RAM_00005 SM00382 ATPases associated with a variety of cellular activities RAM_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain RAM_00010 SM00480 DNA polymerase III beta subunit RAM_00015 SM01350 RAM_00015 RAM_00020 SM00382 ATPases associated with a variety of cellular activities RAM_00030 SM00387 Histidine kinase-like ATPases RAM_00030 SM00433 TopoisomeraseII RAM_00035 SM00434 DNA Topoisomerase IV RAM_00095 SM00530 Helix-turn-helix XRE-family like proteins RAM_00125 SM00382 ATPases associated with a variety of cellular activities RAM_00135 SM00862 Transcriptional regulatory protein, C terminal RAM_00135 SM01043 Bacterial transcriptional activator domain RAM_00215 SM00382 ATPases associated with a variety of cellular activities RAM_00225 SM00421 helix_turn_helix, Lux Regulon RAM_00225 SM00448 cheY-homologous receiver domain RAM_00240 SM00382 ATPases associated with a variety of cellular activities RAM_00255 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_00255 SM00740 RAM_00255 RAM_00260 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_00275 SM00331 Sigma factor PP2C-like phosphatases RAM_00275 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RAM_00280 SM00240 Forkhead associated domain RAM_00285 SM00240 Forkhead associated domain RAM_00290 SM00020 Trypsin-like serine protease RAM_00295 SM00020 Trypsin-like serine protease RAM_00330 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_00330 SM00895 RAM_00330 RAM_00350 SM00382 ATPases associated with a variety of cellular activities RAM_00355 SM00382 ATPases associated with a variety of cellular activities RAM_00380 SM00421 helix_turn_helix, Lux Regulon RAM_00410 SM01400 RAM_00410 RAM_00455 SM00530 Helix-turn-helix XRE-family like proteins RAM_00490 SM00382 ATPases associated with a variety of cellular activities RAM_00525 SM00822 RAM_00525 RAM_00530 SM00984 UDP binding domain RAM_00565 SM00530 Helix-turn-helix XRE-family like proteins RAM_00575 SM00421 helix_turn_helix, Lux Regulon RAM_00575 SM00448 cheY-homologous receiver domain RAM_00660 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_00660 SM01232 RAM_00660 RAM_00665 SM00387 Histidine kinase-like ATPases RAM_00675 SM00606 Cellulose Binding Domain Type IV RAM_00680 SM00448 cheY-homologous receiver domain RAM_00680 SM00850 LytTr DNA-binding domain RAM_00695 SM00450 Rhodanese Homology Domain RAM_00790 SM00327 von Willebrand factor (vWF) type A domain RAM_00805 SM00346 helix_turn_helix isocitrate lyase regulation RAM_00820 SM00245 tail specific protease RAM_00835 SM00382 ATPases associated with a variety of cellular activities RAM_00845 SM00421 helix_turn_helix, Lux Regulon RAM_00845 SM00448 cheY-homologous receiver domain RAM_00865 SM00894 Excalibur calcium-binding domain RAM_00870 SM00479 RAM_00870 RAM_00915 SM00506 Appr-1"-p processing enzyme RAM_00925 SM00855 Phosphoglycerate mutase family RAM_01005 SM00530 Helix-turn-helix XRE-family like proteins RAM_01010 SM00028 Tetratricopeptide repeats RAM_01010 SM00862 Transcriptional regulatory protein, C terminal RAM_01010 SM01043 Bacterial transcriptional activator domain RAM_01070 SM00822 RAM_01070 RAM_01115 SM00563 Phosphate acyltransferases RAM_01140 SM00014 Acid phosphatase homologues RAM_01210 SM00382 ATPases associated with a variety of cellular activities RAM_01230 SM00829 Enoylreductase RAM_01245 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_01280 SM00822 RAM_01280 RAM_01290 SM00448 cheY-homologous receiver domain RAM_01295 SM00387 Histidine kinase-like ATPases RAM_01300 SM00382 ATPases associated with a variety of cellular activities RAM_01325 SM00421 helix_turn_helix, Lux Regulon RAM_01340 SM00344 helix_turn_helix ASNC type RAM_01350 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain RAM_01350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_01360 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_01360 SM00895 RAM_01360 RAM_01400 SM00636 RAM_01400 RAM_01400 SM00637 RAM_01400 RAM_01405 SM00637 RAM_01405 RAM_01420 SM00671 Sel1-like repeats. RAM_01515 SM00382 ATPases associated with a variety of cellular activities RAM_01595 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_01625 SM00998 Adenylosuccinate lyase C-terminus RAM_01695 SM00020 Trypsin-like serine protease RAM_01710 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_01710 SM01260 RAM_01710 RAM_01740 SM00357 Cold shock protein domain RAM_01770 SM00062 Bacterial periplasmic substrate-binding proteins RAM_01775 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_01825 SM00943 Bifunctional DNA primase/polymerase, N-terminal RAM_01910 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_01960 SM00052 Putative diguanylate phosphodiesterase RAM_01960 SM00091 PAS domain RAM_01960 SM00267 diguanylate cyclase RAM_02000 SM00346 helix_turn_helix isocitrate lyase regulation RAM_02020 SM01350 RAM_02020 RAM_02025 SM00849 Metallo-beta-lactamase superfamily RAM_02030 SM00530 Helix-turn-helix XRE-family like proteins RAM_02145 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_02190 SM00530 Helix-turn-helix XRE-family like proteins RAM_02260 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_02270 SM00829 Enoylreductase RAM_02285 SM00829 Enoylreductase RAM_02345 SM00855 Phosphoglycerate mutase family RAM_02350 SM00421 helix_turn_helix, Lux Regulon RAM_02360 SM00387 Histidine kinase-like ATPases RAM_02360 SM00388 His Kinase A (phosphoacceptor) domain RAM_02365 SM00448 cheY-homologous receiver domain RAM_02365 SM00862 Transcriptional regulatory protein, C terminal RAM_02400 SM01155 RAM_02400 RAM_02410 SM00563 Phosphate acyltransferases RAM_02415 SM00387 Histidine kinase-like ATPases RAM_02420 SM00421 helix_turn_helix, Lux Regulon RAM_02420 SM00448 cheY-homologous receiver domain RAM_02460 SM00881 CoA binding domain RAM_02485 SM00342 helix_turn_helix, arabinose operon control protein RAM_02490 SM01004 Delta-aminolevulinic acid dehydratase RAM_02515 SM00382 ATPases associated with a variety of cellular activities RAM_02540 SM00855 Phosphoglycerate mutase family RAM_02580 SM00344 helix_turn_helix ASNC type RAM_02645 SM00862 Transcriptional regulatory protein, C terminal RAM_02645 SM01043 Bacterial transcriptional activator domain RAM_02690 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_02695 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_02695 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RAM_02785 SM00344 helix_turn_helix ASNC type RAM_02805 SM00984 UDP binding domain RAM_02840 SM00710 Parallel beta-helix repeats RAM_02855 SM00014 Acid phosphatase homologues RAM_02865 SM00710 Parallel beta-helix repeats RAM_02980 SM00382 ATPases associated with a variety of cellular activities RAM_02980 SM00464 Found in ATP-dependent protease La (LON) RAM_02995 SM00052 Putative diguanylate phosphodiesterase RAM_02995 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_02995 SM00267 diguanylate cyclase RAM_03025 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_03040 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. RAM_03045 SM00649 Ribosomal protein L11/L12 RAM_03075 SM00382 ATPases associated with a variety of cellular activities RAM_03155 SM00822 RAM_03155 RAM_03155 SM00823 Phosphopantetheine attachment site RAM_03155 SM00825 Beta-ketoacyl synthase RAM_03155 SM00826 RAM_03155 RAM_03155 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_03155 SM01294 RAM_03155 RAM_03160 SM00822 RAM_03160 RAM_03160 SM00823 Phosphopantetheine attachment site RAM_03160 SM00825 Beta-ketoacyl synthase RAM_03160 SM00826 RAM_03160 RAM_03160 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_03160 SM01294 RAM_03160 RAM_03165 SM00822 RAM_03165 RAM_03165 SM00823 Phosphopantetheine attachment site RAM_03165 SM00825 Beta-ketoacyl synthase RAM_03165 SM00826 RAM_03165 RAM_03165 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_03165 SM01294 RAM_03165 RAM_03170 SM00822 RAM_03170 RAM_03170 SM00823 Phosphopantetheine attachment site RAM_03170 SM00825 Beta-ketoacyl synthase RAM_03170 SM00826 RAM_03170 RAM_03170 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_03170 SM01294 RAM_03170 RAM_03175 SM00822 RAM_03175 RAM_03175 SM00823 Phosphopantetheine attachment site RAM_03175 SM00825 Beta-ketoacyl synthase RAM_03175 SM00826 RAM_03175 RAM_03175 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_03175 SM01294 RAM_03175 RAM_03310 SM00824 Thioesterase RAM_03320 SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. RAM_03330 SM00861 Transketolase, pyrimidine binding domain RAM_03345 SM00421 helix_turn_helix, Lux Regulon RAM_03355 SM00663 RNA polymerase I subunit A N-terminus RAM_03370 SM00344 helix_turn_helix ASNC type RAM_03385 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_03445 SM00838 Elongation factor G C-terminus RAM_03445 SM00889 Elongation factor G, domain IV RAM_03455 SM01403 RAM_03455 RAM_03475 SM01382 RAM_03475 RAM_03475 SM01383 RAM_03475 RAM_03490 SM00322 K homology RNA-binding domain RAM_03510 SM01374 RAM_03510 RAM_03515 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. RAM_03610 SM00363 S4 RNA-binding domain RAM_03610 SM01390 RAM_03610 RAM_03615 SM00662 RNA polymerases D RAM_03765 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_03765 SM01134 RAM_03765 RAM_03775 SM00382 ATPases associated with a variety of cellular activities RAM_03780 SM01005 Alanine racemase, C-terminal domain RAM_03850 SM00644 RAM_03850 RAM_03860 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_03865 SM00226 Low molecular weight phosphatase family RAM_03875 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_03885 SM00883 Chaperonin 10 Kd subunit RAM_03900 SM00422 helix_turn_helix, mercury resistance RAM_03910 SM00421 helix_turn_helix, Lux Regulon RAM_03910 SM00448 cheY-homologous receiver domain RAM_03940 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_03940 SM01240 RAM_03940 RAM_03950 SM01240 RAM_03950 RAM_04020 SM00387 Histidine kinase-like ATPases RAM_04025 SM00421 helix_turn_helix, Lux Regulon RAM_04025 SM00448 cheY-homologous receiver domain RAM_04045 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_04065 SM00830 Chorismate mutase type II RAM_04105 SM00881 CoA binding domain RAM_04125 SM00798 AICARFT/IMPCHase bienzyme RAM_04125 SM00851 MGS-like domain RAM_04165 SM00481 DNA polymerase alpha chain like domain RAM_04200 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_04225 SM00342 helix_turn_helix, arabinose operon control protein RAM_04255 SM01329 RAM_04255 RAM_04275 SM00849 Metallo-beta-lactamase superfamily RAM_04355 SM00776 RAM_04355 RAM_04370 SM00382 ATPases associated with a variety of cellular activities RAM_04390 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain RAM_04415 SM00487 DEAD-like helicases superfamily RAM_04415 SM00490 helicase superfamily c-terminal domain RAM_04440 SM00829 Enoylreductase RAM_04500 SM01133 RAM_04500 RAM_04540 SM00422 helix_turn_helix, mercury resistance RAM_04570 SM00448 cheY-homologous receiver domain RAM_04570 SM00862 Transcriptional regulatory protein, C terminal RAM_04575 SM00387 Histidine kinase-like ATPases RAM_04575 SM00388 His Kinase A (phosphoacceptor) domain RAM_04645 SM00422 helix_turn_helix, mercury resistance RAM_04650 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_04760 SM00878 Biotin carboxylase C-terminal domain RAM_04810 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_04830 SM00421 helix_turn_helix, Lux Regulon RAM_04830 SM00448 cheY-homologous receiver domain RAM_04845 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_04875 SM00822 RAM_04875 RAM_04880 SM00342 helix_turn_helix, arabinose operon control protein RAM_04885 SM00460 Transglutaminase/protease-like homologues RAM_04945 SM00421 helix_turn_helix, Lux Regulon RAM_04945 SM00448 cheY-homologous receiver domain RAM_04990 SM00448 cheY-homologous receiver domain RAM_04990 SM00862 Transcriptional regulatory protein, C terminal RAM_04995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_04995 SM00387 Histidine kinase-like ATPases RAM_05000 SM00421 helix_turn_helix, Lux Regulon RAM_05005 SM00421 helix_turn_helix, Lux Regulon RAM_05005 SM00448 cheY-homologous receiver domain RAM_05055 SM01001 AIR carboxylase RAM_05185 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_05240 SM00880 RAM_05240 RAM_05265 SM00636 RAM_05265 RAM_05280 SM00530 Helix-turn-helix XRE-family like proteins RAM_05285 SM00495 Chitin-binding domain type 3 RAM_05290 SM00530 Helix-turn-helix XRE-family like proteins RAM_05335 SM00563 Phosphate acyltransferases RAM_05345 SM00382 ATPases associated with a variety of cellular activities RAM_05350 SM00382 ATPases associated with a variety of cellular activities RAM_05435 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_05455 SM00924 MgtE intracellular N domain RAM_05465 SM00244 prohibitin homologues RAM_05505 SM00382 ATPases associated with a variety of cellular activities RAM_05530 SM00421 helix_turn_helix, Lux Regulon RAM_05530 SM00448 cheY-homologous receiver domain RAM_05600 SM00481 DNA polymerase alpha chain like domain RAM_05630 SM00487 DEAD-like helicases superfamily RAM_05630 SM00490 helicase superfamily c-terminal domain RAM_05685 SM00450 Rhodanese Homology Domain RAM_05695 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_05720 SM00862 Transcriptional regulatory protein, C terminal RAM_05890 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_05910 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_05910 SM00895 RAM_05910 RAM_05935 SM00226 Low molecular weight phosphatase family RAM_05945 SM00830 Chorismate mutase type II RAM_05960 SM00855 Phosphoglycerate mutase family RAM_05975 SM00421 helix_turn_helix, Lux Regulon RAM_06055 SM00955 RAM_06055 RAM_06090 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_06090 SM00895 RAM_06090 RAM_06100 SM00382 ATPases associated with a variety of cellular activities RAM_06170 SM00957 SecA DEAD-like domain RAM_06170 SM00958 SecA preprotein cross-linking domain RAM_06190 SM01230 RAM_06190 RAM_06200 SM00344 helix_turn_helix ASNC type RAM_06205 SM00450 Rhodanese Homology Domain RAM_06235 SM01230 RAM_06235 RAM_06255 SM00341 Helicase and RNase D C-terminal RAM_06315 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_06345 SM00937 RAM_06345 RAM_06350 SM00382 ATPases associated with a variety of cellular activities RAM_06385 SM00421 helix_turn_helix, Lux Regulon RAM_06385 SM00448 cheY-homologous receiver domain RAM_06405 SM00267 diguanylate cyclase RAM_06415 SM00346 helix_turn_helix isocitrate lyase regulation RAM_06485 SM00421 helix_turn_helix, Lux Regulon RAM_06485 SM00448 cheY-homologous receiver domain RAM_06500 SM00028 Tetratricopeptide repeats RAM_06510 SM00382 ATPases associated with a variety of cellular activities RAM_06515 SM00487 DEAD-like helicases superfamily RAM_06515 SM00490 helicase superfamily c-terminal domain RAM_06515 SM00847 Helicase associated domain (HA2) Add an annotation RAM_06520 SM00062 Bacterial periplasmic substrate-binding proteins RAM_06560 SM00342 helix_turn_helix, arabinose operon control protein RAM_06575 SM00458 Ricin-type beta-trefoil RAM_06580 SM00434 DNA Topoisomerase IV RAM_06585 SM00387 Histidine kinase-like ATPases RAM_06585 SM00433 TopoisomeraseII RAM_06625 SM00560 LamG-like jellyroll fold domain RAM_06640 SM00382 ATPases associated with a variety of cellular activities RAM_06650 SM00354 helix_turn _helix lactose operon repressor RAM_06685 SM00382 ATPases associated with a variety of cellular activities RAM_06740 SM00458 Ricin-type beta-trefoil RAM_06780 SM00060 Fibronectin type 3 domain RAM_06825 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_06880 SM00382 ATPases associated with a variety of cellular activities RAM_06930 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_06935 SM00849 Metallo-beta-lactamase superfamily RAM_06960 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_06960 SM00866 RAM_06960 RAM_06965 SM00028 Tetratricopeptide repeats RAM_06965 SM00862 Transcriptional regulatory protein, C terminal RAM_06965 SM01043 Bacterial transcriptional activator domain RAM_06985 SM00382 ATPases associated with a variety of cellular activities RAM_06990 SM00382 ATPases associated with a variety of cellular activities RAM_07030 SM00421 helix_turn_helix, Lux Regulon RAM_07030 SM00448 cheY-homologous receiver domain RAM_07035 SM00387 Histidine kinase-like ATPases RAM_07040 SM00382 ATPases associated with a variety of cellular activities RAM_07060 SM00382 ATPases associated with a variety of cellular activities RAM_07120 SM00458 Ricin-type beta-trefoil RAM_07180 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_07225 SM00829 Enoylreductase RAM_07235 SM00829 Enoylreductase RAM_07240 SM00530 Helix-turn-helix XRE-family like proteins RAM_07250 SM00387 Histidine kinase-like ATPases RAM_07255 SM00960 Roadblock/LC7 domain RAM_07290 SM00822 RAM_07290 RAM_07380 SM00028 Tetratricopeptide repeats RAM_07385 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_07395 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_07405 SM00829 Enoylreductase RAM_07430 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_07435 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_07440 SM00421 helix_turn_helix, Lux Regulon RAM_07440 SM00448 cheY-homologous receiver domain RAM_07455 SM00458 Ricin-type beta-trefoil RAM_07470 SM00448 cheY-homologous receiver domain RAM_07475 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_07475 SM00387 Histidine kinase-like ATPases RAM_07495 SM00327 von Willebrand factor (vWF) type A domain RAM_07545 SM00060 Fibronectin type 3 domain RAM_07550 SM00421 helix_turn_helix, Lux Regulon RAM_07615 SM00062 Bacterial periplasmic substrate-binding proteins RAM_07625 SM00382 ATPases associated with a variety of cellular activities RAM_07650 SM00382 ATPases associated with a variety of cellular activities RAM_07680 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_07680 SM00895 RAM_07680 RAM_07690 SM00382 ATPases associated with a variety of cellular activities RAM_07700 SM00854 Bacterial capsule synthesis protein PGA_cap RAM_07710 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_07715 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_07780 SM00812 Alpha-L-fucosidase RAM_07795 SM00944 Pro-kumamolisin, activation domain RAM_07800 SM00387 Histidine kinase-like ATPases RAM_07830 SM00382 ATPases associated with a variety of cellular activities RAM_07850 SM00487 DEAD-like helicases superfamily RAM_07850 SM00490 helicase superfamily c-terminal domain RAM_07875 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_07875 SM00732 Likely ribonuclease with RNase H fold. RAM_07880 SM00636 RAM_07880 RAM_07905 SM00342 helix_turn_helix, arabinose operon control protein RAM_07975 SM00530 Helix-turn-helix XRE-family like proteins RAM_07995 SM00829 Enoylreductase RAM_08020 SM00382 ATPases associated with a variety of cellular activities RAM_08030 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_08065 SM00448 cheY-homologous receiver domain RAM_08065 SM00850 LytTr DNA-binding domain RAM_08070 SM00387 Histidine kinase-like ATPases RAM_08090 SM00382 ATPases associated with a variety of cellular activities RAM_08100 SM00354 helix_turn _helix lactose operon repressor RAM_08120 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_08175 SM00450 Rhodanese Homology Domain RAM_08190 SM00382 ATPases associated with a variety of cellular activities RAM_08230 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_08250 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_08260 SM00849 Metallo-beta-lactamase superfamily RAM_08315 SM00530 Helix-turn-helix XRE-family like proteins RAM_08400 SM00893 Electron transfer flavoprotein domain RAM_08405 SM00893 Electron transfer flavoprotein domain RAM_08415 SM00563 Phosphate acyltransferases RAM_08420 SM00829 Enoylreductase RAM_08425 SM00421 helix_turn_helix, Lux Regulon RAM_08460 SM00849 Metallo-beta-lactamase superfamily RAM_08480 SM00292 breast cancer carboxy-terminal domain RAM_08480 SM00532 Ligase N family RAM_08505 SM00845 GatB domain RAM_08585 SM00248 ankyrin repeats RAM_08615 SM01329 RAM_08615 RAM_08620 SM00917 LeuA allosteric (dimerisation) domain RAM_08640 SM00411 bacterial (prokaryotic) histone like domain RAM_08645 SM00028 Tetratricopeptide repeats RAM_08700 SM00411 bacterial (prokaryotic) histone like domain RAM_08725 SM01217 RAM_08725 RAM_08740 SM00849 Metallo-beta-lactamase superfamily RAM_08745 SM00346 helix_turn_helix isocitrate lyase regulation RAM_08760 SM00411 bacterial (prokaryotic) histone like domain RAM_08765 SM00028 Tetratricopeptide repeats RAM_08765 SM00862 Transcriptional regulatory protein, C terminal RAM_08765 SM01043 Bacterial transcriptional activator domain RAM_08770 SM00855 Phosphoglycerate mutase family RAM_08785 SM00563 Phosphate acyltransferases RAM_08800 SM00870 RAM_08800 RAM_08815 SM00900 RAM_08815 RAM_08825 SM00448 cheY-homologous receiver domain RAM_08825 SM00862 Transcriptional regulatory protein, C terminal RAM_08830 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_08830 SM00387 Histidine kinase-like ATPases RAM_08830 SM00388 His Kinase A (phosphoacceptor) domain RAM_08840 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_08880 SM00986 Uracil DNA glycosylase superfamily RAM_08880 SM00987 UreE urease accessory protein, C-terminal domain RAM_08895 SM01120 RAM_08895 RAM_08895 SM01121 RAM_08895 RAM_08900 SM00487 DEAD-like helicases superfamily RAM_08900 SM00490 helicase superfamily c-terminal domain RAM_08940 SM00878 Biotin carboxylase C-terminal domain RAM_08950 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_09065 SM00320 WD40 repeats RAM_09115 SM00358 Double-stranded RNA binding motif RAM_09115 SM00535 Ribonuclease III family RAM_09125 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_09125 SM01232 RAM_09125 RAM_09170 SM01230 RAM_09170 RAM_09220 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_09245 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_09245 SM00895 RAM_09245 RAM_09265 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_09280 SM00822 RAM_09280 RAM_09295 SM00422 helix_turn_helix, mercury resistance RAM_09315 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_09330 SM00382 ATPases associated with a variety of cellular activities RAM_09340 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_09340 SM00895 RAM_09340 RAM_09425 SM00882 Coenzyme A transferase RAM_09430 SM00882 Coenzyme A transferase RAM_09460 SM00346 helix_turn_helix isocitrate lyase regulation RAM_09470 SM00382 ATPases associated with a variety of cellular activities RAM_09480 SM00327 von Willebrand factor (vWF) type A domain RAM_09495 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_09500 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_09510 SM00267 diguanylate cyclase RAM_09530 SM00060 Fibronectin type 3 domain RAM_09565 SM00382 ATPases associated with a variety of cellular activities RAM_09585 SM00354 helix_turn _helix lactose operon repressor RAM_09620 SM00387 Histidine kinase-like ATPases RAM_09620 SM00388 His Kinase A (phosphoacceptor) domain RAM_09625 SM00448 cheY-homologous receiver domain RAM_09625 SM00862 Transcriptional regulatory protein, C terminal RAM_09655 SM00968 SMC proteins Flexible Hinge Domain RAM_09675 SM00382 ATPases associated with a variety of cellular activities RAM_09675 SM00962 SRP54-type protein, GTPase domain RAM_09675 SM00963 SRP54-type protein, helical bundle domain RAM_09690 SM00346 helix_turn_helix isocitrate lyase regulation RAM_09725 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_09735 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_09750 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_09755 SM00458 Ricin-type beta-trefoil RAM_09805 SM00881 CoA binding domain RAM_09850 SM00938 Nitrogen regulatory protein P-II RAM_09855 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_09875 SM00267 diguanylate cyclase RAM_09880 SM00822 RAM_09880 RAM_09895 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen RAM_09900 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_09905 SM00382 ATPases associated with a variety of cellular activities RAM_09910 SM00382 ATPases associated with a variety of cellular activities RAM_09910 SM00962 SRP54-type protein, GTPase domain RAM_09910 SM00963 SRP54-type protein, helical bundle domain RAM_09980 SM00382 ATPases associated with a variety of cellular activities RAM_10070 SM00861 Transketolase, pyrimidine binding domain RAM_10090 SM00758 RAM_10090 RAM_10125 SM00382 ATPases associated with a variety of cellular activities RAM_10135 SM00530 Helix-turn-helix XRE-family like proteins RAM_10180 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_10190 SM00422 helix_turn_helix, mercury resistance RAM_10225 SM00829 Enoylreductase RAM_10230 SM00530 Helix-turn-helix XRE-family like proteins RAM_10280 SM00822 RAM_10280 RAM_10300 SM00028 Tetratricopeptide repeats RAM_10300 SM00530 Helix-turn-helix XRE-family like proteins RAM_10300 SM00862 Transcriptional regulatory protein, C terminal RAM_10300 SM01043 Bacterial transcriptional activator domain RAM_10315 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_10340 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_10360 SM00342 helix_turn_helix, arabinose operon control protein RAM_10395 SM00382 ATPases associated with a variety of cellular activities RAM_10410 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_10410 SM00895 RAM_10410 RAM_10435 SM00020 Trypsin-like serine protease RAM_10450 SM00487 DEAD-like helicases superfamily RAM_10450 SM00490 helicase superfamily c-terminal domain RAM_10455 SM00090 RIO-like kinase RAM_10485 SM00849 Metallo-beta-lactamase superfamily RAM_10595 SM00421 helix_turn_helix, Lux Regulon RAM_10595 SM00448 cheY-homologous receiver domain RAM_10625 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RAM_10625 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RAM_10670 SM00825 Beta-ketoacyl synthase RAM_10685 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_10700 SM00382 ATPases associated with a variety of cellular activities RAM_10730 SM00822 RAM_10730 RAM_10755 SM00857 Resolvase, N terminal domain RAM_10760 SM00857 Resolvase, N terminal domain RAM_10830 SM00020 Trypsin-like serine protease RAM_10855 SM00530 Helix-turn-helix XRE-family like proteins RAM_10910 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_10935 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_10935 SM00895 RAM_10935 RAM_10945 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_10965 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_10965 SM00895 RAM_10965 RAM_10970 SM00481 DNA polymerase alpha chain like domain RAM_11000 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_11030 SM00014 Acid phosphatase homologues RAM_11065 SM00860 SMI1 / KNR4 family RAM_11120 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_11120 SM00866 RAM_11120 RAM_11180 SM00342 helix_turn_helix, arabinose operon control protein RAM_11235 SM00465 GIY-YIG type nucleases (URI domain) RAM_11235 SM00479 RAM_11235 RAM_11280 SM00947 Carbonic anhydrase RAM_11285 SM00947 Carbonic anhydrase RAM_11295 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_11295 SM00876 Biotin and Thiamin Synthesis associated domain RAM_11315 SM00464 Found in ATP-dependent protease La (LON) RAM_11385 SM00020 Trypsin-like serine protease RAM_11400 SM00382 ATPases associated with a variety of cellular activities RAM_11450 SM00421 helix_turn_helix, Lux Regulon RAM_11450 SM00448 cheY-homologous receiver domain RAM_11455 SM00421 helix_turn_helix, Lux Regulon RAM_11455 SM00448 cheY-homologous receiver domain RAM_11515 SM00422 helix_turn_helix, mercury resistance RAM_11525 SM00861 Transketolase, pyrimidine binding domain RAM_11690 SM00422 helix_turn_helix, mercury resistance RAM_11700 SM00644 RAM_11700 RAM_11700 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. RAM_11710 SM01230 RAM_11710 RAM_11735 SM00822 RAM_11735 RAM_11770 SM00822 RAM_11770 RAM_11775 SM00530 Helix-turn-helix XRE-family like proteins RAM_11790 SM00244 prohibitin homologues RAM_11800 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_11800 SM00740 RAM_11800 RAM_11890 SM00382 ATPases associated with a variety of cellular activities RAM_11890 SM00487 DEAD-like helicases superfamily RAM_11890 SM00490 helicase superfamily c-terminal domain RAM_11895 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_11895 SM01134 RAM_11895 RAM_11920 SM00382 ATPases associated with a variety of cellular activities RAM_11985 SM00530 Helix-turn-helix XRE-family like proteins RAM_12015 SM00062 Bacterial periplasmic substrate-binding proteins RAM_12020 SM00382 ATPases associated with a variety of cellular activities RAM_12025 SM00448 cheY-homologous receiver domain RAM_12025 SM00862 Transcriptional regulatory protein, C terminal RAM_12030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_12030 SM00387 Histidine kinase-like ATPases RAM_12030 SM00388 His Kinase A (phosphoacceptor) domain RAM_12055 SM00014 Acid phosphatase homologues RAM_12060 SM00915 Jacalin-like lectin domain RAM_12065 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_12070 SM00458 Ricin-type beta-trefoil RAM_12105 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_12225 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_12235 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_12245 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_12260 SM00421 helix_turn_helix, Lux Regulon RAM_12260 SM00448 cheY-homologous receiver domain RAM_12290 SM00529 Helix-turn-helix diphteria tox regulatory element RAM_12295 SM00450 Rhodanese Homology Domain RAM_12305 SM00881 CoA binding domain RAM_12330 SM00822 RAM_12330 RAM_12410 SM00354 helix_turn _helix lactose