232 Glycosyl hydrolase family 1 RAM_19655 PF00106 short chain dehydrogenase RAM_19660 PF00144 Beta-lactamase RAM_19665 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_19670 PF00378 Enoyl-CoA hydratase/isomerase family RAM_19675 PF00378 Enoyl-CoA hydratase/isomerase family RAM_19680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19680 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19685 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19690 PF00501 AMP-binding enzyme RAM_19690 PF13193 AMP-binding enzyme C-terminal domain RAM_19700 PF01796 RAM_19700 RAM_19700 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) RAM_19705 PF01575 MaoC like domain RAM_19710 PF00392 Bacterial regulatory proteins, gntR family RAM_19710 PF07729 FCD domain RAM_19715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19715 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19720 PF12833 Helix-turn-helix domain RAM_19730 PF05893 Acyl-CoA reductase (LuxC) RAM_19735 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19735 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19740 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_19740 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_19740 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_19745 PF00378 Enoyl-CoA hydratase/isomerase family RAM_19750 PF00392 Bacterial regulatory proteins, gntR family RAM_19750 PF07729 FCD domain RAM_19755 PF00106 short chain dehydrogenase RAM_19760 PF00809 Pterin binding enzyme RAM_19765 PF00501 AMP-binding enzyme RAM_19765 PF13193 AMP-binding enzyme C-terminal domain RAM_19770 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_19775 PF00440 Bacterial regulatory proteins, tetR family RAM_19780 PF00561 alpha/beta hydrolase fold RAM_19790 PF00440 Bacterial regulatory proteins, tetR family RAM_19790 PF13977 Bacterial transcriptional repressor RAM_19795 PF00890 FAD binding domain RAM_19800 PF02585 GlcNAc-PI de-N-acetylase RAM_19805 PF00931 NB-ARC domain RAM_19805 PF13424 Tetratricopeptide repeat RAM_19820 PF07398 RAM_19820 RAM_19820 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_19825 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_19825 PF00175 Oxidoreductase NAD-binding domain RAM_19825 PF00970 Oxidoreductase FAD-binding domain RAM_19825 PF03473 MOSC domain RAM_19825 PF03475 3-alpha domain RAM_19830 PF00480 ROK family RAM_19830 PF13412 Winged helix-turn-helix DNA-binding RAM_19835 PF07350 Protein of unknown function (DUF1479) RAM_19840 PF01546 Peptidase family M20/M25/M40 RAM_19840 PF07687 Peptidase dimerisation domain RAM_19850 PF13520 Amino acid permease RAM_19855 PF00723 Glycosyl hydrolases family 15 RAM_19860 PF07690 Major Facilitator Superfamily RAM_19875 PF13396 RAM_19875 RAM_19880 PF00196 Bacterial regulatory proteins, luxR family RAM_19895 PF10009 RAM_19895 RAM_19900 PF06897 RAM_19900 RAM_19910 PF00196 Bacterial regulatory proteins, luxR family RAM_19910 PF02399 RAM_19910 RAM_19915 PF01594 RAM_19915 RAM_19920 PF08450 SMP-30/Gluconolaconase/LRE-like region RAM_19925 PF00041 Fibronectin type III domain RAM_19925 PF07995 Glucose / Sorbosone dehydrogenase RAM_19935 PF02056 Family 4 glycosyl hydrolase RAM_19935 PF11975 Family 4 glycosyl hydrolase C-terminal domain RAM_19940 PF00528 Binding-protein-dependent transport system inner membrane component RAM_19945 PF00528 Binding-protein-dependent transport system inner membrane component RAM_19950 PF01547 Bacterial extracellular solute-binding protein RAM_19955 PF03537 Glycoside-hydrolase family GH114 RAM_19960 PF00455 RAM_19960 RAM_19960 PF08220 DeoR-like helix-turn-helix domain RAM_19965 PF01380 SIS domain RAM_19970 PF01869 BadF/BadG/BcrA/BcrD ATPase family RAM_19985 PF00294 pfkB family carbohydrate kinase RAM_19990 PF01116 Fructose-bisphosphate aldolase class-II RAM_19995 PF00652 Ricin-type beta-trefoil lectin domain RAM_19995 PF01738 Dienelactone hydrolase family RAM_20005 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_20005 PF00501 AMP-binding enzyme RAM_20005 PF00550 Phosphopantetheine attachment site RAM_20005 PF00698 Acyl transferase domain RAM_20005 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_20005 PF08659 KR domain RAM_20005 PF13193 AMP-binding enzyme C-terminal domain RAM_20005 PF14765 Polyketide synthase dehydratase RAM_20005 PF16197 RAM_20005 RAM_20010 PF00067 Cytochrome P450 RAM_20015 PF10517 RAM_20015 RAM_20020 PF00107 Zinc-binding dehydrogenase RAM_20020 PF08240 Alcohol dehydrogenase GroES-like domain RAM_20030 PF04542 Sigma-70 region 2 RAM_20030 PF08281 Sigma-70, region 4 RAM_20035 PF00041 Fibronectin type III domain RAM_20035 PF00759 Glycosyl hydrolase family 9 RAM_20035 PF00942 Cellulose binding domain RAM_20040 PF01229 Glycosyl hydrolases family 39 RAM_20040 PF05345 Putative Ig domain RAM_20040 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_20045 PF04616 Glycosyl hydrolases family 43 RAM_20045 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_20055 PF06441 Epoxide hydrolase N terminus RAM_20060 PF07336 Protein of unknown function (DUF1470) RAM_20060 PF11706 CGNR zinc finger RAM_20065 PF00378 Enoyl-CoA hydratase/isomerase family RAM_20065 PF02911 Formyl transferase, C-terminal domain RAM_20070 PF00486 Transcriptional regulatory protein, C terminal RAM_20070 PF00931 NB-ARC domain RAM_20070 PF03704 Bacterial transcriptional activator domain RAM_20075 PF00717 Peptidase S24-like RAM_20080 PF00005 ABC transporter RAM_20090 PF07291 RAM_20090 RAM_20105 PF13411 MerR HTH family regulatory protein RAM_20110 PF00501 AMP-binding enzyme RAM_20110 PF13193 AMP-binding enzyme C-terminal domain RAM_20120 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_20125 PF00440 Bacterial regulatory proteins, tetR family RAM_20130 PF00106 short chain dehydrogenase RAM_20135 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_20135 PF13378 Enolase C-terminal domain-like RAM_20140 PF00528 Binding-protein-dependent transport system inner membrane component RAM_20145 PF00528 Binding-protein-dependent transport system inner membrane component RAM_20150 PF13416 Bacterial extracellular solute-binding protein RAM_20155 PF00392 Bacterial regulatory proteins, gntR family RAM_20155 PF07729 FCD domain RAM_20160 PF05336 Domain of unknown function (DUF718) RAM_20165 PF03033 Glycosyltransferase family 28 N-terminal domain RAM_20170 PF00144 Beta-lactamase RAM_20180 PF00067 Cytochrome P450 RAM_20185 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RAM_20200 PF00501 AMP-binding enzyme RAM_20200 PF00550 Phosphopantetheine attachment site RAM_20200 PF00668 Condensation domain RAM_20200 PF00975 Thioesterase domain RAM_20200 PF13193 AMP-binding enzyme C-terminal domain RAM_20205 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_20210 PF00440 Bacterial regulatory proteins, tetR family RAM_20215 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel RAM_20225 PF04542 Sigma-70 region 2 RAM_20230 PF00561 alpha/beta hydrolase fold RAM_20235 PF12802 MarR family RAM_20240 PF01494 FAD binding domain RAM_20250 PF00480 ROK family RAM_20255 PF00480 ROK family RAM_20270 PF02653 RAM_20270 RAM_20275 PF10518 TAT (twin-arginine translocation) pathway signal sequence RAM_20275 PF13407 Periplasmic binding protein domain RAM_20280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_20280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_20285 PF01261 Xylose isomerase-like TIM barrel RAM_20285 PF07582 AP endonuclease family 2 C terminus RAM_20290 PF00107 Zinc-binding dehydrogenase RAM_20290 PF08240 Alcohol dehydrogenase GroES-like domain RAM_20295 PF00440 Bacterial regulatory proteins, tetR family RAM_20300 PF12697 Alpha/beta hydrolase family RAM_20305 PF00440 Bacterial regulatory proteins, tetR family RAM_20310 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_20310 PF14498 Glycosyl hydrolase family 65, N-terminal domain RAM_20315 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_20320 PF01872 RibD C-terminal domain RAM_20325 PF07944 Putative glycosyl hydrolase of unknown function (DUF1680) RAM_20325 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_20330 PF14014 RAM_20330 RAM_20340 PF00440 Bacterial regulatory proteins, tetR family RAM_20350 PF00553 Cellulose binding domain RAM_20350 PF01341 Glycosyl hydrolases family 6 RAM_20355 PF00652 Ricin-type beta-trefoil lectin domain RAM_20355 PF02057 Glycosyl hydrolase family 59 RAM_20360 PF00652 Ricin-type beta-trefoil lectin domain RAM_20360 PF09206 Alpha-L-arabinofuranosidase B, catalytic RAM_20365 PF00331 Glycosyl hydrolase family 10 RAM_20365 PF00652 Ricin-type beta-trefoil lectin domain RAM_20365 PF03664 Glycosyl hydrolase family 62 RAM_20370 PF00107 Zinc-binding dehydrogenase RAM_20370 PF08240 Alcohol dehydrogenase GroES-like domain RAM_20375 PF00440 Bacterial regulatory proteins, tetR family RAM_20380 PF00501 AMP-binding enzyme RAM_20380 PF13193 AMP-binding enzyme C-terminal domain RAM_20385 PF13185 GAF domain RAM_20385 PF13556 PucR C-terminal helix-turn-helix domain RAM_20390 PF00083 Sugar (and other) transporter RAM_20395 PF07519 Tannase and feruloyl esterase RAM_20400 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_20400 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_20400 PF02368 Bacterial Ig-like domain (group 2) RAM_20400 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase RAM_20400 PF14310 Fibronectin type III-like domain RAM_20410 PF02366 RAM_20410 RAM_20415 PF00331 Glycosyl hydrolase family 10 RAM_20420 PF13556 PucR C-terminal helix-turn-helix domain RAM_20425 PF00550 Phosphopantetheine attachment site RAM_20430 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_20430 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_20435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_20435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RAM_20440 PF00535 Glycosyl transferase family 2 RAM_20445 PF00067 Cytochrome P450 RAM_20450 PF00501 AMP-binding enzyme RAM_20450 PF13193 AMP-binding enzyme C-terminal domain RAM_20455 PF01370 NAD dependent epimerase/dehydratase family RAM_20460 PF00486 Transcriptional regulatory protein, C terminal RAM_20460 PF03704 Bacterial transcriptional activator domain RAM_20460 PF05729 NACHT domain RAM_20465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_20465 PF03466 LysR substrate binding domain RAM_20470 PF12697 Alpha/beta hydrolase family RAM_20475 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_20485 PF00106 short chain dehydrogenase RAM_20490 PF01047 MarR family RAM_20495 PF00931 NB-ARC domain RAM_20495 PF03704 Bacterial transcriptional activator domain RAM_20495 PF12862 RAM_20495 RAM_20495 PF13176 Tetratricopeptide repeat RAM_20495 PF13374 Tetratricopeptide repeat RAM_20495 PF13424 Tetratricopeptide repeat RAM_20495 PF13560 Helix-turn-helix domain RAM_20500 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RAM_20505 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_20505 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_20515 PF00072 Response regulator receiver domain RAM_20515 PF00196 Bacterial regulatory proteins, luxR family RAM_20520 PF07730 Histidine kinase RAM_20520 PF13796 RAM_20520 RAM_20525 PF00005 ABC transporter RAM_20530 PF02687 RAM_20530 RAM_20535 PF01593 Flavin containing amine oxidoreductase RAM_20540 PF00550 Phosphopantetheine attachment site RAM_20550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_20550 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_20550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_20555 PF00291 Pyridoxal-phosphate dependent enzyme RAM_20560 PF00501 AMP-binding enzyme RAM_20560 PF00550 Phosphopantetheine attachment site RAM_20560 PF00668 Condensation domain RAM_20560 PF00975 Thioesterase domain RAM_20560 PF13193 AMP-binding enzyme C-terminal domain RAM_20565 PF01061 RAM_20565 RAM_20570 PF03621 MbtH-like protein RAM_20575 PF00005 ABC transporter RAM_20575 PF13732 RAM_20575 RAM_20580 PF03176 MMPL family RAM_20585 PF00291 Pyridoxal-phosphate dependent enzyme RAM_20590 PF02423 Ornithine cyclodeaminase/mu-crystallin family RAM_20595 PF02222 ATP-grasp domain RAM_20600 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_20605 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_20610 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_20610 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_20615 PF00550 Phosphopantetheine attachment site RAM_20620 PF00486 Transcriptional regulatory protein, C terminal RAM_20620 PF03704 Bacterial transcriptional activator domain RAM_20625 PF00137 ATP synthase subunit C RAM_20630 PF13563 2'-5' RNA ligase superfamily RAM_20640 PF08223 PaaX-like protein C-terminal domain RAM_20645 PF10503 Esterase PHB depolymerase RAM_20650 PF00512 His Kinase A (phospho-acceptor) domain RAM_20650 PF00672 HAMP domain RAM_20650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_20655 PF00072 Response regulator receiver domain RAM_20655 PF00486 Transcriptional regulatory protein, C terminal RAM_20660 PF00144 Beta-lactamase RAM_20665 PF00459 Inositol monophosphatase family RAM_20670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_20670 PF03466 LysR substrate binding domain RAM_20675 PF13460 NADH(P)-binding RAM_20685 PF07690 Major Facilitator Superfamily RAM_20690 PF07848 PaaX-like protein RAM_20690 PF08223 PaaX-like protein C-terminal domain RAM_20695 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_20695 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_20705 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_20705 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_20705 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_20710 PF00550 Phosphopantetheine attachment site RAM_20715 PF00501 AMP-binding enzyme RAM_20715 PF00550 Phosphopantetheine attachment site RAM_20715 PF00668 Condensation domain RAM_20715 PF13193 AMP-binding enzyme C-terminal domain RAM_20720 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_20720 PF00550 Phosphopantetheine attachment site RAM_20720 PF00668 Condensation domain RAM_20720 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_20720 PF16197 RAM_20720 RAM_20730 PF00092 von Willebrand factor type A domain RAM_20730 PF03160 Calx-beta domain RAM_20735 PF01593 Flavin containing amine oxidoreductase RAM_20740 PF01593 Flavin containing amine oxidoreductase RAM_20745 PF01209 ubiE/COQ5 methyltransferase family RAM_20760 PF00494 Squalene/phytoene synthase RAM_20765 PF01593 Flavin containing amine oxidoreductase RAM_20770 PF00348 Polyprenyl synthetase RAM_20775 PF04240 RAM_20775 RAM_20780 PF13641 Glycosyltransferase like family 2 RAM_20785 PF01593 Flavin containing amine oxidoreductase RAM_20790 PF01066 CDP-alcohol phosphatidyltransferase RAM_20795 PF03631 RAM_20795 RAM_20800 PF13411 MerR HTH family regulatory protein RAM_20805 PF13411 MerR HTH family regulatory protein RAM_20810 PF00355 Rieske [2Fe-2S] domain RAM_20815 PF00528 Binding-protein-dependent transport system inner membrane component RAM_20820 PF00528 Binding-protein-dependent transport system inner membrane component RAM_20825 PF01547 Bacterial extracellular solute-binding protein RAM_20835 PF00356 Bacterial regulatory proteins, lacI family RAM_20835 PF13377 Periplasmic binding protein-like domain RAM_20840 PF00440 Bacterial regulatory proteins, tetR family RAM_20840 PF13977 Bacterial transcriptional repressor RAM_20845 PF07045 Protein of unknown function (DUF1330) RAM_20850 PF12697 Alpha/beta hydrolase family RAM_20855 PF00553 Cellulose binding domain RAM_20860 PF00754 F5/8 type C domain RAM_20860 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase RAM_20865 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_20870 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_20875 PF12840 Helix-turn-helix domain RAM_20880 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_20880 PF00553 Cellulose binding domain RAM_20885 PF01370 NAD dependent epimerase/dehydratase family RAM_20890 PF00989 PAS fold RAM_20890 PF01590 GAF domain RAM_20890 PF07228 Stage II sporulation protein E (SpoIIE) RAM_20890 PF08447 PAS fold RAM_20890 PF13466 STAS domain RAM_20890 PF13581 Histidine kinase-like ATPase domain RAM_20900 PF00561 alpha/beta hydrolase fold RAM_20900 PF08386 TAP-like protein RAM_20910 PF00296 Luciferase-like monooxygenase RAM_20915 PF08787 Alginate lyase RAM_20920 PF00141 Peroxidase RAM_20925 PF01475 Ferric uptake regulator family RAM_20930 PF00303 Thymidylate synthase RAM_20935 PF00186 Dihydrofolate reductase RAM_20940 PF00732 GMC oxidoreductase RAM_20940 PF05199 GMC oxidoreductase RAM_20945 PF00171 Aldehyde dehydrogenase family RAM_20950 PF13091 PLD-like domain RAM_20955 PF05729 NACHT domain RAM_20960 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_20960 PF00175 Oxidoreductase NAD-binding domain RAM_20970 PF00355 Rieske [2Fe-2S] domain RAM_20975 PF01614 Bacterial transcriptional regulator RAM_20975 PF09339 IclR helix-turn-helix domain RAM_20980 PF03405 Fatty acid desaturase RAM_20985 PF03648 Glycosyl hydrolase family 67 N-terminus RAM_20985 PF07477 Glycosyl hydrolase family 67 C-terminus RAM_20985 PF07488 Glycosyl hydrolase family 67 middle domain RAM_20990 PF13087 AAA domain RAM_20990 PF13482 RNase_H superfamily RAM_20990 PF13604 AAA domain RAM_21000 PF00106 short chain dehydrogenase RAM_21015 PF05050 Methyltransferase FkbM domain RAM_21020 PF17389 RAM_21020 RAM_21030 PF06150 ChaB RAM_21030 PF07498 Rho termination factor, N-terminal domain RAM_21040 PF01339 CheB methylesterase RAM_21045 PF01339 CheB methylesterase RAM_21055 PF00989 PAS fold RAM_21055 PF01739 CheR methyltransferase, SAM binding domain RAM_21055 PF03705 CheR methyltransferase, all-alpha domain RAM_21055 PF08448 PAS fold RAM_21065 PF00749 tRNA synthetases class I (E and Q), catalytic domain RAM_21075 PF08922 Domain of unknown function (DUF1905) RAM_21080 PF02575 YbaB/EbfC DNA-binding family RAM_21100 PF13581 Histidine kinase-like ATPase domain RAM_21110 PF07690 Major Facilitator Superfamily RAM_21115 PF06245 RAM_21115 RAM_21125 PF04978 Protein of unknown function (DUF664) RAM_21130 PF01068 ATP dependent DNA ligase domain RAM_21130 PF04679 ATP dependent DNA ligase C terminal region RAM_21140 PF06779 RAM_21140 RAM_21145 PF00440 Bacterial regulatory proteins, tetR family RAM_21155 PF02492 CobW/HypB/UreG, nucleotide-binding domain RAM_21155 PF07683 Cobalamin synthesis protein cobW C-terminal domain RAM_21160 PF02898 Nitric oxide synthase, oxygenase domain RAM_21165 PF12724 Flavodoxin domain RAM_21170 PF07690 Major Facilitator Superfamily RAM_21175 PF13088 BNR repeat-like domain RAM_21180 PF03601 RAM_21180 RAM_21185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_21185 PF03466 LysR substrate binding domain RAM_21190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_21190 PF03466 LysR substrate binding domain RAM_21195 PF01370 NAD dependent epimerase/dehydratase family RAM_21200 PF03551 Transcriptional regulator PadR-like family RAM_21205 PF13847 Methyltransferase domain RAM_21210 PF00246 Zinc carboxypeptidase RAM_21220 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain RAM_21220 PF00364 Biotin-requiring enzyme RAM_21220 PF01039 Carboxyl transferase domain RAM_21220 PF02785 Biotin carboxylase C-terminal domain RAM_21220 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_21220 PF08326 RAM_21220 RAM_21240 PF10518 TAT (twin-arginine translocation) pathway signal sequence RAM_21250 PF07690 Major Facilitator Superfamily RAM_21255 PF00155 Aminotransferase class I and II RAM_21255 PF00392 Bacterial regulatory proteins, gntR family RAM_21260 PF07690 Major Facilitator Superfamily RAM_21265 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_21270 PF02577 Bifunctional nuclease RAM_21275 PF04542 Sigma-70 region 2 RAM_21275 PF08281 Sigma-70, region 4 RAM_21275 PF12680 SnoaL-like domain RAM_21280 PF09860 RAM_21280 RAM_21285 PF00501 AMP-binding enzyme RAM_21290 PF00550 Phosphopantetheine attachment site RAM_21300 PF06013 Proteins of 100 residues with WXG RAM_21310 PF13649 Methyltransferase domain RAM_21325 PF01814 Hemerythrin HHE cation binding domain RAM_21335 PF13298 DNA polymerase Ligase (LigD) RAM_21340 PF00294 pfkB family carbohydrate kinase RAM_21345 PF00270 DEAD/DEAH box helicase RAM_21345 PF00271 Helicase conserved C-terminal domain RAM_21345 PF16124 RAM_21345 RAM_21350 PF03861 ANTAR domain RAM_21355 PF13466 STAS domain RAM_21360 PF07228 Stage II sporulation protein E (SpoIIE) RAM_21365 PF03861 ANTAR domain RAM_21365 PF13185 GAF domain RAM_21370 PF03861 ANTAR domain RAM_21370 PF13185 GAF domain RAM_21385 PF04072 Leucine carboxyl methyltransferase RAM_21390 PF07859 alpha/beta hydrolase fold RAM_21395 PF00440 Bacterial regulatory proteins, tetR family RAM_21400 PF13564 RAM_21400 RAM_21405 PF00561 alpha/beta hydrolase fold RAM_21410 PF00756 Putative esterase RAM_21425 PF00355 Rieske [2Fe-2S] domain RAM_21440 PF02146 Sir2 family RAM_21445 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_21450 PF01152 Bacterial-like globin RAM_21455 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_21460 PF01381 Helix-turn-helix RAM_21460 PF07883 Cupin domain RAM_21465 PF13420 Acetyltransferase (GNAT) domain RAM_21470 PF07883 Cupin domain RAM_21470 PF13560 Helix-turn-helix domain RAM_21475 PF00009 Elongation factor Tu GTP binding domain RAM_21475 PF03143 Elongation factor Tu C-terminal domain RAM_21475 PF03144 Elongation factor Tu domain 2 RAM_21480 PF12708 Pectate lyase superfamily protein RAM_21490 PF01118 Semialdehyde dehydrogenase, NAD binding domain RAM_21490 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation RAM_21495 PF00682 HMGL-like RAM_21495 PF07836 DmpG-like communication domain RAM_21505 PF01494 FAD binding domain RAM_21510 PF00440 Bacterial regulatory proteins, tetR family RAM_21515 PF08980 Domain of unknown function (DUF1883) RAM_21520 PF01425 Amidase RAM_21525 PF00144 Beta-lactamase RAM_21530 PF01810 RAM_21530 RAM_21535 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_21545 PF09859 RAM_21545 RAM_21550 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_21550 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RAM_21555 PF04542 Sigma-70 region 2 RAM_21555 PF08281 Sigma-70, region 4 RAM_21560 PF05175 Methyltransferase small domain RAM_21565 PF03734 L,D-transpeptidase catalytic domain RAM_21570 PF13520 Amino acid permease RAM_21575 PF01037 AsnC family RAM_21575 PF13404 AsnC-type helix-turn-helix domain RAM_21580 PF00202 Aminotransferase class-III RAM_21585 PF00067 Cytochrome P450 RAM_21595 PF00072 Response regulator receiver domain RAM_21595 PF00196 Bacterial regulatory proteins, luxR family RAM_21600 PF00082 Subtilase family RAM_21615 PF00069 Protein kinase domain RAM_21615 PF00553 Cellulose binding domain RAM_21620 PF14279 RAM_21620 RAM_21625 PF00183 Hsp90 protein RAM_21625 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_21630 PF03663 Glycosyl hydrolase family 76 RAM_21635 PF00127 Copper binding proteins, plastocyanin/azurin family RAM_21645 PF00127 Copper binding proteins, plastocyanin/azurin family RAM_21650 PF05425 RAM_21650 RAM_21660 PF04234 CopC domain RAM_21670 PF00156 Phosphoribosyl transferase domain RAM_21680 PF13411 MerR HTH family regulatory protein RAM_21695 PF14325 RAM_21695 RAM_21700 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_21705 PF11387 RAM_21705 RAM_21710 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RAM_21715 PF00535 Glycosyl transferase family 2 RAM_21715 PF13242 HAD-hyrolase-like RAM_21720 PF00171 Aldehyde dehydrogenase family RAM_21725 PF06081 RAM_21725 RAM_21735 PF03358 NADPH-dependent FMN reductase RAM_21740 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RAM_21740 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RAM_21740 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RAM_21745 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RAM_21750 PF00106 short chain dehydrogenase RAM_21755 PF00294 pfkB family carbohydrate kinase RAM_21755 PF01467 Cytidylyltransferase RAM_21760 PF13580 SIS domain RAM_21765 PF02543 Carbamoyltransferase RAM_21765 PF16861 RAM_21765 RAM_21770 PF16363 RAM_21770 RAM_21775 PF04230 RAM_21775 RAM_21780 PF00535 Glycosyl transferase family 2 RAM_21785 PF00535 Glycosyl transferase family 2 RAM_21790 PF00534 Glycosyl transferases group 1 RAM_21790 PF13439 Glycosyltransferase Family 4 RAM_21795 PF00534 Glycosyl transferases group 1 RAM_21800 PF01865 Protein of unknown function DUF47 RAM_21805 PF01384 RAM_21805 RAM_21810 PF00107 Zinc-binding dehydrogenase RAM_21810 PF08240 Alcohol dehydrogenase GroES-like domain RAM_21810 PF13823 Alcohol dehydrogenase GroES-associated RAM_21815 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_21815 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_21820 PF01370 NAD dependent epimerase/dehydratase family RAM_21825 PF01593 Flavin containing amine oxidoreductase RAM_21830 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_21835 PF03631 RAM_21835 RAM_21850 PF01028 Eukaryotic DNA topoisomerase I, catalytic core RAM_21855 PF07098 RAM_21855 RAM_21860 PF00355 Rieske [2Fe-2S] domain RAM_21860 PF01266 FAD dependent oxidoreductase RAM_21865 PF13535 ATP-grasp domain RAM_21875 PF05175 Methyltransferase small domain RAM_21880 PF09360 Iron-binding zinc finger CDGSH type RAM_21885 PF14518 Iron-containing redox enzyme RAM_21890 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_21895 PF13466 STAS domain RAM_21900 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_21905 PF01814 Hemerythrin HHE cation binding domain RAM_21910 PF01276 Orn/Lys/Arg decarboxylase, major domain RAM_21910 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RAM_21915 PF01546 Peptidase family M20/M25/M40 RAM_21915 PF07687 Peptidase dimerisation domain RAM_21920 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RAM_21925 PF00296 Luciferase-like monooxygenase RAM_21930 PF00528 Binding-protein-dependent transport system inner membrane component RAM_21935 PF00005 ABC transporter RAM_21940 PF09084 NMT1/THI5 like RAM_21945 PF00480 ROK family RAM_21950 PF08279 HTH domain RAM_21950 PF13280 RAM_21950 RAM_21955 PF06441 Epoxide hydrolase N terminus RAM_21960 PF06224 RAM_21960 RAM_21965 PF00486 Transcriptional regulatory protein, C terminal RAM_21965 PF03704 Bacterial transcriptional activator domain RAM_21970 PF01494 FAD binding domain RAM_21975 PF01230 HIT domain RAM_21980 PF13556 PucR C-terminal helix-turn-helix domain RAM_21995 PF01047 MarR family RAM_22000 PF13628 RAM_22000 RAM_22005 PF01590 GAF domain RAM_22005 PF02954 Bacterial regulatory protein, Fis family RAM_22015 PF02332 Methane/Phenol/Toluene Hydroxylase RAM_22020 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_22020 PF00175 Oxidoreductase NAD-binding domain RAM_22020 PF00970 Oxidoreductase FAD-binding domain RAM_22025 PF02332 Methane/Phenol/Toluene Hydroxylase RAM_22030 PF02406 MmoB/DmpM family RAM_22035 PF04909 Amidohydrolase RAM_22040 PF01883 Domain of unknown function DUF59 RAM_22045 PF00107 Zinc-binding dehydrogenase RAM_22045 PF08240 Alcohol dehydrogenase GroES-like domain RAM_22050 PF00118 TCP-1/cpn60 chaperonin family RAM_22055 PF13676 TIR domain RAM_22060 PF00534 Glycosyl transferases group 1 RAM_22060 PF00931 NB-ARC domain RAM_22060 PF13560 Helix-turn-helix domain RAM_22070 PF00583 Acetyltransferase (GNAT) family RAM_22080 PF06441 Epoxide hydrolase N terminus RAM_22085 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_22090 PF13409 Glutathione S-transferase, N-terminal domain RAM_22090 PF13410 Glutathione S-transferase, C-terminal domain RAM_22095 PF12802 MarR family RAM_22100 PF04264 YceI-like domain RAM_22105 PF00440 Bacterial regulatory proteins, tetR family RAM_22110 PF13576 Pentapeptide repeats (9 copies) RAM_22115 PF01055 Glycosyl hydrolases family 31 RAM_22120 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22125 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22130 PF13416 Bacterial extracellular solute-binding protein RAM_22135 PF00356 Bacterial regulatory proteins, lacI family RAM_22135 PF13377 Periplasmic binding protein-like domain RAM_22145 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_22145 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_22145 PF03422 Carbohydrate binding module (family 6) RAM_22145 PF14310 Fibronectin type III-like domain RAM_22150 PF04672 S-adenosyl methyltransferase RAM_22155 PF00067 Cytochrome P450 RAM_22160 PF12146 Putative lysophospholipase RAM_22165 PF00563 EAL domain RAM_22165 PF00989 PAS fold RAM_22165 PF00990 GGDEF domain RAM_22170 PF00881 Nitroreductase family RAM_22180 PF02754 RAM_22180 RAM_22180 PF13183 4Fe-4S dicluster domain RAM_22185 PF00498 FHA domain RAM_22195 PF00083 Sugar (and other) transporter RAM_22195 PF07690 Major Facilitator Superfamily RAM_22200 PF00440 Bacterial regulatory proteins, tetR family RAM_22205 PF08501 Shikimate dehydrogenase substrate binding domain RAM_22210 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_22210 PF01261 Xylose isomerase-like TIM barrel RAM_22215 PF01547 Bacterial extracellular solute-binding protein RAM_22220 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22225 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22230 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_22235 PF00515 Tetratricopeptide repeat RAM_22235 PF13181 Tetratricopeptide repeat RAM_22235 PF13191 AAA ATPase domain RAM_22235 PF13432 Tetratricopeptide repeat RAM_22235 PF14559 Tetratricopeptide repeat RAM_22245 PF09994 Uncharacterized alpha/beta hydrolase domain (DUF2235) RAM_22250 PF00583 Acetyltransferase (GNAT) family RAM_22255 PF07690 Major Facilitator Superfamily RAM_22260 PF02624 YcaO-like family RAM_22270 PF04237 YjbR RAM_22275 PF09362 RAM_22275 RAM_22285 PF04542 Sigma-70 region 2 RAM_22285 PF04545 Sigma-70, region 4 RAM_22290 PF12900 Pyridoxamine 5'-phosphate oxidase RAM_22295 PF07730 Histidine kinase RAM_22295 PF13185 GAF domain RAM_22300 PF00072 Response regulator receiver domain RAM_22300 PF00196 Bacterial regulatory proteins, luxR family RAM_22310 PF08592 RAM_22310 RAM_22315 PF00440 Bacterial regulatory proteins, tetR family RAM_22320 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_22320 PF14759 Reductase C-terminal RAM_22325 PF01227 GTP cyclohydrolase I RAM_22330 PF12840 Helix-turn-helix domain RAM_22340 PF00356 Bacterial regulatory proteins, lacI family RAM_22340 PF13377 Periplasmic binding protein-like domain RAM_22345 PF01301 Glycosyl hydrolases family 35 RAM_22345 PF08305 NPCBM/NEW2 domain RAM_22345 PF10435 Beta-galactosidase, domain 2 RAM_22345 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase RAM_22345 PF13363 Beta-galactosidase, domain 3 RAM_22345 PF13364 Beta-galactosidase jelly roll domain RAM_22355 PF01810 RAM_22355 RAM_22365 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_22370 PF00553 Cellulose binding domain RAM_22380 PF00768 D-alanyl-D-alanine carboxypeptidase RAM_22385 PF03372 Endonuclease/Exonuclease/phosphatase family RAM_22390 PF00356 Bacterial regulatory proteins, lacI family RAM_22390 PF13377 Periplasmic binding protein-like domain RAM_22395 PF13407 Periplasmic binding protein domain RAM_22400 PF00005 ABC transporter RAM_22405 PF02653 RAM_22405 RAM_22410 PF02653 RAM_22410 RAM_22415 PF06964 Alpha-L-arabinofuranosidase C-terminus RAM_22415 PF13385 Concanavalin A-like lectin/glucanases superfamily RAM_22420 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_22420 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_22425 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_22430 PF02610 L-arabinose isomerase RAM_22430 PF11762 L-arabinose isomerase C-terminal domain RAM_22435 PF13407 Periplasmic binding protein domain RAM_22440 PF00005 ABC transporter RAM_22445 PF02653 RAM_22445 RAM_22450 PF09362 RAM_22450 RAM_22455 PF13377 Periplasmic binding protein-like domain RAM_22460 PF00067 Cytochrome P450 RAM_22465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_22465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_22470 PF01614 Bacterial transcriptional regulator RAM_22470 PF09339 IclR helix-turn-helix domain RAM_22475 PF00230 Major intrinsic protein RAM_22480 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_22480 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_22485 PF01266 FAD dependent oxidoreductase RAM_22485 PF16901 RAM_22485 RAM_22490 PF01636 Phosphotransferase enzyme family RAM_22495 PF00764 Arginosuccinate synthase RAM_22500 PF13602 Zinc-binding dehydrogenase RAM_22505 PF00440 Bacterial regulatory proteins, tetR family RAM_22510 PF00486 Transcriptional regulatory protein, C terminal RAM_22510 PF00931 NB-ARC domain RAM_22510 PF03704 Bacterial transcriptional activator domain RAM_22510 PF13424 Tetratricopeptide repeat RAM_22520 PF12385 RAM_22520 RAM_22530 PF01037 AsnC family RAM_22530 PF13404 AsnC-type helix-turn-helix domain RAM_22535 PF00144 Beta-lactamase RAM_22540 PF01565 FAD binding domain RAM_22540 PF04030 D-arabinono-1,4-lactone oxidase RAM_22545 PF00356 Bacterial regulatory proteins, lacI family RAM_22545 PF13377 Periplasmic binding protein-like domain RAM_22550 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_22555 PF01547 Bacterial extracellular solute-binding protein RAM_22560 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22565 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22570 PF04854 RAM_22570 RAM_22575 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_22580 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_22580 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_22585 PF14100 RAM_22585 RAM_22590 PF00544 Pectate lyase RAM_22595 PF03211 Pectate lyase RAM_22600 PF01095 Pectinesterase RAM_22605 PF04616 Glycosyl hydrolases family 43 RAM_22610 PF01301 Glycosyl hydrolases family 35 RAM_22610 PF10435 Beta-galactosidase, domain 2 RAM_22610 PF13364 Beta-galactosidase jelly roll domain RAM_22615 PF13466 STAS domain RAM_22620 PF00486 Transcriptional regulatory protein, C terminal RAM_22620 PF03704 Bacterial transcriptional activator domain RAM_22635 PF00582 Universal stress protein family RAM_22640 PF01478 Type IV leader peptidase family RAM_22640 PF06750 RAM_22640 RAM_22650 PF07963 Prokaryotic N-terminal methylation motif RAM_22655 PF07963 Prokaryotic N-terminal methylation motif RAM_22660 PF00482 Type II secretion system (T2SS), protein F RAM_22665 PF00437 Type II/IV secretion system protein RAM_22665 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RAM_22670 PF00437 Type II/IV secretion system protein RAM_22675 PF07963 Prokaryotic N-terminal methylation motif RAM_22700 PF01370 NAD dependent epimerase/dehydratase family RAM_22700 PF08338 Domain of unknown function (DUF1731) RAM_22705 PF13556 PucR C-terminal helix-turn-helix domain RAM_22710 PF07859 alpha/beta hydrolase fold RAM_22715 PF00107 Zinc-binding dehydrogenase RAM_22715 PF08240 Alcohol dehydrogenase GroES-like domain RAM_22730 PF00483 Nucleotidyl transferase RAM_22735 PF00534 Glycosyl transferases group 1 RAM_22735 PF13439 Glycosyltransferase Family 4 RAM_22745 PF13466 STAS domain RAM_22750 PF02607 B12 binding domain RAM_22750 PF13411 MerR HTH family regulatory protein RAM_22755 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_22760 PF00703 Glycosyl hydrolases family 2 RAM_22760 PF00754 F5/8 type C domain RAM_22770 PF13556 PucR C-terminal helix-turn-helix domain RAM_22775 PF00009 Elongation factor Tu GTP binding domain RAM_22775 PF00679 Elongation