operon repressor RAM_12495 SM00563 Phosphate acyltransferases RAM_12520 SM00421 helix_turn_helix, Lux Regulon RAM_12540 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_12545 SM00636 RAM_12545 RAM_12565 SM00530 Helix-turn-helix XRE-family like proteins RAM_12580 SM00421 helix_turn_helix, Lux Regulon RAM_12665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_12665 SM00387 Histidine kinase-like ATPases RAM_12670 SM00960 Roadblock/LC7 domain RAM_12695 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_12725 SM00487 DEAD-like helicases superfamily RAM_12725 SM00490 helicase superfamily c-terminal domain RAM_12785 SM00904 Riboflavin kinase RAM_12835 SM00903 Flavin reductase like domain RAM_12875 SM00342 helix_turn_helix, arabinose operon control protein RAM_12935 SM00344 helix_turn_helix ASNC type RAM_12975 SM00460 Transglutaminase/protease-like homologues RAM_13015 SM00020 Trypsin-like serine protease RAM_13025 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_13025 SM00866 RAM_13025 RAM_13115 SM00487 DEAD-like helicases superfamily RAM_13125 SM00382 ATPases associated with a variety of cellular activities RAM_13150 SM01230 RAM_13150 RAM_13170 SM00642 Alpha-amylase domain RAM_13175 SM00642 Alpha-amylase domain RAM_13180 SM00642 Alpha-amylase domain RAM_13185 SM00642 Alpha-amylase domain RAM_13190 SM00642 Alpha-amylase domain RAM_13195 SM00642 Alpha-amylase domain RAM_13205 SM00642 Alpha-amylase domain RAM_13300 SM00861 Transketolase, pyrimidine binding domain RAM_13305 SM00354 helix_turn _helix lactose operon repressor RAM_13340 SM00448 cheY-homologous receiver domain RAM_13340 SM00862 Transcriptional regulatory protein, C terminal RAM_13345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_13345 SM00387 Histidine kinase-like ATPases RAM_13345 SM00388 His Kinase A (phosphoacceptor) domain RAM_13355 SM00481 DNA polymerase alpha chain like domain RAM_13390 SM00796 Allophanate hydrolase subunit 1 RAM_13390 SM00797 Allophanate hydrolase subunit 2 RAM_13390 SM00878 Biotin carboxylase C-terminal domain RAM_13420 SM00341 Helicase and RNase D C-terminal RAM_13420 SM00474 3'-5' exonuclease RAM_13425 SM00421 helix_turn_helix, Lux Regulon RAM_13425 SM00448 cheY-homologous receiver domain RAM_13485 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_13510 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_13645 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_13700 SM01230 RAM_13700 RAM_13710 SM00862 Transcriptional regulatory protein, C terminal RAM_13710 SM01043 Bacterial transcriptional activator domain RAM_13725 SM00305 Hint (Hedgehog/Intein) domain C-terminal region RAM_13725 SM00306 Hint (Hedgehog/Intein) domain N-terminal region RAM_13770 SM00382 ATPases associated with a variety of cellular activities RAM_13795 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RAM_13800 SM00732 Likely ribonuclease with RNase H fold. RAM_13835 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_13860 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_13860 SM00866 RAM_13860 RAM_13935 SM00841 Elongation factor P, C-terminal RAM_13935 SM01185 RAM_13935 RAM_13950 SM00530 Helix-turn-helix XRE-family like proteins RAM_13975 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain RAM_13990 SM00851 MGS-like domain RAM_13990 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RAM_13995 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family RAM_14005 SM00072 Guanylate kinase homologues. RAM_14010 SM01409 RAM_14010 RAM_14070 SM00098 Alkaline phosphatase homologues RAM_14075 SM00421 helix_turn_helix, Lux Regulon RAM_14075 SM00448 cheY-homologous receiver domain RAM_14115 SM00020 Trypsin-like serine protease RAM_14120 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RAM_14120 SM00465 GIY-YIG type nucleases (URI domain) RAM_14165 SM00060 Fibronectin type 3 domain RAM_14165 SM00606 Cellulose Binding Domain Type IV RAM_14205 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_14220 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RAM_14275 SM00861 Transketolase, pyrimidine binding domain RAM_14320 SM00829 Enoylreductase RAM_14365 SM00382 ATPases associated with a variety of cellular activities RAM_14390 SM00382 ATPases associated with a variety of cellular activities RAM_14440 SM00421 helix_turn_helix, Lux Regulon RAM_14440 SM00448 cheY-homologous receiver domain RAM_14510 SM00052 Putative diguanylate phosphodiesterase RAM_14510 SM00267 diguanylate cyclase RAM_14515 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_14530 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_14545 SM00382 ATPases associated with a variety of cellular activities RAM_14565 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_14570 SM00382 ATPases associated with a variety of cellular activities RAM_14610 SM00052 Putative diguanylate phosphodiesterase RAM_14610 SM00091 PAS domain RAM_14610 SM00267 diguanylate cyclase RAM_14680 SM00878 Biotin carboxylase C-terminal domain RAM_14720 SM00267 diguanylate cyclase RAM_14765 SM00458 Ricin-type beta-trefoil RAM_14800 SM00422 helix_turn_helix, mercury resistance RAM_14815 SM00320 WD40 repeats RAM_14840 SM00344 helix_turn_helix ASNC type RAM_14885 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_14905 SM00421 helix_turn_helix, Lux Regulon RAM_14905 SM00448 cheY-homologous receiver domain RAM_14985 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_15025 SM00864 Tubulin/FtsZ family, GTPase domain RAM_15025 SM00865 Tubulin/FtsZ family, C-terminal domain RAM_15060 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_15080 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_15105 SM00363 S4 RNA-binding domain RAM_15155 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_15170 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_15215 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_15255 SM00382 ATPases associated with a variety of cellular activities RAM_15275 SM00341 Helicase and RNase D C-terminal RAM_15275 SM00487 DEAD-like helicases superfamily RAM_15275 SM00490 helicase superfamily c-terminal domain RAM_15275 SM00956 RAM_15275 RAM_15285 SM00822 RAM_15285 RAM_15305 SM00422 helix_turn_helix, mercury resistance RAM_15320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_15320 SM00387 Histidine kinase-like ATPases RAM_15320 SM00388 His Kinase A (phosphoacceptor) domain RAM_15325 SM00448 cheY-homologous receiver domain RAM_15325 SM00862 Transcriptional regulatory protein, C terminal RAM_15330 SM00014 Acid phosphatase homologues RAM_15350 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_15350 SM00895 RAM_15350 RAM_15410 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_15415 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_15420 SM00829 Enoylreductase RAM_15460 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_15465 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_15495 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_15495 SM00866 RAM_15495 RAM_15510 SM00331 Sigma factor PP2C-like phosphatases RAM_15515 SM00331 Sigma factor PP2C-like phosphatases RAM_15520 SM00387 Histidine kinase-like ATPases RAM_15535 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_15540 SM00331 Sigma factor PP2C-like phosphatases RAM_15555 SM00822 RAM_15555 RAM_15565 SM00642 Alpha-amylase domain RAM_15615 SM00354 helix_turn _helix lactose operon repressor RAM_15655 SM00342 helix_turn_helix, arabinose operon control protein RAM_15680 SM01001 AIR carboxylase RAM_15700 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_15705 SM00822 RAM_15705 RAM_15715 SM00382 ATPases associated with a variety of cellular activities RAM_15730 SM00812 Alpha-L-fucosidase RAM_15735 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_15735 SM00895 RAM_15735 RAM_15750 SM00354 helix_turn _helix lactose operon repressor RAM_15775 SM00823 Phosphopantetheine attachment site RAM_15775 SM01294 RAM_15775 RAM_15780 SM00923 MbtH-like protein RAM_15790 SM00823 Phosphopantetheine attachment site RAM_15790 SM01294 RAM_15790 RAM_15825 SM00829 Enoylreductase RAM_15830 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_15860 SM00422 helix_turn_helix, mercury resistance RAM_15890 SM00829 Enoylreductase RAM_15980 SM00822 RAM_15980 RAM_15985 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_15990 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_15990 SM00895 RAM_15990 RAM_16010 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_16015 SM00862 Transcriptional regulatory protein, C terminal RAM_16015 SM01043 Bacterial transcriptional activator domain RAM_16025 SM00387 Histidine kinase-like ATPases RAM_16030 SM00421 helix_turn_helix, Lux Regulon RAM_16030 SM00448 cheY-homologous receiver domain RAM_16060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_16060 SM00387 Histidine kinase-like ATPases RAM_16060 SM00388 His Kinase A (phosphoacceptor) domain RAM_16065 SM00448 cheY-homologous receiver domain RAM_16065 SM00862 Transcriptional regulatory protein, C terminal RAM_16080 SM00382 ATPases associated with a variety of cellular activities RAM_16110 SM00382 ATPases associated with a variety of cellular activities RAM_16125 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RAM_16125 SM00292 breast cancer carboxy-terminal domain RAM_16125 SM00532 Ligase N family RAM_16145 SM00960 Roadblock/LC7 domain RAM_16215 SM00642 Alpha-amylase domain RAM_16250 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_16260 SM00354 helix_turn _helix lactose operon repressor RAM_16265 SM00637 RAM_16265 RAM_16270 SM00637 RAM_16270 RAM_16295 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_16325 SM00530 Helix-turn-helix XRE-family like proteins RAM_16380 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_16405 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_16430 SM00530 Helix-turn-helix XRE-family like proteins RAM_16450 SM01130 RAM_16450 RAM_16465 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_16475 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_16640 SM00829 Enoylreductase RAM_16690 SM00014 Acid phosphatase homologues RAM_16710 SM00637 RAM_16710 RAM_16715 SM00606 Cellulose Binding Domain Type IV RAM_16720 SM00633 Glycosyl hydrolase family 10 RAM_16720 SM00637 RAM_16720 RAM_16725 SM00637 RAM_16725 RAM_16735 SM00458 Ricin-type beta-trefoil RAM_16740 SM00812 Alpha-L-fucosidase RAM_16745 SM00458 Ricin-type beta-trefoil RAM_16750 SM00458 Ricin-type beta-trefoil RAM_16750 SM00710 Parallel beta-helix repeats RAM_16760 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_16760 SM00895 RAM_16760 RAM_16765 SM00458 Ricin-type beta-trefoil RAM_16770 SM00354 helix_turn _helix lactose operon repressor RAM_16775 SM00458 Ricin-type beta-trefoil RAM_16780 SM00458 Ricin-type beta-trefoil RAM_16810 SM00822 RAM_16810 RAM_16820 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_16830 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_16830 SM00387 Histidine kinase-like ATPases RAM_16830 SM00960 Roadblock/LC7 domain RAM_16850 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_16850 SM00866 RAM_16850 RAM_16875 SM00495 Chitin-binding domain type 3 RAM_16890 SM00226 Low molecular weight phosphatase family RAM_16890 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_16900 SM00421 helix_turn_helix, Lux Regulon RAM_16915 SM00267 diguanylate cyclase RAM_16920 SM00354 helix_turn _helix lactose operon repressor RAM_16960 SM00020 Trypsin-like serine protease RAM_16980 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_17050 SM00954 Region found in RelA / SpoT proteins RAM_17070 SM00631 RAM_17070 RAM_17080 SM00271 DnaJ molecular chaperone homology domain RAM_17095 SM00062 Bacterial periplasmic substrate-binding proteins RAM_17125 SM00822 RAM_17125 RAM_17125 SM00823 Phosphopantetheine attachment site RAM_17125 SM00825 Beta-ketoacyl synthase RAM_17125 SM00826 RAM_17125 RAM_17125 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_17170 SM00822 RAM_17170 RAM_17175 SM00822 RAM_17175 RAM_17185 SM00882 Coenzyme A transferase RAM_17190 SM00882 Coenzyme A transferase RAM_17255 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_17255 SM00895 RAM_17255 RAM_17260 SM00477 DNA/RNA non-specific endonuclease RAM_17260 SM00892 DNA/RNA non-specific endonuclease RAM_17265 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_17285 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain RAM_17285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_17320 SM00458 Ricin-type beta-trefoil RAM_17325 SM00354 helix_turn _helix lactose operon repressor RAM_17350 SM00458 Ricin-type beta-trefoil RAM_17415 SM00354 helix_turn _helix lactose operon repressor RAM_17470 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_17490 SM00849 Metallo-beta-lactamase superfamily RAM_17495 SM00530 Helix-turn-helix XRE-family like proteins RAM_17545 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins RAM_17595 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_17620 SM00382 ATPases associated with a variety of cellular activities RAM_17625 SM00382 ATPases associated with a variety of cellular activities RAM_17655 SM00822 RAM_17655 RAM_17680 SM00530 Helix-turn-helix XRE-family like proteins RAM_17685 SM00829 Enoylreductase RAM_17690 SM00606 Cellulose Binding Domain Type IV RAM_17715 SM01007 Class II Aldolase and Adducin N-terminal domain RAM_17745 SM00062 Bacterial periplasmic substrate-binding proteins RAM_17750 SM00382 ATPases associated with a variety of cellular activities RAM_17750 SM00421 helix_turn_helix, Lux Regulon RAM_17780 SM00822 RAM_17780 RAM_17785 SM00823 Phosphopantetheine attachment site RAM_17790 SM00825 Beta-ketoacyl synthase RAM_17800 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_17800 SM00895 RAM_17800 RAM_17820 SM00829 Enoylreductase RAM_17835 SM00421 helix_turn_helix, Lux Regulon RAM_17925 SM00487 DEAD-like helicases superfamily RAM_17925 SM00490 helicase superfamily c-terminal domain RAM_17935 SM00382 ATPases associated with a variety of cellular activities RAM_18000 SM00448 cheY-homologous receiver domain RAM_18000 SM00862 Transcriptional regulatory protein, C terminal RAM_18005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_18005 SM00387 Histidine kinase-like ATPases RAM_18005 SM00388 His Kinase A (phosphoacceptor) domain RAM_18020 SM00382 ATPases associated with a variety of cellular activities RAM_18030 SM00829 Enoylreductase RAM_18055 SM00387 Histidine kinase-like ATPases RAM_18060 SM00421 helix_turn_helix, Lux Regulon RAM_18060 SM00448 cheY-homologous receiver domain RAM_18085 SM00448 cheY-homologous receiver domain RAM_18095 SM00530 Helix-turn-helix XRE-family like proteins RAM_18115 SM00342 helix_turn_helix, arabinose operon control protein RAM_18135 SM00530 Helix-turn-helix XRE-family like proteins RAM_18190 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_18195 SM00458 Ricin-type beta-trefoil RAM_18205 SM00448 cheY-homologous receiver domain RAM_18205 SM00862 Transcriptional regulatory protein, C terminal RAM_18210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_18210 SM00387 Histidine kinase-like ATPases RAM_18210 SM00388 His Kinase A (phosphoacceptor) domain RAM_18255 SM00138 Methyltransferase, chemotaxis proteins RAM_18285 SM00829 Enoylreductase RAM_18295 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RAM_18295 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RAM_18300 SM00947 Carbonic anhydrase RAM_18350 SM00822 RAM_18350 RAM_18355 SM00320 WD40 repeats RAM_18370 SM00422 helix_turn_helix, mercury resistance RAM_18400 SM00641 Glycosyl hydrolases family 25 RAM_18420 SM00028 Tetratricopeptide repeats RAM_18420 SM00862 Transcriptional regulatory protein, C terminal RAM_18420 SM01043 Bacterial transcriptional activator domain RAM_18425 SM00421 helix_turn_helix, Lux Regulon RAM_18475 SM00382 ATPases associated with a variety of cellular activities RAM_18520 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_18525 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_18540 SM00776 RAM_18540 RAM_18660 SM00829 Enoylreductase RAM_18735 SM00458 Ricin-type beta-trefoil RAM_18740 SM00823 Phosphopantetheine attachment site RAM_18740 SM00824 Thioesterase RAM_18740 SM00825 Beta-ketoacyl synthase RAM_18740 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_18750 SM00823 Phosphopantetheine attachment site RAM_18780 SM00900 RAM_18780 RAM_18790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_18790 SM00387 Histidine kinase-like ATPases RAM_18790 SM00388 His Kinase A (phosphoacceptor) domain RAM_18795 SM00448 cheY-homologous receiver domain RAM_18795 SM00862 Transcriptional regulatory protein, C terminal RAM_18805 SM00421 helix_turn_helix, Lux Regulon RAM_18805 SM00448 cheY-homologous receiver domain RAM_18870 SM00344 helix_turn_helix ASNC type RAM_18880 SM00829 Enoylreductase RAM_18895 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_18905 SM00060 Fibronectin type 3 domain RAM_18905 SM00458 Ricin-type beta-trefoil RAM_18935 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_18960 SM00829 Enoylreductase RAM_18970 SM00530 Helix-turn-helix XRE-family like proteins RAM_18985 SM00331 Sigma factor PP2C-like phosphatases RAM_18985 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RAM_19015 SM00641 Glycosyl hydrolases family 25 RAM_19060 SM00382 ATPases associated with a variety of cellular activities RAM_19065 SM00382 ATPases associated with a variety of cellular activities RAM_19080 SM00458 Ricin-type beta-trefoil RAM_19085 SM00458 Ricin-type beta-trefoil RAM_19105 SM00342 helix_turn_helix, arabinose operon control protein RAM_19155 SM00205 Thaumatin family RAM_19175 SM00448 cheY-homologous receiver domain RAM_19175 SM00862 Transcriptional regulatory protein, C terminal RAM_19180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_19180 SM00387 Histidine kinase-like ATPases RAM_19180 SM00388 His Kinase A (phosphoacceptor) domain RAM_19215 SM00421 helix_turn_helix, Lux Regulon RAM_19230 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_19245 SM00530 Helix-turn-helix XRE-family like proteins RAM_19345 SM00560 LamG-like jellyroll fold domain RAM_19360 SM00530 Helix-turn-helix XRE-family like proteins RAM_19380 SM00862 Transcriptional regulatory protein, C terminal RAM_19380 SM01043 Bacterial transcriptional activator domain RAM_19405 SM00829 Enoylreductase RAM_19425 SM00829 Enoylreductase RAM_19445 SM00822 RAM_19445 RAM_19480 SM00382 ATPases associated with a variety of cellular activities RAM_19485 SM00382 ATPases associated with a variety of cellular activities RAM_19530 SM00507 HNH nucleases RAM_19550 SM00849 Metallo-beta-lactamase superfamily RAM_19565 SM00881 CoA binding domain RAM_19655 SM00822 RAM_19655 RAM_19665 SM00822 RAM_19665 RAM_19710 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_19710 SM00895 RAM_19710 RAM_19720 SM00342 helix_turn_helix, arabinose operon control protein RAM_19750 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_19750 SM00895 RAM_19750 RAM_19755 SM00822 RAM_19755 RAM_19805 SM00028 Tetratricopeptide repeats RAM_19880 SM00421 helix_turn_helix, Lux Regulon RAM_19910 SM00421 helix_turn_helix, Lux Regulon RAM_19925 SM00060 Fibronectin type 3 domain RAM_19960 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_19960 SM01134 RAM_19960 RAM_19995 SM00458 Ricin-type beta-trefoil RAM_20005 SM00822 RAM_20005 RAM_20005 SM00823 Phosphopantetheine attachment site RAM_20005 SM00825 Beta-ketoacyl synthase RAM_20005 SM00826 RAM_20005 RAM_20005 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_20005 SM01294 RAM_20005 RAM_20020 SM00829 Enoylreductase RAM_20035 SM00060 Fibronectin type 3 domain RAM_20035 SM01067 Cellulose binding domain RAM_20040 SM00458 Ricin-type beta-trefoil RAM_20045 SM00458 Ricin-type beta-trefoil RAM_20070 SM00862 Transcriptional regulatory protein, C terminal RAM_20070 SM01043 Bacterial transcriptional activator domain RAM_20080 SM00382 ATPases associated with a variety of cellular activities RAM_20105 SM00422 helix_turn_helix, mercury resistance RAM_20135 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_20155 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_20155 SM00895 RAM_20155 RAM_20200 SM00823 Phosphopantetheine attachment site RAM_20200 SM00824 Thioesterase RAM_20235 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_20290 SM00829 Enoylreductase RAM_20310 SM00458 Ricin-type beta-trefoil RAM_20315 SM00458 Ricin-type beta-trefoil RAM_20350 SM00637 RAM_20350 RAM_20355 SM00458 Ricin-type beta-trefoil RAM_20360 SM00458 Ricin-type beta-trefoil RAM_20365 SM00458 Ricin-type beta-trefoil RAM_20365 SM00633 Glycosyl hydrolase family 10 RAM_20370 SM00829 Enoylreductase RAM_20385 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_20400 SM01217 RAM_20400 RAM_20415 SM00633 Glycosyl hydrolase family 10 RAM_20415 SM00637 RAM_20415 RAM_20430 SM00825 Beta-ketoacyl synthase RAM_20460 SM00862 Transcriptional regulatory protein, C terminal RAM_20460 SM01043 Bacterial transcriptional activator domain RAM_20490 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_20495 SM00028 Tetratricopeptide repeats RAM_20495 SM00530 Helix-turn-helix XRE-family like proteins RAM_20495 SM00862 Transcriptional regulatory protein, C terminal RAM_20495 SM01043 Bacterial transcriptional activator domain RAM_20515 SM00421 helix_turn_helix, Lux Regulon RAM_20515 SM00448 cheY-homologous receiver domain RAM_20525 SM00382 ATPases associated with a variety of cellular activities RAM_20540 SM00823 Phosphopantetheine attachment site RAM_20560 SM00823 Phosphopantetheine attachment site RAM_20560 SM00824 Thioesterase RAM_20570 SM00923 MbtH-like protein RAM_20575 SM00382 ATPases associated with a variety of cellular activities RAM_20600 SM00822 RAM_20600 RAM_20610 SM00825 Beta-ketoacyl synthase RAM_20620 SM00862 Transcriptional regulatory protein, C terminal RAM_20620 SM01043 Bacterial transcriptional activator domain RAM_20650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_20650 SM00387 Histidine kinase-like ATPases RAM_20650 SM00388 His Kinase A (phosphoacceptor) domain RAM_20655 SM00448 cheY-homologous receiver domain RAM_20655 SM00862 Transcriptional regulatory protein, C terminal RAM_20715 SM00823 Phosphopantetheine attachment site RAM_20715 SM01294 RAM_20715 RAM_20720 SM00823 Phosphopantetheine attachment site RAM_20720 SM00825 Beta-ketoacyl synthase RAM_20730 SM00237 Domains in Na-Ca exchangers and integrin-beta4 RAM_20800 SM00422 helix_turn_helix, mercury resistance RAM_20805 SM00422 helix_turn_helix, mercury resistance RAM_20835 SM00354 helix_turn _helix lactose operon repressor RAM_20855 SM00637 RAM_20855 RAM_20875 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_20880 SM00637 RAM_20880 RAM_20890 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_20890 SM00091 PAS domain RAM_20890 SM00331 Sigma factor PP2C-like phosphatases RAM_20950 SM00155 Phospholipase D. Active site motifs. RAM_20975 SM00346 helix_turn_helix isocitrate lyase regulation RAM_20990 SM00382 ATPases associated with a variety of cellular activities RAM_21000 SM00822 RAM_21000 RAM_21055 SM00091 PAS domain RAM_21055 SM00138 Methyltransferase, chemotaxis proteins RAM_21155 SM00833 Cobalamin synthesis protein cobW C-terminal domain RAM_21210 SM00631 RAM_21210 RAM_21220 SM00878 Biotin carboxylase C-terminal domain RAM_21240 SM00481 DNA polymerase alpha chain like domain RAM_21255 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_21345 SM00487 DEAD-like helicases superfamily RAM_21345 SM00490 helicase superfamily c-terminal domain RAM_21350 SM01012 RAM_21350 RAM_21365 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_21365 SM01012 RAM_21365 RAM_21370 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_21370 SM01012 RAM_21370 RAM_21460 SM00530 Helix-turn-helix XRE-family like proteins RAM_21470 SM00530 Helix-turn-helix XRE-family like proteins RAM_21480 SM00710 Parallel beta-helix repeats RAM_21490 SM00859 Semialdehyde dehydrogenase, NAD binding domain RAM_21575 SM00344 helix_turn_helix ASNC type RAM_21595 SM00421 helix_turn_helix, Lux Regulon RAM_21595 SM00448 cheY-homologous receiver domain RAM_21615 SM00637 RAM_21615 RAM_21620 SM00507 HNH nucleases RAM_21625 SM00387 Histidine kinase-like ATPases RAM_21680 SM00422 helix_turn_helix, mercury resistance RAM_21740 SM00984 UDP binding domain RAM_21750 SM00822 RAM_21750 RAM_21815 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_21880 SM00704 CDGSH-type zinc finger. Function unknown. RAM_21885 SM01236 RAM_21885 RAM_21935 SM00382 ATPases associated with a variety of cellular activities RAM_21965 SM00028 Tetratricopeptide repeats RAM_21965 SM00862 Transcriptional regulatory protein, C terminal RAM_21965 SM01043 Bacterial transcriptional activator domain RAM_21995 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_22045 SM00829 Enoylreductase RAM_22060 SM00382 ATPases associated with a variety of cellular activities RAM_22060 SM00530 Helix-turn-helix XRE-family like proteins RAM_22085 SM00822 RAM_22085 RAM_22095 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_22100 SM00867 YceI-like domain RAM_22135 SM00354 helix_turn _helix lactose operon repressor RAM_22145 SM00606 Cellulose Binding Domain Type IV RAM_22145 SM01217 RAM_22145 RAM_22165 SM00052 Putative diguanylate phosphodiesterase RAM_22165 SM00091 PAS domain RAM_22165 SM00267 diguanylate cyclase RAM_22185 SM00240 Forkhead associated domain RAM_22235 SM00028 Tetratricopeptide repeats RAM_22295 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_22300 SM00421 helix_turn_helix, Lux Regulon RAM_22300 SM00448 cheY-homologous receiver domain RAM_22340 SM00354 helix_turn _helix lactose operon repressor RAM_22345 SM00776 RAM_22345 RAM_22345 SM01029 Beta-galactosidase, domain 2 RAM_22370 SM00637 RAM_22370 RAM_22370 SM00710 Parallel beta-helix repeats RAM_22390 SM00354 helix_turn _helix lactose operon repressor RAM_22400 SM00382 ATPases associated with a variety of cellular activities RAM_22415 SM00560 LamG-like jellyroll fold domain RAM_22415 SM00813 Alpha-L-arabinofuranosidase C-terminus RAM_22425 SM01007 Class II Aldolase and Adducin N-terminal domain RAM_22440 SM00382 ATPases associated with a variety of cellular activities RAM_22470 SM00346 helix_turn_helix isocitrate lyase regulation RAM_22500 SM00829 Enoylreductase RAM_22510 SM00028 Tetratricopeptide repeats RAM_22510 SM00382 ATPases associated with a variety of cellular activities RAM_22510 SM00862 Transcriptional regulatory protein, C terminal RAM_22510 SM01043 Bacterial transcriptional activator domain RAM_22530 SM00344 helix_turn_helix ASNC type RAM_22545 SM00354 helix_turn _helix lactose operon repressor RAM_22590 SM00656 RAM_22590 RAM_22610 SM01029 Beta-galactosidase, domain 2 RAM_22620 SM00862 Transcriptional regulatory protein, C terminal RAM_22620 SM01043 Bacterial transcriptional activator domain RAM_22670 SM00382 ATPases associated with a variety of cellular activities RAM_22715 SM00829 Enoylreductase RAM_22750 SM00422 helix_turn_helix, mercury resistance RAM_22775 SM00838 Elongation factor G C-terminus RAM_22775 SM00889 Elongation factor G, domain IV RAM_22815 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_22825 SM00823 Phosphopantetheine attachment site RAM_22825 SM00824 Thioesterase RAM_22825 SM00825 Beta-ketoacyl synthase RAM_22825 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_22845 SM00822 RAM_22845 RAM_22880 SM00822 RAM_22880 RAM_22900 SM00028 Tetratricopeptide repeats RAM_22925 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_22925 SM01134 RAM_22925 RAM_22950 SM01217 RAM_22950 RAM_22955 SM00354 helix_turn _helix lactose operon repressor RAM_22980 SM00354 helix_turn _helix lactose operon repressor RAM_22985 SM00633 Glycosyl hydrolase family 10 RAM_23000 SM00357 Cold shock protein domain RAM_23005 SM00828 Methyltransferase in polyketide synthase (PKS) enzymes. RAM_23045 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_23045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_23045 SM00387 Histidine kinase-like ATPases RAM_23045 SM00388 His Kinase A (phosphoacceptor) domain RAM_23045 SM00448 cheY-homologous receiver domain RAM_23050 SM00331 Sigma factor PP2C-like phosphatases RAM_23050 SM01012 RAM_23050 RAM_23095 SM00736 Dystroglycan-type cadherin-like domains. RAM_23110 SM00354 helix_turn _helix lactose operon repressor RAM_23115 SM00382 ATPases associated with a variety of cellular activities RAM_23145 SM01007 Class II Aldolase and Adducin N-terminal domain RAM_23160 SM00421 helix_turn_helix, Lux Regulon RAM_23160 SM00448 cheY-homologous receiver domain RAM_23175 SM00354 helix_turn _helix lactose operon repressor RAM_23205 SM00342 helix_turn_helix, arabinose operon control protein RAM_23265 SM00881 CoA binding domain RAM_23285 SM00881 CoA binding domain RAM_23295 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_23295 SM00895 RAM_23295 RAM_23310 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RAM_23315 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_23335 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_23345 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_23405 SM01038 Beta galactosidase small chain RAM_23410 SM00354 helix_turn _helix lactose operon repressor RAM_23440 SM00822 RAM_23440 RAM_23440 SM00825 Beta-ketoacyl synthase RAM_23440 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_23445 SM00825 Beta-ketoacyl synthase RAM_23445 SM00826 RAM_23445 RAM_23445 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_23465 SM00822 RAM_23465 RAM_23500 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain RAM_23500 SM00710 Parallel beta-helix repeats RAM_23545 SM00354 helix_turn _helix lactose operon repressor RAM_23570 SM00422 helix_turn_helix, mercury resistance RAM_23610 SM00855 Phosphoglycerate