factor G C-terminus RAM_22775 PF03144 Elongation factor Tu domain 2 RAM_22775 PF03764 Elongation factor G, domain IV RAM_22775 PF14492 Elongation Factor G, domain II RAM_22780 PF00266 Aminotransferase class-V RAM_22790 PF09594 RAM_22790 RAM_22795 PF14325 RAM_22795 RAM_22800 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_22805 PF01494 FAD binding domain RAM_22810 PF04075 Domain of unknown function (DUF385) RAM_22815 PF01047 MarR family RAM_22820 PF07690 Major Facilitator Superfamily RAM_22825 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_22825 PF00550 Phosphopantetheine attachment site RAM_22825 PF00698 Acyl transferase domain RAM_22825 PF00975 Thioesterase domain RAM_22825 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_22825 PF16197 RAM_22825 RAM_22830 PF00501 AMP-binding enzyme RAM_22840 PF00756 Putative esterase RAM_22845 PF00106 short chain dehydrogenase RAM_22850 PF03033 Glycosyltransferase family 28 N-terminal domain RAM_22855 PF02698 DUF218 domain RAM_22860 PF13298 DNA polymerase Ligase (LigD) RAM_22865 PF06197 RAM_22865 RAM_22870 PF01513 ATP-NAD kinase RAM_22875 PF00743 Flavin-binding monooxygenase-like RAM_22875 PF13450 NAD(P)-binding Rossmann-like domain RAM_22880 PF00106 short chain dehydrogenase RAM_22885 PF00561 alpha/beta hydrolase fold RAM_22890 PF00067 Cytochrome P450 RAM_22895 PF00440 Bacterial regulatory proteins, tetR family RAM_22900 PF00931 NB-ARC domain RAM_22900 PF13424 Tetratricopeptide repeat RAM_22905 PF00381 PTS HPr component phosphorylation site RAM_22910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RAM_22910 PF02378 Phosphotransferase system, EIIC RAM_22915 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RAM_22920 PF00294 pfkB family carbohydrate kinase RAM_22925 PF00455 RAM_22925 RAM_22925 PF08220 DeoR-like helix-turn-helix domain RAM_22930 PF00391 PEP-utilising enzyme, mobile domain RAM_22930 PF02896 PEP-utilising enzyme, TIM barrel domain RAM_22930 PF05524 PEP-utilising enzyme, N-terminal RAM_22935 PF00899 ThiF family RAM_22940 PF03780 RAM_22940 RAM_22945 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_22950 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_22950 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_22950 PF14310 Fibronectin type III-like domain RAM_22955 PF00356 Bacterial regulatory proteins, lacI family RAM_22955 PF13377 Periplasmic binding protein-like domain RAM_22960 PF13416 Bacterial extracellular solute-binding protein RAM_22965 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22970 PF00528 Binding-protein-dependent transport system inner membrane component RAM_22975 PF15979 RAM_22975 RAM_22980 PF00356 Bacterial regulatory proteins, lacI family RAM_22980 PF13377 Periplasmic binding protein-like domain RAM_22985 PF00331 Glycosyl hydrolase family 10 RAM_22990 PF01522 Polysaccharide deacetylase RAM_22995 PF00487 RAM_22995 RAM_23000 PF00313 'Cold-shock' DNA-binding domain RAM_23005 PF02353 Mycolic acid cyclopropane synthetase RAM_23010 PF01565 FAD binding domain RAM_23030 PF13340 RAM_23030 RAM_23035 PF13586 RAM_23035 RAM_23040 PF01544 CorA-like Mg2+ transporter protein RAM_23045 PF00072 Response regulator receiver domain RAM_23045 PF00512 His Kinase A (phospho-acceptor) domain RAM_23045 PF00672 HAMP domain RAM_23045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_23045 PF13185 GAF domain RAM_23050 PF03861 ANTAR domain RAM_23050 PF07228 Stage II sporulation protein E (SpoIIE) RAM_23050 PF08447 PAS fold RAM_23055 PF01699 Sodium/calcium exchanger protein RAM_23060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_23060 PF03466 LysR substrate binding domain RAM_23065 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_23065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_23065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_23075 PF07510 RAM_23075 RAM_23080 PF03881 Fructosamine kinase RAM_23085 PF04237 YjbR RAM_23090 PF00583 Acetyltransferase (GNAT) family RAM_23095 PF01433 Peptidase family M1 RAM_23095 PF05345 Putative Ig domain RAM_23100 PF04343 RAM_23100 RAM_23105 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_23105 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_23110 PF00356 Bacterial regulatory proteins, lacI family RAM_23110 PF13377 Periplasmic binding protein-like domain RAM_23115 PF00005 ABC transporter RAM_23120 PF02653 RAM_23120 RAM_23125 PF02653 RAM_23125 RAM_23130 PF13407 Periplasmic binding protein domain RAM_23135 PF05336 Domain of unknown function (DUF718) RAM_23140 PF06134 L-rhamnose isomerase (RhaA) RAM_23145 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_23145 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_23150 PF02610 L-arabinose isomerase RAM_23155 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RAM_23155 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RAM_23160 PF00072 Response regulator receiver domain RAM_23160 PF00196 Bacterial regulatory proteins, luxR family RAM_23165 PF07730 Histidine kinase RAM_23175 PF00356 Bacterial regulatory proteins, lacI family RAM_23175 PF13377 Periplasmic binding protein-like domain RAM_23180 PF01055 Glycosyl hydrolases family 31 RAM_23180 PF03422 Carbohydrate binding module (family 6) RAM_23180 PF16990 RAM_23180 RAM_23180 PF17137 RAM_23180 RAM_23185 PF03713 Domain of unknown function (DUF305) RAM_23190 PF09362 RAM_23190 RAM_23195 PF00754 F5/8 type C domain RAM_23195 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_23200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_23205 PF12833 Helix-turn-helix domain RAM_23225 PF13563 2'-5' RNA ligase superfamily RAM_23235 PF00817 impB/mucB/samB family RAM_23235 PF11798 IMS family HHH motif RAM_23235 PF11799 impB/mucB/samB family C-terminal domain RAM_23240 PF04072 Leucine carboxyl methyltransferase RAM_23245 PF11774 Lsr2 RAM_23250 PF07690 Major Facilitator Superfamily RAM_23255 PF02634 FdhD/NarQ family RAM_23260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_23260 PF03466 LysR substrate binding domain RAM_23265 PF00549 CoA-ligase RAM_23265 PF02629 CoA binding domain RAM_23270 PF00549 CoA-ligase RAM_23270 PF08442 ATP-grasp domain RAM_23275 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_23275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_23275 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_23280 PF02515 CoA-transferase family III RAM_23285 PF13380 CoA binding domain RAM_23285 PF13549 ATP-grasp domain RAM_23285 PF13607 Succinyl-CoA ligase like flavodoxin domain RAM_23290 PF07690 Major Facilitator Superfamily RAM_23295 PF00392 Bacterial regulatory proteins, gntR family RAM_23295 PF07729 FCD domain RAM_23300 PF02558 Ketopantoate reductase PanE/ApbA RAM_23300 PF08546 Ketopantoate reductase PanE/ApbA C terminal RAM_23305 PF00384 Molybdopterin oxidoreductase RAM_23305 PF01568 Molydopterin dinucleotide binding domain RAM_23310 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin RAM_23310 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RAM_23310 PF10531 SLBB domain RAM_23310 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_23315 PF00037 4Fe-4S binding domain RAM_23315 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_23315 PF13510 2Fe-2S iron-sulfur cluster binding domain RAM_23320 PF01261 Xylose isomerase-like TIM barrel RAM_23325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_23325 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_23330 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_23330 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_23330 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_23335 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_23335 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_23340 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_23340 PF01799 [2Fe-2S] binding domain RAM_23345 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_23345 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_23350 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_23355 PF00860 Permease family RAM_23360 PF06094 AIG2-like family RAM_23365 PF02595 Glycerate kinase family RAM_23370 PF00440 Bacterial regulatory proteins, tetR family RAM_23375 PF00723 Glycosyl hydrolases family 15 RAM_23375 PF09137 Glucodextranase, domain N RAM_23380 PF01513 ATP-NAD kinase RAM_23385 PF01145 SPFH domain / Band 7 family RAM_23390 PF00293 NUDIX domain RAM_23395 PF01494 FAD binding domain RAM_23400 PF00440 Bacterial regulatory proteins, tetR family RAM_23400 PF02796 Helix-turn-helix domain of resolvase RAM_23405 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_23405 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_23405 PF02929 Beta galactosidase small chain RAM_23405 PF16353 RAM_23405 RAM_23410 PF00356 Bacterial regulatory proteins, lacI family RAM_23410 PF13377 Periplasmic binding protein-like domain RAM_23415 PF00324 Amino acid permease RAM_23420 PF04960 Glutaminase RAM_23425 PF13086 AAA domain RAM_23425 PF13087 AAA domain RAM_23430 PF08348 RAM_23430 RAM_23430 PF13309 RAM_23430 RAM_23435 PF00291 Pyridoxal-phosphate dependent enzyme RAM_23440 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_23440 PF00550 Phosphopantetheine attachment site RAM_23440 PF00698 Acyl transferase domain RAM_23440 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_23440 PF03060 Nitronate monooxygenase RAM_23440 PF08659 KR domain RAM_23445 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_23445 PF00698 Acyl transferase domain RAM_23445 PF01648 4'-phosphopantetheinyl transferase superfamily RAM_23445 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_23445 PF14765 Polyketide synthase dehydratase RAM_23445 PF16197 RAM_23445 RAM_23450 PF00550 Phosphopantetheine attachment site RAM_23455 PF00561 alpha/beta hydrolase fold RAM_23460 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_23465 PF00106 short chain dehydrogenase RAM_23470 PF07690 Major Facilitator Superfamily RAM_23475 PF02811 PHP domain RAM_23480 PF01896 Eukaryotic and archaeal DNA primase small subunit RAM_23485 PF00108 Thiolase, N-terminal domain RAM_23485 PF02803 Thiolase, C-terminal domain RAM_23490 PF01638 HxlR-like helix-turn-helix RAM_23500 PF00754 F5/8 type C domain RAM_23500 PF07705 CARDB RAM_23505 PF13460 NADH(P)-binding RAM_23510 PF10518 TAT (twin-arginine translocation) pathway signal sequence RAM_23510 PF14498 Glycosyl hydrolase family 65, N-terminal domain RAM_23515 PF13564 RAM_23515 RAM_23520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_23520 PF03466 LysR substrate binding domain RAM_23525 PF13419 Haloacid dehalogenase-like hydrolase RAM_23535 PF02515 CoA-transferase family III RAM_23540 PF02515 CoA-transferase family III RAM_23545 PF00356 Bacterial regulatory proteins, lacI family RAM_23545 PF13377 Periplasmic binding protein-like domain RAM_23550 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) RAM_23555 PF01546 Peptidase family M20/M25/M40 RAM_23555 PF07687 Peptidase dimerisation domain RAM_23560 PF12697 Alpha/beta hydrolase family RAM_23565 PF08241 Methyltransferase domain RAM_23570 PF13411 MerR HTH family regulatory protein RAM_23575 PF12840 Helix-turn-helix domain RAM_23580 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_23595 PF00248 Aldo/keto reductase family RAM_23600 PF00296 Luciferase-like monooxygenase RAM_23605 PF02673 RAM_23605 RAM_23610 PF00300 Histidine phosphatase superfamily (branch 1) RAM_23615 PF01432 Peptidase family M3 RAM_23620 PF00574 Clp protease RAM_23625 PF00056 lactate/malate dehydrogenase, NAD binding domain RAM_23625 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RAM_23630 PF01047 MarR family RAM_23635 PF14534 Domain of unknown function (DUF4440) RAM_23645 PF14273 RAM_23645 RAM_23650 PF13515 RAM_23650 RAM_23655 PF07971 Glycosyl hydrolase family 92 RAM_23660 PF00754 F5/8 type C domain RAM_23660 PF07971 Glycosyl hydrolase family 92 RAM_23665 PF07519 Tannase and feruloyl esterase RAM_23670 PF13649 Methyltransferase domain RAM_23675 PF12833 Helix-turn-helix domain RAM_23680 PF13602 Zinc-binding dehydrogenase RAM_23685 PF01738 Dienelactone hydrolase family RAM_23690 PF01546 Peptidase family M20/M25/M40 RAM_23690 PF07687 Peptidase dimerisation domain RAM_23695 PF04951 D-aminopeptidase RAM_23700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_23705 PF00528 Binding-protein-dependent transport system inner membrane component RAM_23710 PF00528 Binding-protein-dependent transport system inner membrane component RAM_23715 PF00005 ABC transporter RAM_23715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_23725 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_23730 PF02016 LD-carboxypeptidase RAM_23735 PF00326 Prolyl oligopeptidase family RAM_23740 PF11290 RAM_23740 RAM_23750 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase RAM_23755 PF11296 RAM_23755 RAM_23760 PF01957 NfeD-like C-terminal, partner-binding RAM_23765 PF01145 SPFH domain / Band 7 family RAM_23770 PF01145 SPFH domain / Band 7 family RAM_23775 PF00962 Adenosine/AMP deaminase RAM_23785 PF00188 Cysteine-rich secretory protein family RAM_23790 PF00924 Mechanosensitive ion channel RAM_23795 PF00083 Sugar (and other) transporter RAM_23795 PF07690 Major Facilitator Superfamily RAM_23800 PF00440 Bacterial regulatory proteins, tetR family RAM_23805 PF01494 FAD binding domain RAM_23810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_23815 PF12840 Helix-turn-helix domain RAM_23820 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_23825 PF00440 Bacterial regulatory proteins, tetR family RAM_23830 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_23835 PF01872 RibD C-terminal domain RAM_23845 PF11706 CGNR zinc finger RAM_23855 PF00589 Phage integrase family RAM_23865 PF03795 YCII-related domain RAM_23870 PF04542 Sigma-70 region 2 RAM_23880 PF12840 Helix-turn-helix domain RAM_23885 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_23900 PF00440 Bacterial regulatory proteins, tetR family RAM_23905 PF12833 Helix-turn-helix domain RAM_23905 PF12852 Cupin RAM_23910 PF13460 NADH(P)-binding RAM_23915 PF08592 RAM_23915 RAM_23920 PF06445 GyrI-like small molecule binding domain RAM_23925 PF03795 YCII-related domain RAM_23930 PF00561 alpha/beta hydrolase fold RAM_23935 PF04542 Sigma-70 region 2 RAM_23935 PF08281 Sigma-70, region 4 RAM_23940 PF00440 Bacterial regulatory proteins, tetR family RAM_23945 PF00067 Cytochrome P450 RAM_23950 PF00440 Bacterial regulatory proteins, tetR family RAM_23950 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_23955 PF00005 ABC transporter RAM_23960 PF01061 RAM_23960 RAM_23965 PF00176 SNF2 family N-terminal domain RAM_23965 PF00271 Helicase conserved C-terminal domain RAM_23965 PF12419 RAM_23965 RAM_23975 PF01494 FAD binding domain RAM_23980 PF00440 Bacterial regulatory proteins, tetR family RAM_23985 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_23990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_23990 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_23995 PF00440 Bacterial regulatory proteins, tetR family RAM_24010 PF01381 Helix-turn-helix RAM_24015 PF13420 Acetyltransferase (GNAT) domain RAM_24020 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_24025 PF12840 Helix-turn-helix domain RAM_24030 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_24035 PF00589 Phage integrase family RAM_24045 PF03009 Glycerophosphoryl diester phosphodiesterase family RAM_24050 PF01471 Putative peptidoglycan binding domain RAM_24050 PF06737 Transglycosylase-like domain RAM_24055 PF11700 RAM_24055 RAM_24060 PF00265 Thymidine kinase RAM_24065 PF13397 Domain of unknown function (DUF4109) RAM_24070 PF00293 NUDIX domain RAM_24075 PF00455 RAM_24075 RAM_24075 PF08220 DeoR-like helix-turn-helix domain RAM_24080 PF02585 GlcNAc-PI de-N-acetylase RAM_24085 PF00535 Glycosyl transferase family 2 RAM_24090 PF00795 Carbon-nitrogen hydrolase RAM_24095 PF07969 Amidohydrolase family RAM_24120 PF01965 DJ-1/PfpI family RAM_24120 PF12833 Helix-turn-helix domain RAM_24125 PF01638 HxlR-like helix-turn-helix RAM_24145 PF00486 Transcriptional regulatory protein, C terminal RAM_24145 PF00931 NB-ARC domain RAM_24145 PF03704 Bacterial transcriptional activator domain RAM_24150 PF13358 DDE superfamily endonuclease RAM_24150 PF13565 RAM_24150 RAM_24155 PF05147 Lanthionine synthetase C-like protein RAM_24155 PF13575 RAM_24155 RAM_24165 PF00486 Transcriptional regulatory protein, C terminal RAM_24165 PF03704 Bacterial transcriptional activator domain RAM_24170 PF13522 Glutamine amidotransferase domain RAM_24175 PF02310 B12 binding domain RAM_24180 PF06368 Methylaspartate mutase E chain (MutE) RAM_24185 PF00152 tRNA synthetases class II (D, K and N) RAM_24190 PF01645 Conserved region in glutamate synthase RAM_24195 PF00501 AMP-binding enzyme RAM_24195 PF13193 AMP-binding enzyme C-terminal domain RAM_24200 PF12680 SnoaL-like domain RAM_24205 PF01063 Aminotransferase class IV RAM_24215 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_24215 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_24215 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_24220 PF13560 Helix-turn-helix domain RAM_24225 PF01212 Beta-eliminating lyase RAM_24230 PF13535 ATP-grasp domain RAM_24235 PF00206 Lyase RAM_24235 PF14698 Argininosuccinate lyase C-terminal RAM_24240 PF00291 Pyridoxal-phosphate dependent enzyme RAM_24245 PF00975 Thioesterase domain RAM_24255 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_24255 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_24260 PF00698 Acyl transferase domain RAM_24265 PF00144 Beta-lactamase RAM_24265 PF00501 AMP-binding enzyme RAM_24265 PF00550 Phosphopantetheine attachment site RAM_24265 PF00668 Condensation domain RAM_24265 PF13193 AMP-binding enzyme C-terminal domain RAM_24270 PF03621 MbtH-like protein RAM_24275 PF00501 AMP-binding enzyme RAM_24275 PF00550 Phosphopantetheine attachment site RAM_24275 PF00668 Condensation domain RAM_24275 PF13193 AMP-binding enzyme C-terminal domain RAM_24280 PF00501 AMP-binding enzyme RAM_24280 PF00550 Phosphopantetheine attachment site RAM_24280 PF13193 AMP-binding enzyme C-terminal domain RAM_24285 PF00288 GHMP kinases N terminal domain RAM_24285 PF08544 GHMP kinases C terminal RAM_24290 PF05977 Transmembrane secretion effector RAM_24295 PF01546 Peptidase family M20/M25/M40 RAM_24300 PF12840 Helix-turn-helix domain RAM_24300 PF13649 Methyltransferase domain RAM_24305 PF00155 Aminotransferase class I and II RAM_24310 PF00486 Transcriptional regulatory protein, C terminal RAM_24310 PF03704 Bacterial transcriptional activator domain RAM_24315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_24315 PF03466 LysR substrate binding domain RAM_24320 PF01494 FAD binding domain RAM_24325 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_24325 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_24330 PF13577 SnoaL-like domain RAM_24335 PF07978 NIPSNAP RAM_24340 PF03069 Acetamidase/Formamidase family RAM_24365 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_24365 PF13378 Enolase C-terminal domain-like RAM_24370 PF00392 Bacterial regulatory proteins, gntR family RAM_24370 PF07729 FCD domain RAM_24375 PF00528 Binding-protein-dependent transport system inner membrane component RAM_24380 PF00528 Binding-protein-dependent transport system inner membrane component RAM_24385 PF13586 RAM_24385 RAM_24390 PF13340 RAM_24390 RAM_24395 PF01547 Bacterial extracellular solute-binding protein RAM_24400 PF03621 MbtH-like protein RAM_24405 PF00501 AMP-binding enzyme RAM_24405 PF00550 Phosphopantetheine attachment site RAM_24405 PF13193 AMP-binding enzyme C-terminal domain RAM_24410 PF00291 Pyridoxal-phosphate dependent enzyme RAM_24415 PF02423 Ornithine cyclodeaminase/mu-crystallin family RAM_24420 PF02310 B12 binding domain RAM_24425 PF06368 Methylaspartate mutase E chain (MutE) RAM_24430 PF01177 Asp/Glu/Hydantoin racemase RAM_24435 PF00501 AMP-binding enzyme RAM_24435 PF00550 Phosphopantetheine attachment site RAM_24435 PF00668 Condensation domain RAM_24435 PF00975 Thioesterase domain RAM_24435 PF13193 AMP-binding enzyme C-terminal domain RAM_24440 PF04738 RAM_24440 RAM_24445 PF05977 Transmembrane secretion effector RAM_24450 PF02655 ATP-grasp domain RAM_24455 PF00501 AMP-binding enzyme RAM_24455 PF00550 Phosphopantetheine attachment site RAM_24455 PF00668 Condensation domain RAM_24455 PF13193 AMP-binding enzyme C-terminal domain RAM_24460 PF03704 Bacterial transcriptional activator domain RAM_24470 PF00486 Transcriptional regulatory protein, C terminal RAM_24470 PF00931 NB-ARC domain RAM_24470 PF03704 Bacterial transcriptional activator domain RAM_24470 PF13424 Tetratricopeptide repeat RAM_24475 PF12680 SnoaL-like domain RAM_24480 PF13411 MerR HTH family regulatory protein RAM_24480 PF13646 HEAT repeats RAM_24485 PF13646 HEAT repeats RAM_24500 PF01457 Leishmanolysin RAM_24515 PF10282 Lactonase, 7-bladed beta-propeller RAM_24520 PF00652 Ricin-type beta-trefoil lectin domain RAM_24520 PF03664 Glycosyl hydrolase family 62 RAM_24525 PF12697 Alpha/beta hydrolase family RAM_24530 PF00067 Cytochrome P450 RAM_24535 PF04672 S-adenosyl methyltransferase RAM_24540 PF12802 MarR family RAM_24545 PF12697 Alpha/beta hydrolase family RAM_24550 PF12706 Beta-lactamase superfamily domain RAM_24555 PF03992 Antibiotic biosynthesis monooxygenase RAM_24560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_24560 PF07730 Histidine kinase RAM_24565 PF00072 Response regulator receiver domain RAM_24565 PF00196 Bacterial regulatory proteins, luxR family RAM_24570 PF00196 Bacterial regulatory proteins, luxR family RAM_24580 PF00092 von Willebrand factor type A domain RAM_24580 PF07676 WD40-like Beta Propeller Repeat RAM_24595 PF04865 RAM_24595 RAM_24595 PF09684 RAM_24595 RAM_24600 PF04965 Gene 25-like lysozyme RAM_24605 PF05488 PAAR motif RAM_24610 PF05954 Phage late control gene D protein (GPD) RAM_24615 PF01476 LysM domain RAM_24620 PF06841 RAM_24620 RAM_24645 PF06841 RAM_24645 RAM_24650 PF04984 Phage tail sheath protein RAM_24650 PF17482 RAM_24650 RAM_24660 PF13699 RAM_24660 RAM_24665 PF00004 ATPase family associated with various cellular activities (AAA) RAM_24670 PF14065 RAM_24670 RAM_24680 PF13229 Right handed beta helix region RAM_24690 PF01979 Amidohydrolase family RAM_24695 PF01614 Bacterial transcriptional regulator RAM_24695 PF09339 IclR helix-turn-helix domain RAM_24700 PF02515 CoA-transferase family III RAM_24705 PF00285 Citrate synthase RAM_24710 PF00775 Dioxygenase RAM_24710 PF04444 Catechol dioxygenase N terminus RAM_24715 PF00107 Zinc-binding dehydrogenase RAM_24725 PF02627 Carboxymuconolactone decarboxylase family RAM_24730 PF00704 Glycosyl hydrolases family 18 RAM_24730 PF02018 Carbohydrate binding domain RAM_24740 PF00005 ABC transporter RAM_24745 PF00005 ABC transporter RAM_24750 PF01494 FAD binding domain RAM_24755 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_24760 PF00106 short chain dehydrogenase RAM_24765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_24765 PF03466 LysR substrate binding domain RAM_24770 PF00581 Rhodanese-like domain RAM_24775 PF02525 Flavodoxin-like fold RAM_24780 PF00440 Bacterial regulatory proteins, tetR family RAM_24785 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_24800 PF01037 AsnC family RAM_24800 PF13404 AsnC-type helix-turn-helix domain RAM_24805 PF00557 Metallopeptidase family M24 RAM_24805 PF01321 Creatinase/Prolidase N-terminal domain RAM_24810 PF01367 5'-3' exonuclease, C-terminal SAM fold RAM_24810 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RAM_24815 PF13527 Acetyltransferase (GNAT) domain RAM_24815 PF13530 Sterol carrier protein domain RAM_24820 PF13527 Acetyltransferase (GNAT) domain RAM_24820 PF13530 Sterol carrier protein domain RAM_24825 PF14230 RAM_24825 RAM_24830 PF00270 DEAD/DEAH box helicase RAM_24830 PF00271 Helicase conserved C-terminal domain RAM_24830 PF08148 DSHCT (NUC185) domain RAM_24830 PF13234 rRNA-processing arch domain RAM_24840 PF00781 Diacylglycerol kinase catalytic domain RAM_24845 PF00902 Sec-independent protein translocase protein (TatC) RAM_24850 PF02416 mttA/Hcf106 family RAM_24860 PF13280 RAM_24860 RAM_24865 PF13280 RAM_24865 RAM_24870 PF01638 HxlR-like helix-turn-helix RAM_24875 PF13602 Zinc-binding dehydrogenase RAM_24880 PF00106 short chain dehydrogenase RAM_24890 PF03136 Pup-ligase protein RAM_24895 PF00781 Diacylglycerol kinase catalytic domain RAM_24895 PF01569 PAP2 superfamily RAM_24900 PF00756 Putative esterase RAM_24905 PF00227 Proteasome subunit RAM_24910 PF00227 Proteasome subunit RAM_24915 PF05639 Pup-like protein RAM_24920 PF03136 Pup-ligase protein RAM_24925 PF00293 NUDIX domain RAM_24935 PF00248 Aldo/keto reductase family RAM_24945 PF12840 Helix-turn-helix domain RAM_24950 PF00296 Luciferase-like monooxygenase RAM_24955 PF12294 RAM_24955 RAM_24960 PF00892 EamA-like transporter family RAM_24965 PF00004 ATPase family associated with various cellular activities (AAA) RAM_24965 PF16450 RAM_24965 RAM_24980 PF00805 Pentapeptide repeats (8 copies) RAM_24985 PF08704 tRNA methyltransferase complex GCD14 subunit RAM_24985 PF14801 tRNA methyltransferase complex GCD14 subunit N-term RAM_24990 PF02163 Peptidase family M50 RAM_24995 PF12705 PD-(D/E)XK nuclease superfamily RAM_25000 PF13622 Thioesterase-like superfamily RAM_25005 PF13614 AAA domain RAM_25010 PF01634 ATP phosphoribosyltransferase RAM_25010 PF08029 HisG, C-terminal domain RAM_25015 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RAM_25020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RAM_25020 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RAM_25025 PF02805 Metal binding domain of Ada RAM_25025 PF06029 AlkA N-terminal domain RAM_25025 PF12833 Helix-turn-helix domain RAM_25030 PF13419 Haloacid dehalogenase-like hydrolase RAM_25035 PF00809 Pterin binding enzyme RAM_25035 PF02310 B12 binding domain RAM_25035 PF02574 Homocysteine S-methyltransferase RAM_25035 PF02607 B12 binding domain RAM_25035 PF02965 Vitamin B12 dependent methionine synthase, activation domain RAM_25045 PF09754 PAC2 family RAM_25050 PF02126 Phosphotriesterase family RAM_25055 PF07336 Protein of unknown function (DUF1470) RAM_25055 PF11706 CGNR zinc finger RAM_25060 PF00149 Calcineurin-like phosphoesterase RAM_25070 PF00144 Beta-lactamase RAM_25075 PF07690 Major Facilitator Superfamily RAM_25080 PF12840 Helix-turn-helix domain RAM_25085 PF12802 MarR family RAM_25090 PF00005 ABC transporter RAM_25095 PF01406 tRNA synthetases class I (C) catalytic domain RAM_25100 PF00376 MerR family regulatory protein RAM_25100 PF07739 TipAS antibiotic-recognition domain RAM_25100 PF09278 MerR, DNA binding RAM_25105 PF01979 Amidohydrolase family RAM_25115 PF00158 Sigma-54 interaction domain RAM_25135 PF00762 Ferrochelatase RAM_25140 PF00440 Bacterial regulatory proteins, tetR family RAM_25140 PF13977 Bacterial transcriptional repressor RAM_25145 PF07690 Major Facilitator Superfamily RAM_25150 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_25155 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_25160 PF07690 Major Facilitator Superfamily RAM_25165 PF00072 Response regulator receiver domain RAM_25165 PF00486 Transcriptional regulatory protein, C terminal RAM_25170 PF00512 His Kinase A (phospho-acceptor) domain RAM_25170 PF00672 HAMP domain RAM_25170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_25175 PF16868 RAM_25175 RAM_25180 PF03061 Thioesterase superfamily RAM_25185 PF00588 SpoU rRNA Methylase family RAM_25195 PF07584 RAM_25195 RAM_25195 PF13519 von Willebrand factor type A domain RAM_25200 PF01882 RAM_25200 RAM_25205 PF07726 ATPase family associated with various cellular activities (AAA) RAM_25210 PF12804 MobA-like NTP transferase domain RAM_25215 PF13649 Methyltransferase domain RAM_25220 PF00877 NlpC/P60 family RAM_25225 PF00330 Aconitase family (aconitate hydratase) RAM_25225 PF00694 Aconitase C-terminal domain RAM_25230 PF02308 RAM_25230 RAM_25235 PF00561 alpha/beta hydrolase fold RAM_25240 PF00440 Bacterial regulatory proteins, tetR family RAM_25245 PF00561 alpha/beta hydrolase fold RAM_25245 PF08386 TAP-like protein RAM_25250 PF04075 Domain of unknown function (DUF385) RAM_25255 PF10017 RAM_25255 RAM_25260 PF13522 Glutamine amidotransferase domain RAM_25265 PF03781 Sulfatase-modifying factor enzyme 1 RAM_25265 PF12867 DinB superfamily RAM_25270 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_25275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_25275 PF03466 LysR substrate binding domain RAM_25280 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_25280 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RAM_25285 PF00561 alpha/beta hydrolase fold RAM_25290 PF14011 EspG family RAM_25300 PF12079 RAM_25300 RAM_25310 PF00440 Bacterial regulatory proteins, tetR family RAM_25315 PF00571 CBS domain RAM_25315 PF01595 RAM_25315 RAM_25315 PF03471 Transporter associated domain RAM_25320 PF00571 CBS domain RAM_25320 PF01595 RAM_25320 RAM_25335 PF00248 Aldo/keto reductase family RAM_25340 PF13560 Helix-turn-helix domain RAM_25345 PF12680 SnoaL-like domain RAM_25350 PF01370 NAD dependent epimerase/dehydratase family RAM_25355 PF04138 RAM_25355 RAM_25360 PF00535 Glycosyl transferase family 2 RAM_25365 PF01370 NAD dependent epimerase/dehydratase family RAM_25370 PF02347 Glycine cleavage system P-protein RAM_25375 PF13411 MerR HTH family regulatory protein RAM_25380 PF00440 Bacterial regulatory proteins, tetR family RAM_25385 PF00085 Thioredoxin RAM_25390 PF13411 MerR HTH family regulatory protein RAM_25395 PF02577 Bifunctional nuclease RAM_25400 PF00376 MerR family regulatory protein RAM_25405 PF00498 FHA domain RAM_25410 PF01597 Glycine cleavage H-protein RAM_25415 PF01066 CDP-alcohol phosphatidyltransferase RAM_25435 PF00501 AMP-binding enzyme RAM_25435 PF13193 AMP-binding enzyme C-terminal domain RAM_25440 PF00378 Enoyl-CoA hydratase/isomerase family RAM_25445 PF00561 alpha/beta hydrolase fold RAM_25450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_25450 PF13241 Putative NAD(P)-binding RAM_25455 PF13203 RAM_25455 RAM_25460 PF07728 AAA domain (dynein-related subfamily) RAM_25465 PF00253 Ribosomal protein S14p/S29e RAM_25470 PF00471 Ribosomal protein L33 RAM_25480 PF01197 Ribosomal protein L31 RAM_25485 PF01783 Ribosomal L32p protein family RAM_25495 PF01047 MarR family RAM_25500 PF07690 Major Facilitator Superfamily RAM_25505 PF01738 Dienelactone hydrolase family RAM_25515 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_25520 PF13347 MFS/sugar transport protein RAM_25525 PF00296 Luciferase-like monooxygenase RAM_25530 PF09995 RAM_25530 RAM_25535 PF00440 Bacterial regulatory proteins, tetR family RAM_25540 PF01614 Bacterial transcriptional regulator RAM_25540 PF09339 IclR helix-turn-helix domain RAM_25550 PF14344 RAM_25550 RAM_25555 PF04203 Sortase family RAM_25560 PF00296 Luciferase-like monooxygenase RAM_25565 PF13379 NMT1-like family RAM_25570 PF00005 ABC transporter RAM_25575 PF00528 Binding-protein-dependent transport system inner membrane component RAM_25580 PF00753 Metallo-beta-lactamase superfamily RAM_25585 PF01409 tRNA synthetases class II core domain (F) RAM_25585 PF03147 Ferredoxin-fold anticodon binding domain RAM_25595 PF04978 Protein of unknown function (DUF664) RAM_25605 PF00005 ABC transporter RAM_25605 PF00664 ABC transporter transmembrane region RAM_25610 PF00005 ABC transporter RAM_25610 PF00664 ABC transporter transmembrane region RAM_25615 PF03621 MbtH-like protein RAM_25620 PF01497 Periplasmic binding protein RAM_25625 PF02261 Aspartate decarboxylase RAM_25630 PF00501 AMP-binding enzyme RAM_25630 PF00550 Phosphopantetheine attachment site RAM_25630 PF00668 Condensation domain RAM_25630 PF08241 Methyltransferase domain RAM_25630 PF08242 Methyltransferase domain RAM_25630 PF13193 AMP-binding enzyme C-terminal domain RAM_25635 PF01032 FecCD transport family RAM_25640 PF01032 FecCD transport family RAM_25645 PF00005 ABC transporter RAM_25650 PF04978 Protein of unknown function (DUF664) RAM_25655 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) RAM_25660 PF00551 Formyl transferase RAM_25660 PF02911 Formyl transferase, C-terminal domain RAM_25670 PF02065 Melibiase RAM_25670 PF16874 RAM_25670 RAM_25670 PF16875 RAM_25670 RAM_25675 PF13416 Bacterial extracellular solute-binding protein RAM_25680 PF00528 Binding-protein-dependent transport system inner membrane component RAM_25685 PF00528 Binding-protein-dependent transport system inner membrane component RAM_25690 PF00005 ABC transporter RAM_25695 PF07848 PaaX-like protein RAM_25695 PF08223 PaaX-like protein C-terminal domain RAM_25700 PF00378 Enoyl-CoA hydratase/isomerase family RAM_25705 PF00041 Fibronectin type III domain RAM_25705 PF00553 Cellulose binding domain RAM_25705 PF00704 Glycosyl hydrolases family 18 RAM_25710 PF00589 Phage integrase family RAM_25715 PF01527 Transposase RAM_25720 PF00665 Integrase core domain RAM_25720 PF13276 RAM_25720 RAM_25725 PF00931 NB-ARC domain RAM_25725 PF13271 RAM_25725 RAM_25730 PF13586 RAM_25730 RAM_25735 PF13340 RAM_25735 RAM_25740 PF13374 Tetratricopeptide repeat RAM_25740 PF13424 Tetratricopeptide repeat RAM_25745 PF13374 Tetratricopeptide repeat RAM_25745 PF13424 Tetratricopeptide repeat RAM_25750 PF00589 Phage integrase family RAM_25770 PF00656 Caspase domain RAM_25780 PF00149 Calcineurin-like phosphoesterase RAM_25780 PF16656 RAM_25780 RAM_25785 PF00722 Glycosyl hydrolases family 16 RAM_25790 PF00331 Glycosyl hydrolase family 10 RAM_25795 PF00480 ROK family RAM_25795 PF12802 MarR family RAM_25800 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_25800 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_25805 PF00041 Fibronectin type III domain RAM_25805 PF00553 Cellulose binding domain RAM_25805 PF00703 Glycosyl hydrolases family 2 RAM_25810 PF00553 Cellulose binding domain RAM_25810 PF01270 Glycosyl hydrolases family 8 RAM_25815 PF01261 Xylose isomerase-like TIM barrel RAM_25820 PF01261 Xylose isomerase-like TIM barrel RAM_25825 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_25825 PF13378 Enolase C-terminal domain-like RAM_25830 PF00356 Bacterial regulatory proteins, lacI family RAM_25830 PF13377 Periplasmic binding protein-like domain RAM_25835 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_25835 PF13378 Enolase C-terminal domain-like RAM_25840 PF00528 Binding-protein-dependent transport system inner membrane component RAM_25845 PF09084 NMT1/THI5 like RAM_25850 PF00005 ABC transporter RAM_25855 PF00512 His Kinase A (phospho-acceptor) domain RAM_25855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_25860 PF00072 Response regulator receiver domain RAM_25860 PF00486 Transcriptional regulatory protein, C terminal RAM_25865 PF09362 RAM_25865 RAM_25875 PF13463 Winged helix DNA-binding domain RAM_25880 PF00561 alpha/beta hydrolase fold RAM_25885 PF07690 Major Facilitator Superfamily RAM_25890 PF01047 MarR family RAM_25895 PF00230 Major intrinsic protein RAM_25905 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_25905 PF00355 Rieske [2Fe-2S] domain RAM_25905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_25905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_25910 PF00326 Prolyl oligopeptidase family RAM_25915 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_25920 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_25920 PF10370 Domain