mutase family RAM_23630 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_23675 SM00342 helix_turn_helix, arabinose operon control protein RAM_23680 SM00829 Enoylreductase RAM_23715 SM00382 ATPases associated with a variety of cellular activities RAM_23765 SM00244 prohibitin homologues RAM_23770 SM00244 prohibitin homologues RAM_23785 SM00198 SCP / Tpx-1 / Ag5 / PR-1 / Sc7 family of extracellular domains. RAM_23815 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_23880 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_23905 SM00342 helix_turn_helix, arabinose operon control protein RAM_23955 SM00382 ATPases associated with a variety of cellular activities RAM_23965 SM00487 DEAD-like helicases superfamily RAM_23965 SM00490 helicase superfamily c-terminal domain RAM_24010 SM00530 Helix-turn-helix XRE-family like proteins RAM_24025 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_24075 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_24075 SM01134 RAM_24075 RAM_24120 SM00342 helix_turn_helix, arabinose operon control protein RAM_24145 SM00028 Tetratricopeptide repeats RAM_24145 SM00862 Transcriptional regulatory protein, C terminal RAM_24145 SM01043 Bacterial transcriptional activator domain RAM_24155 SM01260 RAM_24155 RAM_24165 SM01043 Bacterial transcriptional activator domain RAM_24220 SM00530 Helix-turn-helix XRE-family like proteins RAM_24230 SM01209 RAM_24230 RAM_24260 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_24265 SM00823 Phosphopantetheine attachment site RAM_24270 SM00923 MbtH-like protein RAM_24275 SM00823 Phosphopantetheine attachment site RAM_24280 SM00823 Phosphopantetheine attachment site RAM_24310 SM00862 Transcriptional regulatory protein, C terminal RAM_24310 SM01043 Bacterial transcriptional activator domain RAM_24325 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_24365 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_24370 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_24370 SM00895 RAM_24370 RAM_24400 SM00923 MbtH-like protein RAM_24405 SM00823 Phosphopantetheine attachment site RAM_24435 SM00823 Phosphopantetheine attachment site RAM_24435 SM00824 Thioesterase RAM_24455 SM00823 Phosphopantetheine attachment site RAM_24460 SM01043 Bacterial transcriptional activator domain RAM_24470 SM00028 Tetratricopeptide repeats RAM_24470 SM00382 ATPases associated with a variety of cellular activities RAM_24470 SM00862 Transcriptional regulatory protein, C terminal RAM_24470 SM01043 Bacterial transcriptional activator domain RAM_24480 SM00422 helix_turn_helix, mercury resistance RAM_24480 SM00567 E-Z type HEAT repeats RAM_24520 SM00458 Ricin-type beta-trefoil RAM_24540 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_24550 SM00849 Metallo-beta-lactamase superfamily RAM_24565 SM00421 helix_turn_helix, Lux Regulon RAM_24565 SM00448 cheY-homologous receiver domain RAM_24570 SM00421 helix_turn_helix, Lux Regulon RAM_24580 SM00327 von Willebrand factor (vWF) type A domain RAM_24665 SM00382 ATPases associated with a variety of cellular activities RAM_24680 SM00710 Parallel beta-helix repeats RAM_24695 SM00346 helix_turn_helix isocitrate lyase regulation RAM_24695 SM00419 helix_turn_helix, cAMP Regulatory protein RAM_24740 SM00382 ATPases associated with a variety of cellular activities RAM_24745 SM00382 ATPases associated with a variety of cellular activities RAM_24760 SM00822 RAM_24760 RAM_24770 SM00450 Rhodanese Homology Domain RAM_24800 SM00344 helix_turn_helix ASNC type RAM_24810 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RAM_24810 SM00475 5'-3' exonuclease RAM_24830 SM00487 DEAD-like helicases superfamily RAM_24830 SM00490 helicase superfamily c-terminal domain RAM_24830 SM01142 RAM_24830 RAM_24840 SM00046 Diacylglycerol kinase catalytic domain (presumed) RAM_24875 SM00829 Enoylreductase RAM_24895 SM00014 Acid phosphatase homologues RAM_24895 SM00046 Diacylglycerol kinase catalytic domain (presumed) RAM_24945 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_24965 SM00382 ATPases associated with a variety of cellular activities RAM_25025 SM00342 helix_turn_helix, arabinose operon control protein RAM_25025 SM00478 endonuclease III RAM_25025 SM01009 AlkA N-terminal domain RAM_25035 SM01018 B12 binding domain RAM_25080 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_25085 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_25090 SM00382 ATPases associated with a variety of cellular activities RAM_25100 SM00422 helix_turn_helix, mercury resistance RAM_25110 SM00327 von Willebrand factor (vWF) type A domain RAM_25155 SM00822 RAM_25155 RAM_25165 SM00448 cheY-homologous receiver domain RAM_25165 SM00862 Transcriptional regulatory protein, C terminal RAM_25170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_25170 SM00387 Histidine kinase-like ATPases RAM_25170 SM00388 His Kinase A (phosphoacceptor) domain RAM_25195 SM00327 von Willebrand factor (vWF) type A domain RAM_25280 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_25315 SM01091 Transporter associated domain RAM_25340 SM00530 Helix-turn-helix XRE-family like proteins RAM_25375 SM00422 helix_turn_helix, mercury resistance RAM_25390 SM00422 helix_turn_helix, mercury resistance RAM_25400 SM00422 helix_turn_helix, mercury resistance RAM_25405 SM00240 Forkhead associated domain RAM_25460 SM00382 ATPases associated with a variety of cellular activities RAM_25495 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_25540 SM00346 helix_turn_helix isocitrate lyase regulation RAM_25565 SM00062 Bacterial periplasmic substrate-binding proteins RAM_25570 SM00382 ATPases associated with a variety of cellular activities RAM_25580 SM00849 Metallo-beta-lactamase superfamily RAM_25585 SM00896 Ferredoxin-fold anticodon binding domain RAM_25610 SM00382 ATPases associated with a variety of cellular activities RAM_25615 SM00923 MbtH-like protein RAM_25630 SM00823 Phosphopantetheine attachment site RAM_25645 SM00382 ATPases associated with a variety of cellular activities RAM_25690 SM00382 ATPases associated with a variety of cellular activities RAM_25705 SM00060 Fibronectin type 3 domain RAM_25705 SM00636 RAM_25705 RAM_25705 SM00637 RAM_25705 RAM_25745 SM00028 Tetratricopeptide repeats RAM_25790 SM00633 Glycosyl hydrolase family 10 RAM_25805 SM00060 Fibronectin type 3 domain RAM_25805 SM00637 RAM_25805 RAM_25810 SM00060 Fibronectin type 3 domain RAM_25810 SM00637 RAM_25810 RAM_25825 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_25830 SM00354 helix_turn _helix lactose operon repressor RAM_25835 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_25850 SM00382 ATPases associated with a variety of cellular activities RAM_25855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_25855 SM00387 Histidine kinase-like ATPases RAM_25855 SM00388 His Kinase A (phosphoacceptor) domain RAM_25860 SM00448 cheY-homologous receiver domain RAM_25860 SM00862 Transcriptional regulatory protein, C terminal RAM_25875 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_25890 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_25950 SM00382 ATPases associated with a variety of cellular activities RAM_25975 SM00944 Pro-kumamolisin, activation domain RAM_25980 SM00994 ClpX C4-type zinc finger RAM_26000 SM00641 Glycosyl hydrolases family 25 RAM_26005 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_26050 SM00530 Helix-turn-helix XRE-family like proteins RAM_26205 SM00331 Sigma factor PP2C-like phosphatases RAM_26220 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_26250 SM00458 Ricin-type beta-trefoil RAM_26270 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_26295 SM00448 cheY-homologous receiver domain RAM_26300 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) RAM_26300 SM00091 PAS domain RAM_26300 SM00387 Histidine kinase-like ATPases RAM_26310 SM00421 helix_turn_helix, Lux Regulon RAM_26310 SM00448 cheY-homologous receiver domain RAM_26355 SM00421 helix_turn_helix, Lux Regulon RAM_26370 SM01018 B12 binding domain RAM_26385 SM00637 RAM_26385 RAM_26390 SM00829 Enoylreductase RAM_26415 SM00637 RAM_26415 RAM_26430 SM00637 RAM_26430 RAM_26435 SM00354 helix_turn _helix lactose operon repressor RAM_26445 SM00637 RAM_26445 RAM_26450 SM00637 RAM_26450 RAM_26455 SM00637 RAM_26455 RAM_26460 SM00354 helix_turn _helix lactose operon repressor RAM_26495 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_26500 SM00986 Uracil DNA glycosylase superfamily RAM_26500 SM00987 UreE urease accessory protein, C-terminal domain RAM_26515 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen RAM_26530 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_26530 SM01012 RAM_26530 RAM_26560 SM00880 RAM_26560 RAM_26560 SM01118 RAM_26560 RAM_26570 SM01012 RAM_26570 RAM_26630 SM00812 Alpha-L-fucosidase RAM_26690 SM00507 HNH nucleases RAM_26710 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_26720 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_26740 SM00354 helix_turn _helix lactose operon repressor RAM_26745 SM01217 RAM_26745 RAM_26765 SM00849 Metallo-beta-lactamase superfamily RAM_26770 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_26810 SM00996 S-adenosyl-L-homocysteine hydrolase RAM_26810 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RAM_26825 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen RAM_26845 SM00960 Roadblock/LC7 domain RAM_26850 SM00387 Histidine kinase-like ATPases RAM_26860 SM00382 ATPases associated with a variety of cellular activities RAM_26865 SM00382 ATPases associated with a variety of cellular activities RAM_26885 SM00028 Tetratricopeptide repeats RAM_26885 SM00862 Transcriptional regulatory protein, C terminal RAM_26885 SM01043 Bacterial transcriptional activator domain RAM_26895 SM00342 helix_turn_helix, arabinose operon control protein RAM_26910 SM00849 Metallo-beta-lactamase superfamily RAM_26945 SM00421 helix_turn_helix, Lux Regulon RAM_26960 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_26970 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_26970 SM00954 Region found in RelA / SpoT proteins RAM_26990 SM01323 RAM_26990 RAM_26995 SM00382 ATPases associated with a variety of cellular activities RAM_27040 SM00530 Helix-turn-helix XRE-family like proteins RAM_27060 SM00823 Phosphopantetheine attachment site RAM_27065 SM00824 Thioesterase RAM_27075 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_27085 SM00838 Elongation factor G C-terminus RAM_27085 SM00889 Elongation factor G, domain IV RAM_27125 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_27135 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain RAM_27165 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_27200 SM00822 RAM_27200 RAM_27215 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_27230 SM00344 helix_turn_helix ASNC type RAM_27235 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_27315 SM00046 Diacylglycerol kinase catalytic domain (presumed) RAM_27335 SM00710 Parallel beta-helix repeats RAM_27370 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_27450 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_27450 SM00895 RAM_27450 RAM_27510 SM00823 Phosphopantetheine attachment site RAM_27545 SM00421 helix_turn_helix, Lux Regulon RAM_27545 SM00448 cheY-homologous receiver domain RAM_27550 SM00387 Histidine kinase-like ATPases RAM_27560 SM00382 ATPases associated with a variety of cellular activities RAM_27575 SM00823 Phosphopantetheine attachment site RAM_27610 SM00382 ATPases associated with a variety of cellular activities RAM_27635 SM00862 Transcriptional regulatory protein, C terminal RAM_27635 SM01043 Bacterial transcriptional activator domain RAM_27680 SM00822 RAM_27680 RAM_27700 SM00825 Beta-ketoacyl synthase RAM_27705 SM00825 Beta-ketoacyl synthase RAM_27795 SM00028 Tetratricopeptide repeats RAM_27795 SM00530 Helix-turn-helix XRE-family like proteins RAM_27825 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_27865 SM00831 Cation transporter/ATPase, N-terminus RAM_27885 SM00881 CoA binding domain RAM_27890 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_27900 SM00421 helix_turn_helix, Lux Regulon RAM_27900 SM00448 cheY-homologous receiver domain RAM_27915 SM00382 ATPases associated with a variety of cellular activities RAM_27930 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_27945 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_27995 SM00421 helix_turn_helix, Lux Regulon RAM_27995 SM00448 cheY-homologous receiver domain RAM_28000 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_28000 SM01012 RAM_28000 RAM_28015 SM00448 cheY-homologous receiver domain RAM_28040 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_28045 SM00849 Metallo-beta-lactamase superfamily RAM_28065 SM00387 Histidine kinase-like ATPases RAM_28070 SM00421 helix_turn_helix, Lux Regulon RAM_28070 SM00448 cheY-homologous receiver domain RAM_28080 SM00710 Parallel beta-helix repeats RAM_28085 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_28120 SM00855 Phosphoglycerate mutase family RAM_28140 SM00306 Hint (Hedgehog/Intein) domain N-terminal region RAM_28145 SM00560 LamG-like jellyroll fold domain RAM_28185 SM00267 diguanylate cyclase RAM_28195 SM00458 Ricin-type beta-trefoil RAM_28245 SM00382 ATPases associated with a variety of cellular activities RAM_28250 SM00382 ATPases associated with a variety of cellular activities RAM_28325 SM00346 helix_turn_helix isocitrate lyase regulation RAM_28345 SM00028 Tetratricopeptide repeats RAM_28365 SM01012 RAM_28365 RAM_28390 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_28410 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_28410 SM00387 Histidine kinase-like ATPases RAM_28420 SM00421 helix_turn_helix, Lux Regulon RAM_28420 SM00448 cheY-homologous receiver domain RAM_28425 SM00749 bacterial OsmY and nodulation domain RAM_28430 SM00244 prohibitin homologues RAM_28450 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_28450 SM01012 RAM_28450 RAM_28455 SM01012 RAM_28455 RAM_28565 SM00458 Ricin-type beta-trefoil RAM_28575 SM00448 cheY-homologous receiver domain RAM_28575 SM00862 Transcriptional regulatory protein, C terminal RAM_28580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_28580 SM00387 Histidine kinase-like ATPases RAM_28580 SM00388 His Kinase A (phosphoacceptor) domain RAM_28630 SM00822 RAM_28630 RAM_28660 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_28675 SM00458 Ricin-type beta-trefoil RAM_28685 SM00822 RAM_28685 RAM_28720 SM00637 RAM_28720 RAM_28760 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_28810 SM00421 helix_turn_helix, Lux Regulon RAM_28815 SM00421 helix_turn_helix, Lux Regulon RAM_28845 SM00822 RAM_28845 RAM_28860 SM00421 helix_turn_helix, Lux Regulon RAM_28875 SM00382 ATPases associated with a variety of cellular activities RAM_28935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_28935 