of unknown function (DUF2437) RAM_25925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_25930 PF01494 FAD binding domain RAM_25935 PF04199 Putative cyclase RAM_25940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_25940 PF03466 LysR substrate binding domain RAM_25945 PF07690 Major Facilitator Superfamily RAM_25950 PF00005 ABC transporter RAM_25955 PF02653 RAM_25955 RAM_25960 PF13407 Periplasmic binding protein domain RAM_25970 PF04542 Sigma-70 region 2 RAM_25970 PF08281 Sigma-70, region 4 RAM_25975 PF00082 Subtilase family RAM_25975 PF09286 Pro-kumamolisin, activation domain RAM_25980 PF06689 ClpX C4-type zinc finger RAM_25990 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_26000 PF01183 Glycosyl hydrolases family 25 RAM_26005 PF04055 Radical SAM superfamily RAM_26010 PF00534 Glycosyl transferases group 1 RAM_26010 PF00535 Glycosyl transferase family 2 RAM_26020 PF05592 Bacterial alpha-L-rhamnosidase RAM_26020 PF08531 Alpha-L-rhamnosidase N-terminal domain RAM_26020 PF13364 Beta-galactosidase jelly roll domain RAM_26020 PF17389 RAM_26020 RAM_26020 PF17390 RAM_26020 RAM_26025 PF00067 Cytochrome P450 RAM_26035 PF00999 Sodium/hydrogen exchanger family RAM_26040 PF05532 CsbD-like RAM_26045 PF00106 short chain dehydrogenase RAM_26050 PF13560 Helix-turn-helix domain RAM_26055 PF00009 Elongation factor Tu GTP binding domain RAM_26055 PF09107 Elongation factor SelB, winged helix RAM_26060 PF03841 L-seryl-tRNA selenium transferase RAM_26060 PF12390 RAM_26060 RAM_26070 PF00586 AIR synthase related protein, N-terminal domain RAM_26070 PF02769 AIR synthase related protein, C-terminal domain RAM_26075 PF11387 RAM_26075 RAM_26085 PF00857 Isochorismatase family RAM_26090 PF13354 Beta-lactamase enzyme family RAM_26095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_26100 PF13354 Beta-lactamase enzyme family RAM_26105 PF02525 Flavodoxin-like fold RAM_26115 PF13556 PucR C-terminal helix-turn-helix domain RAM_26120 PF12697 Alpha/beta hydrolase family RAM_26125 PF01494 FAD binding domain RAM_26130 PF00440 Bacterial regulatory proteins, tetR family RAM_26130 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_26135 PF07681 RAM_26135 RAM_26140 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_26150 PF08291 Peptidase M15 RAM_26155 PF12697 Alpha/beta hydrolase family RAM_26160 PF00440 Bacterial regulatory proteins, tetR family RAM_26165 PF01872 RibD C-terminal domain RAM_26170 PF00089 Trypsin RAM_26170 PF02983 Alpha-lytic protease prodomain RAM_26185 PF14013 RAM_26185 RAM_26190 PF04892 RAM_26190 RAM_26190 PF06271 RAM_26190 RAM_26205 PF07228 Stage II sporulation protein E (SpoIIE) RAM_26215 PF03176 MMPL family RAM_26220 PF12802 MarR family RAM_26230 PF14273 RAM_26230 RAM_26235 PF01564 Spermine/spermidine synthase RAM_26240 PF02675 S-adenosylmethionine decarboxylase RAM_26245 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_26245 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_26250 PF08760 RAM_26250 RAM_26250 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_26250 PF16334 RAM_26250 RAM_26250 PF16335 RAM_26250 RAM_26250 PF17168 RAM_26250 RAM_26260 PF08980 Domain of unknown function (DUF1883) RAM_26270 PF01047 MarR family RAM_26285 PF14216 RAM_26285 RAM_26290 PF13466 STAS domain RAM_26295 PF00072 Response regulator receiver domain RAM_26300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_26300 PF07730 Histidine kinase RAM_26300 PF13426 PAS domain RAM_26310 PF00072 Response regulator receiver domain RAM_26310 PF00196 Bacterial regulatory proteins, luxR family RAM_26320 PF03737 Demethylmenaquinone methyltransferase RAM_26325 PF03091 CutA1 divalent ion tolerance protein RAM_26330 PF00012 Hsp70 protein RAM_26340 PF01926 50S ribosome-binding GTPase RAM_26345 PF00350 Dynamin family RAM_26355 PF00196 Bacterial regulatory proteins, luxR family RAM_26355 PF13191 AAA ATPase domain RAM_26365 PF01494 FAD binding domain RAM_26370 PF00809 Pterin binding enzyme RAM_26370 PF02310 B12 binding domain RAM_26370 PF02574 Homocysteine S-methyltransferase RAM_26370 PF02607 B12 binding domain RAM_26370 PF02965 Vitamin B12 dependent methionine synthase, activation domain RAM_26375 PF00296 Luciferase-like monooxygenase RAM_26380 PF00083 Sugar (and other) transporter RAM_26385 PF00553 Cellulose binding domain RAM_26390 PF00107 Zinc-binding dehydrogenase RAM_26390 PF08240 Alcohol dehydrogenase GroES-like domain RAM_26400 PF02627 Carboxymuconolactone decarboxylase family RAM_26405 PF03756 RAM_26405 RAM_26415 PF00553 Cellulose binding domain RAM_26420 PF00248 Aldo/keto reductase family RAM_26425 PF07221 N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase) RAM_26430 PF00553 Cellulose binding domain RAM_26430 PF03067 Chitin binding domain RAM_26435 PF00356 Bacterial regulatory proteins, lacI family RAM_26435 PF13377 Periplasmic binding protein-like domain RAM_26440 PF13416 Bacterial extracellular solute-binding protein RAM_26445 PF00553 Cellulose binding domain RAM_26445 PF01341 Glycosyl hydrolases family 6 RAM_26450 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_26450 PF00553 Cellulose binding domain RAM_26455 PF00553 Cellulose binding domain RAM_26455 PF02011 Glycosyl hydrolase family 48 RAM_26460 PF00356 Bacterial regulatory proteins, lacI family RAM_26460 PF13377 Periplasmic binding protein-like domain RAM_26465 PF13416 Bacterial extracellular solute-binding protein RAM_26470 PF00528 Binding-protein-dependent transport system inner membrane component RAM_26475 PF00528 Binding-protein-dependent transport system inner membrane component RAM_26480 PF00232 Glycosyl hydrolase family 1 RAM_26485 PF00920 Dehydratase family RAM_26490 PF11239 RAM_26490 RAM_26495 PF00571 CBS domain RAM_26500 PF03167 Uracil DNA glycosylase superfamily RAM_26510 PF01068 ATP dependent DNA ligase domain RAM_26510 PF04679 ATP dependent DNA ligase C terminal region RAM_26515 PF02735 Ku70/Ku80 beta-barrel domain RAM_26530 PF03861 ANTAR domain RAM_26530 PF13185 GAF domain RAM_26535 PF13466 STAS domain RAM_26540 PF00296 Luciferase-like monooxygenase RAM_26555 PF04539 Sigma-70 region 3 RAM_26555 PF04542 Sigma-70 region 2 RAM_26555 PF04545 Sigma-70, region 4 RAM_26560 PF01928 CYTH domain RAM_26560 PF05235 CHAD domain RAM_26570 PF03861 ANTAR domain RAM_26570 PF13185 GAF domain RAM_26580 PF03364 Polyketide cyclase / dehydrase and lipid transport RAM_26585 PF07332 RAM_26585 RAM_26590 PF12277 RAM_26590 RAM_26595 PF14019 RAM_26595 RAM_26600 PF01740 STAS domain RAM_26605 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_26615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_26615 PF03466 LysR substrate binding domain RAM_26620 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_26620 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_26625 PF13231 RAM_26625 RAM_26630 PF01120 Alpha-L-fucosidase RAM_26630 PF16757 RAM_26630 RAM_26640 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_26645 PF00083 Sugar (and other) transporter RAM_26645 PF07690 Major Facilitator Superfamily RAM_26650 PF13302 Acetyltransferase (GNAT) domain RAM_26660 PF03527 RAM_26660 RAM_26660 PF05593 RAM_26660 RAM_26665 PF02575 YbaB/EbfC DNA-binding family RAM_26670 PF10824 Protein of unknown function (DUF2580) RAM_26685 PF14011 EspG family RAM_26690 PF01844 HNH endonuclease RAM_26690 PF02720 RAM_26690 RAM_26695 PF03050 RAM_26695 RAM_26705 PF01613 Flavin reductase like domain RAM_26710 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_26710 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_26715 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_26715 PF01799 [2Fe-2S] binding domain RAM_26720 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_26720 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_26725 PF01925 RAM_26725 RAM_26730 PF01872 RibD C-terminal domain RAM_26735 PF00754 F5/8 type C domain RAM_26740 PF00356 Bacterial regulatory proteins, lacI family RAM_26740 PF13377 Periplasmic binding protein-like domain RAM_26745 PF00754 F5/8 type C domain RAM_26745 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_26745 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_26745 PF14310 Fibronectin type III-like domain RAM_26750 PF00722 Glycosyl hydrolases family 16 RAM_26750 PF00754 F5/8 type C domain RAM_26755 PF00754 F5/8 type C domain RAM_26760 PF01494 FAD binding domain RAM_26765 PF00753 Metallo-beta-lactamase superfamily RAM_26770 PF01047 MarR family RAM_26775 PF00925 GTP cyclohydrolase II RAM_26780 PF01717 Cobalamin-independent synthase, Catalytic domain RAM_26785 PF11239 RAM_26785 RAM_26790 PF00817 impB/mucB/samB family RAM_26790 PF11799 impB/mucB/samB family C-terminal domain RAM_26795 PF00440 Bacterial regulatory proteins, tetR family RAM_26800 PF11583 P-aminobenzoate N-oxygenase AurF RAM_26805 PF00583 Acetyltransferase (GNAT) family RAM_26810 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RAM_26810 PF05221 S-adenosyl-L-homocysteine hydrolase RAM_26825 PF02735 Ku70/Ku80 beta-barrel domain RAM_26835 PF03029 Conserved hypothetical ATP binding protein RAM_26840 PF05331 RAM_26840 RAM_26845 PF03259 Roadblock/LC7 domain RAM_26850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_26855 PF00440 Bacterial regulatory proteins, tetR family RAM_26860 PF00005 ABC transporter RAM_26860 PF00664 ABC transporter transmembrane region RAM_26865 PF00005 ABC transporter RAM_26865 PF00664 ABC transporter transmembrane region RAM_26870 PF01068 ATP dependent DNA ligase domain RAM_26870 PF13298 DNA polymerase Ligase (LigD) RAM_26875 PF03779 RAM_26875 RAM_26885 PF00486 Transcriptional regulatory protein, C terminal RAM_26885 PF00931 NB-ARC domain RAM_26885 PF03704 Bacterial transcriptional activator domain RAM_26890 PF01965 DJ-1/PfpI family RAM_26895 PF01965 DJ-1/PfpI family RAM_26895 PF12833 Helix-turn-helix domain RAM_26900 PF07907 RAM_26900 RAM_26910 PF00753 Metallo-beta-lactamase superfamily RAM_26915 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_26935 PF00378 Enoyl-CoA hydratase/isomerase family RAM_26940 PF00561 alpha/beta hydrolase fold RAM_26945 PF00196 Bacterial regulatory proteins, luxR family RAM_26950 PF07883 Cupin domain RAM_26955 PF06993 RAM_26955 RAM_26960 PF12802 MarR family RAM_26965 PF01979 Amidohydrolase family RAM_26970 PF02824 TGS domain RAM_26970 PF04607 Region found in RelA / SpoT proteins RAM_26970 PF13291 ACT domain RAM_26970 PF13328 HD domain RAM_26980 PF02355 Protein export membrane protein RAM_26980 PF07549 SecD/SecF GG Motif RAM_26985 PF02355 Protein export membrane protein RAM_26985 PF07549 SecD/SecF GG Motif RAM_26990 PF02699 Preprotein translocase subunit RAM_26995 PF05491 Holliday junction DNA helicase ruvB C-terminus RAM_26995 PF05496 Holliday junction DNA helicase ruvB N-terminus RAM_27000 PF01330 RuvA N terminal domain RAM_27000 PF07499 RuvA, C-terminal domain RAM_27000 PF14520 Helix-hairpin-helix domain RAM_27005 PF02075 Crossover junction endodeoxyribonuclease RuvC RAM_27010 PF06172 Cupin superfamily (DUF985) RAM_27015 PF14081 RAM_27015 RAM_27020 PF01709 Transcriptional regulator RAM_27025 PF01174 SNO glutamine amidotransferase family RAM_27030 PF05437 RAM_27030 RAM_27035 PF03591 RAM_27035 RAM_27040 PF01381 Helix-turn-helix RAM_27045 PF01494 FAD binding domain RAM_27050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_27050 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_27050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_27055 PF00501 AMP-binding enzyme RAM_27055 PF13193 AMP-binding enzyme C-terminal domain RAM_27060 PF00550 Phosphopantetheine attachment site RAM_27065 PF00975 Thioesterase domain RAM_27070 PF01680 SOR/SNZ family RAM_27075 PF01022 Bacterial regulatory protein, arsR family RAM_27080 PF01565 FAD binding domain RAM_27080 PF08031 Berberine and berberine like RAM_27085 PF00009 Elongation factor Tu GTP binding domain RAM_27085 PF00679 Elongation factor G C-terminus RAM_27085 PF03144 Elongation factor Tu domain 2 RAM_27085 PF03764 Elongation factor G, domain IV RAM_27085 PF14492 Elongation Factor G, domain II RAM_27090 PF13478 XdhC Rossmann domain RAM_27110 PF13439 Glycosyltransferase Family 4 RAM_27110 PF13692 Glycosyl transferases group 1 RAM_27115 PF03279 RAM_27115 RAM_27120 PF01066 CDP-alcohol phosphatidyltransferase RAM_27125 PF12802 MarR family RAM_27130 PF01230 HIT domain RAM_27135 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_27135 PF03129 Anticodon binding domain RAM_27135 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RAM_27140 PF00881 Nitroreductase family RAM_27145 PF02397 RAM_27145 RAM_27150 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_27155 PF00589 Phage integrase family RAM_27155 PF14659 Phage integrase, N-terminal SAM-like domain RAM_27160 PF11774 Lsr2 RAM_27165 PF13180 PDZ domain RAM_27165 PF13365 Trypsin-like peptidase domain RAM_27170 PF01434 Peptidase family M41 RAM_27180 PF03773 RAM_27180 RAM_27190 PF05787 Bacterial protein of unknown function (DUF839) RAM_27195 PF00440 Bacterial regulatory proteins, tetR family RAM_27200 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_27205 PF00378 Enoyl-CoA hydratase/isomerase family RAM_27210 PF00501 AMP-binding enzyme RAM_27210 PF13193 AMP-binding enzyme C-terminal domain RAM_27215 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_27215 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_27225 PF01546 Peptidase family M20/M25/M40 RAM_27225 PF07687 Peptidase dimerisation domain RAM_27230 PF01037 AsnC family RAM_27230 PF13404 AsnC-type helix-turn-helix domain RAM_27235 PF12802 MarR family RAM_27240 PF01979 Amidohydrolase family RAM_27250 PF04542 Sigma-70 region 2 RAM_27250 PF08281 Sigma-70, region 4 RAM_27255 PF05199 GMC oxidoreductase RAM_27265 PF01494 FAD binding domain RAM_27270 PF13564 RAM_27270 RAM_27275 PF00501 AMP-binding enzyme RAM_27275 PF13193 AMP-binding enzyme C-terminal domain RAM_27280 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_27285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_27290 PF00440 Bacterial regulatory proteins, tetR family RAM_27295 PF06210 RAM_27295 RAM_27300 PF00440 Bacterial regulatory proteins, tetR family RAM_27315 PF00781 Diacylglycerol kinase catalytic domain RAM_27330 PF00795 Carbon-nitrogen hydrolase RAM_27335 PF13229 Right handed beta helix region RAM_27340 PF04616 Glycosyl hydrolases family 43 RAM_27345 PF10022 RAM_27345 RAM_27350 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_27350 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_27355 PF00528 Binding-protein-dependent transport system inner membrane component RAM_27360 PF00528 Binding-protein-dependent transport system inner membrane component RAM_27365 PF01547 Bacterial extracellular solute-binding protein RAM_27370 PF08220 DeoR-like helix-turn-helix domain RAM_27370 PF13377 Periplasmic binding protein-like domain RAM_27375 PF00743 Flavin-binding monooxygenase-like RAM_27375 PF13450 NAD(P)-binding Rossmann-like domain RAM_27380 PF08450 SMP-30/Gluconolaconase/LRE-like region RAM_27385 PF07690 Major Facilitator Superfamily RAM_27390 PF00106 short chain dehydrogenase RAM_27395 PF00106 short chain dehydrogenase RAM_27400 PF00440 Bacterial regulatory proteins, tetR family RAM_27405 PF00440 Bacterial regulatory proteins, tetR family RAM_27405 PF16859 RAM_27405 RAM_27425 PF00656 Caspase domain RAM_27430 PF10503 Esterase PHB depolymerase RAM_27435 PF14330 RAM_27435 RAM_27440 PF07287 RAM_27440 RAM_27445 PF07690 Major Facilitator Superfamily RAM_27450 PF00392 Bacterial regulatory proteins, gntR family RAM_27450 PF07729 FCD domain RAM_27455 PF09234 Domain of unknown function (DUF1963) RAM_27470 PF00583 Acetyltransferase (GNAT) family RAM_27485 PF05593 RAM_27485 RAM_27490 PF00732 GMC oxidoreductase RAM_27490 PF05199 GMC oxidoreductase RAM_27495 PF00483 Nucleotidyl transferase RAM_27500 PF00501 AMP-binding enzyme RAM_27500 PF00550 Phosphopantetheine attachment site RAM_27500 PF13193 AMP-binding enzyme C-terminal domain RAM_27505 PF00975 Thioesterase domain RAM_27510 PF00550 Phosphopantetheine attachment site RAM_27510 PF00668 Condensation domain RAM_27515 PF00960 Neocarzinostatin family RAM_27520 PF04101 Glycosyltransferase family 28 C-terminal domain RAM_27520 PF06722 Protein of unknown function (DUF1205) RAM_27535 PF00891 O-methyltransferase RAM_27540 PF03559 NDP-hexose 2,3-dehydratase RAM_27545 PF00072 Response regulator receiver domain RAM_27545 PF00196 Bacterial regulatory proteins, luxR family RAM_27550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_27550 PF07730 Histidine kinase RAM_27555 PF01061 RAM_27555 RAM_27560 PF00005 ABC transporter RAM_27565 PF01370 NAD dependent epimerase/dehydratase family RAM_27575 PF00501 AMP-binding enzyme RAM_27575 PF00550 Phosphopantetheine attachment site RAM_27575 PF00668 Condensation domain RAM_27580 PF04101 Glycosyltransferase family 28 C-terminal domain RAM_27580 PF06722 Protein of unknown function (DUF1205) RAM_27585 PF04101 Glycosyltransferase family 28 C-terminal domain RAM_27585 PF06722 Protein of unknown function (DUF1205) RAM_27590 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_27590 PF06722 Protein of unknown function (DUF1205) RAM_27595 PF06722 Protein of unknown function (DUF1205) RAM_27600 PF06722 Protein of unknown function (DUF1205) RAM_27605 PF01061 RAM_27605 RAM_27610 PF00005 ABC transporter RAM_27615 PF08241 Methyltransferase domain RAM_27620 PF06722 Protein of unknown function (DUF1205) RAM_27625 PF06722 Protein of unknown function (DUF1205) RAM_27630 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RAM_27635 PF00486 Transcriptional regulatory protein, C terminal RAM_27635 PF00931 NB-ARC domain RAM_27635 PF03704 Bacterial transcriptional activator domain RAM_27640 PF04101 Glycosyltransferase family 28 C-terminal domain RAM_27640 PF06722 Protein of unknown function (DUF1205) RAM_27645 PF00391 PEP-utilising enzyme, mobile domain RAM_27645 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RAM_27650 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_27650 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_27655 PF04486 RAM_27655 RAM_27660 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_27665 PF08592 RAM_27665 RAM_27670 PF03992 Antibiotic biosynthesis monooxygenase RAM_27675 PF03992 Antibiotic biosynthesis monooxygenase RAM_27680 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_27685 PF08592 RAM_27685 RAM_27690 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_27695 PF00550 Phosphopantetheine attachment site RAM_27700 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_27700 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_27705 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_27705 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_27710 PF07883 Cupin domain RAM_27715 PF04673 Polyketide synthesis cyclase RAM_27720 PF03551 Transcriptional regulator PadR-like family RAM_27725 PF00854 POT family RAM_27730 PF00891 O-methyltransferase RAM_27730 PF16864 RAM_27730 RAM_27735 PF01494 FAD binding domain RAM_27740 PF01494 FAD binding domain RAM_27745 PF13350 Tyrosine phosphatase family RAM_27750 PF00296 Luciferase-like monooxygenase RAM_27755 PF00106 short chain dehydrogenase RAM_27760 PF00067 Cytochrome P450 RAM_27765 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_27770 PF13489 Methyltransferase domain RAM_27775 PF01370 NAD dependent epimerase/dehydratase family RAM_27780 PF01370 NAD dependent epimerase/dehydratase family RAM_27785 PF07676 WD40-like Beta Propeller Repeat RAM_27790 PF00652 Ricin-type beta-trefoil lectin domain RAM_27795 PF13424 Tetratricopeptide repeat RAM_27795 PF13560 Helix-turn-helix domain RAM_27800 PF05593 RAM_27800 RAM_27820 PF09851 RAM_27820 RAM_27825 PF12840 Helix-turn-helix domain RAM_27830 PF00916 RAM_27830 RAM_27830 PF01740 STAS domain RAM_27835 PF07681 RAM_27835 RAM_27845 PF00582 Universal stress protein family RAM_27860 PF00582 Universal stress protein family RAM_27865 PF00122 E1-E2 ATPase RAM_27865 PF00689 Cation transporting ATPase, C-terminus RAM_27865 PF00690 Cation transporter/ATPase, N-terminus RAM_27865 PF00702 haloacid dehalogenase-like hydrolase RAM_27880 PF00871 Acetokinase family RAM_27885 PF00583 Acetyltransferase (GNAT) family RAM_27885 PF13380 CoA binding domain RAM_27885 PF13549 ATP-grasp domain RAM_27885 PF13607 Succinyl-CoA ligase like flavodoxin domain RAM_27890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_27890 PF07730 Histidine kinase RAM_27890 PF13185 GAF domain RAM_27890 PF13492 GAF domain RAM_27895 PF00881 Nitroreductase family RAM_27900 PF00072 Response regulator receiver domain RAM_27900 PF00196 Bacterial regulatory proteins, luxR family RAM_27905 PF01654 RAM_27905 RAM_27910 PF02322 RAM_27910 RAM_27915 PF00005 ABC transporter RAM_27915 PF00664 ABC transporter transmembrane region RAM_27920 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase RAM_27920 PF09363 XFP C-terminal domain RAM_27920 PF09364 XFP N-terminal domain RAM_27925 PF00582 Universal stress protein family RAM_27930 PF00571 CBS domain RAM_27935 PF00582 Universal stress protein family RAM_27940 PF08940 Domain of unknown function (DUF1918) RAM_27945 PF00571 CBS domain RAM_27945 PF04972 BON domain RAM_27950 PF00582 Universal stress protein family RAM_27980 PF12900 Pyridoxamine 5'-phosphate oxidase RAM_27990 PF07730 Histidine kinase RAM_27995 PF00072 Response regulator receiver domain RAM_27995 PF00196 Bacterial regulatory proteins, luxR family RAM_28000 PF03861 ANTAR domain RAM_28000 PF13185 GAF domain RAM_28005 PF02517 CAAX protease self-immunity RAM_28015 PF00072 Response regulator receiver domain RAM_28020 PF07883 Cupin domain RAM_28025 PF00440 Bacterial regulatory proteins, tetR family RAM_28035 PF03033 Glycosyltransferase family 28 N-terminal domain RAM_28040 PF12802 MarR family RAM_28045 PF00753 Metallo-beta-lactamase superfamily RAM_28050 PF12680 SnoaL-like domain RAM_28055 PF12680 SnoaL-like domain RAM_28060 PF13343 Bacterial extracellular solute-binding protein RAM_28065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_28065 PF07730 Histidine kinase RAM_28070 PF00072 Response regulator receiver domain RAM_28070 PF00196 Bacterial regulatory proteins, luxR family RAM_28080 PF13229 Right handed beta helix region RAM_28085 PF00392 Bacterial regulatory proteins, gntR family RAM_28095 PF13671 AAA domain RAM_28100 PF08386 TAP-like protein RAM_28105 PF00717 Peptidase S24-like RAM_28105 PF10502 Signal peptidase, peptidase S26 RAM_28110 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_28120 PF00300 Histidine phosphatase superfamily (branch 1) RAM_28130 PF01527 Transposase RAM_28135 PF00665 Integrase core domain RAM_28135 PF13276 RAM_28135 RAM_28140 PF03534 Salmonella virulence plasmid 65kDa B protein RAM_28140 PF05593 RAM_28140 RAM_28140 PF07591 Pretoxin HINT domain RAM_28145 PF13385 Concanavalin A-like lectin/glucanases superfamily RAM_28150 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_28155 PF00067 Cytochrome P450 RAM_28160 PF01636 Phosphotransferase enzyme family RAM_28165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_28175 PF00296 Luciferase-like monooxygenase RAM_28180 PF01019 Gamma-glutamyltranspeptidase RAM_28185 PF00990 GGDEF domain RAM_28195 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_28200 PF00106 short chain dehydrogenase RAM_28210 PF07690 Major Facilitator Superfamily RAM_28220 PF00583 Acetyltransferase (GNAT) family RAM_28220 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_28225 PF13474 SnoaL-like domain RAM_28230 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_28235 PF00535 Glycosyl transferase family 2 RAM_28235 PF02709 N-terminal domain of galactosyltransferase RAM_28240 PF00535 Glycosyl transferase family 2 RAM_28245 PF00005 ABC transporter RAM_28250 PF00005 ABC transporter RAM_28255 PF05988 RAM_28255 RAM_28260 PF10067 RAM_28260 RAM_28265 PF04672 S-adenosyl methyltransferase RAM_28275 PF06441 Epoxide hydrolase N terminus RAM_28280 PF07859 alpha/beta hydrolase fold RAM_28295 PF10824 Protein of unknown function (DUF2580) RAM_28300 PF02575 YbaB/EbfC DNA-binding family RAM_28305 PF00067 Cytochrome P450 RAM_28310 PF00067 Cytochrome P450 RAM_28315 PF08546 Ketopantoate reductase PanE/ApbA C terminal RAM_28325 PF01614 Bacterial transcriptional regulator RAM_28325 PF09339 IclR helix-turn-helix domain RAM_28330 PF00083 Sugar (and other) transporter RAM_28345 PF00931 NB-ARC domain RAM_28345 PF13424 Tetratricopeptide repeat RAM_28355 PF03551 Transcriptional regulator PadR-like family RAM_28365 PF03861 ANTAR domain RAM_28380 PF00704 Glycosyl hydrolases family 18 RAM_28390 PF12802 MarR family RAM_28395 PF03358 NADPH-dependent FMN reductase RAM_28400 PF04909 Amidohydrolase RAM_28410 PF01590 GAF domain RAM_28410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_28410 PF07730 Histidine kinase RAM_28410 PF13185 GAF domain RAM_28420 PF00072 Response regulator receiver domain RAM_28420 PF00196 Bacterial regulatory proteins, luxR family RAM_28425 PF04972 BON domain RAM_28430 PF01145 SPFH domain / Band 7 family RAM_28445 PF00156 Phosphoribosyl transferase domain RAM_28450 PF03861 ANTAR domain RAM_28450 PF13185 GAF domain RAM_28455 PF03861 ANTAR domain RAM_28455 PF13185 GAF domain RAM_28480 PF00487 RAM_28480 RAM_28500 PF01594 RAM_28500 RAM_28505 PF13466 STAS domain RAM_28520 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_28535 PF09363 XFP C-terminal domain RAM_28540 PF09363 XFP C-terminal domain RAM_28545 PF01734 Patatin-like phospholipase RAM_28550 PF04909 Amidohydrolase RAM_28560 PF00440 Bacterial regulatory proteins, tetR family RAM_28565 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_28565 PF14498 Glycosyl hydrolase family 65, N-terminal domain RAM_28570 PF08044 RAM_28570 RAM_28575 PF00072 Response regulator receiver domain RAM_28575 PF00486 Transcriptional regulatory protein, C terminal RAM_28580 PF00512 His Kinase A (phospho-acceptor) domain RAM_28580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_28585 PF06197 RAM_28585 RAM_28590 PF00534 Glycosyl transferases group 1 RAM_28590 PF13439 Glycosyltransferase Family 4 RAM_28595 PF01494 FAD binding domain RAM_28600 PF03682 RAM_28600 RAM_28630 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_28635 PF00440 Bacterial regulatory proteins, tetR family RAM_28645 PF08281 Sigma-70, region 4 RAM_28650 PF04542 Sigma-70 region 2 RAM_28655 PF03795 YCII-related domain RAM_28660 PF12840 Helix-turn-helix domain RAM_28665 PF13419 Haloacid dehalogenase-like hydrolase RAM_28675 PF00703 Glycosyl hydrolases family 2 RAM_28675 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_28675 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_28675 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_28680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_28680 PF03466 LysR substrate binding domain RAM_28685 PF00106 short chain dehydrogenase RAM_28690 PF03807 NADP oxidoreductase coenzyme F420-dependent RAM_28705 PF00440 Bacterial regulatory proteins, tetR family RAM_28715 PF00106 short chain dehydrogenase RAM_28720 PF00069 Protein kinase domain RAM_28720 PF00553 Cellulose binding domain RAM_28725 PF04542 Sigma-70 region 2 RAM_28725 PF08281 Sigma-70, region 4 RAM_28730 PF04072 Leucine carboxyl methyltransferase RAM_28740 PF00067 Cytochrome P450 RAM_28745 PF14099 Polysaccharide lyase RAM_28750 PF00067 Cytochrome P450 RAM_28755 PF01494 FAD binding domain RAM_28760 PF12802 MarR family RAM_28785 PF06441 Epoxide hydrolase N terminus RAM_28790 PF06441 Epoxide hydrolase N terminus RAM_28795 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_28800 PF00156 Phosphoribosyl transferase domain RAM_28805 PF12697 Alpha/beta hydrolase family RAM_28810 PF00196 Bacterial regulatory proteins, luxR family RAM_28810 PF13191 AAA ATPase domain RAM_28815 PF00196 Bacterial regulatory proteins, luxR family RAM_28815 PF13191 AAA ATPase domain RAM_28820 PF00106 short chain dehydrogenase RAM_28845 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_28850 PF07690 Major Facilitator Superfamily RAM_28855 PF00440 Bacterial regulatory proteins, tetR family RAM_28860 PF00196 Bacterial regulatory proteins, luxR family RAM_28870 PF05685 Putative restriction endonuclease RAM_28875 PF00005 ABC transporter RAM_28880 PF04203 Sortase family RAM_28900 PF16640 RAM_28900 RAM_28915 PF12849 PBP superfamily domain RAM_28920 PF00528 Binding-protein-dependent transport system inner membrane component RAM_28925 PF00528 Binding-protein-dependent transport system inner membrane component RAM_28930 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RAM_28935 PF00512 His Kinase A (phospho-acceptor) domain RAM_28935 PF00672 HAMP domain RAM_28935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_28940 PF00072 Response regulator receiver domain RAM_28940 PF00486 Transcriptional regulatory protein, C terminal RAM_28945 PF00535 Glycosyl transferase family 2 RAM_28945 PF04138 RAM_28945 RAM_28950 PF13231 RAM_28950 RAM_28955 PF00440 Bacterial regulatory proteins, tetR family RAM_28960 PF07690 Major Facilitator Superfamily RAM_28965 PF01494 FAD binding domain RAM_28970 PF00440 Bacterial regulatory proteins, tetR family RAM_28980 PF13377 Periplasmic binding protein-like domain RAM_28985 PF00440 Bacterial regulatory proteins, tetR family RAM_28990 PF00440 Bacterial regulatory proteins, tetR family RAM_28995 PF13546 RAM_28995 RAM_29000 PF12697 Alpha/beta hydrolase family RAM_29005 PF00440 Bacterial regulatory proteins, tetR family RAM_29010 PF06772 RAM_29010 RAM_29015 PF00561 alpha/beta hydrolase fold RAM_29015 PF08386 TAP-like protein RAM_29020 PF13340 RAM_29020 RAM_29025 PF01609 Transposase DDE domain RAM_29040 PF03795 YCII-related domain RAM_29045 PF04542 Sigma-70 region 2 RAM_29065 PF00857 Isochorismatase family RAM_29070 PF05368 NmrA-like family RAM_29075 PF00561 alpha/beta hydrolase fold RAM_29075 PF08386 TAP-like protein RAM_29090 PF03992 Antibiotic biosynthesis monooxygenase RAM_29095 PF01494 FAD binding domain RAM_29100 PF00440 Bacterial regulatory proteins, tetR family RAM_29105 PF12680 SnoaL-like domain RAM_29110 PF07883 Cupin domain RAM_29115 PF00743 Flavin-binding monooxygenase-like RAM_29120 PF01614 Bacterial transcriptional regulator RAM_29120 PF09339 IclR helix-turn-helix domain RAM_29125 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_29130 PF07883 Cupin domain RAM_29135 PF00561 alpha/beta hydrolase fold RAM_29140 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RAM_29145 PF00313 'Cold-shock' DNA-binding domain RAM_29155 PF00440 Bacterial regulatory proteins, tetR family RAM_29160 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_29165 PF00106 short chain dehydrogenase RAM_29175 PF03795 YCII-related domain RAM_29180 PF04993 TfoX N-terminal domain RAM_29185 PF00703 Glycosyl hydrolases family 2 RAM_29185 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_29185 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_29185 PF02929 Beta galactosidase small chain RAM_29185 PF13385 Concanavalin A-like lectin/glucanases superfamily RAM_29185 PF16353 RAM_29185 RAM_29190 PF00999 Sodium/hydrogen exchanger family RAM_29190 PF02080 TrkA-C domain RAM_29195 PF03779 RAM_29195 RAM_29200 PF00115 Cytochrome C and Quinol oxidase polypeptide I RAM_29205 PF00355 Rieske [2Fe-2S] domain RAM_29210 PF13631 Cytochrome b(N-terminal)/b6/petB RAM_29225 PF14342 RAM_29225 RAM_29235 PF04075 Domain of unknown function (DUF385) RAM_29240 PF01494 FAD binding domain RAM_29245 PF00440 Bacterial regulatory proteins, tetR family RAM_29250 PF00072 Response regulator receiver domain RAM_29250 PF00486 Transcriptional regulatory protein, C terminal RAM_29255 PF00512 His Kinase A (phospho-acceptor) domain RAM_29255 PF00672 HAMP domain RAM_29255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_29270 PF01638 HxlR-like helix-turn-helix RAM_29275 PF13628 RAM_29275 RAM_29280 PF01047 MarR family RAM_29285 PF00571 CBS domain RAM_29285 PF00654 Voltage gated chloride channel RAM_29295 PF00723 Glycosyl hydrolases family 15 RAM_29300 PF03779 RAM_29300 RAM_29305 PF07332 RAM_29305 RAM_29310 PF14325 RAM_29310 RAM_29320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_29325 PF00384 Molybdopterin oxidoreductase RAM_29325 PF01568 Molydopterin dinucleotide binding domain RAM_29330 PF13247 4Fe-4S dicluster domain RAM_29335 PF03916 RAM_29335 RAM_29345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_29345 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_29345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_29365 PF01226 Formate/nitrite transporter RAM_29375 PF03600 Citrate transporter RAM_29380 PF00571 CBS domain RAM_29385 PF00999 Sodium/hydrogen exchanger family RAM_29400 PF04072 Leucine carboxyl methyltransferase RAM_29415 PF06210 RAM_29415 RAM_29435 PF00941 FAD binding domain in molybdopterin dehydrogenase RAM_29435 PF03450 CO dehydrogenase flavoprotein C-terminal domain RAM_29440 PF01799 [2Fe-2S] binding domain RAM_29445 PF10012 RAM_29445 RAM_29450 PF00248 Aldo/keto reductase family RAM_29455 PF00107 Zinc-binding dehydrogenase RAM_29455 PF08240 Alcohol dehydrogenase GroES-like domain RAM_29460 PF00106 short chain dehydrogenase RAM_29465 PF13560 Helix-turn-helix domain RAM_29470 PF00248 Aldo/keto reductase family RAM_29475 PF13560 Helix-turn-helix domain RAM_29480 PF07883 Cupin domain RAM_29485 PF12682 Flavodoxin RAM_29490 PF13416 Bacterial extracellular solute-binding protein RAM_29495 PF05592 Bacterial alpha-L-rhamnosidase RAM_29495 PF08531 Alpha-L-rhamnosidase N-terminal domain RAM_29495 PF17389 RAM_29495 RAM_29495 PF17390 RAM_29495 RAM_29500 PF00528 Binding-protein-dependent transport system inner membrane component RAM_29505 PF00528 Binding-protein-dependent transport system inner membrane component RAM_29510 PF00356 Bacterial regulatory proteins, lacI family RAM_29510 PF13377 Periplasmic binding protein-like domain RAM_29520 PF13377 Periplasmic binding protein-like domain RAM_29530 PF17389 RAM_29530 RAM_29530 PF17390 RAM_29530 RAM_29540 PF17132 RAM_29540 RAM_29545 PF00196 Bacterial regulatory proteins, luxR family RAM_29550 PF00356 Bacterial regulatory proteins, lacI family RAM_29550 PF13377 Periplasmic binding protein-like domain RAM_29555 PF12680 SnoaL-like domain RAM_29560 PF00753 Metallo-beta-lactamase superfamily RAM_29570 PF12833 Helix-turn-helix domain RAM_29575 PF05592 Bacterial alpha-L-rhamnosidase RAM_29575 PF08531 Alpha-L-rhamnosidase N-terminal domain RAM_29575 PF17389 RAM_29575 RAM_29575 PF17390 RAM_29575 RAM_29580 PF13546 RAM_29580 RAM_29600 PF07508 Recombinase RAM_29605 PF00589 Phage integrase family RAM_29610 PF10935 RAM_29610 RAM_29630 PF00691 OmpA family RAM_29635 PF07721 Tetratricopeptide repeat RAM_29635 PF13424 Tetratricopeptide repeat RAM_29635 PF13432 Tetratricopeptide repeat RAM_29645 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RAM_29655 PF12770 RAM_29655 RAM_29710 PF13340 RAM_29710 RAM_29715 PF13586 RAM_29715 RAM_29730 PF13020 RAM_29730 RAM_29740 PF02371 RAM_29740 RAM_29745 PF13546 RAM_29745 RAM_29750 PF13340 RAM_29750 RAM_29755 PF13586 RAM_29755 RAM_29760 PF04471 Restriction endonuclease RAM_29770 PF08798 CRISPR associated protein RAM_29775 PF09704 CRISPR-associated protein (Cas_Cas5) RAM_29780 PF09344 CT1975-like protein RAM_29785 PF09485 CRISPR-associated protein Cse2 (CRISPR_cse2) RAM_29790 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) RAM_29800 PF00270 DEAD/DEAH box helicase RAM_29805 PF00665 Integrase core domain RAM_29805 PF13276 RAM_29805 RAM_29810 PF01527 Transposase RAM_29840 PF13683 RAM_29840 RAM_29855 PF01609 Transposase DDE domain RAM_29855 PF13613 RAM_29855 RAM_29865 PF00171 Aldehyde dehydrogenase family RAM_29875 PF00400 WD domain, G-beta repeat RAM_29885 PF00239 Resolvase, N terminal domain RAM_29885 PF07508 Recombinase RAM_29885 PF13408 Recombinase zinc beta ribbon domain RAM_29895 PF00553 Cellulose binding domain RAM_29910 PF11354 RAM_29910 RAM_29915 PF00011 Hsp20/alpha crystallin family RAM_29920 PF04075 Domain of unknown function (DUF385) RAM_29930 PF01425 Amidase RAM_29935 PF06445 GyrI-like small molecule binding domain RAM_29935 PF13411 MerR HTH family regulatory protein RAM_29940 PF12840 Helix-turn-helix domain RAM_29945 PF01545 Cation efflux family RAM_29945 PF16916 RAM_29945 RAM_29950 PF13516 Leucine Rich repeat RAM_29955 PF07690 Major Facilitator Superfamily RAM_29960 PF00455 RAM_29960 RAM_29960 PF08220 DeoR-like helix-turn-helix domain RAM_29965 PF00440 Bacterial regulatory proteins, tetR family RAM_29965 PF13977 Bacterial transcriptional repressor RAM_29970 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_29975 PF01261 Xylose isomerase-like TIM barrel RAM_29985 PF04672 S-adenosyl methyltransferase RAM_29995 PF01547 Bacterial extracellular solute-binding protein RAM_30005 PF13768 von Willebrand factor type A domain RAM_30010 PF00069 Protein kinase domain RAM_30010 PF16918 RAM_30010 RAM_30010 PF16919 RAM_30010 RAM_30015 PF13365 Trypsin-like peptidase domain RAM_30020 PF12730 RAM_30020 RAM_30025 PF00005 ABC transporter RAM_30030 PF00392 Bacterial regulatory proteins, gntR family RAM_30035 PF04199 Putative cyclase RAM_30040 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_30040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_30040 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_30045 PF01844 HNH endonuclease RAM_30045 PF02720 RAM_30045 RAM_30050 PF01037 AsnC family RAM_30050 PF13412 Winged helix-turn-helix DNA-binding RAM_30055 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RAM_30055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_30060 PF00072 Response regulator receiver domain RAM_30060 PF00196 Bacterial regulatory proteins, luxR family RAM_30070 PF02525 Flavodoxin-like fold RAM_30075 PF01047 MarR family RAM_30085 PF02517 CAAX protease self-immunity RAM_30090 PF13460 NADH(P)-binding RAM_30095 PF00892 EamA-like transporter family RAM_30100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_30100 PF03466 LysR substrate binding domain RAM_30105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_30110 PF00291 Pyridoxal-phosphate dependent enzyme RAM_30115 PF00296 Luciferase-like monooxygenase RAM_30125 PF00877 NlpC/P60 family RAM_30135 PF11272 RAM_30135 RAM_30150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAM_30150 PF07497 Rho termination factor, RNA-binding domain RAM_30155 PF13581 Histidine kinase-like ATPase domain RAM_30165 PF00331 Glycosyl hydrolase family 10 RAM_30165 PF10503 Esterase PHB depolymerase RAM_30170 PF13560 Helix-turn-helix domain RAM_30175 PF00106 short chain dehydrogenase RAM_30180 PF00106 short chain dehydrogenase RAM_30185 PF01256 Carbohydrate kinase RAM_30190 PF00300 Histidine phosphatase superfamily (branch 1) RAM_30195 PF07228 Stage II sporulation protein E (SpoIIE) RAM_30195 PF13185 GAF domain RAM_30200 PF13466 STAS domain RAM_30205 PF01740 STAS domain RAM_30210 PF07228 Stage II sporulation protein E (SpoIIE) RAM_30210 PF13185 GAF domain RAM_30215 PF13581 Histidine kinase-like ATPase domain RAM_30220 PF00072 Response regulator receiver domain RAM_30220 PF00512 His Kinase A (phospho-acceptor) domain RAM_30220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_30220 PF07228 Stage II sporulation protein E (SpoIIE) RAM_30220 PF08448 PAS fold RAM_30220 PF13581 Histidine kinase-like ATPase domain RAM_30225 PF13466 STAS domain RAM_30230 PF03861 ANTAR domain RAM_30230 PF13185 GAF domain RAM_30235 PF13581 Histidine kinase-like ATPase domain RAM_30240 PF00723 Glycosyl hydrolases family 15 RAM_30240 PF09137 Glucodextranase, domain N RAM_30240 PF09985 Domain of unknown function (DUF2223) RAM_30245 PF04978 Protein of unknown function (DUF664) RAM_30250 PF00248 Aldo/keto reductase family RAM_30255 PF00106 short chain dehydrogenase RAM_30265 PF12697 Alpha/beta hydrolase family RAM_30270 PF05331 RAM_30270 RAM_30280 PF00486 Transcriptional regulatory protein, C terminal RAM_30280 PF00931 NB-ARC domain RAM_30280 PF03704 Bacterial transcriptional activator domain RAM_30280 PF13424 Tetratricopeptide repeat RAM_30285 PF13560 Helix-turn-helix domain RAM_30290 PF02441 Flavoprotein RAM_30315 PF01580 FtsK/SpoIIIE family RAM_30330 PF12728 Helix-turn-helix domain RAM_30340 PF00589 Phage integrase family RAM_30345 PF00171 Aldehyde dehydrogenase family RAM_30360 PF03734 L,D-transpeptidase catalytic domain RAM_30380 PF13560 Helix-turn-helix domain RAM_30385 PF10014 2OG-Fe dioxygenase RAM_30390 PF01740 STAS domain RAM_30395 PF01625 Peptide methionine sulfoxide reductase RAM_30400 PF01447 Thermolysin metallopeptidase, catalytic domain RAM_30400 PF02868 Thermolysin metallopeptidase, alpha-helical domain RAM_30400 PF05345 Putative Ig domain RAM_30400 PF07504 Fungalysin/Thermolysin Propeptide Motif RAM_30405 PF02566 OsmC-like protein RAM_30410 PF00005 ABC transporter RAM_30410 PF13732 RAM_30410 RAM_30415 PF01061 RAM_30415 RAM_30420 PF04075 Domain of unknown function (DUF385) RAM_30430 PF00106 short chain dehydrogenase RAM_30435 PF00069 Protein kinase domain RAM_30445 PF03795 YCII-related domain RAM_30450 PF02146 Sir2 family RAM_30455 PF13459 4Fe-4S single cluster domain RAM_30460 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RAM_30460 PF10531 SLBB domain RAM_30460 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_30465 PF01794 RAM_30465 RAM_30470 PF02424 ApbE family RAM_30480 PF04185 Phosphoesterase family RAM_30485 PF07690 Major Facilitator Superfamily RAM_30490 PF07676 WD40-like Beta Propeller Repeat RAM_30500 PF07519 Tannase and feruloyl esterase RAM_30505 PF10503 Esterase PHB depolymerase RAM_30510 PF02624 YcaO-like family RAM_30525 PF13185 GAF domain RAM_30525 PF13556 PucR C-terminal helix-turn-helix domain RAM_30530 PF00083 Sugar (and other) transporter RAM_30535 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_30540 PF01381 Helix-turn-helix RAM_30550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_30555 PF08279 HTH domain RAM_30555 PF13280 RAM_30555 RAM_30560 PF00501 AMP-binding enzyme RAM_30560 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_30560 PF13193 AMP-binding enzyme C-terminal domain RAM_30565 PF06445 GyrI-like small molecule binding domain RAM_30570 PF03551 Transcriptional regulator PadR-like family RAM_30575 PF04434 RAM_30575 RAM_30585 PF07728 AAA domain (dynein-related subfamily) RAM_30595 PF05762 VWA domain containing CoxE-like protein RAM_30600 PF00444 Ribosomal protein L36 RAM_30605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_30610 PF01638 HxlR-like helix-turn-helix RAM_30610 PF02036 SCP-2 sterol transfer family RAM_30615 PF00743 Flavin-binding monooxygenase-like RAM_30620 PF02278 Polysaccharide lyase family 8, super-sandwich domain RAM_30620 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain RAM_30620 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain RAM_30625 PF00171 Aldehyde dehydrogenase family RAM_30635 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_30635 PF13378 Enolase C-terminal domain-like RAM_30640 PF00701 Dihydrodipicolinate synthetase family RAM_30645 PF00474 Sodium:solute symporter family RAM_30650 PF01614 Bacterial transcriptional regulator RAM_30650 PF09339 IclR helix-turn-helix domain RAM_30655 PF01370 NAD dependent epimerase/dehydratase family RAM_30660 PF02861 Clp amino terminal domain RAM_30665 PF13384 Homeodomain-like domain RAM_30670 PF01522 Polysaccharide deacetylase RAM_30675 PF07730 Histidine kinase RAM_30680 PF00072 Response regulator receiver domain RAM_30680 PF00196 Bacterial regulatory proteins, luxR family RAM_30690 PF13229 Right handed beta helix region RAM_30695 PF00440 Bacterial regulatory proteins, tetR family RAM_30700 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_30705 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_30710 PF13803 RAM_30710 RAM_30715 PF12833 Helix-turn-helix domain RAM_30720 PF00465 Iron-containing alcohol dehydrogenase RAM_30720 PF00775 Dioxygenase RAM_30720 PF04444 Catechol dioxygenase N terminus RAM_30725 PF01494 FAD binding domain RAM_30730 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RAM_30745 PF01433 Peptidase family M1 RAM_30750 PF00501 AMP-binding enzyme RAM_30750 PF00550 Phosphopantetheine attachment site RAM_30750 PF13193 AMP-binding enzyme C-terminal domain RAM_30750 PF14602 Hexapeptide repeat of succinyl-transferase RAM_30755 PF01926 50S ribosome-binding GTPase RAM_30755 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RAM_30760 PF01553 Acyltransferase RAM_30765 PF02224 Cytidylate kinase RAM_30770 PF00440 Bacterial regulatory proteins, tetR family RAM_30770 PF13305 WHG domain RAM_30775 PF14087 RAM_30775 RAM_30780 PF02080 TrkA-C domain RAM_30785 PF00999 Sodium/hydrogen exchanger family RAM_30790 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_30790 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_30795 PF04072 Leucine carboxyl methyltransferase RAM_30800 PF00849 RNA pseudouridylate synthase RAM_30800 PF01479 S4 domain RAM_30805 PF04079 Putative transcriptional regulators (Ypuh-like) RAM_30810 PF02616 ScpA/B protein RAM_30820 PF13614 AAA domain RAM_30825 PF00589 Phage integrase family RAM_30825 PF02899 Phage integrase, N-terminal SAM-like domain RAM_30830 PF05154 RAM_30830 RAM_30830 PF08044 RAM_30830 RAM_30835 PF00293 NUDIX domain RAM_30840 PF00117 Glutamine amidotransferase class-I RAM_30840 PF06418 CTP synthase N-terminus RAM_30845 PF01757 RAM_30845 RAM_30850 PF00392 Bacterial regulatory proteins, gntR family RAM_30850 PF07729 FCD domain RAM_30855 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RAM_30860 PF01177 Asp/Glu/Hydantoin racemase RAM_30865 PF05426 Alginate lyase RAM_30870 PF03995 Peptidase inhibitor family I36 RAM_30875 PF11382 RAM_30875 RAM_30880 PF12555 RAM_30880 RAM_30885 PF06889 RAM_30885 RAM_30890 PF08240 Alcohol dehydrogenase GroES-like domain RAM_30890 PF13602 Zinc-binding dehydrogenase RAM_30895 PF12802 MarR family RAM_30900 PF02463 RecF/RecN/SMC N terminal domain RAM_30905 PF01513 ATP-NAD kinase RAM_30910 PF01479 S4 domain RAM_30910 PF01728 FtsJ-like methyltransferase RAM_30920 PF13242 HAD-hyrolase-like RAM_30920 PF13344 Haloacid dehalogenase-like hydrolase RAM_30930 PF00579 tRNA synthetases class I (W and Y) RAM_30935 PF02245 Methylpurine-DNA glycosylase (MPG) RAM_30945 PF13761 RAM_30945 RAM_30950 PF00440 Bacterial regulatory proteins, tetR family RAM_30955 PF00206 Lyase RAM_30955 PF14698 Argininosuccinate lyase C-terminal RAM_30960 PF00764 Arginosuccinate synthase RAM_30965 PF01316 Arginine repressor, DNA binding domain RAM_30965 PF02863 Arginine repressor, C-terminal domain RAM_30970 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RAM_30970 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RAM_30975 PF00202 Aminotransferase class-III RAM_30980 PF00696 Amino acid kinase family RAM_30985 PF01960 ArgJ family RAM_30990 PF01118 Semialdehyde dehydrogenase, NAD binding domain RAM_30990 PF02774 Semialdehyde dehydrogenase, dimerisation domain RAM_30995 PF08279 HTH domain RAM_30995 PF13280 RAM_30995 RAM_31010 PF00561 alpha/beta hydrolase fold RAM_31010 PF08386 TAP-like protein RAM_31015 PF08713 DNA alkylation repair enzyme RAM_31020 PF01588 Putative tRNA binding domain RAM_31020 PF03147 Ferredoxin-fold anticodon binding domain RAM_31020 PF03483 B3/4 domain RAM_31020 PF03484 tRNA synthetase B5 domain RAM_31025 PF01409 tRNA synthetases class II core domain (F) RAM_31025 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RAM_31035 PF00588 SpoU rRNA Methylase family RAM_31035 PF08032 RNA 2'-O ribose methyltransferase substrate binding RAM_31040 PF00453 Ribosomal protein L20 RAM_31045 PF01632 Ribosomal protein L35 RAM_31050 PF00707 Translation initiation factor IF-3, C-terminal domain RAM_31050 PF05198 Translation initiation factor IF-3, N-terminal domain RAM_31060 PF00392 Bacterial regulatory proteins, gntR family RAM_31060 PF07729 FCD domain RAM_31065 PF00291 Pyridoxal-phosphate dependent enzyme RAM_31070 PF01042 Endoribonuclease L-PSP RAM_31075 PF01614 Bacterial transcriptional regulator RAM_31075 PF09339 IclR helix-turn-helix domain RAM_31080 PF00294 pfkB family carbohydrate kinase RAM_31085 PF01168 Alanine racemase, N-terminal domain RAM_31085 PF14031 Putative serine dehydratase domain RAM_31090 PF07969 Amidohydrolase family RAM_31095 PF02447 RAM_31095 RAM_31100 PF10282 Lactonase, 7-bladed beta-propeller RAM_31105 PF01547 Bacterial extracellular solute-binding protein RAM_31110 PF00528 Binding-protein-dependent transport system inner membrane component RAM_31115 PF00528 Binding-protein-dependent transport system inner membrane component RAM_31120 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_31120 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_31125 PF09471 IgA Peptidase M64 RAM_31130 PF00072 Response regulator receiver domain RAM_31135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_31135 PF13188 PAS domain RAM_31135 PF17203 RAM_31135 RAM_31140 PF00375 Sodium:dicarboxylate symporter family RAM_31145 PF01638 HxlR-like helix-turn-helix RAM_31150 PF07690 Major Facilitator Superfamily RAM_31155 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_31165 PF04542 Sigma-70 region 2 RAM_31165 PF04545 Sigma-70, region 4 RAM_31170 PF03640 RAM_31170 RAM_31180 PF00005 ABC transporter RAM_31185 PF01757 RAM_31185 RAM_31190 PF00753 Metallo-beta-lactamase superfamily RAM_31195 PF13245 Part of AAA domain RAM_31205 PF07920 Protein of unknown function (DUF1684) RAM_31220 PF00027 Cyclic nucleotide-binding domain RAM_31220 PF13545 Crp-like helix-turn-helix domain RAM_31225 PF00075 RNase H RAM_31240 PF00703 Glycosyl hydrolases family 2 RAM_31240 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_31240 PF03422 Carbohydrate binding module (family 6) RAM_31245 PF00135 Carboxylesterase family RAM_31250 PF12680 SnoaL-like domain RAM_31255 PF00999 Sodium/hydrogen exchanger family RAM_31255 PF02148 Zn-finger in ubiquitin-hydrolases and other protein RAM_31260 PF00300 Histidine phosphatase superfamily (branch 1) RAM_31265 PF03649 RAM_31265 RAM_31270 PF05423 Mycobacterium membrane protein RAM_31275 PF12833 Helix-turn-helix domain RAM_31280 PF00356 Bacterial regulatory proteins, lacI family RAM_31280 PF13377 Periplasmic binding protein-like domain RAM_31290 PF08808 RAM_31290 RAM_31300 PF03795 YCII-related domain RAM_31305 PF00326 Prolyl oligopeptidase family RAM_31305 PF07676 WD40-like Beta Propeller Repeat RAM_31310 PF03741 RAM_31310 RAM_31315 PF00005 ABC transporter RAM_31315 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_31315 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_31320 PF01548 RAM_31320 RAM_31320 PF02371 RAM_31320 RAM_31325 PF12679 RAM_31325 RAM_31335 PF00378 Enoyl-CoA hydratase/isomerase family RAM_31340 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_31345 PF05576 PS-10 peptidase S37 RAM_31350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_31355 PF00271 Helicase conserved C-terminal domain RAM_31355 PF02151 UvrB/uvrC motif RAM_31355 PF04851 Type III restriction enzyme, res subunit RAM_31355 PF12344 Ultra-violet resistance protein B RAM_31375 PF04167 Protein of unknown function (DUF402) RAM_31380 PF01121 Dephospho-CoA kinase RAM_31380 PF04229 GrpB protein RAM_31395 PF02566 OsmC-like protein RAM_31400 PF00440 Bacterial regulatory proteins, tetR family RAM_31400 PF13305 WHG domain RAM_31405 PF00575 S1 RNA binding domain RAM_31410 PF08241 Methyltransferase domain RAM_31415 PF00583 Acetyltransferase (GNAT) family RAM_31420 PF00583 Acetyltransferase (GNAT) family RAM_31430 PF12698 ABC-2 family transporter protein RAM_31435 PF00440 Bacterial regulatory proteins, tetR family RAM_31440 PF02311 AraC-like ligand binding domain RAM_31440 PF12833 Helix-turn-helix domain RAM_31445 PF13602 Zinc-binding dehydrogenase RAM_31450 PF13365 Trypsin-like peptidase domain RAM_31455 PF13202 EF hand RAM_31455 PF13499 EF-hand domain pair RAM_31460 PF00476 DNA polymerase family A RAM_31460 PF01367 5'-3' exonuclease, C-terminal SAM fold RAM_31460 PF01612 3'-5' exonuclease RAM_31460 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RAM_31465 PF03061 Thioesterase superfamily RAM_31470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_31470 PF03466 LysR substrate binding domain RAM_31475 PF00326 Prolyl oligopeptidase family RAM_31480 PF13458 Periplasmic binding protein RAM_31485 PF02653 RAM_31485 RAM_31490 PF02653 RAM_31490 RAM_31495 PF00005 ABC transporter RAM_31495 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_31500 PF00005 ABC transporter RAM_31505 PF11611 Domain of unknown function (DUF4352) RAM_31510 PF00072 Response regulator receiver domain RAM_31510 PF03861 ANTAR domain RAM_31515 PF00589 Phage integrase family RAM_31520 PF12728 Helix-turn-helix domain RAM_31525 PF12307 RAM_31525 RAM_31530 PF00145 C-5 cytosine-specific DNA methylase RAM_31560 PF09250 Bifunctional DNA primase/polymerase, N-terminal RAM_31570 PF00436 Single-strand binding protein family RAM_31620 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_31625 PF00293 NUDIX domain RAM_31645 PF00392 Bacterial regulatory proteins, gntR family RAM_31660 PF01636 Phosphotransferase enzyme family RAM_31665 PF00583 Acetyltransferase (GNAT) family RAM_31680 PF08937 MTH538 TIR-like domain (DUF1863) RAM_31685 PF01230 HIT domain RAM_31695 PF05729 NACHT domain RAM_31710 PF04542 Sigma-70 region 2 RAM_31710 PF08281 Sigma-70, region 4 RAM_31715 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_31720 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_31725 PF12802 MarR family RAM_31730 PF14011 EspG family RAM_31740 PF12079 RAM_31740 RAM_31760 PF07730 Histidine kinase RAM_31765 PF00072 Response regulator receiver domain RAM_31765 PF00196 Bacterial regulatory proteins, luxR family RAM_31770 PF06271 RAM_31770 RAM_31775 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_31780 PF10067 RAM_31780 RAM_31785 PF00072 Response regulator receiver domain RAM_31785 PF00196 Bacterial regulatory proteins, luxR family RAM_31790 PF07730 Histidine kinase RAM_31795 PF12770 RAM_31795 RAM_31805 PF00931 NB-ARC domain RAM_31815 PF01370 NAD dependent epimerase/dehydratase family RAM_31820 PF00005 ABC transporter RAM_31825 PF13354 Beta-lactamase enzyme family RAM_31835 PF04542 Sigma-70 region 2 RAM_31835 PF08281 Sigma-70, region 4 RAM_31840 PF00465 Iron-containing alcohol dehydrogenase RAM_31845 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_31845 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_31850 PF00171 Aldehyde dehydrogenase family RAM_31855 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_31855 PF13378 Enolase C-terminal domain-like RAM_31860 PF08714 Formaldehyde-activating enzyme (Fae) RAM_31865 PF01614 Bacterial transcriptional regulator RAM_31865 PF09339 IclR helix-turn-helix domain RAM_31870 PF06441 Epoxide hydrolase N terminus RAM_31875 PF13560 Helix-turn-helix domain RAM_31885 PF12697 Alpha/beta hydrolase family RAM_31890 PF01965 DJ-1/PfpI family RAM_31890 PF12833 Helix-turn-helix domain RAM_31895 PF06441 Epoxide hydrolase N terminus RAM_31900 PF00440 Bacterial regulatory proteins, tetR family RAM_31905 PF00106 short chain dehydrogenase RAM_31910 PF13560 Helix-turn-helix domain RAM_31920 PF03861 ANTAR domain RAM_31920 PF13185 GAF domain RAM_31925 PF04539 Sigma-70 region 3 RAM_31925 PF04542 Sigma-70 region 2 RAM_31925 PF04545 Sigma-70, region 4 RAM_31930 PF13581 Histidine kinase-like ATPase domain RAM_31935 PF04389 Peptidase family M28 RAM_31940 PF02423 Ornithine cyclodeaminase/mu-crystallin family RAM_31945 PF00291 Pyridoxal-phosphate dependent enzyme RAM_31950 PF00668 Condensation domain RAM_31955 PF00975 Thioesterase domain RAM_31960 PF00550 Phosphopantetheine attachment site RAM_31960 PF00668 Condensation domain RAM_31965 PF00501 AMP-binding enzyme RAM_31965 PF00550 Phosphopantetheine attachment site RAM_31965 PF00668 Condensation domain RAM_31965 PF13649 Methyltransferase domain RAM_31970 PF00501 AMP-binding enzyme RAM_31970 PF13193 AMP-binding enzyme C-terminal domain RAM_31975 PF05977 Transmembrane secretion effector RAM_31980 PF00501 AMP-binding enzyme RAM_31980 PF00550 Phosphopantetheine attachment site RAM_31980 PF00668 Condensation domain RAM_31980 PF13193 AMP-binding enzyme C-terminal domain RAM_31990 PF03621 MbtH-like protein RAM_31995 PF00501 AMP-binding enzyme RAM_31995 PF00550 Phosphopantetheine attachment site RAM_31995 PF00668 Condensation domain RAM_31995 PF13193 AMP-binding enzyme C-terminal domain RAM_32000 PF00067 Cytochrome P450 RAM_32015 PF00501 AMP-binding enzyme RAM_32015 PF00550 Phosphopantetheine attachment site RAM_32015 PF00975 Thioesterase domain RAM_32015 PF13193 AMP-binding enzyme C-terminal domain RAM_32020 PF00501 AMP-binding enzyme RAM_32020 PF00550 Phosphopantetheine attachment site RAM_32020 PF00668 Condensation domain RAM_32020 PF13193 AMP-binding enzyme C-terminal domain RAM_32025 PF00501 AMP-binding enzyme RAM_32025 PF00550 Phosphopantetheine attachment site RAM_32025 PF13193 AMP-binding enzyme C-terminal domain RAM_32030 PF00196 Bacterial regulatory proteins, luxR family RAM_32030 PF13191 AAA ATPase domain RAM_32035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_32035 PF03466 LysR substrate binding domain RAM_32040 PF07336 Protein of unknown function (DUF1470) RAM_32040 PF11706 CGNR zinc finger RAM_32045 PF07690 Major Facilitator Superfamily RAM_32050 PF13460 NADH(P)-binding RAM_32055 PF03799 Cell division protein FtsQ RAM_32055 PF08478 POTRA domain, FtsQ-type RAM_32060 PF01225 Mur ligase family, catalytic domain RAM_32060 PF02875 Mur ligase family, glutamate ligase domain RAM_32060 PF08245 Mur ligase middle domain RAM_32065 PF03033 Glycosyltransferase family 28 N-terminal domain RAM_32065 PF04101 Glycosyltransferase family 28 C-terminal domain RAM_32070 PF01098 RAM_32070 RAM_32075 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RAM_32075 PF08245 Mur ligase middle domain RAM_32080 PF00953 Glycosyl transferase family 4 RAM_32080 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RAM_32085 PF01225 Mur ligase family, catalytic domain RAM_32085 PF02875 Mur ligase family, glutamate ligase domain RAM_32085 PF08245 Mur ligase middle domain RAM_32090 PF01225 Mur ligase family, catalytic domain RAM_32090 PF02875 Mur ligase family, glutamate ligase domain RAM_32090 PF08245 Mur ligase middle domain RAM_32100 PF00905 Penicillin binding protein transpeptidase domain RAM_32100 PF03717 Penicillin-binding Protein dimerisation domain RAM_32110 PF01795 MraW methylase family RAM_32115 PF02381 MraZ protein RAM_32125 PF14011 EspG family RAM_32130 PF00823 PPE family RAM_32135 PF12079 RAM_32135 RAM_32145 PF07726 ATPase family associated with various cellular activities (AAA) RAM_32150 PF01882 RAM_32150 RAM_32155 PF01841 Transglutaminase-like superfamily RAM_32160 PF11239 RAM_32160 RAM_32165 PF00817 impB/mucB/samB family RAM_32165 PF11798 IMS family HHH motif RAM_32165 PF11799 impB/mucB/samB family C-terminal domain RAM_32170 PF13489 Methyltransferase domain RAM_32175 PF13614 AAA domain RAM_32180 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_32180 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_32185 PF00962 Adenosine/AMP deaminase RAM_32190 PF13302 Acetyltransferase (GNAT) domain RAM_32195 PF01180 Dihydroorotate dehydrogenase RAM_32200 PF01425 Amidase RAM_32210 PF04012 RAM_32210 RAM_32215 PF13560 Helix-turn-helix domain RAM_32220 PF02464 Competence-damaged protein RAM_32225 PF01066 CDP-alcohol phosphatidyltransferase RAM_32230 PF00919 Uncharacterized protein family UPF0004 RAM_32230 PF04055 Radical SAM superfamily RAM_32235 PF00583 Acetyltransferase (GNAT) family RAM_32240 PF09056 Prokaryotic phospholipase A2 RAM_32245 PF00881 Nitroreductase family RAM_32255 PF13707 RAM_32255 RAM_32260 PF13304 AAA domain RAM_32265 PF01580 FtsK/SpoIIIE family RAM_32265 PF09397 Ftsk gamma domain RAM_32265 PF13491 RAM_32265 RAM_32270 PF01553 Acyltransferase RAM_32275 PF03358 NADPH-dependent FMN reductase RAM_32290 PF00892 EamA-like transporter family RAM_32295 PF00324 Amino acid permease RAM_32300 PF00092 von Willebrand factor type A domain RAM_32300 PF13531 Bacterial extracellular solute-binding protein RAM_32305 PF00753 Metallo-beta-lactamase superfamily RAM_32305 PF07521 RNA-metabolising metallo-beta-lactamase RAM_32310 PF00701 Dihydrodipicolinate synthetase family RAM_32315 PF00069 Protein kinase domain RAM_32325 PF01566 RAM_32325 RAM_32330 PF13840 ACT domain RAM_32335 PF02511 Thymidylate synthase complementing protein RAM_32340 PF05534 RAM_32340 RAM_32345 PF13349 RAM_32345 RAM_32350 PF06224 RAM_32350 RAM_32355 PF00583 Acetyltransferase (GNAT) family RAM_32365 PF01381 Helix-turn-helix RAM_32375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_32375 PF03466 LysR substrate binding domain RAM_32390 PF01113 Dihydrodipicolinate reductase, N-terminus RAM_32390 PF05173 Dihydrodipicolinate reductase, C-terminus RAM_32395 PF00675 Insulinase (Peptidase family M16) RAM_32395 PF05193 Peptidase M16 inactive domain RAM_32400 PF00013 KH domain RAM_32400 PF00575 S1 RNA binding domain RAM_32400 PF01138 3' exoribonuclease family, domain 1 RAM_32400 PF03725 3' exoribonuclease family, domain 2 RAM_32400 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RAM_32405 PF00312 Ribosomal protein S15 RAM_32410 PF02834 LigT like Phosphoesterase RAM_32420 PF01687 Riboflavin kinase RAM_32420 PF06574 FAD synthetase RAM_32425 PF01509 TruB family pseudouridylate synthase (N terminal domain) RAM_32425 PF09142 tRNA Pseudouridine synthase II, C terminal RAM_32425 PF16198 RAM_32425 RAM_32430 PF13673 Acetyltransferase (GNAT) domain RAM_32440 PF07690 Major Facilitator Superfamily RAM_32445 PF01554 MatE RAM_32450 PF01368 DHH family RAM_32450 PF02272 DHHA1 domain RAM_32455 PF01170 Putative RNA methylase family UPF0020 RAM_32460 PF01145 SPFH domain / Band 7 family RAM_32470 PF00440 Bacterial regulatory proteins, tetR family RAM_32475 PF13649 Methyltransferase domain RAM_32485 PF00756 Putative esterase RAM_32490 PF02033 Ribosome-binding factor A RAM_32495 PF04456 Protein of unknown function (DUF503) RAM_32500 PF00009 Elongation factor Tu GTP binding domain RAM_32500 PF04760 Translation initiation factor IF-2, N-terminal region RAM_32500 PF11987 Translation-initiation factor 2 RAM_32505 PF04296 Protein of unknown function (DUF448) RAM_32510 PF08529 NusA N-terminal domain RAM_32510 PF13184 NusA-like KH domain RAM_32515 PF02576 Uncharacterised BCR, YhbC family COG0779 RAM_32515 PF17384 RAM_32515 RAM_32520 PF14530 Domain of unknown function (DUF4439) RAM_32530 PF00266 Aminotransferase class-V RAM_32535 PF13714 Phosphoenolpyruvate phosphomutase RAM_32540 PF03703 RAM_32540 RAM_32545 PF00440 Bacterial regulatory proteins, tetR family RAM_32550 PF05719 Golgi phosphoprotein 3 (GPP34) RAM_32555 PF07730 Histidine kinase RAM_32560 PF00072 Response regulator receiver domain RAM_32560 PF00196 Bacterial regulatory proteins, luxR family RAM_32565 PF13398 Peptidase M50B-like RAM_32570 PF01638 HxlR-like helix-turn-helix RAM_32575 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_32580 PF00440 Bacterial regulatory proteins, tetR family RAM_32585 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_32585 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_32600 PF00072 Response regulator receiver domain RAM_32600 PF00486 Transcriptional regulatory protein, C terminal RAM_32605 PF00512 His Kinase A (phospho-acceptor) domain RAM_32605 PF00672 HAMP domain RAM_32605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_32615 PF00931 NB-ARC domain RAM_32615 PF13424 Tetratricopeptide repeat RAM_32625 PF00931 NB-ARC domain RAM_32625 PF03704 Bacterial transcriptional activator domain RAM_32625 PF13424 Tetratricopeptide repeat RAM_32635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_32635 PF03466 LysR substrate binding domain RAM_32640 PF02515 CoA-transferase family III RAM_32645 PF00378 Enoyl-CoA hydratase/isomerase family RAM_32650 PF06314 Acetoacetate decarboxylase (ADC) RAM_32655 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_32655 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_32660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_32660 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_32660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_32665 PF03816 Cell envelope-related transcriptional attenuator domain RAM_32670 PF00106 short chain dehydrogenase RAM_32675 PF04542 Sigma-70 region 2 RAM_32675 PF08281 Sigma-70, region 4 RAM_32680 PF02467 RAM_32680 RAM_32685 PF08281 Sigma-70, region 4 RAM_32690 PF04542 Sigma-70 region 2 RAM_32690 PF08281 Sigma-70, region 4 RAM_32695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_32695 PF03466 LysR substrate binding domain RAM_32700 PF13593 SBF-like CPA transporter family (DUF4137) RAM_32710 PF07731 Multicopper oxidase RAM_32710 PF07732 Multicopper oxidase RAM_32715 PF00067 Cytochrome P450 RAM_32720 PF13565 RAM_32720 RAM_32725 PF13358 DDE superfamily endonuclease RAM_32730 PF13460 NADH(P)-binding RAM_32735 PF01872 RibD C-terminal domain RAM_32740 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_32740 PF12840 Helix-turn-helix domain RAM_32755 PF00486 Transcriptional regulatory protein, C terminal RAM_32755 PF00931 NB-ARC domain RAM_32755 PF03704 Bacterial transcriptional activator domain RAM_32755 PF13424 Tetratricopeptide repeat RAM_32760 PF17210 RAM_32760 RAM_32780 PF03466 LysR substrate binding domain RAM_32790 PF00266 Aminotransferase class-V RAM_32795 PF13463 Winged helix DNA-binding domain RAM_32800 PF00561 alpha/beta hydrolase fold RAM_32805 PF00440 Bacterial regulatory proteins, tetR family RAM_32810 PF00301 Rubredoxin RAM_32810 PF00487 RAM_32810 RAM_32815 PF08376 Nitrate and nitrite sensing RAM_32820 PF03259 Roadblock/LC7 domain RAM_32825 PF05331 RAM_32825 RAM_32830 PF03029 Conserved hypothetical ATP binding protein RAM_32850 PF04542 Sigma-70 region 2 RAM_32850 PF08281 Sigma-70, region 4 RAM_32860 PF13564 RAM_32860 RAM_32865 PF00440 Bacterial regulatory proteins, tetR family RAM_32865 PF16925 RAM_32865 RAM_32870 PF07883 Cupin domain RAM_32875 PF09362 RAM_32875 RAM_32880 PF04616 Glycosyl hydrolases family 43 RAM_32895 PF04542 Sigma-70 region 2 RAM_32895 PF08281 Sigma-70, region 4 RAM_32900 PF03795 YCII-related domain RAM_32905 PF00561 alpha/beta hydrolase fold RAM_32910 PF00440 Bacterial regulatory proteins, tetR family RAM_32915 PF08240 Alcohol dehydrogenase GroES-like domain RAM_32915 PF13602 Zinc-binding dehydrogenase RAM_32925 PF13365 Trypsin-like peptidase domain RAM_32930 PF13191 AAA ATPase domain RAM_32940 PF00012 Hsp70 protein RAM_32940 PF00656 Caspase domain RAM_32955 PF01979 Amidohydrolase family RAM_32960 PF00440 Bacterial regulatory proteins, tetR family RAM_32960 PF16859 RAM_32960 RAM_32970 PF00652 Ricin-type beta-trefoil lectin domain RAM_32970 PF02057 Glycosyl hydrolase family 59 RAM_32970 PF13385 Concanavalin A-like lectin/glucanases superfamily RAM_32975 PF00331 Glycosyl hydrolase family 10 RAM_32975 PF00652 Ricin-type beta-trefoil lectin domain RAM_32980 PF13245 Part of AAA domain RAM_32990 PF04542 Sigma-70 region 2 RAM_32990 PF04545 Sigma-70, region 4 RAM_33000 PF01979 Amidohydrolase family RAM_33010 PF02558 Ketopantoate reductase PanE/ApbA RAM_33015 PF00440 Bacterial regulatory proteins, tetR family RAM_33030 PF00196 Bacterial regulatory proteins, luxR family RAM_33040 PF01828 Peptidase A4 family RAM_33045 PF03704 Bacterial transcriptional activator domain RAM_33060 PF01757 RAM_33060 RAM_33070 PF00296 Luciferase-like monooxygenase RAM_33075 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_33080 PF01636 Phosphotransferase enzyme family RAM_33095 PF00440 Bacterial regulatory proteins, tetR family RAM_33100 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_33105 PF00486 Transcriptional regulatory protein, C terminal RAM_33105 PF00931 NB-ARC domain RAM_33105 PF03704 Bacterial transcriptional activator domain RAM_33105 PF13424 Tetratricopeptide repeat RAM_33115 PF01471 Putative peptidoglycan binding domain RAM_33120 PF01471 Putative peptidoglycan binding domain RAM_33125 PF04075 Domain of unknown function (DUF385) RAM_33130 PF12680 SnoaL-like domain RAM_33135 PF00248 Aldo/keto reductase family RAM_33140 PF00753 Metallo-beta-lactamase superfamily RAM_33145 PF00196 Bacterial regulatory proteins, luxR family RAM_33145 PF13191 AAA ATPase domain RAM_33150 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_33150 PF01799 [2Fe-2S] binding domain RAM_33150 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RAM_33160 PF00196 Bacterial regulatory proteins, luxR family RAM_33165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_33165 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_33165 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_33170 PF07167 RAM_33170 RAM_33175 PF00561 alpha/beta hydrolase fold RAM_33180 PF00501 AMP-binding enzyme RAM_33180 PF13193 AMP-binding enzyme C-terminal domain RAM_33185 PF00561 alpha/beta hydrolase fold RAM_33190 PF00440 Bacterial regulatory proteins, tetR family RAM_33195 PF12697 Alpha/beta hydrolase family RAM_33200 PF00196 Bacterial regulatory proteins, luxR family RAM_33200 PF13191 AAA ATPase domain RAM_33205 PF00196 Bacterial regulatory proteins, luxR family RAM_33205 PF13191 AAA ATPase domain RAM_33210 PF07690 Major Facilitator Superfamily RAM_33215 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_33215 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_33220 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_33220 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_33225 PF00083 Sugar (and other) transporter RAM_33225 PF07690 Major Facilitator Superfamily RAM_33230 PF00754 F5/8 type C domain RAM_33235 PF02426 Muconolactone delta-isomerase RAM_33245 PF01740 STAS domain RAM_33250 PF13466 STAS domain RAM_33255 PF13581 Histidine kinase-like ATPase domain RAM_33255 PF14417 RAM_33255 RAM_33260 PF13581 Histidine kinase-like ATPase domain RAM_33265 PF09339 IclR helix-turn-helix domain RAM_33270 PF00005 ABC transporter RAM_33280 PF07730 Histidine kinase RAM_33285 PF00072 Response regulator receiver domain RAM_33285 PF00196 Bacterial regulatory proteins, luxR family RAM_33310 PF09335 RAM_33310 RAM_33320 PF02673 RAM_33320 RAM_33325 PF03965 Penicillinase repressor RAM_33330 PF01435 Peptidase family M48 RAM_33340 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase RAM_33350 PF00005 ABC transporter RAM_33355 PF12679 RAM_33355 RAM_33360 PF07730 Histidine kinase RAM_33365 PF00072 Response regulator receiver domain RAM_33365 PF00196 Bacterial regulatory proteins, luxR family RAM_33375 PF01339 CheB methylesterase RAM_33390 PF00440 Bacterial regulatory proteins, tetR family RAM_33395 PF05368 NmrA-like family RAM_33405 PF13460 NADH(P)-binding RAM_33410 PF07883 Cupin domain RAM_33415 PF01965 DJ-1/PfpI family RAM_33420 PF07859 alpha/beta hydrolase fold RAM_33425 