SM00387 Histidine kinase-like ATPases RAM_28935 SM00388 His Kinase A (phosphoacceptor) domain RAM_28940 SM00448 cheY-homologous receiver domain RAM_28940 SM00862 Transcriptional regulatory protein, C terminal RAM_29120 SM00346 helix_turn_helix isocitrate lyase regulation RAM_29145 SM00357 Cold shock protein domain RAM_29185 SM00560 LamG-like jellyroll fold domain RAM_29185 SM01038 Beta galactosidase small chain RAM_29250 SM00448 cheY-homologous receiver domain RAM_29250 SM00862 Transcriptional regulatory protein, C terminal RAM_29255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_29255 SM00387 Histidine kinase-like ATPases RAM_29255 SM00388 His Kinase A (phosphoacceptor) domain RAM_29270 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_29280 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_29320 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_29435 SM01092 CO dehydrogenase flavoprotein C-terminal domain RAM_29465 SM00530 Helix-turn-helix XRE-family like proteins RAM_29475 SM00530 Helix-turn-helix XRE-family like proteins RAM_29510 SM00354 helix_turn _helix lactose operon repressor RAM_29550 SM00354 helix_turn _helix lactose operon repressor RAM_29560 SM00849 Metallo-beta-lactamase superfamily RAM_29570 SM00342 helix_turn_helix, arabinose operon control protein RAM_29635 SM00028 Tetratricopeptide repeats RAM_29770 SM01101 RAM_29770 RAM_29875 SM00320 WD40 repeats RAM_29885 SM00857 Resolvase, N terminal domain RAM_29895 SM00637 RAM_29895 RAM_29935 SM00422 helix_turn_helix, mercury resistance RAM_29935 SM00871 Bacterial transcription activator, effector binding domain RAM_29940 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_29950 SM00368 Leucine rich repeat, ribonuclease inhibitor type RAM_29960 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_29960 SM01134 RAM_29960 RAM_30005 SM00327 von Willebrand factor (vWF) type A domain RAM_30010 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_30025 SM00382 ATPases associated with a variety of cellular activities RAM_30030 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_30045 SM00507 HNH nucleases RAM_30050 SM00344 helix_turn_helix ASNC type RAM_30060 SM00421 helix_turn_helix, Lux Regulon RAM_30060 SM00448 cheY-homologous receiver domain RAM_30075 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_30150 SM00382 ATPases associated with a variety of cellular activities RAM_30165 SM00633 Glycosyl hydrolase family 10 RAM_30165 SM00637 RAM_30165 RAM_30170 SM00530 Helix-turn-helix XRE-family like proteins RAM_30190 SM00855 Phosphoglycerate mutase family RAM_30195 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_30195 SM00331 Sigma factor PP2C-like phosphatases RAM_30210 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_30210 SM00331 Sigma factor PP2C-like phosphatases RAM_30220 SM00091 PAS domain RAM_30220 SM00331 Sigma factor PP2C-like phosphatases RAM_30220 SM00387 Histidine kinase-like ATPases RAM_30220 SM00388 His Kinase A (phosphoacceptor) domain RAM_30220 SM00448 cheY-homologous receiver domain RAM_30230 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_30230 SM01012 RAM_30230 RAM_30280 SM00028 Tetratricopeptide repeats RAM_30280 SM00862 Transcriptional regulatory protein, C terminal RAM_30280 SM01043 Bacterial transcriptional activator domain RAM_30285 SM00530 Helix-turn-helix XRE-family like proteins RAM_30380 SM00530 Helix-turn-helix XRE-family like proteins RAM_30410 SM00382 ATPases associated with a variety of cellular activities RAM_30435 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_30525 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_30595 SM00327 von Willebrand factor (vWF) type A domain RAM_30635 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_30640 SM01130 RAM_30640 RAM_30650 SM00346 helix_turn_helix isocitrate lyase regulation RAM_30680 SM00421 helix_turn_helix, Lux Regulon RAM_30680 SM00448 cheY-homologous receiver domain RAM_30715 SM00342 helix_turn_helix, arabinose operon control protein RAM_30750 SM00823 Phosphopantetheine attachment site RAM_30755 SM00382 ATPases associated with a variety of cellular activities RAM_30760 SM00563 Phosphate acyltransferases RAM_30790 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_30800 SM00363 S4 RNA-binding domain RAM_30850 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_30850 SM00895 RAM_30850 RAM_30890 SM00829 Enoylreductase RAM_30895 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_30910 SM00363 S4 RNA-binding domain RAM_30990 SM00859 Semialdehyde dehydrogenase, NAD binding domain RAM_31020 SM00873 B3/4 domain RAM_31020 SM00874 tRNA synthetase B5 domain RAM_31020 SM00896 Ferredoxin-fold anticodon binding domain RAM_31060 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_31060 SM00895 RAM_31060 RAM_31075 SM00346 helix_turn_helix isocitrate lyase regulation RAM_31085 SM01119 RAM_31085 RAM_31130 SM00448 cheY-homologous receiver domain RAM_31135 SM00091 PAS domain RAM_31135 SM00387 Histidine kinase-like ATPases RAM_31190 SM00849 Metallo-beta-lactamase superfamily RAM_31220 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_31220 SM00419 helix_turn_helix, cAMP Regulatory protein RAM_31260 SM00855 Phosphoglycerate mutase family RAM_31275 SM00342 helix_turn_helix, arabinose operon control protein RAM_31280 SM00354 helix_turn _helix lactose operon repressor RAM_31290 SM00953 RAM_31290 RAM_31315 SM00382 ATPases associated with a variety of cellular activities RAM_31315 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_31355 SM00487 DEAD-like helicases superfamily RAM_31355 SM00490 helicase superfamily c-terminal domain RAM_31405 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_31425 SM00382 ATPases associated with a variety of cellular activities RAM_31440 SM00342 helix_turn_helix, arabinose operon control protein RAM_31445 SM00829 Enoylreductase RAM_31455 SM00054 EF-hand, calcium binding motif RAM_31460 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs RAM_31460 SM00474 3'-5' exonuclease RAM_31460 SM00475 5'-3' exonuclease RAM_31460 SM00482 DNA polymerase A domain RAM_31495 SM00382 ATPases associated with a variety of cellular activities RAM_31500 SM00382 ATPases associated with a variety of cellular activities RAM_31510 SM00448 cheY-homologous receiver domain RAM_31510 SM01012 RAM_31510 RAM_31560 SM00943 Bifunctional DNA primase/polymerase, N-terminal RAM_31645 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_31765 SM00421 helix_turn_helix, Lux Regulon RAM_31765 SM00448 cheY-homologous receiver domain RAM_31785 SM00421 helix_turn_helix, Lux Regulon RAM_31785 SM00448 cheY-homologous receiver domain RAM_31855 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_31865 SM00346 helix_turn_helix isocitrate lyase regulation RAM_31875 SM00530 Helix-turn-helix XRE-family like proteins RAM_31890 SM00342 helix_turn_helix, arabinose operon control protein RAM_31910 SM00530 Helix-turn-helix XRE-family like proteins RAM_31920 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_31920 SM01012 RAM_31920 RAM_31960 SM00823 Phosphopantetheine attachment site RAM_31965 SM00823 Phosphopantetheine attachment site RAM_31980 SM00823 Phosphopantetheine attachment site RAM_31990 SM00923 MbtH-like protein RAM_31995 SM00823 Phosphopantetheine attachment site RAM_32025 SM00823 Phosphopantetheine attachment site RAM_32030 SM00421 helix_turn_helix, Lux Regulon RAM_32155 SM00460 Transglutaminase/protease-like homologues RAM_32180 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_32180 SM01232 RAM_32180 RAM_32215 SM00530 Helix-turn-helix XRE-family like proteins RAM_32230 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_32265 SM00843 RAM_32265 RAM_32270 SM00563 Phosphate acyltransferases RAM_32300 SM00327 von Willebrand factor (vWF) type A domain RAM_32305 SM00849 Metallo-beta-lactamase superfamily RAM_32310 SM01130 RAM_32310 RAM_32315 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_32400 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_32400 SM00322 K homology RNA-binding domain RAM_32405 SM01387 RAM_32405 RAM_32420 SM00904 Riboflavin kinase RAM_32510 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_32560 SM00421 helix_turn_helix, Lux Regulon RAM_32560 SM00448 cheY-homologous receiver domain RAM_32585 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_32600 SM00448 cheY-homologous receiver domain RAM_32600 SM00862 Transcriptional regulatory protein, C terminal RAM_32605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_32605 SM00387 Histidine kinase-like ATPases RAM_32605 SM00388 His Kinase A (phosphoacceptor) domain RAM_32615 SM00028 Tetratricopeptide repeats RAM_32625 SM00028 Tetratricopeptide repeats RAM_32625 SM00862 Transcriptional regulatory protein, C terminal RAM_32625 SM01043 Bacterial transcriptional activator domain RAM_32670 SM00822 RAM_32670 RAM_32740 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_32755 SM00028 Tetratricopeptide repeats RAM_32755 SM00862 Transcriptional regulatory protein, C terminal RAM_32755 SM01043 Bacterial transcriptional activator domain RAM_32795 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_32815 SM00387 Histidine kinase-like ATPases RAM_32820 SM00960 Roadblock/LC7 domain RAM_32915 SM00829 Enoylreductase RAM_32970 SM00458 Ricin-type beta-trefoil RAM_32975 SM00458 Ricin-type beta-trefoil RAM_32975 SM00633 Glycosyl hydrolase family 10 RAM_33030 SM00421 helix_turn_helix, Lux Regulon RAM_33045 SM01043 Bacterial transcriptional activator domain RAM_33105 SM00028 Tetratricopeptide repeats RAM_33105 SM00862 Transcriptional regulatory protein, C terminal RAM_33105 SM01043 Bacterial transcriptional activator domain RAM_33140 SM00849 Metallo-beta-lactamase superfamily RAM_33145 SM00421 helix_turn_helix, Lux Regulon RAM_33150 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RAM_33160 SM00421 helix_turn_helix, Lux Regulon RAM_33200 SM00421 helix_turn_helix, Lux Regulon RAM_33205 SM00421 helix_turn_helix, Lux Regulon RAM_33215 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_33220 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_33230 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain RAM_33270 SM00382 ATPases associated with a variety of cellular activities RAM_33280 SM00387 Histidine kinase-like ATPases RAM_33285 SM00421 helix_turn_helix, Lux Regulon RAM_33285 SM00448 cheY-homologous receiver domain RAM_33350 SM00382 ATPases associated with a variety of cellular activities RAM_33365 SM00421 helix_turn_helix, Lux Regulon RAM_33365 SM00448 cheY-homologous receiver domain RAM_33450 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_33455 SM00342 helix_turn_helix, arabinose operon control protein RAM_33475 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_33475 SM01012 RAM_33475 RAM_33510 SM00382 ATPases associated with a variety of cellular activities RAM_33550 SM01012 RAM_33550 RAM_33555 SM01012 RAM_33555 RAM_33570 SM01012 RAM_33570 RAM_33575 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_33575 SM01012 RAM_33575 RAM_33580 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_33580 SM01012 RAM_33580 RAM_33600 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_33600 SM01012 RAM_33600 RAM_33605 SM00331 Sigma factor PP2C-like phosphatases RAM_33655 SM01012 RAM_33655 RAM_33660 SM00829 Enoylreductase RAM_33690 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_33745 SM00829 Enoylreductase RAM_33760 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_33770 SM00382 ATPases associated with a variety of cellular activities RAM_33795 SM00400 zinc finger RAM_33795 SM00493 RAM_33795 RAM_33795 SM00766 DNA primase DnaG DnaB-binding RAM_33820 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_33850 SM00093 SERine Proteinase INhibitors RAM_33855 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_33865 SM00421 helix_turn_helix, Lux Regulon RAM_33865 SM00448 cheY-homologous receiver domain RAM_33880 SM00382 ATPases associated with a variety of cellular activities RAM_33905 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_33980 SM01091 Transporter associated domain RAM_34010 SM00271 DnaJ molecular chaperone homology domain RAM_34075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_34075 SM00387 Histidine kinase-like ATPases RAM_34075 SM00388 His Kinase A (phosphoacceptor) domain RAM_34080 SM00448 cheY-homologous receiver domain RAM_34080 SM00862 Transcriptional regulatory protein, C terminal RAM_34135 SM00829 Enoylreductase RAM_34140 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_34220 SM00829 Enoylreductase RAM_34240 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_34245 SM00495 Chitin-binding domain type 3 RAM_34275 SM00838 Elongation factor G C-terminus RAM_34315 SM00849 Metallo-beta-lactamase superfamily RAM_34320 SM00278 Helix-hairpin-helix DNA-binding motif class 1 RAM_34335 SM00855 Phosphoglycerate mutase family RAM_34350 SM00487 DEAD-like helicases superfamily RAM_34350 SM00490 helicase superfamily c-terminal domain RAM_34360 SM00836 DALR anticodon binding domain RAM_34360 SM01016 Arginyl tRNA synthetase N terminal dom RAM_34385 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase RAM_34405 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_34425 SM00382 ATPases associated with a variety of cellular activities RAM_34440 SM00562 RAM_34440 RAM_34500 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_34570 SM00382 ATPases associated with a variety of cellular activities RAM_34570 SM00994 ClpX C4-type zinc finger RAM_34570 SM01086 C-terminal, D2-small domain, of ClpB protein RAM_34605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_34605 SM00387 Histidine kinase-like ATPases RAM_34605 SM00388 His Kinase A (phosphoacceptor) domain RAM_34620 SM00530 Helix-turn-helix XRE-family like proteins RAM_34640 SM00530 Helix-turn-helix XRE-family like proteins RAM_34650 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_34650 SM00419 helix_turn_helix, cAMP Regulatory protein RAM_34685 SM00862 Transcriptional regulatory protein, C terminal RAM_34685 SM01043 Bacterial transcriptional activator domain RAM_34690 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RAM_34735 SM00382 ATPases associated with a variety of cellular activities RAM_34765 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_34815 SM00331 Sigma factor PP2C-like phosphatases RAM_34820 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_34820 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_34820 SM00387 Histidine kinase-like ATPases RAM_34820 SM00388 His Kinase A (phosphoacceptor) domain RAM_34820 SM00448 cheY-homologous receiver domain RAM_34850 SM00530 Helix-turn-helix XRE-family like proteins RAM_34885 SM00822 RAM_34885 RAM_34915 SM00606 Cellulose Binding Domain Type IV RAM_34945 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_34945 SM01232 