PF07859 alpha/beta hydrolase fold RAM_33430 PF07690 Major Facilitator Superfamily RAM_33435 PF00106 short chain dehydrogenase RAM_33440 PF13460 NADH(P)-binding RAM_33445 PF01966 HD domain RAM_33445 PF12680 SnoaL-like domain RAM_33450 PF12802 MarR family RAM_33455 PF01965 DJ-1/PfpI family RAM_33455 PF12833 Helix-turn-helix domain RAM_33460 PF01966 HD domain RAM_33465 PF01042 Endoribonuclease L-PSP RAM_33475 PF03861 ANTAR domain RAM_33475 PF13185 GAF domain RAM_33480 PF00122 E1-E2 ATPase RAM_33480 PF00403 Heavy-metal-associated domain RAM_33480 PF00702 haloacid dehalogenase-like hydrolase RAM_33485 PF00403 Heavy-metal-associated domain RAM_33490 PF04542 Sigma-70 region 2 RAM_33490 PF08281 Sigma-70, region 4 RAM_33495 PF04542 Sigma-70 region 2 RAM_33495 PF08281 Sigma-70, region 4 RAM_33500 PF13490 Putative zinc-finger RAM_33505 PF01965 DJ-1/PfpI family RAM_33510 PF00005 ABC transporter RAM_33515 PF01032 FecCD transport family RAM_33520 PF01497 Periplasmic binding protein RAM_33525 PF04234 CopC domain RAM_33530 PF00122 E1-E2 ATPase RAM_33530 PF00403 Heavy-metal-associated domain RAM_33530 PF00702 haloacid dehalogenase-like hydrolase RAM_33535 PF17197 RAM_33535 RAM_33540 PF03929 RAM_33540 RAM_33550 PF01740 STAS domain RAM_33550 PF03861 ANTAR domain RAM_33555 PF13185 GAF domain RAM_33565 PF13185 GAF domain RAM_33570 PF03861 ANTAR domain RAM_33575 PF03861 ANTAR domain RAM_33575 PF13185 GAF domain RAM_33580 PF03861 ANTAR domain RAM_33580 PF13185 GAF domain RAM_33590 PF09954 RAM_33590 RAM_33600 PF03861 ANTAR domain RAM_33600 PF13185 GAF domain RAM_33605 PF07228 Stage II sporulation protein E (SpoIIE) RAM_33610 PF02566 OsmC-like protein RAM_33635 PF00384 Molybdopterin oxidoreductase RAM_33635 PF01568 Molydopterin dinucleotide binding domain RAM_33645 PF07295 RAM_33645 RAM_33650 PF00107 Zinc-binding dehydrogenase RAM_33650 PF08240 Alcohol dehydrogenase GroES-like domain RAM_33650 PF13823 Alcohol dehydrogenase GroES-associated RAM_33655 PF03861 ANTAR domain RAM_33655 PF13185 GAF domain RAM_33660 PF08240 Alcohol dehydrogenase GroES-like domain RAM_33660 PF13602 Zinc-binding dehydrogenase RAM_33665 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_33670 PF03022 Major royal jelly protein RAM_33675 PF00171 Aldehyde dehydrogenase family RAM_33680 PF13515 RAM_33680 RAM_33685 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_33685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_33685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_33690 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_33690 PF13378 Enolase C-terminal domain-like RAM_33695 PF01565 FAD binding domain RAM_33695 PF02754 RAM_33695 RAM_33695 PF02913 FAD linked oxidases, C-terminal domain RAM_33695 PF13183 4Fe-4S dicluster domain RAM_33700 PF06150 ChaB RAM_33700 PF07498 Rho termination factor, N-terminal domain RAM_33715 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_33715 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_33725 PF00871 Acetokinase family RAM_33730 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase RAM_33730 PF09363 XFP C-terminal domain RAM_33730 PF09364 XFP N-terminal domain RAM_33735 PF01814 Hemerythrin HHE cation binding domain RAM_33740 PF04454 Encapsulating protein for peroxidase RAM_33745 PF00107 Zinc-binding dehydrogenase RAM_33745 PF08240 Alcohol dehydrogenase GroES-like domain RAM_33745 PF13823 Alcohol dehydrogenase GroES-associated RAM_33760 PF00571 CBS domain RAM_33765 PF03600 Citrate transporter RAM_33770 PF00005 ABC transporter RAM_33775 PF12730 RAM_33775 RAM_33785 PF13489 Methyltransferase domain RAM_33795 PF01807 CHC2 zinc finger RAM_33795 PF08275 DNA primase catalytic core, N-terminal domain RAM_33795 PF08278 DNA primase DnaG DnaB-binding RAM_33795 PF10410 DnaB-helicase binding domain of primase RAM_33795 PF13662 Toprim domain RAM_33800 PF04542 Sigma-70 region 2 RAM_33800 PF08281 Sigma-70, region 4 RAM_33800 PF12680 SnoaL-like domain RAM_33810 PF02627 Carboxymuconolactone decarboxylase family RAM_33815 PF07690 Major Facilitator Superfamily RAM_33820 PF12802 MarR family RAM_33825 PF02627 Carboxymuconolactone decarboxylase family RAM_33830 PF00440 Bacterial regulatory proteins, tetR family RAM_33835 PF04978 Protein of unknown function (DUF664) RAM_33850 PF00079 Serpin (serine protease inhibitor) RAM_33855 PF01966 HD domain RAM_33855 PF13286 Phosphohydrolase-associated domain RAM_33860 PF02698 DUF218 domain RAM_33865 PF00072 Response regulator receiver domain RAM_33865 PF00196 Bacterial regulatory proteins, luxR family RAM_33870 PF07730 Histidine kinase RAM_33875 PF01061 RAM_33875 RAM_33880 PF00005 ABC transporter RAM_33885 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_33885 PF03129 Anticodon binding domain RAM_33890 PF04203 Sortase family RAM_33895 PF04203 Sortase family RAM_33905 PF01022 Bacterial regulatory protein, arsR family RAM_33910 PF01475 Ferric uptake regulator family RAM_33920 PF09323 RAM_33920 RAM_33925 PF03773 RAM_33925 RAM_33935 PF01255 Putative undecaprenyl diphosphate synthase RAM_33940 PF02565 Recombination protein O C terminal RAM_33940 PF11967 Recombination protein O N terminal RAM_33945 PF04505 RAM_33945 RAM_33950 PF06271 RAM_33950 RAM_33955 PF10825 RAM_33955 RAM_33960 PF04505 RAM_33960 RAM_33965 PF04505 RAM_33965 RAM_33970 PF01926 50S ribosome-binding GTPase RAM_33970 PF07650 KH domain RAM_33980 PF00571 CBS domain RAM_33980 PF01595 RAM_33980 RAM_33980 PF03471 Transporter associated domain RAM_33985 PF02130 Uncharacterized protein family UPF0054 RAM_33990 PF02562 PhoH-like protein RAM_34000 PF01230 HIT domain RAM_34005 PF04452 RNA methyltransferase RAM_34010 PF00226 DnaJ domain RAM_34010 PF00684 DnaJ central domain RAM_34010 PF01556 DnaJ C terminal domain RAM_34015 PF01628 HrcA protein C terminal domain RAM_34015 PF08220 DeoR-like helix-turn-helix domain RAM_34020 PF02575 YbaB/EbfC DNA-binding family RAM_34025 PF10824 Protein of unknown function (DUF2580) RAM_34040 PF00248 Aldo/keto reductase family RAM_34045 PF00171 Aldehyde dehydrogenase family RAM_34050 PF07905 RAM_34050 RAM_34050 PF13556 PucR C-terminal helix-turn-helix domain RAM_34055 PF00720 Subtilisin inhibitor-like RAM_34065 PF04149 RAM_34065 RAM_34070 PF13777 RAM_34070 RAM_34075 PF00512 His Kinase A (phospho-acceptor) domain RAM_34075 PF00672 HAMP domain RAM_34075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_34080 PF00072 Response regulator receiver domain RAM_34080 PF00486 Transcriptional regulatory protein, C terminal RAM_34085 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RAM_34090 PF00795 Carbon-nitrogen hydrolase RAM_34095 PF01979 Amidohydrolase family RAM_34100 PF00296 Luciferase-like monooxygenase RAM_34105 PF00561 alpha/beta hydrolase fold RAM_34105 PF08386 TAP-like protein RAM_34110 PF00144 Beta-lactamase RAM_34115 PF04954 Siderophore-interacting protein RAM_34115 PF08021 Siderophore-interacting FAD-binding domain RAM_34125 PF14534 Domain of unknown function (DUF4440) RAM_34130 PF00440 Bacterial regulatory proteins, tetR family RAM_34130 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_34135 PF08240 Alcohol dehydrogenase GroES-like domain RAM_34135 PF13602 Zinc-binding dehydrogenase RAM_34140 PF04055 Radical SAM superfamily RAM_34145 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_34150 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RAM_34150 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RAM_34160 PF01507 Phosphoadenosine phosphosulfate reductase family RAM_34165 PF01507 Phosphoadenosine phosphosulfate reductase family RAM_34170 PF00009 Elongation factor Tu GTP binding domain RAM_34175 PF01903 CbiX RAM_34185 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_34195 PF11695 RAM_34195 RAM_34200 PF00378 Enoyl-CoA hydratase/isomerase family RAM_34205 PF01337 Barstar (barnase inhibitor) RAM_34210 PF00545 ribonuclease RAM_34220 PF00107 Zinc-binding dehydrogenase RAM_34220 PF08240 Alcohol dehydrogenase GroES-like domain RAM_34225 PF12697 Alpha/beta hydrolase family RAM_34230 PF13520 Amino acid permease RAM_34235 PF03060 Nitronate monooxygenase RAM_34240 PF12802 MarR family RAM_34245 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_34245 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_34245 PF02839 Carbohydrate binding domain RAM_34250 PF13576 Pentapeptide repeats (9 copies) RAM_34255 PF01230 HIT domain RAM_34260 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_34270 PF05685 Putative restriction endonuclease RAM_34275 PF00009 Elongation factor Tu GTP binding domain RAM_34275 PF00679 Elongation factor G C-terminus RAM_34275 PF06421 GTP-binding protein LepA C-terminus RAM_34280 PF08241 Methyltransferase domain RAM_34285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_34290 PF00892 EamA-like transporter family RAM_34295 PF01649 Ribosomal protein S20 RAM_34300 PF06144 DNA polymerase III, delta subunit RAM_34305 PF00291 Pyridoxal-phosphate dependent enzyme RAM_34310 PF14015 RAM_34310 RAM_34315 PF00753 Metallo-beta-lactamase superfamily RAM_34315 PF03772 RAM_34315 RAM_34315 PF13567 RAM_34315 RAM_34320 PF10531 SLBB domain RAM_34320 PF12836 Helix-hairpin-helix motif RAM_34325 PF02645 Uncharacterised protein, DegV family COG1307 RAM_34330 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_34335 PF00300 Histidine phosphatase superfamily (branch 1) RAM_34340 PF02410 Oligomerisation domain RAM_34345 PF01467 Cytidylyltransferase RAM_34350 PF00270 DEAD/DEAH box helicase RAM_34350 PF00271 Helicase conserved C-terminal domain RAM_34350 PF16124 RAM_34350 RAM_34355 PF07690 Major Facilitator Superfamily RAM_34360 PF00750 tRNA synthetases class I (R) RAM_34360 PF03485 Arginyl tRNA synthetase N terminal domain RAM_34360 PF05746 DALR anticodon binding domain RAM_34365 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_34370 PF03992 Antibiotic biosynthesis monooxygenase RAM_34375 PF00440 Bacterial regulatory proteins, tetR family RAM_34375 PF16859 RAM_34375 RAM_34380 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_34385 PF00696 Amino acid kinase family RAM_34385 PF01472 PUA domain RAM_34390 PF01018 GTP1/OBG RAM_34390 PF01926 50S ribosome-binding GTPase RAM_34390 PF09269 Domain of unknown function (DUF1967) RAM_34395 PF01016 Ribosomal L27 protein RAM_34400 PF00829 Ribosomal prokaryotic L21 protein RAM_34405 PF04760 Translation initiation factor IF-2, N-terminal region RAM_34405 PF10150 Ribonuclease E/G family RAM_34410 PF00082 Subtilase family RAM_34415 PF01061 RAM_34415 RAM_34420 PF01061 RAM_34420 RAM_34425 PF00005 ABC transporter RAM_34430 PF00149 Calcineurin-like phosphoesterase RAM_34430 PF09992 Predicted periplasmic protein (DUF2233) RAM_34435 PF07398 RAM_34435 RAM_34435 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_34440 PF00334 Nucleoside diphosphate kinase RAM_34445 PF09423 PhoD-like phosphatase RAM_34445 PF16655 RAM_34445 RAM_34450 PF01804 Penicillin amidase RAM_34455 PF14017 RAM_34455 RAM_34460 PF02875 Mur ligase family, glutamate ligase domain RAM_34460 PF08245 Mur ligase middle domain RAM_34465 PF08241 Methyltransferase domain RAM_34470 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_34475 PF00561 alpha/beta hydrolase fold RAM_34480 PF12697 Alpha/beta hydrolase family RAM_34485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_34485 PF03466 LysR substrate binding domain RAM_34490 PF00133 tRNA synthetases class I (I, L, M and V) RAM_34490 PF08264 Anticodon-binding domain of tRNA RAM_34490 PF10458 Valyl tRNA synthetase tRNA binding arm RAM_34500 PF12802 MarR family RAM_34505 PF07690 Major Facilitator Superfamily RAM_34510 PF00384 Molybdopterin oxidoreductase RAM_34510 PF01568 Molydopterin dinucleotide binding domain RAM_34520 PF03816 Cell envelope-related transcriptional attenuator domain RAM_34520 PF13399 LytR cell envelope-related transcriptional attenuator RAM_34535 PF07690 Major Facilitator Superfamily RAM_34540 PF02634 FdhD/NarQ family RAM_34545 PF03055 Retinal pigment epithelial membrane protein RAM_34550 PF00440 Bacterial regulatory proteins, tetR family RAM_34550 PF13305 WHG domain RAM_34555 PF00756 Putative esterase RAM_34560 PF13581 Histidine kinase-like ATPase domain RAM_34560 PF14417 RAM_34560 RAM_34570 PF06689 ClpX C4-type zinc finger RAM_34570 PF07724 AAA domain (Cdc48 subfamily) RAM_34570 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_34575 PF00574 Clp protease RAM_34580 PF00574 Clp protease RAM_34585 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RAM_34585 PF05697 Bacterial trigger factor protein (TF) RAM_34585 PF05698 Bacterial trigger factor protein (TF) C-terminus RAM_34590 PF00440 Bacterial regulatory proteins, tetR family RAM_34595 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_34595 PF00175 Oxidoreductase NAD-binding domain RAM_34595 PF00487 RAM_34595 RAM_34595 PF00970 Oxidoreductase FAD-binding domain RAM_34605 PF00512 His Kinase A (phospho-acceptor) domain RAM_34605 PF00672 HAMP domain RAM_34605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_34610 PF13231 RAM_34610 RAM_34620 PF13560 Helix-turn-helix domain RAM_34625 PF00586 AIR synthase related protein, N-terminal domain RAM_34625 PF02769 AIR synthase related protein, C-terminal domain RAM_34630 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) RAM_34640 PF13560 Helix-turn-helix domain RAM_34650 PF00027 Cyclic nucleotide-binding domain RAM_34650 PF13545 Crp-like helix-turn-helix domain RAM_34665 PF00535 Glycosyl transferase family 2 RAM_34665 PF04138 RAM_34665 RAM_34670 PF13231 RAM_34670 RAM_34680 PF13577 SnoaL-like domain RAM_34685 PF00486 Transcriptional regulatory protein, C terminal RAM_34685 PF03704 Bacterial transcriptional activator domain RAM_34695 PF09900 RAM_34695 RAM_34720 PF07971 Glycosyl hydrolase family 92 RAM_34725 PF07969 Amidohydrolase family RAM_34735 PF00005 ABC transporter RAM_34740 PF00440 Bacterial regulatory proteins, tetR family RAM_34745 PF00082 Subtilase family RAM_34750 PF00480 ROK family RAM_34750 PF12802 MarR family RAM_34755 PF01261 Xylose isomerase-like TIM barrel RAM_34760 PF06283 Trehalose utilisation RAM_34765 PF01047 MarR family RAM_34770 PF07690 Major Facilitator Superfamily RAM_34775 PF00248 Aldo/keto reductase family RAM_34780 PF04672 S-adenosyl methyltransferase RAM_34795 PF12728 Helix-turn-helix domain RAM_34810 PF01965 DJ-1/PfpI family RAM_34815 PF07228 Stage II sporulation protein E (SpoIIE) RAM_34815 PF13188 PAS domain RAM_34820 PF00072 Response regulator receiver domain RAM_34820 PF00512 His Kinase A (phospho-acceptor) domain RAM_34820 PF00672 HAMP domain RAM_34820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_34820 PF13185 GAF domain RAM_34835 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) RAM_34840 PF08443 RimK-like ATP-grasp domain RAM_34850 PF13560 Helix-turn-helix domain RAM_34855 PF12710 haloacid dehalogenase-like hydrolase RAM_34865 PF01370 NAD dependent epimerase/dehydratase family RAM_34870 PF03807 NADP oxidoreductase coenzyme F420-dependent RAM_34875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_34875 PF03466 LysR substrate binding domain RAM_34880 PF00440 Bacterial regulatory proteins, tetR family RAM_34885 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_34890 PF03807 NADP oxidoreductase coenzyme F420-dependent RAM_34895 PF00296 Luciferase-like monooxygenase RAM_34905 PF13460 NADH(P)-binding RAM_34910 PF01638 HxlR-like helix-turn-helix RAM_34915 PF03422 Carbohydrate binding module (family 6) RAM_34915 PF16499 RAM_34915 RAM_34920 PF12680 SnoaL-like domain RAM_34925 PF00296 Luciferase-like monooxygenase RAM_34935 PF00440 Bacterial regulatory proteins, tetR family RAM_34940 PF00118 TCP-1/cpn60 chaperonin family RAM_34945 PF06827 Zinc finger found in FPG and IleRS RAM_34945 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_34950 PF02502 Ribose/Galactose Isomerase RAM_34965 PF00753 Metallo-beta-lactamase superfamily RAM_34970 PF01323 DSBA-like thioredoxin domain RAM_34975 PF01433 Peptidase family M1 RAM_34975 PF11838 ERAP1-like C-terminal domain RAM_34985 PF17174 RAM_34985 RAM_35000 PF14279 RAM_35000 RAM_35005 PF00924 Mechanosensitive ion channel RAM_35010 PF01152 Bacterial-like globin RAM_35015 PF00128 Alpha amylase, catalytic domain RAM_35015 PF11941 Domain of unknown function (DUF3459) RAM_35030 PF13279 Thioesterase-like superfamily RAM_35035 PF05088 RAM_35035 RAM_35045 PF00005 ABC transporter RAM_35045 PF12848 ABC transporter RAM_35050 PF05425 RAM_35050 RAM_35050 PF09678 RAM_35050 RAM_35055 PF00300 Histidine phosphatase superfamily (branch 1) RAM_35060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_35065 PF07690 Major Facilitator Superfamily RAM_35070 PF03995 Peptidase inhibitor family I36 RAM_35080 PF00202 Aminotransferase class-III RAM_35085 PF00732 GMC oxidoreductase RAM_35085 PF05199 GMC oxidoreductase RAM_35090 PF13520 Amino acid permease RAM_35100 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_35100 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_35105 PF00732 GMC oxidoreductase RAM_35105 PF05199 GMC oxidoreductase RAM_35110 PF14534 Domain of unknown function (DUF4440) RAM_35115 PF13474 SnoaL-like domain RAM_35120 PF00578 AhpC/TSA family RAM_35125 PF13474 SnoaL-like domain RAM_35130 PF14534 Domain of unknown function (DUF4440) RAM_35135 PF05988 RAM_35135 RAM_35140 PF00171 Aldehyde dehydrogenase family RAM_35145 PF07690 Major Facilitator Superfamily RAM_35150 PF06441 Epoxide hydrolase N terminus RAM_35155 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_35155 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_35160 PF02627 Carboxymuconolactone decarboxylase family RAM_35170 PF13454 FAD-NAD(P)-binding RAM_35195 PF01039 Carboxyl transferase domain RAM_35205 PF01370 NAD dependent epimerase/dehydratase family RAM_35210 PF01613 Flavin reductase like domain RAM_35215 PF13279 Thioesterase-like superfamily RAM_35220 PF00109 Beta-ketoacyl synthase, N-terminal domain RAM_35220 PF00698 Acyl transferase domain RAM_35220 PF02801 Beta-ketoacyl synthase, C-terminal domain RAM_35220 PF08659 KR domain RAM_35220 PF14765 Polyketide synthase dehydratase RAM_35225 PF08608 Wyosine base formation RAM_35225 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_35230 PF02627 Carboxymuconolactone decarboxylase family RAM_35235 PF00732 GMC oxidoreductase RAM_35235 PF05199 GMC oxidoreductase RAM_35245 PF00067 Cytochrome P450 RAM_35255 PF07593 RAM_35255 RAM_35255 PF13517 Repeat domain in Vibrio, Colwellia, Bradyrhizobium and Shewanella RAM_35260 PF08012 RAM_35260 RAM_35265 PF08012 RAM_35265 RAM_35270 PF12833 Helix-turn-helix domain RAM_35275 PF00486 Transcriptional regulatory protein, C terminal RAM_35275 PF03704 Bacterial transcriptional activator domain RAM_35280 PF01638 HxlR-like helix-turn-helix RAM_35285 PF04542 Sigma-70 region 2 RAM_35285 PF08281 Sigma-70, region 4 RAM_35290 PF03795 YCII-related domain RAM_35300 PF01300 Telomere recombination RAM_35305 PF05988 RAM_35305 RAM_35310 PF07730 Histidine kinase RAM_35315 PF00072 Response regulator receiver domain RAM_35315 PF00196 Bacterial regulatory proteins, luxR family RAM_35325 PF12833 Helix-turn-helix domain RAM_35330 PF00072 Response regulator receiver domain RAM_35330 PF00196 Bacterial regulatory proteins, luxR family RAM_35335 PF07730 Histidine kinase RAM_35345 PF00899 ThiF family RAM_35345 PF02624 YcaO-like family RAM_35350 PF01638 HxlR-like helix-turn-helix RAM_35360 PF04234 CopC domain RAM_35360 PF05425 RAM_35360 RAM_35375 PF02517 CAAX protease self-immunity RAM_35380 PF02583 Metal-sensitive transcriptional repressor RAM_35385 PF00122 E1-E2 ATPase RAM_35385 PF00403 Heavy-metal-associated domain RAM_35385 PF00702 haloacid dehalogenase-like hydrolase RAM_35390 PF00403 Heavy-metal-associated domain RAM_35395 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_35400 PF00561 alpha/beta hydrolase fold RAM_35405 PF00106 short chain dehydrogenase RAM_35410 PF14099 Polysaccharide lyase RAM_35420 PF04055 Radical SAM superfamily RAM_35425 PF14016 RAM_35425 RAM_35440 PF00755 Choline/Carnitine o-acyltransferase RAM_35445 PF07859 alpha/beta hydrolase fold RAM_35450 PF08241 Methyltransferase domain RAM_35455 PF00754 F5/8 type C domain RAM_35455 PF12708 Pectate lyase superfamily protein RAM_35460 PF00754 F5/8 type C domain RAM_35460 PF05048 Periplasmic copper-binding protein (NosD) RAM_35465 PF00072 Response regulator receiver domain RAM_35465 PF00486 Transcriptional regulatory protein, C terminal RAM_35470 PF00512 His Kinase A (phospho-acceptor) domain RAM_35470 PF00672 HAMP domain RAM_35470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_35485 PF00356 Bacterial regulatory proteins, lacI family RAM_35485 PF13377 Periplasmic binding protein-like domain RAM_35490 PF01547 Bacterial extracellular solute-binding protein RAM_35495 PF00528 Binding-protein-dependent transport system inner membrane component RAM_35500 PF00528 Binding-protein-dependent transport system inner membrane component RAM_35505 PF00128 Alpha amylase, catalytic domain RAM_35510 PF00931 NB-ARC domain RAM_35510 PF13424 Tetratricopeptide repeat RAM_35515 PF05402 Coenzyme PQQ synthesis protein D (PqqD) RAM_35515 PF13471 RAM_35515 RAM_35520 PF00733 Asparagine synthase RAM_35530 PF00480 ROK family RAM_35530 PF13412 Winged helix-turn-helix DNA-binding RAM_35540 PF08309 RAM_35540 RAM_35545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_35550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_35550 PF03466 LysR substrate binding domain RAM_35555 PF01370 NAD dependent epimerase/dehydratase family RAM_35560 PF00106 short chain dehydrogenase RAM_35565 PF00082 Subtilase family RAM_35570 PF13673 Acetyltransferase (GNAT) domain RAM_35575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RAM_35575 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_35580 PF01553 Acyltransferase RAM_35585 PF04075 Domain of unknown function (DUF385) RAM_35590 PF00356 Bacterial regulatory proteins, lacI family RAM_35590 PF13377 Periplasmic binding protein-like domain RAM_35595 PF06187 Protein of unknown function (DUF993) RAM_35600 PF01261 Xylose isomerase-like TIM barrel RAM_35605 PF01614 Bacterial transcriptional regulator RAM_35605 PF09339 IclR helix-turn-helix domain RAM_35610 PF00072 Response regulator receiver domain RAM_35610 PF00486 Transcriptional regulatory protein, C terminal RAM_35615 PF00512 His Kinase A (phospho-acceptor) domain RAM_35615 PF00672 HAMP domain RAM_35625 PF13520 Amino acid permease RAM_35630 PF00795 Carbon-nitrogen hydrolase RAM_35635 PF01593 Flavin containing amine oxidoreductase RAM_35645 PF00440 Bacterial regulatory proteins, tetR family RAM_35645 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_35650 PF00561 alpha/beta hydrolase fold RAM_35660 PF13556 PucR C-terminal helix-turn-helix domain RAM_35665 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_35670 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_35675 PF00296 Luciferase-like monooxygenase RAM_35680 PF00108 Thiolase, N-terminal domain RAM_35680 PF02803 Thiolase, C-terminal domain RAM_35685 PF00501 AMP-binding enzyme RAM_35685 PF13193 AMP-binding enzyme C-terminal domain RAM_35690 PF03055 Retinal pigment epithelial membrane protein RAM_35695 PF01638 HxlR-like helix-turn-helix RAM_35700 PF17227 RAM_35700 RAM_35705 PF13483 Beta-lactamase superfamily domain RAM_35710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_35710 PF03466 LysR substrate binding domain RAM_35715 PF13354 Beta-lactamase enzyme family RAM_35720 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_35720 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RAM_35730 PF03301 Tryptophan 2,3-dioxygenase RAM_35735 PF07848 PaaX-like protein RAM_35735 PF08223 PaaX-like protein C-terminal domain RAM_35740 PF02633 Creatinine amidohydrolase RAM_35745 PF00501 AMP-binding enzyme RAM_35745 PF13193 AMP-binding enzyme C-terminal domain RAM_35750 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_35755 PF00378 Enoyl-CoA hydratase/isomerase family RAM_35760 PF07969 Amidohydrolase family RAM_35765 PF13191 AAA ATPase domain RAM_35775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_35780 PF03088 Strictosidine synthase RAM_35785 PF00300 Histidine phosphatase superfamily (branch 1) RAM_35790 PF01636 Phosphotransferase enzyme family RAM_35795 PF00106 short chain dehydrogenase RAM_35805 PF00196 Bacterial regulatory proteins, luxR family RAM_35810 PF14534 Domain of unknown function (DUF4440) RAM_35815 PF00501 AMP-binding enzyme RAM_35815 PF13193 AMP-binding enzyme C-terminal domain RAM_35820 PF00476 DNA polymerase family A RAM_35830 PF00270 DEAD/DEAH box helicase RAM_35830 PF00271 Helicase conserved C-terminal domain RAM_35830 PF04408 Helicase associated domain (HA2) RAM_35830 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RAM_35830 PF11898 RAM_35830 RAM_35840 PF01070 FMN-dependent dehydrogenase RAM_35845 PF03435 Saccharopine dehydrogenase RAM_35850 PF13738 Pyridine nucleotide-disulphide oxidoreductase RAM_35855 PF00440 Bacterial regulatory proteins, tetR family RAM_35855 PF13977 Bacterial transcriptional repressor RAM_35860 PF01374 Glycosyl hydrolase family 46 RAM_35865 PF14716 Helix-hairpin-helix domain RAM_35870 PF12850 Calcineurin-like phosphoesterase superfamily domain RAM_35875 PF00392 Bacterial regulatory proteins, gntR family RAM_35875 PF07729 FCD domain RAM_35880 PF00920 Dehydratase family RAM_35885 PF04294 RAM_35885 RAM_35885 PF12229 Putative peptidoglycan binding domain RAM_35890 PF07690 Major Facilitator Superfamily RAM_35900 PF00990 GGDEF domain RAM_35910 PF00291 Pyridoxal-phosphate dependent enzyme RAM_35915 PF01738 Dienelactone hydrolase family RAM_35930 PF04542 Sigma-70 region 2 RAM_35930 PF08281 Sigma-70, region 4 RAM_35935 PF03795 YCII-related domain RAM_35950 PF01176 Translation initiation factor 1A / IF-1 RAM_35955 PF00583 Acetyltransferase (GNAT) family RAM_35965 PF00155 Aminotransferase class I and II RAM_35965 PF00392 Bacterial regulatory proteins, gntR family RAM_35970 PF07690 Major Facilitator Superfamily RAM_35975 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_35975 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RAM_35980 PF04978 Protein of unknown function (DUF664) RAM_35985 PF02585 GlcNAc-PI de-N-acetylase RAM_35995 PF01008 Initiation factor 2 subunit family RAM_36005 PF13370 4Fe-4S single cluster domain RAM_36010 PF00067 Cytochrome P450 RAM_36015 PF03551 Transcriptional regulator PadR-like family RAM_36020 PF00067 Cytochrome P450 RAM_36025 PF13370 4Fe-4S single cluster domain RAM_36030 PF00440 Bacterial regulatory proteins, tetR family RAM_36035 PF01565 FAD binding domain RAM_36035 PF02913 FAD linked oxidases, C-terminal domain RAM_36035 PF13183 4Fe-4S dicluster domain RAM_36040 PF07730 Histidine kinase RAM_36040 PF13185 GAF domain RAM_36045 PF00072 Response regulator receiver domain RAM_36045 PF00196 Bacterial regulatory proteins, luxR family RAM_36050 PF02811 PHP domain RAM_36055 PF00005 ABC transporter RAM_36060 PF00005 ABC transporter RAM_36060 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_36065 PF02653 RAM_36065 RAM_36070 PF02653 RAM_36070 RAM_36075 PF13458 Periplasmic binding protein RAM_36085 PF13302 Acetyltransferase (GNAT) domain RAM_36090 PF00754 F5/8 type C domain RAM_36090 PF07971 Glycosyl hydrolase family 92 RAM_36095 PF01205 Uncharacterized protein family UPF0029 RAM_36095 PF09186 Domain of unknown function (DUF1949) RAM_36100 PF00310 Glutamine amidotransferases class-II RAM_36100 PF01493 GXGXG motif RAM_36100 PF01645 Conserved region in glutamate synthase RAM_36100 PF04898 Glutamate synthase central domain RAM_36105 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_36105 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RAM_36110 PF01370 NAD dependent epimerase/dehydratase family RAM_36115 PF00440 Bacterial regulatory proteins, tetR family RAM_36125 PF00480 ROK family RAM_36130 PF09489 RAM_36130 RAM_36135 PF09490 RAM_36135 RAM_36145 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_36145 PF07685 CobB/CobQ-like glutamine amidotransferase domain RAM_36150 PF03186 RAM_36150 RAM_36155 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase RAM_36160 PF02277 Phosphoribosyltransferase RAM_36165 PF02654 RAM_36165 RAM_36170 PF08279 HTH domain RAM_36170 PF13280 RAM_36170 RAM_36175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_36180 PF00155 Aminotransferase class I and II RAM_36185 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RAM_36185 PF07685 CobB/CobQ-like glutamine amidotransferase domain RAM_36190 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP RAM_36195 PF01078 Magnesium chelatase, subunit ChlI RAM_36195 PF13519 von Willebrand factor type A domain RAM_36200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_36205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_36210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_36215 PF02571 RAM_36215 RAM_36220 PF00881 Nitroreductase family RAM_36225 PF04602 Mycobacterial cell wall arabinan synthesis protein RAM_36225 PF14896 EmbC C-terminal domain RAM_36230 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_36235 PF02570 Precorrin-8X methylmutase RAM_36240 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RAM_36250 PF00005 ABC transporter RAM_36255 PF01061 RAM_36255 RAM_36260 PF01381 Helix-turn-helix RAM_36270 PF02514 RAM_36270 RAM_36280 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_36280 PF01872 RibD C-terminal domain RAM_36295 PF00171 Aldehyde dehydrogenase family RAM_36300 PF13398 Peptidase M50B-like RAM_36305 PF13546 RAM_36305 RAM_36315 PF07687 Peptidase dimerisation domain RAM_36320 PF13365 Trypsin-like peptidase domain RAM_36325 PF11528 Protein of unknown function (DUF3224) RAM_36330 PF05872 RAM_36330 RAM_36335 PF00929 Exonuclease RAM_36340 PF07690 Major Facilitator Superfamily RAM_36345 PF03734 L,D-transpeptidase catalytic domain RAM_36350 PF00589 Phage integrase family RAM_36360 PF01555 DNA methylase RAM_36370 PF03704 Bacterial transcriptional activator domain RAM_36405 PF00437 Type II/IV secretion system protein RAM_36415 PF08666 SAF domain RAM_36440 PF01494 FAD binding domain RAM_36460 PF01638 HxlR-like helix-turn-helix RAM_36470 PF01478 Type IV leader peptidase family RAM_36480 PF04149 RAM_36480 RAM_36495 PF13560 Helix-turn-helix domain RAM_36505 PF13560 Helix-turn-helix domain RAM_36525 PF00293 NUDIX domain RAM_36560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36560 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_36560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36565 PF00107 Zinc-binding dehydrogenase RAM_36565 PF08240 Alcohol dehydrogenase GroES-like domain RAM_36570 PF00676 Dehydrogenase E1 component RAM_36570 PF02779 Transketolase, pyrimidine binding domain RAM_36570 PF02780 Transketolase, C-terminal domain RAM_36575 PF00501 AMP-binding enzyme RAM_36575 PF13193 AMP-binding enzyme C-terminal domain RAM_36580 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_36585 PF00378 Enoyl-CoA hydratase/isomerase family RAM_36590 PF04199 Putative cyclase RAM_36605 PF07690 Major Facilitator Superfamily RAM_36610 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_36620 PF01613 Flavin reductase like domain RAM_36625 PF03328 HpcH/HpaI aldolase/citrate lyase family RAM_36630 PF00296 Luciferase-like monooxygenase RAM_36635 PF00392 Bacterial regulatory proteins, gntR family RAM_36635 PF07729 FCD domain RAM_36640 PF00171 Aldehyde dehydrogenase family RAM_36645 PF02515 CoA-transferase family III RAM_36645 PF13577 SnoaL-like domain RAM_36650 PF13577 SnoaL-like domain RAM_36655 PF04199 Putative cyclase RAM_36660 PF00106 short chain dehydrogenase RAM_36665 PF13738 Pyridine nucleotide-disulphide oxidoreductase RAM_36675 PF00067 Cytochrome P450 RAM_36680 PF13370 4Fe-4S single cluster domain RAM_36685 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_36685 PF14759 Reductase C-terminal RAM_36690 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_36695 PF02627 Carboxymuconolactone decarboxylase family RAM_36700 PF13577 SnoaL-like domain RAM_36705 PF00440 Bacterial regulatory proteins, tetR family RAM_36715 PF00440 Bacterial regulatory proteins, tetR family RAM_36720 PF08240 Alcohol dehydrogenase GroES-like domain RAM_36720 PF13602 Zinc-binding dehydrogenase RAM_36725 PF13564 RAM_36725 RAM_36730 PF00296 Luciferase-like monooxygenase RAM_36735 PF13460 NADH(P)-binding RAM_36750 PF00005 ABC transporter RAM_36755 PF00005 ABC transporter RAM_36755 PF02653 RAM_36755 RAM_36755 PF12399 Branched-chain amino acid ATP-binding cassette transporter RAM_36760 PF13458 Periplasmic binding protein RAM_36770 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36770 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_36770 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36775 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36775 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36780 PF00106 short chain dehydrogenase RAM_36785 PF00392 Bacterial regulatory proteins, gntR family RAM_36785 PF07729 FCD domain RAM_36790 PF13452 N-terminal half of MaoC dehydratase RAM_36795 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_36800 PF00107 Zinc-binding dehydrogenase RAM_36800 PF08240 Alcohol dehydrogenase GroES-like domain RAM_36805 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36805 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_36805 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36810 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36810 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36815 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_36820 PF00067 Cytochrome P450 RAM_36825 PF00378 Enoyl-CoA hydratase/isomerase family RAM_36830 PF01636 Phosphotransferase enzyme family RAM_36835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36835 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_36835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36840 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_36845 PF00805 Pentapeptide repeats (8 copies) RAM_36850 PF02515 CoA-transferase family III RAM_36855 PF13459 4Fe-4S single cluster domain RAM_36860 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_36865 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_36875 PF04909 Amidohydrolase RAM_36880 PF01796 RAM_36880 RAM_36880 PF12172 Rubredoxin-like zinc ribbon domain (DUF35_N) RAM_36890 PF00890 FAD binding domain RAM_36895 PF01614 Bacterial transcriptional regulator RAM_36895 PF09339 IclR helix-turn-helix domain RAM_36900 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_36905 PF00561 alpha/beta hydrolase fold RAM_36910 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_36915 PF01613 Flavin reductase like domain RAM_36920 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_36925 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_36930 PF00108 Thiolase, N-terminal domain RAM_36930 PF02803 Thiolase, C-terminal domain RAM_36935 PF02515 CoA-transferase family III RAM_36940 PF00378 Enoyl-CoA hydratase/isomerase family RAM_36945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_36945 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_36945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_36950 PF00106 short chain dehydrogenase RAM_36955 PF00440 Bacterial regulatory proteins, tetR family RAM_36960 PF00501 AMP-binding enzyme RAM_36960 PF13193 AMP-binding enzyme C-terminal domain RAM_36970 PF00501 AMP-binding enzyme RAM_36970 PF13193 AMP-binding enzyme C-terminal domain RAM_36975 PF07681 RAM_36975 RAM_36980 PF00378 Enoyl-CoA hydratase/isomerase family RAM_36985 PF00108 Thiolase, N-terminal domain RAM_36985 PF02803 Thiolase, C-terminal domain RAM_36990 PF00378 Enoyl-CoA hydratase/isomerase family RAM_36995 PF00296 Luciferase-like monooxygenase RAM_37000 PF07969 Amidohydrolase family RAM_37005 PF02515 CoA-transferase family III RAM_37010 PF00378 Enoyl-CoA hydratase/isomerase family RAM_37020 PF00809 Pterin binding enzyme RAM_37025 PF04909 Amidohydrolase RAM_37030 PF00171 Aldehyde dehydrogenase family RAM_37035 PF02129 X-Pro dipeptidyl-peptidase (S15 family) RAM_37035 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_37040 PF00067 Cytochrome P450 RAM_37045 PF13370 4Fe-4S single cluster domain RAM_37050 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_37050 PF14759 Reductase C-terminal RAM_37055 PF02627 Carboxymuconolactone decarboxylase family RAM_37055 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_37060 PF13450 NAD(P)-binding Rossmann-like domain RAM_37065 PF00743 Flavin-binding monooxygenase-like RAM_37075 PF13577 SnoaL-like domain RAM_37080 PF13577 SnoaL-like domain RAM_37085 PF00106 short chain dehydrogenase RAM_37100 PF00440 Bacterial regulatory proteins, tetR family RAM_37120 PF00676 Dehydrogenase E1 component RAM_37125 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_37130 PF00067 Cytochrome P450 RAM_37135 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_37135 PF14759 Reductase C-terminal RAM_37140 PF13370 4Fe-4S single cluster domain RAM_37145 PF00107 Zinc-binding dehydrogenase RAM_37145 PF08240 Alcohol dehydrogenase GroES-like domain RAM_37155 PF07730 Histidine kinase RAM_37160 PF00072 Response regulator receiver domain RAM_37160 PF00196 Bacterial regulatory proteins, luxR family RAM_37165 PF00501 AMP-binding enzyme RAM_37170 PF00501 AMP-binding enzyme RAM_37175 PF13556 PucR C-terminal helix-turn-helix domain RAM_37180 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_37180 PF13378 Enolase C-terminal domain-like RAM_37185 PF07690 Major Facilitator Superfamily RAM_37190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_37190 PF03466 LysR substrate binding domain RAM_37195 PF01638 HxlR-like helix-turn-helix RAM_37200 PF01323 DSBA-like thioredoxin domain RAM_37210 PF13460 NADH(P)-binding RAM_37215 PF13556 PucR C-terminal helix-turn-helix domain RAM_37220 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_37225 PF07690 Major Facilitator Superfamily RAM_37230 PF00753 Metallo-beta-lactamase superfamily RAM_37235 PF06439 Domain of Unknown Function (DUF1080) RAM_37240 PF01261 Xylose isomerase-like TIM barrel RAM_37240 PF07582 AP endonuclease family 2 C terminus RAM_37245 PF01261 Xylose isomerase-like TIM barrel RAM_37255 PF03928 Domain of unknown function (DUF336) RAM_37260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_37265 PF07690 Major Facilitator Superfamily RAM_37270 PF00356 Bacterial regulatory proteins, lacI family RAM_37270 PF13377 Periplasmic binding protein-like domain RAM_37280 PF13416 Bacterial extracellular solute-binding protein RAM_37285 PF00528 Binding-protein-dependent transport system inner membrane component RAM_37290 PF00528 Binding-protein-dependent transport system inner membrane component RAM_37295 PF14871 RAM_37295 RAM_37300 PF12697 Alpha/beta hydrolase family RAM_37305 PF00392 Bacterial regulatory proteins, gntR family RAM_37305 PF07729 FCD domain RAM_37310 PF00561 alpha/beta hydrolase fold RAM_37315 PF08532 Beta-galactosidase trimerisation domain RAM_37315 PF14871 RAM_37315 RAM_37325 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RAM_37325 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RAM_37330 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_37330 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_37330 PF14310 Fibronectin type III-like domain RAM_37335 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_37340 PF02558 Ketopantoate reductase PanE/ApbA RAM_37340 PF08546 Ketopantoate reductase PanE/ApbA C terminal RAM_37345 PF00378 Enoyl-CoA hydratase/isomerase family RAM_37350 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RAM_37350 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RAM_37355 PF04909 Amidohydrolase RAM_37360 PF02627 Carboxymuconolactone decarboxylase family RAM_37365 PF02515 CoA-transferase family III RAM_37370 PF13417 Glutathione S-transferase, N-terminal domain RAM_37375 PF00392 Bacterial regulatory proteins, gntR family RAM_37375 PF07702 UTRA domain RAM_37380 PF07690 Major Facilitator Superfamily RAM_37385 PF05681 RAM_37385 RAM_37390 PF05683 Fumarase C-terminus RAM_37395 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_37395 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_37405 PF02384 N-6 DNA Methylase RAM_37445 PF14386 RAM_37445 RAM_37450 PF02195 ParB-like nuclease domain RAM_37455 PF13814 RAM_37455 RAM_37470 PF11774 Lsr2 RAM_37485 PF00415 Regulator of chromosome condensation (RCC1) repeat RAM_37485 PF05593 RAM_37485 RAM_37490 PF00877 NlpC/P60 family RAM_37490 PF01464 Transglycosylase SLT domain RAM_37500 PF12846 AAA-like domain RAM_37515 PF12642 Conjugative transposon protein TcpC RAM_37575 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_37585 PF00809 Pterin binding enzyme RAM_37590 PF01717 Cobalamin-independent synthase, Catalytic domain RAM_37595 PF08305 NPCBM/NEW2 domain RAM_37635 PF01381 Helix-turn-helix RAM_37635 PF06114 Domain of unknown function (DUF955) RAM_37645 PF10935 RAM_37645 RAM_37650 PF00665 Integrase core domain RAM_37650 PF13276 RAM_37650 RAM_37655 PF01527 Transposase RAM_37660 PF00440 Bacterial regulatory proteins, tetR family RAM_37665 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_37670 PF13460 NADH(P)-binding RAM_37675 PF12840 Helix-turn-helix domain RAM_37685 PF13460 NADH(P)-binding RAM_37690 PF14534 Domain of unknown function (DUF4440) RAM_37710 PF00296 Luciferase-like monooxygenase RAM_37715 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_37720 PF02805 Metal binding domain of Ada RAM_37720 PF12833 Helix-turn-helix domain RAM_37725 PF00067 Cytochrome P450 RAM_37730 PF04542 Sigma-70 region 2 RAM_37730 PF08281 Sigma-70, region 4 RAM_37735 PF01565 FAD binding domain RAM_37735 PF08031 Berberine and berberine like RAM_37740 PF00296 Luciferase-like monooxygenase RAM_37745 PF01872 RibD C-terminal domain RAM_37750 PF07690 Major Facilitator Superfamily RAM_37770 PF13855 Leucine rich repeat RAM_37775 PF05593 RAM_37775 RAM_37775 PF07591 Pretoxin HINT domain RAM_37780 PF13385 Concanavalin A-like lectin/glucanases superfamily RAM_37790 PF00553 Cellulose binding domain RAM_37795 PF13489 Methyltransferase domain RAM_37800 PF00144 Beta-lactamase RAM_37805 PF00440 Bacterial regulatory proteins, tetR family RAM_37810 PF12833 Helix-turn-helix domain RAM_37810 PF12852 Cupin RAM_37815 PF13460 NADH(P)-binding RAM_37820 PF00156 Phosphoribosyl transferase domain RAM_37825 PF07411 Domain of unknown function (DUF1508) RAM_37830 PF12849 PBP superfamily domain RAM_37835 PF04203 Sortase family RAM_37845 PF00528 Binding-protein-dependent transport system inner membrane component RAM_37850 PF00528 Binding-protein-dependent transport system inner membrane component RAM_37855 PF00005 ABC transporter RAM_37860 PF12849 PBP superfamily domain RAM_37870 PF12849 PBP superfamily domain RAM_37875 PF00440 Bacterial regulatory proteins, tetR family RAM_37880 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_37880 PF08028 Acyl-CoA dehydrogenase, C-terminal domain RAM_37885 PF00089 Trypsin RAM_37895 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_37905 PF01425 Amidase RAM_37915 PF08240 Alcohol dehydrogenase GroES-like domain RAM_37920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_37920 PF03466 LysR substrate binding domain RAM_37925 PF00703 Glycosyl hydrolases family 2 RAM_37925 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_37925 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_37925 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_37935 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_37935 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_37935 PF14310 Fibronectin type III-like domain RAM_37940 PF01370 NAD dependent epimerase/dehydratase family RAM_37940 PF08338 Domain of unknown function (DUF1731) RAM_37945 PF02148 Zn-finger in ubiquitin-hydrolases and other protein RAM_37950 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_37955 PF01061 RAM_37955 RAM_37960 PF00005 ABC transporter RAM_37965 PF00041 Fibronectin type III domain RAM_37965 PF00553 Cellulose binding domain RAM_37965 PF00759 Glycosyl hydrolase family 9 RAM_37965 PF02018 Carbohydrate binding domain RAM_37965 PF02927 N-terminal ig-like domain of cellulase RAM_37970 PF00652 Ricin-type beta-trefoil lectin domain RAM_37970 PF16499 RAM_37970 RAM_37985 PF03861 ANTAR domain RAM_38005 PF01522 Polysaccharide deacetylase RAM_38010 PF04932 RAM_38010 RAM_38015 PF13439 Glycosyltransferase Family 4 RAM_38015 PF13692 Glycosyl transferases group 1 RAM_38025 PF09594 RAM_38025 RAM_38030 PF13440 RAM_38030 RAM_38035 PF13439 Glycosyltransferase Family 4 RAM_38035 PF13692 Glycosyl transferases group 1 RAM_38040 PF13439 Glycosyltransferase Family 4 RAM_38040 PF13692 Glycosyl transferases group 1 RAM_38045 PF14885 RAM_38045 RAM_38050 PF02397 RAM_38050 RAM_38055 PF00535 Glycosyl transferase family 2 RAM_38060 PF01593 Flavin containing amine oxidoreductase RAM_38065 PF02350 UDP-N-acetylglucosamine 2-epimerase RAM_38070 PF01186 RAM_38070 RAM_38075 PF14417 RAM_38075 RAM_38080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_38085 PF13229 Right handed beta helix region RAM_38090 PF00703 Glycosyl hydrolases family 2 RAM_38090 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_38090 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_38100 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_38105 PF00041 Fibronectin type III domain RAM_38105 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_38105 PF00553 Cellulose binding domain RAM_38105 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_38110 PF07745 Glycosyl hydrolase family 53 RAM_38115 PF00356 Bacterial regulatory proteins, lacI family RAM_38115 PF13377 Periplasmic binding protein-like domain RAM_38125 PF00528 Binding-protein-dependent transport system inner membrane component RAM_38130 PF00528 Binding-protein-dependent transport system inner membrane component RAM_38135 PF01547 Bacterial extracellular solute-binding protein RAM_38145 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_38155 PF13466 STAS domain RAM_38165 PF00440 Bacterial regulatory proteins, tetR family RAM_38165 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_38170 PF12697 Alpha/beta hydrolase family RAM_38175 PF07228 Stage II sporulation protein E (SpoIIE) RAM_38180 PF13466 STAS domain RAM_38185 PF00701 Dihydrodipicolinate synthetase family RAM_38190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_38190 PF03466 LysR substrate binding domain RAM_38195 PF13649 Methyltransferase domain RAM_38205 PF01380 SIS domain RAM_38205 PF13522 Glutamine amidotransferase domain RAM_38210 PF15892 RAM_38210 RAM_38215 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_38215 PF14759 Reductase C-terminal RAM_38220 PF13370 4Fe-4S single cluster domain RAM_38225 PF00440 Bacterial regulatory proteins, tetR family RAM_38230 PF00067 Cytochrome P450 RAM_38235 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_38240 PF00440 Bacterial regulatory proteins, tetR family RAM_38245 PF00248 Aldo/keto reductase family RAM_38250 PF00296 Luciferase-like monooxygenase RAM_38255 PF13463 Winged helix DNA-binding domain RAM_38260 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_38265 PF00041 Fibronectin type III domain RAM_38265 PF03662 Glycosyl hydrolase family 79, N-terminal domain RAM_38270 PF02811 PHP domain RAM_38270 PF07733 Bacterial DNA polymerase III alpha subunit RAM_38270 PF14579 Helix-hairpin-helix motif RAM_38275 PF04542 Sigma-70 region 2 RAM_38275 PF08281 Sigma-70, region 4 RAM_38280 PF03795 YCII-related domain RAM_38285 PF01872 RibD C-terminal domain RAM_38290 PF01276 Orn/Lys/Arg decarboxylase, major domain RAM_38290 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RAM_38290 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RAM_38305 PF04072 Leucine carboxyl methyltransferase RAM_38310 PF00561 alpha/beta hydrolase fold RAM_38310 PF08386 TAP-like protein RAM_38315 PF00392 Bacterial regulatory proteins, gntR family RAM_38320 PF00005 ABC transporter RAM_38330 PF03403 Platelet-activating factor acetylhydrolase, isoform II RAM_38335 PF03403 Platelet-activating factor acetylhydrolase, isoform II RAM_38340 PF10503 Esterase PHB depolymerase RAM_38345 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_38350 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_38355 PF00210 Ferritin-like domain RAM_38360 PF03061 Thioesterase superfamily RAM_38365 PF03707 RAM_38365 RAM_38370 PF03029 Conserved hypothetical ATP binding protein RAM_38375 PF05331 RAM_38375 RAM_38380 PF03259 Roadblock/LC7 domain RAM_38385 PF00672 HAMP domain RAM_38385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_38390 PF01022 Bacterial regulatory protein, arsR family RAM_38400 PF01370 NAD dependent epimerase/dehydratase family RAM_38405 PF02566 OsmC-like protein RAM_38415 PF00561 alpha/beta hydrolase fold RAM_38420 PF00196 Bacterial regulatory proteins, luxR family RAM_38420 PF13191 AAA ATPase domain RAM_38425 PF07519 Tannase and feruloyl esterase RAM_38430 PF00248 Aldo/keto reductase family RAM_38435 PF01979 Amidohydrolase family RAM_38445 PF03861 ANTAR domain RAM_38445 PF13185 GAF domain RAM_38450 PF11338 RAM_38450 RAM_38455 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_38455 PF14587 O-Glycosyl hydrolase family 30 RAM_38460 PF01301 Glycosyl hydrolases family 35 RAM_38465 PF06964 Alpha-L-arabinofuranosidase C-terminus RAM_38470 PF01547 Bacterial extracellular solute-binding protein RAM_38475 PF00528 Binding-protein-dependent transport system inner membrane component RAM_38480 PF00528 Binding-protein-dependent transport system inner membrane component RAM_38485 PF00356 Bacterial regulatory proteins, lacI family RAM_38485 PF13377 Periplasmic binding protein-like domain RAM_38495 PF01323 DSBA-like thioredoxin domain RAM_38510 PF13602 Zinc-binding dehydrogenase RAM_38515 PF00440 Bacterial regulatory proteins, tetR family RAM_38515 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_38520 PF00296 Luciferase-like monooxygenase RAM_38525 PF02469 Fasciclin domain RAM_38530 PF00174 Oxidoreductase molybdopterin binding domain RAM_38535 PF10099 RAM_38535 RAM_38535 PF13490 Putative zinc-finger RAM_38540 PF04542 Sigma-70 region 2 RAM_38540 PF08281 Sigma-70, region 4 RAM_38545 PF04686 Streptomyces sporulation and cell division protein, SsgA RAM_38550 PF00501 AMP-binding enzyme RAM_38550 PF13193 AMP-binding enzyme C-terminal domain RAM_38555 PF00920 Dehydratase family RAM_38560 PF01113 Dihydrodipicolinate reductase, N-terminus RAM_38565 PF02627 Carboxymuconolactone decarboxylase family RAM_38570 PF05199 GMC oxidoreductase RAM_38575 PF01479 S4 domain RAM_38585 PF04542 Sigma-70 region 2 RAM_38585 PF08281 Sigma-70, region 4 RAM_38590 PF07883 Cupin domain RAM_38595 PF04542 Sigma-70 region 2 RAM_38595 PF04545 Sigma-70, region 4 RAM_38610 PF01979 Amidohydrolase family RAM_38615 PF00563 EAL domain RAM_38615 PF00990 GGDEF domain RAM_38620 PF04199 Putative cyclase RAM_38635 PF07690 Major Facilitator Superfamily RAM_38640 PF00704 Glycosyl hydrolases family 18 RAM_38650 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_38655 PF13302 Acetyltransferase (GNAT) domain RAM_38660 PF04075 Domain of unknown function (DUF385) RAM_38665 PF13649 Methyltransferase domain RAM_38670 PF02426 Muconolactone delta-isomerase RAM_38670 PF13556 PucR C-terminal helix-turn-helix domain RAM_38675 PF11188 RAM_38675 RAM_38680 PF13443 Cro/C1-type HTH DNA-binding domain RAM_38690 PF11271 RAM_38690 RAM_38695 PF08241 Methyltransferase domain RAM_38700 PF00534 Glycosyl transferases group 1 RAM_38700 PF13439 Glycosyltransferase Family 4 RAM_38725 PF00754 F5/8 type C domain RAM_38725 PF11847 RAM_38725 RAM_38730 PF13578 Methyltransferase domain RAM_38740 PF00092 von Willebrand factor type A domain RAM_38740 PF13531 Bacterial extracellular solute-binding protein RAM_38750 PF00155 Aminotransferase class I and II RAM_38750 PF00392 Bacterial regulatory proteins, gntR family RAM_38755 PF02627 Carboxymuconolactone decarboxylase family RAM_38760 PF07690 Major Facilitator Superfamily RAM_38765 PF07690 Major Facilitator Superfamily RAM_38770 PF01047 MarR family RAM_38775 PF01609 Transposase DDE domain RAM_38775 PF13006 RAM_38775 RAM_38780 PF13180 PDZ domain RAM_38780 PF13365 Trypsin-like peptidase domain RAM_38785 PF01266 FAD dependent oxidoreductase RAM_38785 PF01571 Aminomethyltransferase folate-binding domain RAM_38785 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_38785 PF16350 RAM_38785 RAM_38790 PF00551 Formyl transferase RAM_38795 PF04268 Sarcosine oxidase, gamma subunit family RAM_38800 PF01571 Aminomethyltransferase folate-binding domain RAM_38800 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_38800 PF13510 2Fe-2S iron-sulfur cluster binding domain RAM_38805 PF04267 Sarcosine oxidase, delta subunit family RAM_38810 PF01266 FAD dependent oxidoreductase RAM_38815 PF00464 Serine hydroxymethyltransferase RAM_38820 PF00392 Bacterial regulatory proteins, gntR family RAM_38820 PF07729 FCD domain RAM_38825 PF00355 Rieske [2Fe-2S] domain RAM_38825 PF00848 Ring hydroxylating alpha subunit (catalytic domain) RAM_38830 PF00440 Bacterial regulatory proteins, tetR family RAM_38835 PF00171 Aldehyde dehydrogenase family RAM_38840 PF13520 Amino acid permease RAM_38845 PF00732 GMC oxidoreductase RAM_38845 PF05199 GMC oxidoreductase RAM_38850 PF01609 Transposase DDE domain RAM_38850 PF13006 RAM_38850 RAM_38855 PF00355 Rieske [2Fe-2S] domain RAM_38860 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_38860 PF14759 Reductase C-terminal RAM_38870 PF00561 alpha/beta hydrolase fold RAM_38875 PF00440 Bacterial regulatory proteins, tetR family RAM_38890 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAM_38890 PF00364 Biotin-requiring enzyme RAM_38890 PF02817 e3 binding domain RAM_38895 PF02779 Transketolase, pyrimidine binding domain RAM_38895 PF02780 Transketolase, C-terminal domain RAM_38900 PF00676 Dehydrogenase E1 component RAM_38905 PF01037 AsnC family RAM_38905 PF13412 Winged helix-turn-helix DNA-binding RAM_38910 PF00583 Acetyltransferase (GNAT) family RAM_38915 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_38915 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_38930 PF00072 Response regulator receiver domain RAM_38930 PF00486 Transcriptional regulatory protein, C terminal RAM_38935 PF00512 His Kinase A (phospho-acceptor) domain RAM_38935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_38940 PF01494 FAD binding domain RAM_38945 PF01614 Bacterial transcriptional regulator RAM_38945 PF09339 IclR helix-turn-helix domain RAM_38950 PF00704 Glycosyl hydrolases family 18 RAM_38950 PF02018 Carbohydrate binding domain RAM_38965 PF00069 Protein kinase domain RAM_38985 PF08327 Activator of Hsp90 ATPase homolog 1-like protein RAM_38985 PF12840 Helix-turn-helix domain RAM_38990 PF09375 Imelysin RAM_38995 PF04261 Dyp-type peroxidase family RAM_39000 PF04185 Phosphoesterase family RAM_39005 PF13581 Histidine kinase-like ATPase domain RAM_39010 PF13466 STAS domain RAM_39015 PF00072 Response regulator receiver domain RAM_39020 PF00512 His Kinase A (phospho-acceptor) domain RAM_39020 PF00672 HAMP domain RAM_39020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_39020 PF05227 CHASE3 domain RAM_39025 PF00072 Response regulator receiver domain RAM_39025 PF07228 Stage II sporulation protein E (SpoIIE) RAM_39030 PF10009 RAM_39030 RAM_39050 PF03583 Secretory lipase RAM_39065 PF13556 PucR C-terminal helix-turn-helix domain RAM_39070 PF13556 PucR C-terminal helix-turn-helix domain RAM_39075 PF00561 alpha/beta hydrolase fold RAM_39080 PF13556 PucR C-terminal helix-turn-helix domain RAM_39085 PF13556 PucR C-terminal helix-turn-helix domain RAM_39095 PF08659 KR domain RAM_39115 PF02470 RAM_39115 RAM_39120 PF02470 RAM_39120 RAM_39125 PF02470 RAM_39125 RAM_39125 PF11887 RAM_39125 RAM_39130 PF02470 RAM_39130 RAM_39135 PF02470 RAM_39135 RAM_39140 PF02470 RAM_39140 RAM_39140 PF11887 RAM_39140 RAM_39145 PF02405 RAM_39145 RAM_39150 PF02405 RAM_39150 RAM_39165 PF00005 ABC transporter RAM_39170 PF01061 RAM_39170 RAM_39185 PF12770 RAM_39185 RAM_39185 PF13424 Tetratricopeptide repeat RAM_39195 PF00144 Beta-lactamase RAM_39215 PF00293 NUDIX domain RAM_39220 PF12697 Alpha/beta hydrolase family RAM_39225 PF00440 Bacterial regulatory proteins, tetR family RAM_39225 PF13977 Bacterial transcriptional repressor RAM_39230 PF01872 RibD C-terminal domain RAM_39255 PF01636 Phosphotransferase enzyme family RAM_39260 PF00440 Bacterial regulatory proteins, tetR family RAM_39265 PF00296 Luciferase-like monooxygenase RAM_39270 PF01814 Hemerythrin HHE cation binding domain RAM_39270 PF04075 Domain of unknown function (DUF385) RAM_39280 PF00501 AMP-binding enzyme RAM_39280 PF13193 AMP-binding enzyme C-terminal domain RAM_39285 PF00384 Molybdopterin oxidoreductase RAM_39285 PF01568 Molydopterin dinucleotide binding domain RAM_39285 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_39290 PF00296 Luciferase-like monooxygenase RAM_39295 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_39300 PF01638 HxlR-like helix-turn-helix RAM_39305 PF07883 Cupin domain RAM_39310 PF01965 DJ-1/PfpI family RAM_39310 PF12833 Helix-turn-helix domain RAM_39315 PF00440 Bacterial regulatory proteins, tetR family RAM_39315 PF13977 Bacterial transcriptional repressor RAM_39320 PF00583 Acetyltransferase (GNAT) family RAM_39335 PF07690 Major Facilitator Superfamily RAM_39340 PF00561 alpha/beta hydrolase fold RAM_39350 PF03050 RAM_39350 RAM_39350 PF13005 RAM_39350 RAM_39360 PF01844 HNH endonuclease RAM_39360 PF02720 RAM_39360 RAM_39365 PF00583 Acetyltransferase (GNAT) family RAM_39375 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_39380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_39380 PF03466 LysR substrate binding domain RAM_39385 PF13406 Transglycosylase SLT domain RAM_39395 PF00440 Bacterial regulatory proteins, tetR family RAM_39395 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_39400 PF09350 RAM_39400 RAM_39405 PF02096 60Kd inner membrane protein RAM_39415 PF00149 Calcineurin-like phosphoesterase RAM_39420 PF12697 Alpha/beta hydrolase family RAM_39425 PF01661 Macro domain RAM_39430 PF13419 Haloacid dehalogenase-like hydrolase RAM_39435 PF00293 NUDIX domain RAM_39440 PF07681 RAM_39440 RAM_39445 PF03029 Conserved hypothetical ATP binding protein RAM_39450 PF05331 RAM_39450 RAM_39455 PF03259 Roadblock/LC7 domain RAM_39460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_39460 PF08376 Nitrate and nitrite sensing RAM_39470 PF00501 AMP-binding enzyme RAM_39475 PF00106 short chain dehydrogenase RAM_39480 PF05977 Transmembrane secretion effector RAM_39485 PF00990 GGDEF domain RAM_39495 PF09056 Prokaryotic phospholipase A2 RAM_39500 PF03816 Cell envelope-related transcriptional attenuator domain RAM_39500 PF13399 LytR cell envelope-related transcriptional attenuator RAM_39505 PF13560 Helix-turn-helix domain RAM_39510 PF00743 Flavin-binding monooxygenase-like RAM_39515 PF00440 Bacterial regulatory proteins, tetR family RAM_39525 PF12277 RAM_39525 RAM_39530 PF03435 Saccharopine dehydrogenase RAM_39535 PF01965 DJ-1/PfpI family RAM_39535 PF12833 Helix-turn-helix domain RAM_39540 PF00248 Aldo/keto reductase family RAM_39545 PF06719 RAM_39545 RAM_39545 PF12833 Helix-turn-helix domain RAM_39565 PF00578 AhpC/TSA family RAM_39570 PF05729 NACHT domain RAM_39575 PF01725 Ham1 family RAM_39580 PF01138 3' exoribonuclease family, domain 1 RAM_39580 PF03725 3' exoribonuclease family, domain 2 RAM_39585 PF12706 Beta-lactamase superfamily domain RAM_39590 PF01177 Asp/Glu/Hydantoin racemase RAM_39595 PF01694 Rhomboid family RAM_39600 PF00797 N-acetyltransferase RAM_39605 PF01177 Asp/Glu/Hydantoin racemase RAM_39610 PF00753 Metallo-beta-lactamase superfamily RAM_39620 PF00291 Pyridoxal-phosphate dependent enzyme RAM_39625 PF02597 ThiS family RAM_39630 PF14464 Prokaryotic homologs of the JAB domain RAM_39640 PF03576 Peptidase family S58 RAM_39645 PF09438 RAM_39645 RAM_39650 PF02617 ATP-dependent Clp protease adaptor protein ClpS RAM_39655 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RAM_39660 PF00857 Isochorismatase family RAM_39665 PF01081 KDPG and KHG aldolase RAM_39675 PF02632 BioY family RAM_39680 PF00270 DEAD/DEAH box helicase RAM_39680 PF13307 Helicase C-terminal domain RAM_39695 PF02566 OsmC-like protein RAM_39700 PF01981 Peptidyl-tRNA hydrolase PTH2 RAM_39705 PF12710 haloacid dehalogenase-like hydrolase RAM_39705 PF13740 ACT domain RAM_39710 PF00115 Cytochrome C and Quinol oxidase polypeptide I RAM_39715 PF01636 Phosphotransferase enzyme family RAM_39720 PF12697 Alpha/beta hydrolase family RAM_39725 PF13302 Acetyltransferase (GNAT) domain RAM_39735 PF01527 Transposase RAM_39740 PF00665 Integrase core domain RAM_39740 PF13276 RAM_39740 RAM_39745 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase RAM_39750 PF09723 RAM_39750 RAM_39755 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_39760 PF01037 AsnC family RAM_39760 PF13412 Winged helix-turn-helix DNA-binding RAM_39765 PF13238 AAA domain RAM_39770 PF01037 AsnC family RAM_39770 PF13404 AsnC-type helix-turn-helix domain RAM_39775 PF00296 Luciferase-like monooxygenase RAM_39780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RAM_39785 PF01980 Uncharacterised protein family UPF0066 RAM_39790 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_39790 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_39795 PF00381 PTS HPr component phosphorylation site RAM_39795 PF03610 PTS system fructose IIA component RAM_39800 PF02734 DAK2 domain RAM_39805 PF02733 Dak1 domain RAM_39820 PF00474 Sodium:solute symporter family RAM_39830 PF07866 Protein of unknown function (DUF1653) RAM_39835 PF01939 Protein of unknown function DUF91 RAM_39840 PF00293 NUDIX domain RAM_39845 PF11066 RAM_39845 RAM_39850 PF00440 Bacterial regulatory proteins, tetR family RAM_39855 PF00378 Enoyl-CoA hydratase/isomerase family RAM_39860 PF01965 DJ-1/PfpI family RAM_39860 PF12833 Helix-turn-helix domain RAM_39865 PF00857 Isochorismatase family RAM_39870 PF01642 Methylmalonyl-CoA mutase RAM_39870 PF02310 B12 binding domain RAM_39885 PF01810 RAM_39885 RAM_39890 PF01810 RAM_39890 RAM_39895 PF12697 Alpha/beta hydrolase family RAM_39900 PF05368 NmrA-like family RAM_39900 PF13460 NADH(P)-binding RAM_39905 PF12680 SnoaL-like domain RAM_39910 PF00440 Bacterial regulatory proteins, tetR family RAM_39910 PF16859 RAM_39910 RAM_39915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RAM_39920 PF01923 Cobalamin adenosyltransferase RAM_39925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RAM_39930 PF10739 RAM_39930 RAM_39935 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RAM_39940 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAM_39940 PF02874 ATP synthase alpha/beta family, beta-barrel domain RAM_39945 PF00231 ATP synthase RAM_39950 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAM_39950 PF00306 ATP synthase alpha/beta chain, C terminal domain RAM_39950 PF02874 ATP synthase alpha/beta family, beta-barrel domain RAM_39955 PF00213 ATP synthase delta (OSCP) subunit RAM_39960 PF00430 ATP synthase B/B' CF(0) RAM_39965 PF00137 ATP synthase subunit C RAM_39970 PF00119 ATP synthase A chain RAM_39980 PF00953 Glycosyl transferase family 4 RAM_39985 PF01300 Telomere recombination RAM_39995 PF05175 Methyltransferase small domain RAM_40000 PF00535 Glycosyl transferase family 2 RAM_40005 PF04138 RAM_40005 RAM_40010 PF04188 RAM_40010 RAM_40015 PF00472 RF-1 domain RAM_40015 PF03462 PCRF domain RAM_40020 PF01197 Ribosomal protein L31 RAM_40025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RAM_40025 PF07497 Rho termination factor, RNA-binding domain RAM_40025 PF07498 Rho termination factor, N-terminal domain RAM_40030 PF00288 GHMP kinases N terminal domain RAM_40030 PF08544 GHMP kinases C terminal RAM_40035 PF00291 Pyridoxal-phosphate dependent enzyme RAM_40040 PF00742 Homoserine dehydrogenase RAM_40040 PF01842 ACT domain RAM_40040 PF03447 Homoserine dehydrogenase, NAD binding domain RAM_40045 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_40045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_40050 PF00750 tRNA synthetases class I (R) RAM_40050 PF03485 Arginyl tRNA synthetase N terminal domain RAM_40050 PF05746 DALR anticodon binding domain RAM_40055 PF11303 RAM_40055 RAM_40060 PF03713 Domain of unknown function (DUF305) RAM_40065 PF12721 RAM_40065 RAM_40070 PF01545 Cation efflux family RAM_40075 PF12802 MarR family RAM_40080 PF00106 short chain dehydrogenase RAM_40085 PF06441 Epoxide hydrolase N terminus RAM_40090 PF00589 Phage integrase family RAM_40095 PF08240 Alcohol dehydrogenase GroES-like domain RAM_40095 PF13602 Zinc-binding dehydrogenase RAM_40105 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_40110 PF12833 Helix-turn-helix domain RAM_40120 PF13474 SnoaL-like domain RAM_40135 PF01527 Transposase RAM_40140 PF00665 Integrase core domain RAM_40140 PF13276 RAM_40140 RAM_40155 PF05787 Bacterial protein of unknown function (DUF839) RAM_40165 PF00294 pfkB family carbohydrate kinase RAM_40170 PF01975 Survival protein SurE RAM_40185 PF00486 Transcriptional regulatory protein, C terminal RAM_40185 PF00931 NB-ARC domain RAM_40185 PF03704 Bacterial transcriptional activator domain RAM_40185 PF13424 Tetratricopeptide repeat RAM_40190 PF00067 Cytochrome P450 RAM_40200 PF00295 Glycosyl hydrolases family 28 RAM_40200 PF12708 Pectate lyase superfamily protein RAM_40205 PF00652 Ricin-type beta-trefoil lectin domain RAM_40205 PF07995 Glucose / Sorbosone dehydrogenase RAM_40210 PF00652 Ricin-type beta-trefoil lectin domain RAM_40210 PF16499 RAM_40210 RAM_40210 PF17450 RAM_40210 RAM_40215 PF00652 Ricin-type beta-trefoil lectin domain RAM_40215 PF03664 Glycosyl hydrolase family 62 RAM_40220 PF00041 Fibronectin type III domain RAM_40220 PF00553 Cellulose binding domain RAM_40220 PF12891 Glycoside hydrolase family 44 RAM_40225 PF00480 ROK family RAM_40225 PF13412 Winged helix-turn-helix DNA-binding RAM_40230 PF00703 Glycosyl hydrolases family 2 RAM_40230 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RAM_40230 PF02837 Glycosyl hydrolases family 2, sugar binding domain RAM_40230 PF16355 RAM_40230 RAM_40235 PF00652 Ricin-type beta-trefoil lectin domain RAM_40240 PF00652 Ricin-type beta-trefoil lectin domain RAM_40245 PF02018 Carbohydrate binding domain RAM_40245 PF13229 Right handed beta helix region RAM_40260 PF00553 Cellulose binding domain RAM_40260 PF12891 Glycoside hydrolase family 44 RAM_40265 PF13411 MerR HTH family regulatory protein RAM_40275 PF13581 Histidine kinase-like ATPase domain RAM_40285 PF02325 RAM_40285 RAM_40290 PF00440 Bacterial regulatory proteins, tetR family RAM_40290 PF13977 Bacterial transcriptional repressor RAM_40295 PF01494 FAD binding domain RAM_40300 PF02470 RAM_40300 RAM_40305 PF01609 Transposase DDE domain RAM_40305 PF13808 RAM_40305 RAM_40315 PF08241 Methyltransferase domain RAM_40320 PF09754 PAC2 family RAM_40325 PF03703 RAM_40325 RAM_40330 PF03703 RAM_40330 RAM_40335 PF06439 Domain of Unknown Function (DUF1080) RAM_40340 PF01614 Bacterial transcriptional regulator RAM_40340 PF09339 IclR helix-turn-helix domain RAM_40345 PF00583 Acetyltransferase (GNAT) family RAM_40360 PF00202 Aminotransferase class-III RAM_40365 PF02515 CoA-transferase family III RAM_40370 PF12840 Helix-turn-helix domain RAM_40380 PF00392 Bacterial regulatory proteins, gntR family RAM_40380 PF07729 FCD domain RAM_40385 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_40390 PF02538 RAM_40390 RAM_40395 PF01968 Hydantoinase/oxoprolinase RAM_40395 PF05378 RAM_40395 RAM_40400 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_40400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_40400 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_40405 PF01266 FAD dependent oxidoreductase RAM_40410 PF03007 RAM_40410 RAM_40410 PF06974 RAM_40410 RAM_40415 PF03070 TENA/THI-4/PQQC family RAM_40420 PF05402 Coenzyme PQQ synthesis protein D (PqqD) RAM_40425 PF04055 Radical SAM superfamily RAM_40425 PF13186 Iron-sulfur cluster-binding domain RAM_40430 PF12706 Beta-lactamase superfamily domain RAM_40435 PF07690 Major Facilitator Superfamily RAM_40445 PF01425 Amidase RAM_40450 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_40460 PF01177 Asp/Glu/Hydantoin racemase RAM_40465 PF00392 Bacterial regulatory proteins, gntR family RAM_40465 PF07729 FCD domain RAM_40470 PF14081 RAM_40470 RAM_40475 PF00180 Isocitrate/isopropylmalate dehydrogenase RAM_40480 PF00171 Aldehyde dehydrogenase family RAM_40485 PF00202 Aminotransferase class-III RAM_40490 PF12903 Protein of unknown function (DUF3830) RAM_40495 PF00248 Aldo/keto reductase family RAM_40505 PF03259 Roadblock/LC7 domain RAM_40510 PF01565 FAD binding domain RAM_40510 PF02913 FAD linked oxidases, C-terminal domain RAM_40515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_40515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_40520 PF04672 S-adenosyl methyltransferase RAM_40525 PF04672 S-adenosyl methyltransferase RAM_40530 PF07690 Major Facilitator Superfamily RAM_40535 PF12587 RAM_40535 RAM_40540 PF07730 Histidine kinase RAM_40545 PF00072 Response regulator receiver domain RAM_40545 PF00196 Bacterial regulatory proteins, luxR family RAM_40550 PF03176 MMPL family RAM_40555 PF07971 Glycosyl hydrolase family 92 RAM_40560 PF00378 Enoyl-CoA hydratase/isomerase family RAM_40560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_40560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_40565 PF00108 Thiolase, N-terminal domain RAM_40565 PF02803 Thiolase, C-terminal domain RAM_40570 PF00440 Bacterial regulatory proteins, tetR family RAM_40585 PF00931 NB-ARC domain RAM_40585 PF13374 Tetratricopeptide repeat RAM_40585 PF13424 Tetratricopeptide repeat RAM_40590 PF07728 AAA domain (dynein-related subfamily) RAM_40605 PF06772 RAM_40605 RAM_40610 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_40610 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_40610 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_40615 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_40615 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_40640 PF00665 Integrase core domain RAM_40640 PF13276 RAM_40640 RAM_40645 PF01527 Transposase RAM_40665 PF00293 NUDIX domain RAM_40670 PF03235 RAM_40670 RAM_40675 PF06850 RAM_40675 RAM_40680 PF00106 short chain dehydrogenase RAM_40685 PF00583 Acetyltransferase (GNAT) family RAM_40690 PF00557 Metallopeptidase family M24 RAM_40695 PF02575 YbaB/EbfC DNA-binding family RAM_40710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_40710 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_40710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_40715 