RAM_34945 RAM_34965 SM00849 Metallo-beta-lactamase superfamily RAM_35000 SM00507 HNH nucleases RAM_35015 SM00642 Alpha-amylase domain RAM_35045 SM00382 ATPases associated with a variety of cellular activities RAM_35055 SM00855 Phosphoglycerate mutase family RAM_35210 SM00903 Flavin reductase like domain RAM_35220 SM00822 RAM_35220 RAM_35220 SM00825 Beta-ketoacyl synthase RAM_35220 SM00826 RAM_35220 RAM_35220 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. RAM_35270 SM00342 helix_turn_helix, arabinose operon control protein RAM_35275 SM00862 Transcriptional regulatory protein, C terminal RAM_35275 SM01043 Bacterial transcriptional activator domain RAM_35315 SM00421 helix_turn_helix, Lux Regulon RAM_35315 SM00448 cheY-homologous receiver domain RAM_35325 SM00342 helix_turn_helix, arabinose operon control protein RAM_35330 SM00421 helix_turn_helix, Lux Regulon RAM_35330 SM00448 cheY-homologous receiver domain RAM_35405 SM00822 RAM_35405 RAM_35420 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_35455 SM00710 Parallel beta-helix repeats RAM_35460 SM00231 Coagulation factor 5/8 C-terminal domain, discoidin domain RAM_35460 SM00710 Parallel beta-helix repeats RAM_35465 SM00448 cheY-homologous receiver domain RAM_35465 SM00862 Transcriptional regulatory protein, C terminal RAM_35470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_35470 SM00387 Histidine kinase-like ATPases RAM_35470 SM00388 His Kinase A (phosphoacceptor) domain RAM_35485 SM00354 helix_turn _helix lactose operon repressor RAM_35505 SM00642 Alpha-amylase domain RAM_35510 SM00382 ATPases associated with a variety of cellular activities RAM_35580 SM00563 Phosphate acyltransferases RAM_35590 SM00354 helix_turn _helix lactose operon repressor RAM_35605 SM00346 helix_turn_helix isocitrate lyase regulation RAM_35610 SM00448 cheY-homologous receiver domain RAM_35610 SM00862 Transcriptional regulatory protein, C terminal RAM_35615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_35615 SM00387 Histidine kinase-like ATPases RAM_35615 SM00388 His Kinase A (phosphoacceptor) domain RAM_35705 SM00849 Metallo-beta-lactamase superfamily RAM_35720 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RAM_35750 SM00822 RAM_35750 RAM_35785 SM00855 Phosphoglycerate mutase family RAM_35795 SM00822 RAM_35795 RAM_35805 SM00421 helix_turn_helix, Lux Regulon RAM_35820 SM00482 DNA polymerase A domain RAM_35830 SM00382 ATPases associated with a variety of cellular activities RAM_35830 SM00487 DEAD-like helicases superfamily RAM_35830 SM00490 helicase superfamily c-terminal domain RAM_35830 SM00847 Helicase associated domain (HA2) Add an annotation RAM_35865 SM00481 DNA polymerase alpha chain like domain RAM_35875 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_35875 SM00895 RAM_35875 RAM_35900 SM00267 diguanylate cyclase RAM_35950 SM00316 Ribosomal protein S1-like RNA-binding domain RAM_35965 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_35975 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain RAM_35975 SM01232 RAM_35975 RAM_36040 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_36040 SM00387 Histidine kinase-like ATPases RAM_36045 SM00421 helix_turn_helix, Lux Regulon RAM_36045 SM00448 cheY-homologous receiver domain RAM_36050 SM00481 DNA polymerase alpha chain like domain RAM_36055 SM00382 ATPases associated with a variety of cellular activities RAM_36060 SM00382 ATPases associated with a variety of cellular activities RAM_36195 SM00327 von Willebrand factor (vWF) type A domain RAM_36195 SM00382 ATPases associated with a variety of cellular activities RAM_36250 SM00382 ATPases associated with a variety of cellular activities RAM_36260 SM00530 Helix-turn-helix XRE-family like proteins RAM_36275 SM00495 Chitin-binding domain type 3 RAM_36335 SM00479 RAM_36335 RAM_36370 SM00257 Lysin motif RAM_36370 SM01043 Bacterial transcriptional activator domain RAM_36495 SM00530 Helix-turn-helix XRE-family like proteins RAM_36505 SM00530 Helix-turn-helix XRE-family like proteins RAM_36565 SM00829 Enoylreductase RAM_36570 SM00861 Transketolase, pyrimidine binding domain RAM_36620 SM00903 Flavin reductase like domain RAM_36635 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_36635 SM00895 RAM_36635 RAM_36690 SM00822 RAM_36690 RAM_36720 SM00829 Enoylreductase RAM_36750 SM00382 ATPases associated with a variety of cellular activities RAM_36755 SM00382 ATPases associated with a variety of cellular activities RAM_36785 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_36785 SM00895 RAM_36785 RAM_36800 SM00829 Enoylreductase RAM_36840 SM00822 RAM_36840 RAM_36895 SM00346 helix_turn_helix isocitrate lyase regulation RAM_36915 SM00903 Flavin reductase like domain RAM_36950 SM00822 RAM_36950 RAM_37035 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain RAM_37055 SM00822 RAM_37055 RAM_37145 SM00829 Enoylreductase RAM_37160 SM00421 helix_turn_helix, Lux Regulon RAM_37160 SM00448 cheY-homologous receiver domain RAM_37180 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_37220 SM01007 Class II Aldolase and Adducin N-terminal domain RAM_37230 SM00849 Metallo-beta-lactamase superfamily RAM_37270 SM00354 helix_turn _helix lactose operon repressor RAM_37305 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_37305 SM00895 RAM_37305 RAM_37330 SM01217 RAM_37330 RAM_37375 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_37375 SM00866 RAM_37375 RAM_37450 SM00470 ParB-like nuclease domain RAM_37635 SM00530 Helix-turn-helix XRE-family like proteins RAM_37675 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_37715 SM00822 RAM_37715 RAM_37720 SM00342 helix_turn_helix, arabinose operon control protein RAM_37770 SM00364 Leucine-rich repeats, bacterial type RAM_37770 SM00369 Leucine-rich repeats, typical (most populated) subfamily RAM_37775 SM00306 Hint (Hedgehog/Intein) domain N-terminal region RAM_37780 SM00560 LamG-like jellyroll fold domain RAM_37790 SM00637 RAM_37790 RAM_37810 SM00342 helix_turn_helix, arabinose operon control protein RAM_37855 SM00382 ATPases associated with a variety of cellular activities RAM_37885 SM00020 Trypsin-like serine protease RAM_37935 SM01217 RAM_37935 RAM_37960 SM00382 ATPases associated with a variety of cellular activities RAM_37965 SM00060 Fibronectin type 3 domain RAM_37965 SM00637 RAM_37965 RAM_37970 SM00458 Ricin-type beta-trefoil RAM_37985 SM01012 RAM_37985 RAM_38105 SM00060 Fibronectin type 3 domain RAM_38105 SM00637 RAM_38105 RAM_38115 SM00354 helix_turn _helix lactose operon repressor RAM_38175 SM00331 Sigma factor PP2C-like phosphatases RAM_38185 SM01130 RAM_38185 RAM_38255 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_38265 SM00060 Fibronectin type 3 domain RAM_38270 SM00481 DNA polymerase alpha chain like domain RAM_38315 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_38320 SM00382 ATPases associated with a variety of cellular activities RAM_38380 SM00960 Roadblock/LC7 domain RAM_38385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_38385 SM00387 Histidine kinase-like ATPases RAM_38390 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_38420 SM00421 helix_turn_helix, Lux Regulon RAM_38445 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. RAM_38445 SM01012 RAM_38445 RAM_38455 SM00458 Ricin-type beta-trefoil RAM_38465 SM00813 Alpha-L-arabinofuranosidase C-terminus RAM_38485 SM00354 helix_turn _helix lactose operon repressor RAM_38510 SM00829 Enoylreductase RAM_38525 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. RAM_38575 SM00363 S4 RNA-binding domain RAM_38615 SM00052 Putative diguanylate phosphodiesterase RAM_38615 SM00267 diguanylate cyclase RAM_38640 SM00636 RAM_38640 RAM_38680 SM00530 Helix-turn-helix XRE-family like proteins RAM_38740 SM00327 von Willebrand factor (vWF) type A domain RAM_38750 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_38770 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_38780 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_38820 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_38820 SM00895 RAM_38820 RAM_38895 SM00861 Transketolase, pyrimidine binding domain RAM_38905 SM00344 helix_turn_helix ASNC type RAM_38930 SM00448 cheY-homologous receiver domain RAM_38930 SM00862 Transcriptional regulatory protein, C terminal RAM_38935 SM00387 Histidine kinase-like ATPases RAM_38935 SM00388 His Kinase A (phosphoacceptor) domain RAM_38945 SM00346 helix_turn_helix isocitrate lyase regulation RAM_38950 SM00060 Fibronectin type 3 domain RAM_38950 SM00636 RAM_38950 RAM_38965 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_38985 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_39015 SM00448 cheY-homologous receiver domain RAM_39020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_39020 SM00387 Histidine kinase-like ATPases RAM_39020 SM00388 His Kinase A (phosphoacceptor) domain RAM_39025 SM00331 Sigma factor PP2C-like phosphatases RAM_39025 SM00448 cheY-homologous receiver domain RAM_39095 SM00822 RAM_39095 RAM_39165 SM00382 ATPases associated with a variety of cellular activities RAM_39185 SM00028 Tetratricopeptide repeats RAM_39285 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_39310 SM00342 helix_turn_helix, arabinose operon control protein RAM_39360 SM00507 HNH nucleases RAM_39425 SM00506 Appr-1"-p processing enzyme RAM_39455 SM00960 Roadblock/LC7 domain RAM_39460 SM00387 Histidine kinase-like ATPases RAM_39485 SM00267 diguanylate cyclase RAM_39535 SM00342 helix_turn_helix, arabinose operon control protein RAM_39545 SM00342 helix_turn_helix, arabinose operon control protein RAM_39585 SM00849 Metallo-beta-lactamase superfamily RAM_39630 SM00232 JAB/MPN domain RAM_39680 SM00491 RAM_39680 RAM_39750 SM00834 Putative regulatory protein RAM_39760 SM00344 helix_turn_helix ASNC type RAM_39770 SM00344 helix_turn_helix ASNC type RAM_39800 SM01120 RAM_39800 RAM_39860 SM00342 helix_turn_helix, arabinose operon control protein RAM_39940 SM00382 ATPases associated with a variety of cellular activities RAM_40015 SM00937 RAM_40015 RAM_40025 SM00357 Cold shock protein domain RAM_40025 SM00382 ATPases associated with a variety of cellular activities RAM_40025 SM00959 Rho termination factor, N-terminal domain RAM_40050 SM00836 DALR anticodon binding domain RAM_40050 SM01016 Arginyl tRNA synthetase N terminal dom RAM_40075 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_40080 SM00822 RAM_40080 RAM_40095 SM00829 Enoylreductase RAM_40110 SM00342 helix_turn_helix, arabinose operon control protein RAM_40185 SM00028 Tetratricopeptide repeats RAM_40185 SM00862 Transcriptional regulatory protein, C terminal RAM_40185 SM01043 Bacterial transcriptional activator domain RAM_40200 SM00710 Parallel beta-helix repeats RAM_40205 SM00060 Fibronectin type 3 domain RAM_40205 SM00458 Ricin-type beta-trefoil RAM_40210 SM00458 Ricin-type beta-trefoil RAM_40215 SM00458 Ricin-type beta-trefoil RAM_40220 SM00060 Fibronectin type 3 domain RAM_40220 SM00637 RAM_40220 RAM_40235 SM00458 Ricin-type beta-trefoil RAM_40240 SM00458 Ricin-type beta-trefoil RAM_40245 SM00710 Parallel beta-helix repeats RAM_40260 SM00637 RAM_40260 RAM_40265 SM00422 helix_turn_helix, mercury resistance RAM_40340 SM00346 helix_turn_helix isocitrate lyase regulation RAM_40370 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_40370 SM00419 helix_turn_helix, cAMP Regulatory protein RAM_40380 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_40380 SM00895 RAM_40380 RAM_40465 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_40465 SM00895 RAM_40465 RAM_40475 SM01329 RAM_40475 RAM_40505 SM00960 Roadblock/LC7 domain RAM_40545 SM00421 helix_turn_helix, Lux Regulon RAM_40545 SM00448 cheY-homologous receiver domain RAM_40590 SM00382 ATPases associated with a variety of cellular activities RAM_40680 SM00822 RAM_40680 RAM_40715 SM00878 Biotin carboxylase C-terminal domain RAM_40800 SM00829 Enoylreductase RAM_40805 SM01002 Alanine dehydrogenase/PNT, C-terminal domain RAM_40805 SM01003 Alanine dehydrogenase/PNT, N-terminal domain RAM_40815 SM00387 Histidine kinase-like ATPases RAM_40820 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_40825 SM00862 Transcriptional regulatory protein, C terminal RAM_40830 SM00382 ATPases associated with a variety of cellular activities RAM_40840 SM00382 ATPases associated with a variety of cellular activities RAM_40855 SM00861 Transketolase, pyrimidine binding domain RAM_40905 SM00382 ATPases associated with a variety of cellular activities RAM_40915 SM00919 Malic enzyme, NAD binding domain RAM_40915 SM01274 RAM_40915 RAM_40930 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_40945 SM00855 Phosphoglycerate mutase family RAM_40960 SM00046 Diacylglycerol kinase catalytic domain (presumed) RAM_40970 SM00387 Histidine kinase-like ATPases RAM_41025 SM00967 RNA 2'-O ribose methyltransferase substrate binding RAM_41045 SM00957 SecA DEAD-like domain RAM_41045 SM00958 SecA preprotein cross-linking domain RAM_41060 SM00909 Sporulation and spore germination RAM_41065 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_41065 SM00387 Histidine kinase-like ATPases RAM_41065 SM00388 His Kinase A (phosphoacceptor) domain RAM_41070 SM00448 cheY-homologous receiver domain RAM_41070 SM00862 Transcriptional regulatory protein, C terminal RAM_41080 SM00346 helix_turn_helix isocitrate lyase regulation RAM_41135 SM00996 S-adenosyl-L-homocysteine hydrolase RAM_41135 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain RAM_41160 SM00862 Transcriptional regulatory protein, C terminal RAM_41160 SM01043 Bacterial transcriptional activator domain RAM_41225 SM00382 ATPases associated with a variety of cellular activities RAM_41255 SM00838 Elongation factor G C-terminus RAM_41280 SM00387 Histidine kinase-like ATPases RAM_41280 SM00388 His Kinase A (phosphoacceptor) domain RAM_41285 SM00448 cheY-homologous receiver domain RAM_41285 SM00862 Transcriptional regulatory protein, C terminal RAM_41295 SM00382 ATPases associated with a variety of cellular activities RAM_41305 SM00382 ATPases associated with a variety of cellular activities RAM_41355 SM00342 helix_turn_helix, arabinose operon control protein RAM_41355 SM01009 AlkA N-terminal domain RAM_41415 SM00020 Trypsin-like serine protease RAM_41430 SM00530 Helix-turn-helix XRE-family like proteins RAM_41450 SM00849 Metallo-beta-lactamase superfamily RAM_41470 SM01240 RAM_41470 RAM_41480 SM00670 Large family of predicted nucleotide-binding domains RAM_41580 SM00849 Metallo-beta-lactamase superfamily RAM_41585 SM00344 helix_turn_helix ASNC type RAM_41650 SM00116 Domain in cystathionine beta-synthase and other proteins. RAM_41680 SM00822 RAM_41680 RAM_41695 SM00421 helix_turn_helix, Lux Regulon RAM_41710 SM00862 Transcriptional regulatory protein, C terminal RAM_41710 SM01043 Bacterial transcriptional activator domain RAM_41715 SM00421 helix_turn_helix, Lux