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain RAM_40715 PF00364 Biotin-requiring enzyme RAM_40715 PF02785 Biotin carboxylase C-terminal domain RAM_40715 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RAM_40720 PF01039 Carboxyl transferase domain RAM_40725 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_40735 PF00440 Bacterial regulatory proteins, tetR family RAM_40745 PF10067 RAM_40745 RAM_40750 PF00561 alpha/beta hydrolase fold RAM_40755 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_40760 PF01494 FAD binding domain RAM_40765 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_40770 PF03551 Transcriptional regulator PadR-like family RAM_40775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_40785 PF13649 Methyltransferase domain RAM_40790 PF13556 PucR C-terminal helix-turn-helix domain RAM_40795 PF05572 Pregnancy-associated plasma protein-A RAM_40800 PF13602 Zinc-binding dehydrogenase RAM_40805 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RAM_40805 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RAM_40815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_40825 PF00486 Transcriptional regulatory protein, C terminal RAM_40830 PF00005 ABC transporter RAM_40835 PF12679 RAM_40835 RAM_40840 PF00005 ABC transporter RAM_40840 PF00664 ABC transporter transmembrane region RAM_40845 PF14124 RAM_40845 RAM_40855 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAM_40855 PF00676 Dehydrogenase E1 component RAM_40855 PF02779 Transketolase, pyrimidine binding domain RAM_40855 PF16078 RAM_40855 RAM_40855 PF16870 RAM_40855 RAM_40860 PF00534 Glycosyl transferases group 1 RAM_40860 PF00561 alpha/beta hydrolase fold RAM_40865 PF02709 N-terminal domain of galactosyltransferase RAM_40875 PF13527 Acetyltransferase (GNAT) domain RAM_40880 PF00296 Luciferase-like monooxygenase RAM_40885 PF01810 RAM_40885 RAM_40890 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RAM_40895 PF00528 Binding-protein-dependent transport system inner membrane component RAM_40900 PF00528 Binding-protein-dependent transport system inner membrane component RAM_40905 PF00005 ABC transporter RAM_40910 PF01861 Protein of unknown function DUF43 RAM_40915 PF00390 Malic enzyme, N-terminal domain RAM_40915 PF03949 Malic enzyme, NAD binding domain RAM_40920 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RAM_40925 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_40930 PF01047 MarR family RAM_40940 PF14539 Domain of unknown function (DUF4442) RAM_40945 PF00300 Histidine phosphatase superfamily (branch 1) RAM_40950 PF00583 Acetyltransferase (GNAT) family RAM_40960 PF00781 Diacylglycerol kinase catalytic domain RAM_40965 PF02467 RAM_40965 RAM_40970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_40970 PF07568 RAM_40970 RAM_40970 PF08448 PAS fold RAM_40970 PF12282 Signal transduction histidine kinase RAM_40975 PF13490 Putative zinc-finger RAM_40980 PF04542 Sigma-70 region 2 RAM_40980 PF08281 Sigma-70, region 4 RAM_40985 PF04073 Aminoacyl-tRNA editing domain RAM_40995 PF02586 Uncharacterised ACR, COG2135 RAM_41000 PF03193 Protein of unknown function, DUF258 RAM_41020 PF03007 RAM_41020 RAM_41020 PF06974 RAM_41020 RAM_41025 PF00588 SpoU rRNA Methylase family RAM_41025 PF08032 RNA 2'-O ribose methyltransferase substrate binding RAM_41030 PF13419 Haloacid dehalogenase-like hydrolase RAM_41040 PF00067 Cytochrome P450 RAM_41045 PF01043 SecA preprotein cross-linking domain RAM_41045 PF07516 SecA Wing and Scaffold domain RAM_41045 PF07517 SecA DEAD-like domain RAM_41050 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RAM_41050 PF16321 RAM_41050 RAM_41060 PF10647 RAM_41060 RAM_41065 PF00512 His Kinase A (phospho-acceptor) domain RAM_41065 PF00672 HAMP domain RAM_41065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_41070 PF00072 Response regulator receiver domain RAM_41070 PF00486 Transcriptional regulatory protein, C terminal RAM_41075 PF00355 Rieske [2Fe-2S] domain RAM_41080 PF01614 Bacterial transcriptional regulator RAM_41080 PF09339 IclR helix-turn-helix domain RAM_41085 PF08279 HTH domain RAM_41085 PF13280 RAM_41085 RAM_41095 PF01266 FAD dependent oxidoreductase RAM_41095 PF01571 Aminomethyltransferase folate-binding domain RAM_41095 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_41100 PF02223 Thymidylate kinase RAM_41110 PF12385 RAM_41110 RAM_41120 PF11208 RAM_41120 RAM_41125 PF01850 PIN domain RAM_41130 PF05534 RAM_41130 RAM_41135 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RAM_41135 PF05221 S-adenosyl-L-homocysteine hydrolase RAM_41150 PF13520 Amino acid permease RAM_41155 PF01545 Cation efflux family RAM_41160 PF00486 Transcriptional regulatory protein, C terminal RAM_41160 PF00931 NB-ARC domain RAM_41160 PF03704 Bacterial transcriptional activator domain RAM_41165 PF01238 Phosphomannose isomerase type I RAM_41175 PF03966 Trm112p-like protein RAM_41180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RAM_41180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RAM_41180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RAM_41180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RAM_41185 PF12005 RAM_41185 RAM_41190 PF06262 Possibl zinc metallo-peptidase RAM_41195 PF00535 Glycosyl transferase family 2 RAM_41200 PF02467 RAM_41200 RAM_41220 PF02585 GlcNAc-PI de-N-acetylase RAM_41225 PF00005 ABC transporter RAM_41225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_41230 PF00528 Binding-protein-dependent transport system inner membrane component RAM_41235 PF00528 Binding-protein-dependent transport system inner membrane component RAM_41235 PF12911 RAM_41235 RAM_41240 PF00528 Binding-protein-dependent transport system inner membrane component RAM_41245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_41250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_41255 PF00009 Elongation factor Tu GTP binding domain RAM_41255 PF00679 Elongation factor G C-terminus RAM_41255 PF03144 Elongation factor Tu domain 2 RAM_41265 PF03795 YCII-related domain RAM_41270 PF00579 tRNA synthetases class I (W and Y) RAM_41275 PF00293 NUDIX domain RAM_41280 PF00512 His Kinase A (phospho-acceptor) domain RAM_41280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_41285 PF00072 Response regulator receiver domain RAM_41285 PF00486 Transcriptional regulatory protein, C terminal RAM_41290 PF03888 MucB/RseB family RAM_41295 PF00005 ABC transporter RAM_41300 PF12679 RAM_41300 RAM_41305 PF00005 ABC transporter RAM_41305 PF08402 TOBE domain RAM_41310 PF00528 Binding-protein-dependent transport system inner membrane component RAM_41315 PF13343 Bacterial extracellular solute-binding protein RAM_41320 PF01329 Pterin 4 alpha carbinolamine dehydratase RAM_41350 PF01926 50S ribosome-binding GTPase RAM_41350 PF06071 Protein of unknown function (DUF933) RAM_41355 PF02805 Metal binding domain of Ada RAM_41355 PF06029 AlkA N-terminal domain RAM_41355 PF12833 Helix-turn-helix domain RAM_41360 PF08410 RAM_41360 RAM_41365 PF13476 AAA domain RAM_41365 PF13558 Putative exonuclease SbcCD, C subunit RAM_41370 PF00149 Calcineurin-like phosphoesterase RAM_41375 PF02646 RAM_41375 RAM_41385 PF02401 LytB protein RAM_41395 PF02601 RAM_41395 RAM_41395 PF13742 RAM_41395 RAM_41405 PF02609 Exonuclease VII small subunit RAM_41410 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RAM_41415 PF00089 Trypsin RAM_41420 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_41425 PF00206 Lyase RAM_41425 PF10415 Fumarase C C-terminus RAM_41430 PF13560 Helix-turn-helix domain RAM_41435 PF01068 ATP dependent DNA ligase domain RAM_41435 PF04675 DNA ligase N terminus RAM_41435 PF04679 ATP dependent DNA ligase C terminal region RAM_41450 PF00753 Metallo-beta-lactamase superfamily RAM_41465 PF03745 Domain of unknown function (DUF309) RAM_41470 PF00478 IMP dehydrogenase / GMP reductase domain RAM_41470 PF00571 CBS domain RAM_41475 PF01979 Amidohydrolase family RAM_41475 PF07676 WD40-like Beta Propeller Repeat RAM_41480 PF02562 PhoH-like protein RAM_41480 PF13638 PIN domain RAM_41485 PF01255 Putative undecaprenyl diphosphate synthase RAM_41490 PF03006 RAM_41490 RAM_41500 PF02627 Carboxymuconolactone decarboxylase family RAM_41505 PF05239 PRC-barrel domain RAM_41505 PF09557 RAM_41505 RAM_41510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_41510 PF01756 Acyl-CoA oxidase RAM_41510 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_41510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_41515 PF00295 Glycosyl hydrolases family 28 RAM_41515 PF10518 TAT (twin-arginine translocation) pathway signal sequence RAM_41515 PF12708 Pectate lyase superfamily protein RAM_41535 PF03190 Protein of unknown function, DUF255 RAM_41550 PF12623 RNA repair, ligase-Pnkp-associating, region of Hen1 RAM_41550 PF13489 Methyltransferase domain RAM_41555 PF00149 Calcineurin-like phosphoesterase RAM_41555 PF13671 AAA domain RAM_41555 PF16536 RAM_41555 RAM_41555 PF16542 RAM_41555 RAM_41565 PF02585 GlcNAc-PI de-N-acetylase RAM_41570 PF14155 RAM_41570 RAM_41575 PF01272 Transcription elongation factor, GreA/GreB, C-term RAM_41575 PF03449 Transcription elongation factor, N-terminal RAM_41585 PF01037 AsnC family RAM_41585 PF13404 AsnC-type helix-turn-helix domain RAM_41590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_41595 PF02575 YbaB/EbfC DNA-binding family RAM_41600 PF10824 Protein of unknown function (DUF2580) RAM_41620 PF00291 Pyridoxal-phosphate dependent enzyme RAM_41630 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_41635 PF01053 Cys/Met metabolism PLP-dependent enzyme RAM_41650 PF00291 Pyridoxal-phosphate dependent enzyme RAM_41650 PF00571 CBS domain RAM_41655 PF00108 Thiolase, N-terminal domain RAM_41655 PF02803 Thiolase, C-terminal domain RAM_41665 PF12811 RAM_41665 RAM_41675 PF04203 Sortase family RAM_41680 PF00106 short chain dehydrogenase RAM_41680 PF07993 Male sterility protein RAM_41690 PF01425 Amidase RAM_41695 PF00196 Bacterial regulatory proteins, luxR family RAM_41705 PF06013 Proteins of 100 residues with WXG RAM_41710 PF00486 Transcriptional regulatory protein, C terminal RAM_41710 PF03704 Bacterial transcriptional activator domain RAM_41710 PF13191 AAA ATPase domain RAM_41715 PF00196 Bacterial regulatory proteins, luxR family RAM_41715 PF00486 Transcriptional regulatory protein, C terminal RAM_41715 PF03704 Bacterial transcriptional activator domain RAM_41715 PF13191 AAA ATPase domain RAM_41720 PF00232 Glycosyl hydrolase family 1 RAM_41725 PF00528 Binding-protein-dependent transport system inner membrane component RAM_41730 PF00528 Binding-protein-dependent transport system inner membrane component RAM_41735 PF13416 Bacterial extracellular solute-binding protein RAM_41740 PF00196 Bacterial regulatory proteins, luxR family RAM_41745 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_41750 PF00248 Aldo/keto reductase family RAM_41760 PF07690 Major Facilitator Superfamily RAM_41765 PF01037 AsnC family RAM_41765 PF13404 AsnC-type helix-turn-helix domain RAM_41770 PF13490 Putative zinc-finger RAM_41780 PF00182 Chitinase class I RAM_41785 PF00975 Thioesterase domain RAM_41790 PF00775 Dioxygenase RAM_41795 PF02311 AraC-like ligand binding domain RAM_41795 PF12833 Helix-turn-helix domain RAM_41805 PF13354 Beta-lactamase enzyme family RAM_41810 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_41810 PF00553 Cellulose binding domain RAM_41815 PF00009 Elongation factor Tu GTP binding domain RAM_41815 PF00679 Elongation factor G C-terminus RAM_41815 PF03764 Elongation factor G, domain IV RAM_41815 PF14492 Elongation Factor G, domain II RAM_41820 PF01636 Phosphotransferase enzyme family RAM_41825 PF00512 His Kinase A (phospho-acceptor) domain RAM_41825 PF00672 HAMP domain RAM_41825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_41830 PF00113 Enolase, C-terminal TIM barrel domain RAM_41830 PF03952 Enolase, N-terminal domain RAM_41835 PF00717 Peptidase S24-like RAM_41835 PF10502 Signal peptidase, peptidase S26 RAM_41840 PF00005 ABC transporter RAM_41850 PF07291 RAM_41850 RAM_41860 PF00931 NB-ARC domain RAM_41860 PF13424 Tetratricopeptide repeat RAM_41865 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_41870 PF00486 Transcriptional regulatory protein, C terminal RAM_41870 PF03704 Bacterial transcriptional activator domain RAM_41875 PF01494 FAD binding domain RAM_41885 PF00196 Bacterial regulatory proteins, luxR family RAM_41885 PF13191 AAA ATPase domain RAM_41895 PF00588 SpoU rRNA Methylase family RAM_41915 PF00999 Sodium/hydrogen exchanger family RAM_41925 PF06564 YhjQ protein RAM_41930 PF04055 Radical SAM superfamily RAM_41930 PF13353 4Fe-4S single cluster domain RAM_41940 PF08281 Sigma-70, region 4 RAM_41945 PF00069 Protein kinase domain RAM_41960 PF02452 PemK-like protein RAM_41970 PF00561 alpha/beta hydrolase fold RAM_41970 PF06779 RAM_41970 RAM_41975 PF00440 Bacterial regulatory proteins, tetR family RAM_41980 PF04542 Sigma-70 region 2 RAM_41980 PF08281 Sigma-70, region 4 RAM_41990 PF05572 Pregnancy-associated plasma protein-A RAM_42000 PF12697 Alpha/beta hydrolase family RAM_42005 PF03995 Peptidase inhibitor family I36 RAM_42015 PF07883 Cupin domain RAM_42025 PF01048 Phosphorylase superfamily RAM_42030 PF00293 NUDIX domain RAM_42040 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_42045 PF03167 Uracil DNA glycosylase superfamily RAM_42055 PF00450 Serine carboxypeptidase RAM_42060 PF00082 Subtilase family RAM_42065 PF00005 ABC transporter RAM_42065 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_42070 PF00005 ABC transporter RAM_42070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_42075 PF00528 Binding-protein-dependent transport system inner membrane component RAM_42075 PF12911 RAM_42075 RAM_42080 PF00528 Binding-protein-dependent transport system inner membrane component RAM_42085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_42090 PF02541 Ppx/GppA phosphatase family RAM_42095 PF13406 Transglycosylase SLT domain RAM_42100 PF04417 RAM_42100 RAM_42105 PF04977 Septum formation initiator RAM_42110 PF00113 Enolase, C-terminal TIM barrel domain RAM_42110 PF03952 Enolase, N-terminal domain RAM_42120 PF13432 Tetratricopeptide repeat RAM_42135 PF03239 RAM_42135 RAM_42140 PF09375 Imelysin RAM_42140 PF13473 Cupredoxin-like domain RAM_42145 PF04261 Dyp-type peroxidase family RAM_42150 PF00440 Bacterial regulatory proteins, tetR family RAM_42155 PF14606 GDSL-like Lipase/Acylhydrolase family RAM_42160 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_42175 PF00005 ABC transporter RAM_42180 PF13490 Putative zinc-finger RAM_42185 PF04542 Sigma-70 region 2 RAM_42185 PF08281 Sigma-70, region 4 RAM_42190 PF03819 MazG nucleotide pyrophosphohydrolase domain RAM_42210 PF00270 DEAD/DEAH box helicase RAM_42210 PF00271 Helicase conserved C-terminal domain RAM_42210 PF02559 CarD-like/TRCF domain RAM_42210 PF03461 TRCF domain RAM_42215 PF00296 Luciferase-like monooxygenase RAM_42220 PF13560 Helix-turn-helix domain RAM_42225 PF09335 RAM_42225 RAM_42230 PF13649 Methyltransferase domain RAM_42235 PF07730 Histidine kinase RAM_42240 PF00072 Response regulator receiver domain RAM_42240 PF00196 Bacterial regulatory proteins, luxR family RAM_42245 PF07995 Glucose / Sorbosone dehydrogenase RAM_42250 PF13354 Beta-lactamase enzyme family RAM_42255 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_42265 PF00857 Isochorismatase family RAM_42270 PF00293 NUDIX domain RAM_42275 PF00440 Bacterial regulatory proteins, tetR family RAM_42280 PF00487 RAM_42280 RAM_42285 PF00990 GGDEF domain RAM_42290 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_42290 PF12804 MobA-like NTP transferase domain RAM_42295 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RAM_42295 PF14572 Phosphoribosyl synthetase-associated domain RAM_42300 PF00296 Luciferase-like monooxygenase RAM_42305 PF13460 NADH(P)-binding RAM_42315 PF01386 Ribosomal L25p family RAM_42315 PF14693 Ribosomal protein TL5, C-terminal domain RAM_42320 PF01195 Peptidyl-tRNA hydrolase RAM_42335 PF00501 AMP-binding enzyme RAM_42340 PF00005 ABC transporter RAM_42340 PF12848 ABC transporter RAM_42340 PF16326 RAM_42340 RAM_42345 PF04266 ASCH domain RAM_42350 PF00288 GHMP kinases N terminal domain RAM_42350 PF08544 GHMP kinases C terminal RAM_42355 PF00005 ABC transporter RAM_42355 PF09383 NIL domain RAM_42360 PF00398 Ribosomal RNA adenine dimethylase RAM_42365 PF03990 RAM_42365 RAM_42365 PF06737 Transglycosylase-like domain RAM_42365 PF07501 G5 domain RAM_42370 PF01026 TatD related DNase RAM_42375 PF09334 tRNA synthetases class I (M) RAM_42380 PF03551 Transcriptional regulator PadR-like family RAM_42385 PF00005 ABC transporter RAM_42385 PF13732 RAM_42385 RAM_42390 PF01061 RAM_42390 RAM_42395 PF01183 Glycosyl hydrolases family 25 RAM_42400 PF00425 chorismate binding enzyme RAM_42405 PF00107 Zinc-binding dehydrogenase RAM_42405 PF08240 Alcohol dehydrogenase GroES-like domain RAM_42415 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RAM_42420 PF02366 RAM_42420 RAM_42420 PF16192 RAM_42420 RAM_42425 PF02311 AraC-like ligand binding domain RAM_42425 PF12833 Helix-turn-helix domain RAM_42430 PF08241 Methyltransferase domain RAM_42435 PF00069 Protein kinase domain RAM_42440 PF00501 AMP-binding enzyme RAM_42440 PF13193 AMP-binding enzyme C-terminal domain RAM_42440 PF16177 RAM_42440 RAM_42445 PF00728 Glycosyl hydrolase family 20, catalytic domain RAM_42445 PF02838 Glycosyl hydrolase family 20, domain 2 RAM_42450 PF00440 Bacterial regulatory proteins, tetR family RAM_42455 PF03473 MOSC domain RAM_42460 PF01546 Peptidase family M20/M25/M40 RAM_42460 PF07687 Peptidase dimerisation domain RAM_42465 PF03358 NADPH-dependent FMN reductase RAM_42465 PF13474 SnoaL-like domain RAM_42470 PF04542 Sigma-70 region 2 RAM_42470 PF08281 Sigma-70, region 4 RAM_42475 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_42480 PF00440 Bacterial regulatory proteins, tetR family RAM_42480 PF13305 WHG domain RAM_42485 PF10979 RAM_42485 RAM_42495 PF12840 Helix-turn-helix domain RAM_42505 PF03176 MMPL family RAM_42510 PF00892 EamA-like transporter family RAM_42515 PF00563 EAL domain RAM_42515 PF00989 PAS fold RAM_42515 PF00990 GGDEF domain RAM_42520 PF00067 Cytochrome P450 RAM_42525 PF13614 AAA domain RAM_42540 PF13460 NADH(P)-binding RAM_42545 PF02557 D-alanyl-D-alanine carboxypeptidase RAM_42550 PF00072 Response regulator receiver domain RAM_42550 PF00486 Transcriptional regulatory protein, C terminal RAM_42555 PF00512 His Kinase A (phospho-acceptor) domain RAM_42555 PF00672 HAMP domain RAM_42555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_42560 PF01427 D-ala-D-ala dipeptidase RAM_42565 PF01820 D-ala D-ala ligase N-terminus RAM_42565 PF07478 D-ala D-ala ligase C-terminus RAM_42570 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RAM_42570 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_42575 PF00291 Pyridoxal-phosphate dependent enzyme RAM_42580 PF01638 HxlR-like helix-turn-helix RAM_42585 PF00155 Aminotransferase class I and II RAM_42590 PF00501 AMP-binding enzyme RAM_42590 PF00550 Phosphopantetheine attachment site RAM_42590 PF00668 Condensation domain RAM_42590 PF08242 Methyltransferase domain RAM_42595 PF00550 Phosphopantetheine attachment site RAM_42600 PF00975 Thioesterase domain RAM_42605 PF01810 RAM_42605 RAM_42615 PF00069 Protein kinase domain RAM_42635 PF10592 RAM_42635 RAM_42640 PF01935 Domain of unknown function DUF87 RAM_42665 PF00270 DEAD/DEAH box helicase RAM_42665 PF00271 Helicase conserved C-terminal domain RAM_42665 PF09369 RAM_42665 RAM_42675 PF13302 Acetyltransferase (GNAT) domain RAM_42680 PF00994 Probable molybdopterin binding domain RAM_42680 PF03453 MoeA N-terminal region (domain I and II) RAM_42680 PF03454 MoeA C-terminal region (domain IV) RAM_42685 PF00483 Nucleotidyl transferase RAM_42690 PF01812 5-formyltetrahydrofolate cyclo-ligase family RAM_42695 PF09723 RAM_42695 RAM_42700 PF08666 SAF domain RAM_42705 PF01741 Large-conductance mechanosensitive channel, MscL RAM_42715 PF00994 Probable molybdopterin binding domain RAM_42720 PF01370 NAD dependent epimerase/dehydratase family RAM_42725 PF01609 Transposase DDE domain RAM_42735 PF00512 His Kinase A (phospho-acceptor) domain RAM_42735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_42740 PF00072 Response regulator receiver domain RAM_42740 PF00486 Transcriptional regulatory protein, C terminal RAM_42750 PF00535 Glycosyl transferase family 2 RAM_42755 PF09837 Uncharacterized protein conserved in bacteria (DUF2064) RAM_42765 PF00174 Oxidoreductase molybdopterin binding domain RAM_42775 PF13180 PDZ domain RAM_42775 PF13365 Trypsin-like peptidase domain RAM_42780 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RAM_42780 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RAM_42785 PF00455 RAM_42785 RAM_42785 PF08220 DeoR-like helix-turn-helix domain RAM_42790 PF00512 His Kinase A (phospho-acceptor) domain RAM_42790 PF00672 HAMP domain RAM_42790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_42795 PF00072 Response regulator receiver domain RAM_42795 PF00486 Transcriptional regulatory protein, C terminal RAM_42800 PF03458 RAM_42800 RAM_42805 PF00072 Response regulator receiver domain RAM_42805 PF00196 Bacterial regulatory proteins, luxR family RAM_42810 PF05175 Methyltransferase small domain RAM_42820 PF07690 Major Facilitator Superfamily RAM_42825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_42825 PF03466 LysR substrate binding domain RAM_42830 PF00248 Aldo/keto reductase family RAM_42835 PF00155 Aminotransferase class I and II RAM_42835 PF00392 Bacterial regulatory proteins, gntR family RAM_42840 PF07971 Glycosyl hydrolase family 92 RAM_42845 PF00534 Glycosyl transferases group 1 RAM_42850 PF00069 Protein kinase domain RAM_42855 PF00459 Inositol monophosphatase family RAM_42860 PF02633 Creatinine amidohydrolase RAM_42865 PF00925 GTP cyclohydrolase II RAM_42870 PF03706 RAM_42870 RAM_42880 PF00534 Glycosyl transferases group 1 RAM_42885 PF01242 6-pyruvoyl tetrahydropterin synthase RAM_42890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RAM_42895 PF01066 CDP-alcohol phosphatidyltransferase RAM_42905 PF09995 RAM_42905 RAM_42910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_42910 PF03466 LysR substrate binding domain RAM_42915 PF01565 FAD binding domain RAM_42920 PF01757 RAM_42920 RAM_42925 PF04075 Domain of unknown function (DUF385) RAM_42930 PF12802 MarR family RAM_42935 PF13396 RAM_42935 RAM_42945 PF13302 Acetyltransferase (GNAT) domain RAM_42950 PF07848 PaaX-like protein RAM_42950 PF08223 PaaX-like protein C-terminal domain RAM_42955 PF01042 Endoribonuclease L-PSP RAM_42960 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RAM_42960 PF01494 FAD binding domain RAM_42965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_42965 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_42965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_42970 PF10067 RAM_42970 RAM_42975 PF00232 Glycosyl hydrolase family 1 RAM_42980 PF00005 ABC transporter RAM_42980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_42985 PF00528 Binding-protein-dependent transport system inner membrane component RAM_42985 PF12911 RAM_42985 RAM_42990 PF00528 Binding-protein-dependent transport system inner membrane component RAM_42995 PF00005 ABC transporter RAM_42995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_43000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_43005 PF00480 ROK family RAM_43010 PF00480 ROK family RAM_43015 PF00652 Ricin-type beta-trefoil lectin domain RAM_43015 PF00722 Glycosyl hydrolases family 16 RAM_43020 PF00652 Ricin-type beta-trefoil lectin domain RAM_43020 PF07335 RAM_43020 RAM_43025 PF00652 Ricin-type beta-trefoil lectin domain RAM_43025 PF02055 O-Glycosyl hydrolase family 30 RAM_43025 PF17189 RAM_43025 RAM_43030 PF00652 Ricin-type beta-trefoil lectin domain RAM_43035 PF00392 Bacterial regulatory proteins, gntR family RAM_43035 PF07729 FCD domain RAM_43040 PF07690 Major Facilitator Superfamily RAM_43045 PF07286 Protein of unknown function (DUF1445) RAM_43050 PF03746 LamB/YcsF family RAM_43055 PF02682 Allophanate hydrolase subunit 1 RAM_43060 PF02626 Allophanate hydrolase subunit 2 RAM_43075 PF12840 Helix-turn-helix domain RAM_43080 PF13532 2OG-Fe(II) oxygenase superfamily RAM_43085 PF00107 Zinc-binding dehydrogenase RAM_43085 PF08240 Alcohol dehydrogenase GroES-like domain RAM_43095 PF00296 Luciferase-like monooxygenase RAM_43100 PF01325 Iron dependent repressor, N-terminal DNA binding domain RAM_43100 PF02742 Iron dependent repressor, metal binding and dimerisation domain RAM_43100 PF04023 FeoA domain RAM_43105 PF00583 Acetyltransferase (GNAT) family RAM_43115 PF07969 Amidohydrolase family RAM_43120 PF00378 Enoyl-CoA hydratase/isomerase family RAM_43125 PF00501 AMP-binding enzyme RAM_43125 PF13193 AMP-binding enzyme C-terminal domain RAM_43130 PF00440 Bacterial regulatory proteins, tetR family RAM_43140 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_43140 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_43140 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_43145 PF01648 4'-phosphopantetheinyl transferase superfamily RAM_43150 PF00425 chorismate binding enzyme RAM_43160 PF00501 AMP-binding enzyme RAM_43160 PF13193 AMP-binding enzyme C-terminal domain RAM_43165 PF01547 Bacterial extracellular solute-binding protein RAM_43170 PF00528 Binding-protein-dependent transport system inner membrane component RAM_43175 PF00528 Binding-protein-dependent transport system inner membrane component RAM_43185 PF03061 Thioesterase superfamily RAM_43190 PF13529 Peptidase_C39 like family RAM_43195 PF02627 Carboxymuconolactone decarboxylase family RAM_43200 PF04542 Sigma-70 region 2 RAM_43200 PF08281 Sigma-70, region 4 RAM_43205 PF00107 Zinc-binding dehydrogenase RAM_43205 PF08240 Alcohol dehydrogenase GroES-like domain RAM_43215 PF01565 FAD binding domain RAM_43215 PF02913 FAD linked oxidases, C-terminal domain RAM_43220 PF00440 Bacterial regulatory proteins, tetR family RAM_43225 PF01266 FAD dependent oxidoreductase RAM_43225 PF16901 RAM_43225 RAM_43230 PF01381 Helix-turn-helix RAM_43240 PF00005 ABC transporter RAM_43240 PF13732 RAM_43240 RAM_43245 PF12698 ABC-2 family transporter protein RAM_43250 PF13673 Acetyltransferase (GNAT) domain RAM_43255 PF00875 DNA photolyase RAM_43255 PF03441 FAD binding domain of DNA photolyase RAM_43260 PF00285 Citrate synthase RAM_43265 PF00294 pfkB family carbohydrate kinase RAM_43270 PF00440 Bacterial regulatory proteins, tetR family RAM_43275 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_43275 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_43275 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RAM_43280 PF05685 Putative restriction endonuclease RAM_43285 PF05685 Putative restriction endonuclease RAM_43290 PF01979 Amidohydrolase family RAM_43295 PF13673 Acetyltransferase (GNAT) domain RAM_43300 PF01263 Aldose 1-epimerase RAM_43305 PF09286 Pro-kumamolisin, activation domain RAM_43310 PF00440 Bacterial regulatory proteins, tetR family RAM_43315 PF00753 Metallo-beta-lactamase superfamily RAM_43320 PF00753 Metallo-beta-lactamase superfamily RAM_43330 PF05977 Transmembrane secretion effector RAM_43335 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_43335 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RAM_43345 PF00440 Bacterial regulatory proteins, tetR family RAM_43350 PF03583 Secretory lipase RAM_43355 PF01774 UreD urease accessory protein RAM_43360 PF02492 CobW/HypB/UreG, nucleotide-binding domain RAM_43365 PF01730 UreF RAM_43370 PF00449 Urease alpha-subunit, N-terminal domain RAM_43370 PF01979 Amidohydrolase family RAM_43375 PF00699 Urease beta subunit RAM_43380 PF00547 Urease, gamma subunit RAM_43385 PF00285 Citrate synthase RAM_43390 PF00440 Bacterial regulatory proteins, tetR family RAM_43395 PF00106 short chain dehydrogenase RAM_43395 PF00561 alpha/beta hydrolase fold RAM_43400 PF00005 ABC transporter RAM_43405 PF01061 RAM_43405 RAM_43410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_43410 PF07730 Histidine kinase RAM_43415 PF00072 Response regulator receiver domain RAM_43415 PF00196 Bacterial regulatory proteins, luxR family RAM_43420 PF00144 Beta-lactamase RAM_43430 PF00266 Aminotransferase class-V RAM_43435 PF09594 RAM_43435 RAM_43440 PF01979 Amidohydrolase family RAM_43445 PF02687 RAM_43445 RAM_43445 PF12704 MacB-like periplasmic core domain RAM_43450 PF00005 ABC transporter RAM_43455 PF01471 Putative peptidoglycan binding domain RAM_43465 PF00072 Response regulator receiver domain RAM_43465 PF00486 Transcriptional regulatory protein, C terminal RAM_43470 PF00512 His Kinase A (phospho-acceptor) domain RAM_43470 PF00672 HAMP domain RAM_43470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_43475 PF11268 RAM_43475 RAM_43480 PF04237 YjbR RAM_43490 PF10801 RAM_43490 RAM_43495 PF00588 SpoU rRNA Methylase family RAM_43500 PF04107 Glutamate-cysteine ligase family 2(GCS2) RAM_43505 PF00440 Bacterial regulatory proteins, tetR family RAM_43510 PF01126 Heme oxygenase RAM_43515 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RAM_43515 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RAM_43520 PF00797 N-acetyltransferase RAM_43525 PF05977 Transmembrane secretion effector RAM_43530 PF01047 MarR family RAM_43540 PF00860 Permease family RAM_43545 PF10745 RAM_43545 RAM_43555 PF11228 RAM_43555 RAM_43560 PF05096 Glutamine cyclotransferase RAM_43565 PF07690 Major Facilitator Superfamily RAM_43570 PF10969 RAM_43570 RAM_43575 PF00313 'Cold-shock' DNA-binding domain RAM_43585 PF12710 haloacid dehalogenase-like hydrolase RAM_43585 PF13242 HAD-hyrolase-like RAM_43590 PF00440 Bacterial regulatory proteins, tetR family RAM_43595 PF00268 Ribonucleotide reductase, small chain RAM_43600 PF00501 AMP-binding enzyme RAM_43600 PF13193 AMP-binding enzyme C-terminal domain RAM_43610 PF04542 Sigma-70 region 2 RAM_43610 PF08281 Sigma-70, region 4 RAM_43615 PF14200 Ricin-type beta-trefoil lectin domain-like RAM_43615 PF15899 RAM_43615 RAM_43620 PF00004 ATPase family associated with various cellular activities (AAA) RAM_43625 PF11211 RAM_43625 RAM_43630 PF04055 Radical SAM superfamily RAM_43630 PF13353 4Fe-4S single cluster domain RAM_43645 PF14011 EspG family RAM_43660 PF02567 Phenazine biosynthesis-like protein RAM_43665 PF03733 RAM_43665 RAM_43670 PF00149 Calcineurin-like phosphoesterase RAM_43675 PF13242 HAD-hyrolase-like RAM_43675 PF13344 Haloacid dehalogenase-like hydrolase RAM_43680 PF07732 Multicopper oxidase RAM_43685 PF00005 ABC transporter RAM_43685 PF03459 TOBE domain RAM_43690 PF00528 Binding-protein-dependent transport system inner membrane component RAM_43695 PF13531 Bacterial extracellular solute-binding protein RAM_43700 PF03459 TOBE domain RAM_43700 PF12728 Helix-turn-helix domain RAM_43705 PF01047 MarR family RAM_43710 PF04055 Radical SAM superfamily RAM_43710 PF06463 Molybdenum Cofactor Synthesis C RAM_43710 PF13353 4Fe-4S single cluster domain RAM_43715 PF02597 ThiS family RAM_43720 PF01476 LysM domain RAM_43720 PF06737 Transglycosylase-like domain RAM_43735 PF00994 Probable molybdopterin binding domain RAM_43735 PF02391 MoaE protein RAM_43740 PF01967 MoaC family RAM_43745 PF00390 Malic enzyme, N-terminal domain RAM_43745 PF03949 Malic enzyme, NAD binding domain RAM_43755 PF13625 RAM_43755 RAM_43765 PF05331 RAM_43765 RAM_43770 PF03259 Roadblock/LC7 domain RAM_43775 PF03029 Conserved hypothetical ATP binding protein RAM_43780 PF05331 RAM_43780 RAM_43785 PF03259 Roadblock/LC7 domain RAM_43790 PF00672 HAMP domain RAM_43790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_43790 PF08376 Nitrate and nitrite sensing RAM_43795 PF09084 NMT1/THI5 like RAM_43800 PF00528 Binding-protein-dependent transport system inner membrane component RAM_43805 PF00528 Binding-protein-dependent transport system inner membrane component RAM_43810 PF00005 ABC transporter RAM_43815 PF00205 Thiamine pyrophosphate enzyme, central domain RAM_43815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RAM_43815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RAM_43820 PF04149 RAM_43820 RAM_43830 PF09286 Pro-kumamolisin, activation domain RAM_43850 PF03932 CutC family RAM_43855 PF00672 HAMP domain RAM_43855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_43855 PF08376 Nitrate and nitrite sensing RAM_43860 PF13379 NMT1-like family RAM_43870 PF04851 Type III restriction enzyme, res subunit RAM_43870 PF13625 RAM_43870 RAM_43870 PF16203 RAM_43870 RAM_43880 PF14062 RAM_43880 RAM_43885 PF01904 Protein of unknown function DUF72 RAM_43890 PF13378 Enolase C-terminal domain-like RAM_43895 PF04024 RAM_43895 RAM_43905 PF00118 TCP-1/cpn60 chaperonin family RAM_43910 PF00069 Protein kinase domain RAM_43915 PF00313 'Cold-shock' DNA-binding domain RAM_43920 PF01987 Mitochondrial biogenesis AIM24 RAM_43925 PF01987 Mitochondrial biogenesis AIM24 RAM_43930 PF00994 Probable molybdopterin binding domain RAM_43930 PF03453 MoeA N-terminal region (domain I and II) RAM_43930 PF03454 MoeA C-terminal region (domain IV) RAM_43935 PF05977 Transmembrane secretion effector RAM_43940 PF12840 Helix-turn-helix domain RAM_43945 PF04226 RAM_43945 RAM_43955 PF02666 RAM_43955 RAM_43960 PF01066 CDP-alcohol phosphatidyltransferase RAM_43965 PF00004 ATPase family associated with various cellular activities (AAA) RAM_43965 PF02359 Cell division protein 48 (CDC48), N-terminal domain RAM_43970 PF13399 LytR cell envelope-related transcriptional attenuator RAM_43975 PF11662 RAM_43975 RAM_43980 PF01327 Polypeptide deformylase RAM_43985 PF00723 Glycosyl hydrolases family 15 RAM_43985 PF09137 Glucodextranase, domain N RAM_43990 PF13180 PDZ domain RAM_43990 PF13365 Trypsin-like peptidase domain RAM_43995 PF01964 ThiC family RAM_43995 PF13667 ThiC-associated domain RAM_44000 PF08543 Phosphomethylpyrimidine kinase RAM_44005 PF16670 RAM_44005 RAM_44010 PF08543 Phosphomethylpyrimidine kinase RAM_44015 PF01047 MarR family RAM_44020 PF05690 Thiazole biosynthesis protein ThiG RAM_44025 PF02597 ThiS family RAM_44030 PF01266 FAD dependent oxidoreductase RAM_44035 PF02581 Thiamine monophosphate synthase/TENI RAM_44045 PF00291 Pyridoxal-phosphate dependent enzyme RAM_44050 PF07690 Major Facilitator Superfamily RAM_44055 PF00392 Bacterial regulatory proteins, gntR family RAM_44055 PF07702 UTRA domain RAM_44060 PF01380 SIS domain RAM_44065 PF01869 BadF/BadG/BcrA/BcrD ATPase family RAM_44070 PF11361 RAM_44070 RAM_44075 PF13472 GDSL-like Lipase/Acylhydrolase family RAM_44080 PF00691 OmpA family RAM_44105 PF00486 Transcriptional regulatory protein, C terminal RAM_44105 PF00931 NB-ARC domain RAM_44105 PF03704 Bacterial transcriptional activator domain RAM_44110 PF05721 Phytanoyl-CoA dioxygenase (PhyH) RAM_44115 PF06339 RAM_44115 RAM_44120 PF00202 Aminotransferase class-III RAM_44125 PF00583 Acetyltransferase (GNAT) family RAM_44130 PF01734 Patatin-like phospholipase RAM_44130 PF11856 RAM_44130 RAM_44135 PF08240 Alcohol dehydrogenase GroES-like domain RAM_44135 PF13602 Zinc-binding dehydrogenase RAM_44140 PF01638 HxlR-like helix-turn-helix RAM_44150 PF14337 RAM_44150 RAM_44155 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_44160 PF06305 RAM_44160 RAM_44165 PF01244 Membrane dipeptidase (Peptidase family M19) RAM_44170 PF12802 MarR family RAM_44180 PF04909 Amidohydrolase RAM_44185 PF00501 AMP-binding enzyme RAM_44185 PF13193 AMP-binding enzyme C-terminal domain RAM_44195 PF00378 Enoyl-CoA hydratase/isomerase family RAM_44205 PF00583 Acetyltransferase (GNAT) family RAM_44210 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_44210 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_44210 PF07691 PA14 domain RAM_44210 PF14310 Fibronectin type III-like domain RAM_44215 PF00440 Bacterial regulatory proteins, tetR family RAM_44215 PF13977 Bacterial transcriptional repressor RAM_44220 PF01638 HxlR-like helix-turn-helix RAM_44225 PF01872 RibD C-terminal domain RAM_44230 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_44235 PF12802 MarR family RAM_44240 PF07617 RAM_44240 RAM_44245 PF00005 ABC transporter RAM_44250 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_44255 PF01557 Fumarylacetoacetate (FAA) hydrolase family RAM_44260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_44270 PF13380 CoA binding domain RAM_44275 PF01436 NHL repeat RAM_44280 PF06386 RAM_44280 RAM_44285 PF00741 RAM_44285 RAM_44290 PF05121 RAM_44290 RAM_44295 PF00741 RAM_44295 RAM_44300 PF06386 RAM_44300 RAM_44305 PF00741 RAM_44305 RAM_44310 PF05800 RAM_44310 RAM_44315 PF00072 Response regulator receiver domain RAM_44315 PF00486 Transcriptional regulatory protein, C terminal RAM_44320 PF00512 His Kinase A (phospho-acceptor) domain RAM_44320 PF00672 HAMP domain RAM_44320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_44325 PF07685 CobB/CobQ-like glutamine amidotransferase domain RAM_44330 PF08245 Mur ligase middle domain RAM_44330 PF08353 RAM_44330 RAM_44335 PF00107 Zinc-binding dehydrogenase RAM_44335 PF08240 Alcohol dehydrogenase GroES-like domain RAM_44340 PF00440 Bacterial regulatory proteins, tetR family RAM_44345 PF01614 Bacterial transcriptional regulator RAM_44345 PF09339 IclR helix-turn-helix domain RAM_44350 PF02652 RAM_44350 RAM_44355 PF13023 HD domain RAM_44360 PF04542 Sigma-70 region 2 RAM_44360 PF08281 Sigma-70, region 4 RAM_44365 PF03795 YCII-related domain RAM_44370 PF03795 YCII-related domain RAM_44380 PF09243 RAM_44380 RAM_44385 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_44390 PF00512 His Kinase A (phospho-acceptor) domain RAM_44390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_44395 PF09852 RAM_44395 RAM_44400 PF14016 RAM_44400 RAM_44405 PF12770 RAM_44405 RAM_44415 PF04542 Sigma-70 region 2 RAM_44420 PF00082 Subtilase family RAM_44425 PF03534 Salmonella virulence plasmid 65kDa B protein RAM_44430 PF04542 Sigma-70 region 2 RAM_44430 PF08281 Sigma-70, region 4 RAM_44435 PF02627 Carboxymuconolactone decarboxylase family RAM_44440 PF00754 F5/8 type C domain RAM_44440 PF01120 Alpha-L-fucosidase RAM_44440 PF10633 NPCBM-associated, NEW3 domain of alpha-galactosidase RAM_44440 PF16990 RAM_44440 RAM_44450 PF10898 RAM_44450 RAM_44460 PF13290 RAM_44460 RAM_44465 PF05139 Erythromycin esterase RAM_44470 PF00376 MerR family regulatory protein RAM_44470 PF13411 MerR HTH family regulatory protein RAM_44480 PF12697 Alpha/beta hydrolase family RAM_44485 PF06738 RAM_44485 RAM_44485 PF12821 RAM_44485 RAM_44490 PF00982 Glycosyltransferase family 20 RAM_44495 PF00723 Glycosyl hydrolases family 15 RAM_44495 PF02358 Trehalose-phosphatase RAM_44505 PF12840 Helix-turn-helix domain RAM_44510 PF12146 Putative lysophospholipase RAM_44515 PF04542 Sigma-70 region 2 RAM_44515 PF08281 Sigma-70, region 4 RAM_44525 PF13481 AAA domain RAM_44535 PF02559 CarD-like/TRCF domain RAM_44540 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RAM_44545 PF02542 YgbB family RAM_44550 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_44555 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_44560 PF13419 Haloacid dehalogenase-like hydrolase RAM_44565 PF01406 tRNA synthetases class I (C) catalytic domain RAM_44565 PF09190 DALR domain RAM_44570 PF00588 SpoU rRNA Methylase family RAM_44570 PF08032 RNA 2'-O ribose methyltransferase substrate binding RAM_44575 PF03062 RAM_44575 RAM_44580 PF00300 Histidine phosphatase superfamily (branch 1) RAM_44585 PF01841 Transglutaminase-like superfamily RAM_44605 PF00596 Class II Aldolase and Adducin N-terminal domain RAM_44615 PF04286 RAM_44615 RAM_44625 PF00950 RAM_44625 RAM_44630 PF00005 ABC transporter RAM_44635 PF01297 Periplasmic solute binding protein family RAM_44640 PF13377 Periplasmic binding protein-like domain RAM_44645 PF00484 Carbonic anhydrase RAM_44650 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_44655 PF00633 Helix-hairpin-helix motif RAM_44655 PF00730 HhH-GPD superfamily base excision DNA repair protein RAM_44655 PF10576 Iron-sulfur binding domain of endonuclease III RAM_44660 PF01471 Putative peptidoglycan binding domain RAM_44660 PF01510 N-acetylmuramoyl-L-alanine amidase RAM_44665 PF12697 Alpha/beta hydrolase family RAM_44670 PF01433 Peptidase family M1 RAM_44675 PF00004 ATPase family associated with various cellular activities (AAA) RAM_44680 PF03992 Antibiotic biosynthesis monooxygenase RAM_44685 PF02146 Sir2 family RAM_44690 PF01435 Peptidase family M48 RAM_44695 PF02534 Type IV secretory system Conjugative DNA transfer RAM_44735 PF03372 Endonuclease/Exonuclease/phosphatase family RAM_44740 PF00005 ABC transporter RAM_44740 PF13732 RAM_44740 RAM_44745 PF01061 RAM_44745 RAM_44750 PF00486 Transcriptional regulatory protein, C terminal RAM_44750 PF03704 Bacterial transcriptional activator domain RAM_44750 PF13191 AAA ATPase domain RAM_44755 PF01433 Peptidase family M1 RAM_44760 PF01470 Pyroglutamyl peptidase RAM_44770 PF00012 Hsp70 protein RAM_44775 PF13744 Helix-turn-helix domain RAM_44790 PF00004 ATPase family associated with various cellular activities (AAA) RAM_44790 PF02151 UvrB/uvrC motif RAM_44790 PF02861 Clp amino terminal domain RAM_44790 PF07724 AAA domain (Cdc48 subfamily) RAM_44790 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_44795 PF11575 RAM_44795 RAM_44800 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_44805 PF12833 Helix-turn-helix domain RAM_44810 PF11774 Lsr2 RAM_44815 PF00152 tRNA synthetases class II (D, K and N) RAM_44815 PF01336 OB-fold nucleic acid binding domain RAM_44820 PF08241 Methyltransferase domain RAM_44825 PF03309 Type III pantothenate kinase RAM_44830 PF02261 Aspartate decarboxylase RAM_44835 PF02569 Pantoate-beta-alanine ligase RAM_44840 PF10727 Rossmann-like domain RAM_44840 PF10728 Domain of unknown function (DUF2520) RAM_44845 PF13367 RAM_44845 RAM_44855 PF11377 RAM_44855 RAM_44860 PF13411 MerR HTH family regulatory protein RAM_44865 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RAM_44870 PF02152 Dihydroneopterin aldolase RAM_44875 PF00809 Pterin binding enzyme RAM_44880 PF01227 GTP cyclohydrolase I RAM_44885 PF00004 ATPase family associated with various cellular activities (AAA) RAM_44885 PF01434 Peptidase family M41 RAM_44890 PF14011 EspG family RAM_44895 PF14011 EspG family RAM_44910 PF00156 Phosphoribosyl transferase domain RAM_44915 PF01171 PP-loop family RAM_44915 PF09179 TilS substrate binding domain RAM_44920 PF10103 Uncharacterised conserved protein (DUF2342) RAM_44925 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RAM_44930 PF00719 Inorganic pyrophosphatase RAM_44935 PF07690 Major Facilitator Superfamily RAM_44940 PF00464 Serine hydroxymethyltransferase RAM_44945 PF00298 Ribosomal protein L11, RNA binding domain RAM_44945 PF03946 Ribosomal protein L11, N-terminal domain RAM_44950 PF00132 Bacterial transferase hexapeptide (six repeats) RAM_44955 PF00246 Zinc carboxypeptidase RAM_44960 PF00440 Bacterial regulatory proteins, tetR family RAM_44960 PF13977 Bacterial transcriptional repressor RAM_44965 PF01272 Transcription elongation factor, GreA/GreB, C-term RAM_44970 PF07110 EthD domain RAM_44985 PF01844 HNH endonuclease RAM_44990 PF13560 Helix-turn-helix domain RAM_44995 PF00293 NUDIX domain RAM_45020 PF01636 Phosphotransferase enzyme family RAM_45035 PF00392 Bacterial regulatory proteins, gntR family RAM_45050 PF01580 FtsK/SpoIIIE family RAM_45065 PF12307 RAM_45065 RAM_45070 PF12728 Helix-turn-helix domain RAM_45075 PF00589 Phage integrase family RAM_45075 PF14659 Phage integrase, N-terminal SAM-like domain RAM_45090 PF13177 DNA polymerase III, delta subunit RAM_45095 PF02223 Thymidylate kinase RAM_45095 PF05977 Transmembrane secretion effector RAM_45115 PF14011 EspG family RAM_45125 PF01131 DNA topoisomerase RAM_45125 PF01751 Toprim domain RAM_45125 PF13368 RAM_45125 RAM_45130 PF13365 Trypsin-like peptidase domain RAM_45145 PF03030 Inorganic H+ pyrophosphatase RAM_45150 PF00270 DEAD/DEAH box helicase RAM_45150 PF00271 Helicase conserved C-terminal domain RAM_45150 PF09369 RAM_45150 RAM_45155 PF09250 Bifunctional DNA primase/polymerase, N-terminal RAM_45165 PF14029 RAM_45165 RAM_45170 PF00482 Type II secretion system (T2SS), protein F RAM_45180 PF00437 Type II/IV secretion system protein RAM_45190 PF12710 haloacid dehalogenase-like hydrolase RAM_45195 PF00933 Glycosyl hydrolase family 3 N terminal domain RAM_45195 PF01915 Glycosyl hydrolase family 3 C-terminal domain RAM_45200 PF07075 Protein of unknown function (DUF1343) RAM_45205 PF00144 Beta-lactamase RAM_45205 PF05547 RAM_45205 RAM_45210 PF01380 SIS domain RAM_45210 PF01418 Helix-turn-helix domain, rpiR family RAM_45215 PF13580 SIS domain RAM_45220 PF03824 RAM_45220 RAM_45230 PF00156 Phosphoribosyl transferase domain RAM_45235 PF13302 Acetyltransferase (GNAT) domain RAM_45240 PF00501 AMP-binding enzyme RAM_45240 PF13193 AMP-binding enzyme C-terminal domain RAM_45240 PF16177 RAM_45240 RAM_45250 PF07883 Cupin domain RAM_45255 PF01988 RAM_45255 RAM_45260 PF00854 POT family RAM_45265 PF06965 Na+/H+ antiporter 1 RAM_45270 PF07332 RAM_45270 RAM_45275 PF00561 alpha/beta hydrolase fold RAM_45280 PF01494 FAD binding domain RAM_45285 PF00392 Bacterial regulatory proteins, gntR family RAM_45285 PF00440 Bacterial regulatory proteins, tetR family RAM_45285 PF02909 Tetracyclin repressor, C-terminal all-alpha domain RAM_45290 PF02674 RAM_45290 RAM_45290 PF13365 Trypsin-like peptidase domain RAM_45295 PF00293 NUDIX domain RAM_45300 PF08534 Redoxin RAM_45305 PF00633 Helix-hairpin-helix motif RAM_45305 PF00730 HhH-GPD superfamily base excision DNA repair protein RAM_45305 PF10576 Iron-sulfur binding domain of endonuclease III RAM_45315 PF00027 Cyclic nucleotide-binding domain RAM_45315 PF13545 Crp-like helix-turn-helix domain RAM_45330 PF07690 Major Facilitator Superfamily RAM_45335 PF00712 DNA polymerase III beta subunit, N-terminal domain RAM_45335 PF02767 DNA polymerase III beta subunit, central domain RAM_45335 PF02768 DNA polymerase III beta subunit, C-terminal domain RAM_45345 PF01037 AsnC family RAM_45350 PF13404 AsnC-type helix-turn-helix domain RAM_45355 PF13468 Glyoxalase-like domain RAM_45365 PF00135 Carboxylesterase family RAM_45370 PF00462 Glutaredoxin RAM_45375 PF00753 Metallo-beta-lactamase superfamily RAM_45395 PF14588 YjgF/chorismate_mutase-like, putative endoribonuclease RAM_45400 PF13783 RAM_45400 RAM_45410 PF02374 Anion-transporting ATPase RAM_45415 PF02374 Anion-transporting ATPase RAM_45420 PF02467 RAM_45420 RAM_45425 PF00905 Penicillin binding protein transpeptidase domain RAM_45425 PF00912 Transglycosylase RAM_45430 PF00069 Protein kinase domain RAM_45435 PF00149 Calcineurin-like phosphoesterase RAM_45440 PF08241 Methyltransferase domain RAM_45445 PF00326 Prolyl oligopeptidase family RAM_45450 PF01361 Tautomerase enzyme RAM_45455 PF13480 Acetyltransferase (GNAT) domain RAM_45465 PF13480 Acetyltransferase (GNAT) domain RAM_45475 PF00535 Glycosyl transferase family 2 RAM_45480 PF13535 ATP-grasp domain RAM_45490 PF02543 Carbamoyltransferase RAM_45490 PF16861 RAM_45490 RAM_45500 PF11716 Mycothiol maleylpyruvate isomerase N-terminal domain RAM_45505 PF00282 Pyridoxal-dependent decarboxylase conserved domain RAM_45510 PF00210 Ferritin-like domain RAM_45515 PF02566 OsmC-like protein RAM_45520 PF03358 NADPH-dependent FMN reductase RAM_45525 PF07859 alpha/beta hydrolase fold RAM_45535 PF00440 Bacterial regulatory proteins, tetR family RAM_45540 PF07690 Major Facilitator Superfamily RAM_45545 PF07690 Major Facilitator Superfamily RAM_45555 PF01139 tRNA-splicing ligase RtcB RAM_45560 PF01435 Peptidase family M48 RAM_45570 PF01118 Semialdehyde dehydrogenase, NAD binding domain RAM_45570 PF02774 Semialdehyde dehydrogenase, dimerisation domain RAM_45575 PF00696 Amino acid kinase family RAM_45575 PF01842 ACT domain RAM_45575 PF13840 ACT domain RAM_45580 PF00881 Nitroreductase family RAM_45590 PF00682 HMGL-like RAM_45590 PF08502 LeuA allosteric (dimerisation) domain RAM_45595 PF08279 HTH domain RAM_45595 PF13280 RAM_45595 RAM_45600 PF00106 short chain dehydrogenase RAM_45605 PF09335 RAM_45605 RAM_45610 PF00578 AhpC/TSA family RAM_45615 PF00440 Bacterial regulatory proteins, tetR family RAM_45615 PF16925 RAM_45615 RAM_45620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RAM_45620 PF03466 LysR substrate binding domain RAM_45625 PF00892 EamA-like transporter family RAM_45630 PF09335 RAM_45630 RAM_45635 PF13474 SnoaL-like domain RAM_45640 PF03795 YCII-related domain RAM_45645 PF04542 Sigma-70 region 2 RAM_45645 PF08281 Sigma-70, region 4 RAM_45650 PF00005 ABC transporter RAM_45650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_45655 PF00005 ABC transporter RAM_45655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RAM_45660 PF00528 Binding-protein-dependent transport system inner membrane component RAM_45660 PF12911 RAM_45660 RAM_45665 PF00528 Binding-protein-dependent transport system inner membrane component RAM_45670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RAM_45675 PF10066 RAM_45675 RAM_45680 PF00535 Glycosyl transferase family 2 RAM_45700 PF00535 Glycosyl transferase family 2 RAM_45705 PF02350 UDP-N-acetylglucosamine 2-epimerase RAM_45710 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RAM_45715 PF00633 Helix-hairpin-helix motif RAM_45715 PF02132 RecR protein RAM_45715 PF13662 Toprim domain RAM_45720 PF02575 YbaB/EbfC DNA-binding family RAM_45725 PF01520 N-acetylmuramoyl-L-alanine amidase RAM_45730 PF01638 HxlR-like helix-turn-helix RAM_45735 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_45740 PF00665 Integrase core domain RAM_45740 PF13276 RAM_45740 RAM_45745 PF01527 Transposase RAM_45750 PF12169 DNA polymerase III subunits gamma and tau domain III RAM_45750 PF13177 DNA polymerase III, delta subunit RAM_45755 PF03752 RAM_45755 RAM_45765 PF03029 Conserved hypothetical ATP binding protein RAM_45770 PF05331 RAM_45770 RAM_45775 PF03259 Roadblock/LC7 domain RAM_45780 PF00672 HAMP domain RAM_45780 PF08376 Nitrate and nitrite sensing RAM_45785 PF00005 ABC transporter RAM_45790 PF00528 Binding-protein-dependent transport system inner membrane component RAM_45795 PF13379 NMT1-like family RAM_45800 PF13231 RAM_45800 RAM_45805 PF00512 His Kinase A (phospho-acceptor) domain RAM_45805 PF00672 HAMP domain RAM_45805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_45810 PF00072 Response regulator receiver domain RAM_45810 PF00486 Transcriptional regulatory protein, C terminal RAM_45820 PF07730 Histidine kinase RAM_45825 PF00072 Response regulator receiver domain RAM_45825 PF00196 Bacterial regulatory proteins, luxR family RAM_45835 PF04075 Domain of unknown function (DUF385) RAM_45840 PF00440 Bacterial regulatory proteins, tetR family RAM_45845 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_45845 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_45850 PF00801 PKD domain RAM_45850 PF07995 Glucose / Sorbosone dehydrogenase RAM_45850 PF08310 RAM_45850 RAM_45855 PF03734 L,D-transpeptidase catalytic domain RAM_45865 PF00069 Protein kinase domain RAM_45870 PF02384 N-6 DNA Methylase RAM_45875 PF13672 Protein phosphatase 2C RAM_45890 PF01580 FtsK/SpoIIIE family RAM_45920 PF00932 Lamin Tail Domain RAM_45920 PF03372 Endonuclease/Exonuclease/phosphatase family RAM_45925 PF09587 Bacterial capsule synthesis protein PGA_cap RAM_45935 PF07858 Limonene-1,2-epoxide hydrolase catalytic domain RAM_45940 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RAM_45960 PF13460 NADH(P)-binding RAM_45965 PF05532 CsbD-like RAM_45970 PF14437 RAM_45970 RAM_45980 PF01546 Peptidase family M20/M25/M40 RAM_45980 PF07687 Peptidase dimerisation domain RAM_45985 PF04185 Phosphoesterase family RAM_45985 PF05506 RAM_45985 RAM_45990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_45995 PF03928 Domain of unknown function (DUF336) RAM_46000 PF01872 RibD C-terminal domain RAM_46005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RAM_46005 PF03129 Anticodon binding domain RAM_46010 PF13411 MerR HTH family regulatory protein RAM_46015 PF00528 Binding-protein-dependent transport system inner membrane component RAM_46020 PF00528 Binding-protein-dependent transport system inner membrane component RAM_46025 PF00005 ABC transporter RAM_46025 PF08402 TOBE domain RAM_46030 PF13416 Bacterial extracellular solute-binding protein RAM_46035 PF00392 Bacterial regulatory proteins, gntR family RAM_46035 PF07729 FCD domain RAM_46040 PF00701 Dihydrodipicolinate synthetase family RAM_46045 PF00487 RAM_46045 RAM_46055 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RAM_46055 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RAM_46060 PF01037 AsnC family RAM_46060 PF13404 AsnC-type helix-turn-helix domain RAM_46070 PF00149 Calcineurin-like phosphoesterase RAM_46070 PF13385 Concanavalin A-like lectin/glucanases superfamily RAM_46075 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_46085 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_46090 PF10101 RAM_46090 RAM_46095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_46105 PF01207 Dihydrouridine synthase (Dus) RAM_46110 PF16499 RAM_46110 RAM_46115 PF00652 Ricin-type beta-trefoil lectin domain RAM_46115 PF16499 RAM_46115 RAM_46125 PF00392 Bacterial regulatory proteins, gntR family RAM_46125 PF07702 UTRA domain RAM_46130 PF03747 ADP-ribosylglycohydrolase RAM_46135 PF00294 pfkB family carbohydrate kinase RAM_46140 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin RAM_46145 PF00857 Isochorismatase family RAM_46150 PF00561 alpha/beta hydrolase fold RAM_46155 PF00293 NUDIX domain RAM_46160 PF00990 GGDEF domain RAM_46170 PF03816 Cell envelope-related transcriptional attenuator domain RAM_46175 PF01895 PhoU domain RAM_46180 PF00005 ABC transporter RAM_46185 PF00528 Binding-protein-dependent transport system inner membrane component RAM_46190 PF00528 Binding-protein-dependent transport system inner membrane component RAM_46195 PF12849 PBP superfamily domain RAM_46200 PF00583 Acetyltransferase (GNAT) family RAM_46205 PF00486 Transcriptional regulatory protein, C terminal RAM_46210 PF11209 RAM_46210 RAM_46215 PF00085 Thioredoxin RAM_46220 PF14340 RAM_46220 RAM_46225 PF00581 Rhodanese-like domain RAM_46230 PF07210 RAM_46230 RAM_46240 PF08768 Domain of unknown function (DUF1794) RAM_46245 PF02682 Allophanate hydrolase subunit 1 RAM_46250 PF02626 Allophanate hydrolase subunit 2 RAM_46260 PF01063 Aminotransferase class IV RAM_46265 PF01571 Aminomethyltransferase folate-binding domain RAM_46265 PF08669 Glycine cleavage T-protein C-terminal barrel domain RAM_46275 PF06089 RAM_46275 RAM_46285 PF11273 RAM_46285 RAM_46290 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RAM_46290 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RAM_46295 PF12822 Protein of unknown function (DUF3816) RAM_46300 PF00005 ABC transporter RAM_46305 PF02361 Cobalt transport protein RAM_46315 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_46315 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_46320 PF04892 RAM_46320 RAM_46325 PF00583 Acetyltransferase (GNAT) family RAM_46330 PF00472 RF-1 domain RAM_46335 PF00586 AIR synthase related protein, N-terminal domain RAM_46335 PF02769 AIR synthase related protein, C-terminal domain RAM_46340 PF13522 Glutamine amidotransferase domain RAM_46350 PF04149 RAM_46350 RAM_46355 PF13560 Helix-turn-helix domain RAM_46360 PF04672 S-adenosyl methyltransferase RAM_46375 PF01183 Glycosyl hydrolases family 25 RAM_46380 PF01183 Glycosyl hydrolases family 25 RAM_46390 PF13576 Pentapeptide repeats (9 copies) RAM_46395 PF13936 Helix-turn-helix domain RAM_46400 PF00586 AIR synthase related protein, N-terminal domain RAM_46400 PF02769 AIR synthase related protein, C-terminal domain RAM_46405 PF00005 ABC transporter RAM_46405 PF00664 ABC transporter transmembrane region RAM_46410 PF00005 ABC transporter RAM_46410 PF00664 ABC transporter transmembrane region RAM_46415 PF13507 CobB/CobQ-like glutamine amidotransferase domain RAM_46420 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase RAM_46425 PF00732 GMC oxidoreductase RAM_46425 PF05199 GMC oxidoreductase RAM_46430 PF00171 Aldehyde dehydrogenase family RAM_46435 PF07690 Major Facilitator Superfamily RAM_46440 PF01022 Bacterial regulatory protein, arsR family RAM_46445 PF13350 Tyrosine phosphatase family RAM_46450 PF13483 Beta-lactamase superfamily domain RAM_46455 PF10096 RAM_46455 RAM_46460 PF03358 NADPH-dependent FMN reductase RAM_46465 PF01259 SAICAR synthetase RAM_46470 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase RAM_46475 PF03473 MOSC domain RAM_46475 PF03476 MOSC N-terminal beta barrel domain RAM_46480 PF00005 ABC transporter RAM_46485 PF00528 Binding-protein-dependent transport system inner membrane component RAM_46490 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_46495 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_46500 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_46505 PF00206 Lyase RAM_46505 PF10397 Adenylosuccinate lyase C-terminus RAM_46510 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain RAM_46510 PF13378 Enolase C-terminal domain-like RAM_46515 PF00106 short chain dehydrogenase RAM_46515 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_46520 PF10282 Lactonase, 7-bladed beta-propeller RAM_46525 PF00392 Bacterial regulatory proteins, gntR family RAM_46525 PF07729 FCD domain RAM_46530 PF00440 Bacterial regulatory proteins, tetR family RAM_46530 PF13977 Bacterial transcriptional repressor RAM_46540 PF04542 Sigma-70 region 2 RAM_46540 PF08281 Sigma-70, region 4 RAM_46545 PF01212 Beta-eliminating lyase RAM_46550 PF13419 Haloacid dehalogenase-like hydrolase RAM_46555 PF04672 S-adenosyl methyltransferase RAM_46565 PF00155 Aminotransferase class I and II RAM_46570 PF01464 Transglycosylase SLT domain RAM_46570 PF06013 Proteins of 100 residues with WXG RAM_46580 PF14011 EspG family RAM_46590 PF12079 RAM_46590 RAM_46600 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RAM_46600 PF02843 Phosphoribosylglycinamide synthetase, C domain RAM_46600 PF02844 Phosphoribosylglycinamide synthetase, N domain RAM_46605 PF03009 Glycerophosphoryl diester phosphodiesterase family RAM_46610 PF00144 Beta-lactamase RAM_46615 PF13520 Amino acid permease RAM_46625 PF00691 OmpA family RAM_46630 PF00294 pfkB family carbohydrate kinase RAM_46635 PF00925 GTP cyclohydrolase II RAM_46640 PF07690 Major Facilitator Superfamily RAM_46645 PF00999 Sodium/hydrogen exchanger family RAM_46650 PF00296 Luciferase-like monooxygenase RAM_46655 PF02566 OsmC-like protein RAM_46660 PF00709 Adenylosuccinate synthetase RAM_46670 PF07510 RAM_46670 RAM_46675 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RAM_46680 PF13454 FAD-NAD(P)-binding RAM_46690 PF07690 Major Facilitator Superfamily RAM_46695 PF00990 GGDEF domain RAM_46700 PF00440 Bacterial regulatory proteins, tetR family RAM_46705 PF03583 Secretory lipase RAM_46710 PF11349 RAM_46710 RAM_46720 PF01116 Fructose-bisphosphate aldolase class-II RAM_46725 PF00296 Luciferase-like monooxygenase RAM_46730 PF00248 Aldo/keto reductase family RAM_46735 PF00106 short chain dehydrogenase RAM_46750 PF13738 Pyridine nucleotide-disulphide oxidoreductase RAM_46755 PF10118 RAM_46755 RAM_46765 PF00111 2Fe-2S iron-sulfur cluster binding domain RAM_46770 PF03795 YCII-related domain RAM_46775 PF04542 Sigma-70 region 2 RAM_46775 PF08281 Sigma-70, region 4 RAM_46780 PF01979 Amidohydrolase family RAM_46790 PF09335 RAM_46790 RAM_46795 PF01850 PIN domain RAM_46805 PF01565 FAD binding domain RAM_46805 PF02913 FAD linked oxidases, C-terminal domain RAM_46810 PF01243 Pyridoxamine 5'-phosphate oxidase RAM_46815 PF01047 MarR family RAM_46820 PF07690 Major Facilitator Superfamily RAM_46820 PF13620 Carboxypeptidase regulatory-like domain RAM_46825 PF04264 YceI-like domain RAM_46830 PF09335 RAM_46830 RAM_46835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RAM_46840 PF03171 2OG-Fe(II) oxygenase superfamily RAM_46840 PF14226 non-haem dioxygenase in morphine synthesis N-terminal RAM_46845 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_46855 PF00294 pfkB family carbohydrate kinase RAM_46860 PF00005 ABC transporter RAM_46865 PF02653 RAM_46865 RAM_46870 PF13407 Periplasmic binding protein domain RAM_46875 PF00356 Bacterial regulatory proteins, lacI family RAM_46875 PF13377 Periplasmic binding protein-like domain RAM_46880 PF13377 Periplasmic binding protein-like domain RAM_46885 PF03663 Glycosyl hydrolase family 76 RAM_46890 PF00384 Molybdopterin oxidoreductase RAM_46890 PF01568 Molydopterin dinucleotide binding domain RAM_46890 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RAM_46895 PF00150 Cellulase (glycosyl hydrolase family 5) RAM_46900 PF10861 RAM_46900 RAM_46910 PF03780 RAM_46910 RAM_46920 PF04542 Sigma-70 region 2 RAM_46920 PF08281 Sigma-70, region 4 RAM_46925 PF00156 Phosphoribosyl transferase domain RAM_46930 PF02687 RAM_46930 RAM_46935 PF00005 ABC transporter RAM_46940 PF00106 short chain dehydrogenase RAM_46955 PF00004 ATPase family associated with various cellular activities (AAA) RAM_46955 PF02861 Clp amino terminal domain RAM_46955 PF07724 AAA domain (Cdc48 subfamily) RAM_46955 PF10431 C-terminal, D2-small domain, of ClpB protein RAM_46960 PF07690 Major Facilitator Superfamily RAM_46965 PF12802 MarR family RAM_46970 PF00042 Globin RAM_46970 PF00175 Oxidoreductase NAD-binding domain RAM_46970 PF00970 Oxidoreductase FAD-binding domain RAM_46975 PF00042 Globin RAM_46975 PF00175 Oxidoreductase NAD-binding domain RAM_46975 PF00970 Oxidoreductase FAD-binding domain RAM_46980 PF01738 Dienelactone hydrolase family RAM_46985 PF03067 Chitin binding domain RAM_46990 PF03713 Domain of unknown function (DUF305) RAM_46995 PF13411 MerR HTH family regulatory protein RAM_47000 PF00226 DnaJ domain RAM_47000 PF00684 DnaJ central domain RAM_47000 PF01556 DnaJ C terminal domain RAM_47005 PF01025 GrpE RAM_47010 PF00012 Hsp70 protein RAM_47015 PF13349 RAM_47015 RAM_47020 PF01161 Phosphatidylethanolamine-binding protein RAM_47030 PF04149 RAM_47030 RAM_47035 PF13508 Acetyltransferase (GNAT) domain RAM_47040 PF00440 Bacterial regulatory proteins, tetR family RAM_47045 PF02754 RAM_47045 RAM_47045 PF13183 4Fe-4S dicluster domain RAM_47050 PF05331 RAM_47050 RAM_47055 PF01545 Cation efflux family RAM_47060 PF00188 Cysteine-rich secretory protein family RAM_47065 PF01345 RAM_47065 RAM_47070 PF01047 MarR family RAM_47075 PF01494 FAD binding domain RAM_47080 PF00692 dUTPase RAM_47085 PF09995 RAM_47085 RAM_47090 PF12680 SnoaL-like domain RAM_47095 PF04542 Sigma-70 region 2 RAM_47095 PF08281 Sigma-70, region 4 RAM_47100 PF03795 YCII-related domain RAM_47105 PF00067 Cytochrome P450 RAM_47115 PF04075 Domain of unknown function (DUF385) RAM_47120 PF13302 Acetyltransferase (GNAT) domain RAM_47125 PF04237 YjbR RAM_47130 PF00149 Calcineurin-like phosphoesterase RAM_47130 PF02872 5'-nucleotidase, C-terminal domain RAM_47135 PF12697 Alpha/beta hydrolase family RAM_47140 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_47145 PF04892 RAM_47145 RAM_47155 PF03167 Uracil DNA glycosylase superfamily RAM_47160 PF00072 Response regulator receiver domain RAM_47160 PF00196 Bacterial regulatory proteins, luxR family RAM_47165 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RAM_47165 PF02770 Acyl-CoA dehydrogenase, middle domain RAM_47165 PF12418 RAM_47165 RAM_47165 PF12806 RAM_47165 RAM_47175 PF07690 Major Facilitator Superfamily RAM_47180 PF13560 Helix-turn-helix domain RAM_47185 PF13855 Leucine rich repeat RAM_47190 PF04294 RAM_47190 RAM_47190 PF12229 Putative peptidoglycan binding domain RAM_47195 PF00166 Chaperonin 10 Kd subunit RAM_47200 PF00578 AhpC/TSA family RAM_47200 PF01436 NHL repeat RAM_47210 PF10604 Polyketide cyclase / dehydrase and lipid transport RAM_47220 PF00005 ABC transporter RAM_47225 PF00528 Binding-protein-dependent transport system inner membrane component RAM_47230 PF00497 Bacterial extracellular solute-binding proteins, family 3 RAM_47235 PF14403 RAM_47235 RAM_47240 PF04168 RAM_47240 RAM_47245 PF01841 Transglutaminase-like superfamily RAM_47245 PF08379 RAM_47245 RAM_47255 PF00440 Bacterial regulatory proteins, tetR family RAM_47260 PF01546 Peptidase family M20/M25/M40 RAM_47260 PF07687 Peptidase dimerisation domain RAM_47265 PF00676 Dehydrogenase E1 component RAM_47270 PF02779 Transketolase, pyrimidine binding domain RAM_47270 PF02780 Transketolase, C-terminal domain RAM_47275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RAM_47275 PF00364 Biotin-requiring enzyme RAM_47275 PF02817 e3 binding domain RAM_47280 PF00440 Bacterial regulatory proteins, tetR family RAM_47285 PF00005 ABC transporter RAM_47285 PF00664 ABC transporter transmembrane region RAM_47290 PF13602 Zinc-binding dehydrogenase RAM_47295 PF08240 Alcohol dehydrogenase GroES-like domain RAM_47300 PF00440 Bacterial regulatory proteins, tetR family RAM_47305 PF04186 RAM_47305 RAM_47310 PF03852 DNA mismatch endonuclease Vsr RAM_47315 PF00145 C-5 cytosine-specific DNA methylase RAM_47320 PF00176 SNF2 family N-terminal domain RAM_47335 PF02036 SCP-2 sterol transfer family RAM_47340 PF02036 SCP-2 sterol transfer family RAM_47345 PF00440 Bacterial regulatory proteins, tetR family RAM_47350 PF01575 MaoC like domain RAM_47355 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_47360 PF00108 Thiolase, N-terminal domain RAM_47360 PF02803 Thiolase, C-terminal domain RAM_47365 PF07681 RAM_47365 RAM_47370 PF07739 TipAS antibiotic-recognition domain RAM_47370 PF13411 MerR HTH family regulatory protein RAM_47380 PF13191 AAA ATPase domain RAM_47390 PF00583 Acetyltransferase (GNAT) family RAM_47390 PF12802 MarR family RAM_47395 PF02627 Carboxymuconolactone decarboxylase family RAM_47410 PF11755 RAM_47410 RAM_47415 PF00561 alpha/beta hydrolase fold RAM_47415 PF08386 TAP-like protein RAM_47420 PF13560 Helix-turn-helix domain RAM_47425 PF08445 FR47-like protein RAM_47430 PF14436 RAM_47430 RAM_47440 PF00005 ABC transporter RAM_47445 PF00296 Luciferase-like monooxygenase RAM_47450 PF00296 Luciferase-like monooxygenase RAM_47455 PF00821 Phosphoenolpyruvate carboxykinase RAM_47455 PF17297 RAM_47455 RAM_47465 PF00350 Dynamin family RAM_47470 PF01025 GrpE RAM_47480 PF00350 Dynamin family RAM_47485 PF07730 Histidine kinase RAM_47490 PF00072 Response regulator receiver domain RAM_47490 PF00196 Bacterial regulatory proteins, luxR family RAM_47495 PF00106 short chain dehydrogenase RAM_47500 PF00440 Bacterial regulatory proteins, tetR family RAM_47505 PF00005 ABC transporter RAM_47510 PF12730 RAM_47510 RAM_47515 PF00005 ABC transporter RAM_47530 PF02390 Putative methyltransferase RAM_47540 PF00005 ABC transporter RAM_47545 PF07730 Histidine kinase RAM_47550 PF00072 Response regulator receiver domain RAM_47550 PF00196 Bacterial regulatory proteins, luxR family RAM_47565 PF01979 Amidohydrolase family RAM_47570 PF00106 short chain dehydrogenase RAM_47575 PF01345 RAM_47575 RAM_47575 PF17210 RAM_47575 RAM_47580 PF05787 Bacterial protein of unknown function (DUF839) RAM_47585 PF07690 Major Facilitator Superfamily RAM_47590 PF01047 MarR family RAM_47595 PF13419 Haloacid dehalogenase-like hydrolase RAM_47605 PF04542 Sigma-70 region 2 RAM_47605 PF08281 Sigma-70, region 4 RAM_47610 PF01658 Myo-inositol-1-phosphate synthase RAM_47615 PF03551 Transcriptional regulator PadR-like family RAM_47620 PF17249 RAM_47620 RAM_47625 PF00905 Penicillin binding protein transpeptidase domain RAM_47625 PF00912 Transglycosylase RAM_47630 PF00905 Penicillin binding protein transpeptidase domain RAM_47630 PF00912 Transglycosylase RAM_47635 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RAM_47635 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RAM_47640 PF00480 ROK family RAM_47645 PF09594 RAM_47645 RAM_47650 PF01261 Xylose isomerase-like TIM barrel RAM_47670 PF01250 Ribosomal protein S6 RAM_47675 PF00436 Single-strand binding protein family RAM_47680 PF01084 Ribosomal protein S18 RAM_47685 PF01281 Ribosomal protein L9, N-terminal domain RAM_47685 PF03948 Ribosomal protein L9, C-terminal domain RAM_47695 PF12079 RAM_47695 RAM_47705 PF14011 EspG family RAM_47710 PF00772 DnaB-like helicase N terminal domain RAM_47710 PF03796 DnaB-like helicase C terminal domain RAM_47715 PF12802 MarR family RAM_47725 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RAM_47740 PF01594 RAM_47740 RAM_47745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_47750 PF00072 Response regulator receiver domain RAM_47750 PF00196 Bacterial regulatory proteins, luxR family RAM_47760 PF08044 RAM_47760 RAM_47765 PF07690 Major Facilitator Superfamily RAM_47770 PF00391 PEP-utilising enzyme, mobile domain RAM_47770 PF02896 PEP-utilising enzyme, TIM barrel domain RAM_47770 PF05524 PEP-utilising enzyme, N-terminal RAM_47780 PF00294 pfkB family carbohydrate kinase RAM_47800 PF02575 YbaB/EbfC DNA-binding family RAM_47815 PF14011 EspG family RAM_47825 PF12079 RAM_47825 RAM_47830 PF00440 Bacterial regulatory proteins, tetR family RAM_47835 PF13561 Enoyl-(Acyl carrier protein) reductase RAM_47840 PF08264 Anticodon-binding domain of tRNA RAM_47840 PF09334 tRNA synthetases class I (M) RAM_47840 PF13603 Leucyl-tRNA synthetase, Domain 2 RAM_47845 PF13449 Esterase-like activity of phytase RAM_47850 PF13630 RAM_47850 RAM_47855 PF02622 Uncharacterized ACR, COG1678 RAM_47860 PF07690 Major Facilitator Superfamily RAM_47865 PF02575 YbaB/EbfC DNA-binding family RAM_47880 PF01129 NAD:arginine ADP-ribosyltransferase RAM_47880 PF04607 Region found in RelA / SpoT proteins RAM_47880 PF15644 Papain fold toxin 1 RAM_47890 PF14021 RAM_47890 RAM_47895 PF03747 ADP-ribosylglycohydrolase RAM_47895 PF15567 RAM_47895 RAM_47900 PF03747 ADP-ribosylglycohydrolase RAM_47900 PF15567 RAM_47900 RAM_47905 PF14021 RAM_47905 RAM_47910 PF13649 Methyltransferase domain RAM_47915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RAM_47920 PF01743 Poly A polymerase head domain RAM_47920 PF01966 HD domain RAM_47920 PF12627 Probable RNA and SrmB- binding site of polymerase A RAM_47925 PF00293 NUDIX domain RAM_47940 PF03023 RAM_47940 RAM_47950 PF04542 Sigma-70 region 2 RAM_47950 PF08281 Sigma-70, region 4 RAM_47960 PF07992 Pyridine nucleotide-disulphide oxidoreductase RAM_47965 PF00085 Thioredoxin RAM_47970 PF01471 Putative peptidoglycan binding domain RAM_47970 PF01520 N-acetylmuramoyl-L-alanine amidase RAM_47975 PF00583 Acetyltransferase (GNAT) family RAM_47980 PF00155 Aminotransferase class I and II RAM_47985 PF01820 D-ala D-ala ligase N-terminus RAM_47985 PF07478 D-ala D-ala ligase C-terminus RAM_47990 PF02195 ParB-like nuclease domain RAM_47995 PF13614 AAA domain RAM_48000 PF02527 rRNA small subunit methyltransferase G RAM_48010 PF01424 R3H domain RAM_48015 PF02096 60Kd inner membrane protein RAM_48020 PF01809 RAM_48020 RAM_48025 PF00468 Ribosomal protein L34