Regulon RAM_41715 SM00862 Transcriptional regulatory protein, C terminal RAM_41715 SM01043 Bacterial transcriptional activator domain RAM_41740 SM00421 helix_turn_helix, Lux Regulon RAM_41765 SM00344 helix_turn_helix ASNC type RAM_41780 SM00495 Chitin-binding domain type 3 RAM_41785 SM00824 Thioesterase RAM_41790 SM00495 Chitin-binding domain type 3 RAM_41795 SM00342 helix_turn_helix, arabinose operon control protein RAM_41810 SM00637 RAM_41810 RAM_41815 SM00889 Elongation factor G, domain IV RAM_41825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_41825 SM00387 Histidine kinase-like ATPases RAM_41825 SM00388 His Kinase A (phosphoacceptor) domain RAM_41830 SM01192 RAM_41830 RAM_41830 SM01193 RAM_41830 RAM_41840 SM00382 ATPases associated with a variety of cellular activities RAM_41860 SM00028 Tetratricopeptide repeats RAM_41870 SM00862 Transcriptional regulatory protein, C terminal RAM_41870 SM01043 Bacterial transcriptional activator domain RAM_41885 SM00382 ATPases associated with a variety of cellular activities RAM_41885 SM00421 helix_turn_helix, Lux Regulon RAM_41910 SM00382 ATPases associated with a variety of cellular activities RAM_41945 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_42045 SM00986 Uracil DNA glycosylase superfamily RAM_42045 SM00987 UreE urease accessory protein, C-terminal domain RAM_42065 SM00382 ATPases associated with a variety of cellular activities RAM_42070 SM00382 ATPases associated with a variety of cellular activities RAM_42110 SM01192 RAM_42110 RAM_42110 SM01193 RAM_42110 RAM_42120 SM00028 Tetratricopeptide repeats RAM_42175 SM00382 ATPases associated with a variety of cellular activities RAM_42205 SM00530 Helix-turn-helix XRE-family like proteins RAM_42210 SM00487 DEAD-like helicases superfamily RAM_42210 SM00490 helicase superfamily c-terminal domain RAM_42210 SM00982 RAM_42210 RAM_42210 SM01058 CarD-like/TRCF domain RAM_42220 SM00530 Helix-turn-helix XRE-family like proteins RAM_42235 SM00387 Histidine kinase-like ATPases RAM_42240 SM00421 helix_turn_helix, Lux Regulon RAM_42240 SM00448 cheY-homologous receiver domain RAM_42285 SM00267 diguanylate cyclase RAM_42295 SM01400 RAM_42295 RAM_42340 SM00382 ATPases associated with a variety of cellular activities RAM_42345 SM01022 RAM_42345 RAM_42355 SM00382 ATPases associated with a variety of cellular activities RAM_42360 SM00650 Ribosomal RNA adenine dimethylases RAM_42365 SM01208 RAM_42365 RAM_42385 SM00382 ATPases associated with a variety of cellular activities RAM_42405 SM00829 Enoylreductase RAM_42425 SM00342 helix_turn_helix, arabinose operon control protein RAM_42435 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_42495 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_42515 SM00052 Putative diguanylate phosphodiesterase RAM_42515 SM00091 PAS domain RAM_42515 SM00267 diguanylate cyclase RAM_42550 SM00448 cheY-homologous receiver domain RAM_42550 SM00862 Transcriptional regulatory protein, C terminal RAM_42555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_42555 SM00387 Histidine kinase-like ATPases RAM_42555 SM00388 His Kinase A (phosphoacceptor) domain RAM_42590 SM00823 Phosphopantetheine attachment site RAM_42590 SM01294 RAM_42590 RAM_42595 SM00823 Phosphopantetheine attachment site RAM_42600 SM00824 Thioesterase RAM_42615 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_42640 SM00382 ATPases associated with a variety of cellular activities RAM_42665 SM00487 DEAD-like helicases superfamily RAM_42665 SM00490 helicase superfamily c-terminal domain RAM_42680 SM00852 Probable molybdopterin binding domain RAM_42695 SM00834 Putative regulatory protein RAM_42700 SM00858 RAM_42700 RAM_42715 SM00852 Probable molybdopterin binding domain RAM_42735 SM00387 Histidine kinase-like ATPases RAM_42735 SM00388 His Kinase A (phosphoacceptor) domain RAM_42740 SM00448 cheY-homologous receiver domain RAM_42740 SM00862 Transcriptional regulatory protein, C terminal RAM_42775 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_42785 SM00420 helix_turn_helix, Deoxyribose operon repressor RAM_42785 SM01134 RAM_42785 RAM_42790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_42790 SM00387 Histidine kinase-like ATPases RAM_42790 SM00388 His Kinase A (phosphoacceptor) domain RAM_42795 SM00448 cheY-homologous receiver domain RAM_42795 SM00862 Transcriptional regulatory protein, C terminal RAM_42805 SM00421 helix_turn_helix, Lux Regulon RAM_42805 SM00448 cheY-homologous receiver domain RAM_42835 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_42850 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_42930 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_42980 SM00382 ATPases associated with a variety of cellular activities RAM_42995 SM00382 ATPases associated with a variety of cellular activities RAM_43015 SM00458 Ricin-type beta-trefoil RAM_43020 SM00458 Ricin-type beta-trefoil RAM_43025 SM00458 Ricin-type beta-trefoil RAM_43030 SM00458 Ricin-type beta-trefoil RAM_43035 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_43035 SM00895 RAM_43035 RAM_43055 SM00796 Allophanate hydrolase subunit 1 RAM_43060 SM00797 Allophanate hydrolase subunit 2 RAM_43075 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_43085 SM00829 Enoylreductase RAM_43100 SM00529 Helix-turn-helix diphteria tox regulatory element RAM_43100 SM00899 RAM_43100 RAM_43230 SM00530 Helix-turn-helix XRE-family like proteins RAM_43240 SM00382 ATPases associated with a variety of cellular activities RAM_43305 SM00944 Pro-kumamolisin, activation domain RAM_43315 SM00849 Metallo-beta-lactamase superfamily RAM_43320 SM00849 Metallo-beta-lactamase superfamily RAM_43400 SM00382 ATPases associated with a variety of cellular activities RAM_43410 SM00387 Histidine kinase-like ATPases RAM_43415 SM00421 helix_turn_helix, Lux Regulon RAM_43415 SM00448 cheY-homologous receiver domain RAM_43450 SM00382 ATPases associated with a variety of cellular activities RAM_43465 SM00448 cheY-homologous receiver domain RAM_43465 SM00862 Transcriptional regulatory protein, C terminal RAM_43470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_43470 SM00387 Histidine kinase-like ATPases RAM_43470 SM00388 His Kinase A (phosphoacceptor) domain RAM_43530 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_43575 SM00357 Cold shock protein domain RAM_43620 SM00382 ATPases associated with a variety of cellular activities RAM_43685 SM00382 ATPases associated with a variety of cellular activities RAM_43705 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_43710 SM00729 Elongator protein 3, MiaB family, Radical SAM RAM_43720 SM00257 Lysin motif RAM_43735 SM00852 Probable molybdopterin binding domain RAM_43745 SM00919 Malic enzyme, NAD binding domain RAM_43745 SM01274 RAM_43745 RAM_43770 SM00960 Roadblock/LC7 domain RAM_43785 SM00960 Roadblock/LC7 domain RAM_43790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_43790 SM00387 Histidine kinase-like ATPases RAM_43795 SM00062 Bacterial periplasmic substrate-binding proteins RAM_43810 SM00382 ATPases associated with a variety of cellular activities RAM_43830 SM00944 Pro-kumamolisin, activation domain RAM_43855 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_43855 SM00387 Histidine kinase-like ATPases RAM_43870 SM00487 DEAD-like helicases superfamily RAM_43870 SM00490 helicase superfamily c-terminal domain RAM_43890 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_43910 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_43915 SM00357 Cold shock protein domain RAM_43930 SM00852 Probable molybdopterin binding domain RAM_43940 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_43965 SM00382 ATPases associated with a variety of cellular activities RAM_43965 SM01072 Cell division protein 48 (CDC48) domain 2 RAM_43965 SM01073 Cell division protein 48 (CDC48) N-terminal domain RAM_43990 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. RAM_44015 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_44055 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_44055 SM00866 RAM_44055 RAM_44105 SM00862 Transcriptional regulatory protein, C terminal RAM_44105 SM01043 Bacterial transcriptional activator domain RAM_44135 SM00829 Enoylreductase RAM_44170 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_44210 SM01217 RAM_44210 RAM_44235 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_44245 SM00382 ATPases associated with a variety of cellular activities RAM_44270 SM00881 CoA binding domain RAM_44315 SM00448 cheY-homologous receiver domain RAM_44315 SM00862 Transcriptional regulatory protein, C terminal RAM_44320 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_44320 SM00387 Histidine kinase-like ATPases RAM_44320 SM00388 His Kinase A (phosphoacceptor) domain RAM_44335 SM00829 Enoylreductase RAM_44345 SM00346 helix_turn_helix isocitrate lyase regulation RAM_44355 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_44390 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_44390 SM00387 Histidine kinase-like ATPases RAM_44390 SM00388 His Kinase A (phosphoacceptor) domain RAM_44405 SM00028 Tetratricopeptide repeats RAM_44440 SM00812 Alpha-L-fucosidase RAM_44470 SM00422 helix_turn_helix, mercury resistance RAM_44505 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_44525 SM00382 ATPases associated with a variety of cellular activities RAM_44535 SM01058 CarD-like/TRCF domain RAM_44565 SM00840 RAM_44565 RAM_44570 SM00967 RNA 2'-O ribose methyltransferase substrate binding RAM_44585 SM00460 Transglutaminase/protease-like homologues RAM_44605 SM01007 Class II Aldolase and Adducin N-terminal domain RAM_44630 SM00382 ATPases associated with a variety of cellular activities RAM_44640 SM00354 helix_turn _helix lactose operon repressor RAM_44645 SM00947 Carbonic anhydrase RAM_44655 SM00478 endonuclease III RAM_44675 SM00382 ATPases associated with a variety of cellular activities RAM_44740 SM00382 ATPases associated with a variety of cellular activities RAM_44750 SM00862 Transcriptional regulatory protein, C terminal RAM_44750 SM01043 Bacterial transcriptional activator domain RAM_44775 SM00530 Helix-turn-helix XRE-family like proteins RAM_44790 SM00382 ATPases associated with a variety of cellular activities RAM_44790 SM01086 C-terminal, D2-small domain, of ClpB protein RAM_44805 SM00342 helix_turn_helix, arabinose operon control protein RAM_44860 SM00422 helix_turn_helix, mercury resistance RAM_44870 SM00905 Dihydroneopterin aldolase RAM_44885 SM00382 ATPases associated with a variety of cellular activities RAM_44945 SM00649 Ribosomal protein L11/L12 RAM_44955 SM00631 RAM_44955 RAM_44985 SM00507 HNH nucleases RAM_44990 SM00530 Helix-turn-helix XRE-family like proteins RAM_45035 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_45090 SM00382 ATPases associated with a variety of cellular activities RAM_45125 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain RAM_45125 SM00437 Bacterial DNA topoisomerase I DNA-binding domain RAM_45125 SM00493 RAM_45125 RAM_45150 SM00487 DEAD-like helicases superfamily RAM_45150 SM00490 helicase superfamily c-terminal domain RAM_45155 SM00943 Bifunctional DNA primase/polymerase, N-terminal RAM_45285 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_45305 SM00478 endonuclease III RAM_45305 SM00525 RAM_45305 RAM_45315 SM00100 Cyclic nucleotide-monophosphate binding domain RAM_45315 SM00419 helix_turn_helix, cAMP Regulatory protein RAM_45335 SM00480 DNA polymerase III beta subunit RAM_45375 SM00849 Metallo-beta-lactamase superfamily RAM_45430 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_45570 SM00859 Semialdehyde dehydrogenase, NAD binding domain RAM_45590 SM00917 LeuA allosteric (dimerisation) domain RAM_45650 SM00382 ATPases associated with a variety of cellular activities RAM_45655 SM00382 ATPases associated with a variety of cellular activities RAM_45710 SM00047 Lysozyme subfamily 2 RAM_45715 SM00493 RAM_45715 RAM_45725 SM00646 RAM_45725 RAM_45750 SM00382 ATPases associated with a variety of cellular activities RAM_45775 SM00960 Roadblock/LC7 domain RAM_45780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_45780 SM00387 Histidine kinase-like ATPases RAM_45785 SM00382 ATPases associated with a variety of cellular activities RAM_45805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain RAM_45805 SM00387 Histidine kinase-like ATPases RAM_45805 SM00388 His Kinase A (phosphoacceptor) domain RAM_45810 SM00448 cheY-homologous receiver domain RAM_45810 SM00862 Transcriptional regulatory protein, C terminal RAM_45825 SM00421 helix_turn_helix, Lux Regulon RAM_45825 SM00448 cheY-homologous receiver domain RAM_45850 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins RAM_45865 SM00220 Serine/Threonine protein kinases, catalytic domain RAM_45875 SM00331 Sigma factor PP2C-like phosphatases RAM_45875 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain RAM_45925 SM00854 Bacterial capsule synthesis protein PGA_cap RAM_46010 SM00422 helix_turn_helix, mercury resistance RAM_46025 SM00382 ATPases associated with a variety of cellular activities RAM_46035 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_46035 SM00895 RAM_46035 RAM_46040 SM01130 RAM_46040 RAM_46060 SM00344 helix_turn_helix ASNC type RAM_46115 SM00458 Ricin-type beta-trefoil RAM_46125 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_46125 SM00866 RAM_46125 RAM_46160 SM00267 diguanylate cyclase RAM_46180 SM00382 ATPases associated with a variety of cellular activities RAM_46205 SM00862 Transcriptional regulatory protein, C terminal RAM_46225 SM00450 Rhodanese Homology Domain RAM_46245 SM00796 Allophanate hydrolase subunit 1 RAM_46250 SM00797 Allophanate hydrolase subunit 2 RAM_46300 SM00382 ATPases associated with a variety of cellular activities RAM_46375 SM00641 Glycosyl hydrolases family 25 RAM_46380 SM00641 Glycosyl hydrolases family 25 RAM_46410 SM00382 ATPases associated with a variety of cellular activities RAM_46415 SM01211 RAM_46415 RAM_46440 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor RAM_46450 SM00849 Metallo-beta-lactamase superfamily RAM_46480 SM00382 ATPases associated with a variety of cellular activities RAM_46490 SM00062 Bacterial periplasmic substrate-binding proteins RAM_46490 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. RAM_46495 SM00062 Bacterial periplasmic substrate-binding proteins RAM_46500 SM00062 Bacterial periplasmic substrate-binding proteins RAM_46505 SM00998 Adenylosuccinate lyase C-terminus RAM_46510 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain RAM_46515 SM00822 RAM_46515 RAM_46525 SM00345 helix_turn_helix gluconate operon transcriptional repressor RAM_46525 SM00895 RAM_46525 RAM_46600 SM01209 RAM_46600 RAM_46600 SM01210 RAM_46600 RAM_46660 SM00788 Adenylosuccinate synthetase RAM_46695 SM00267 diguanylate cyclase RAM_46735 SM00822 RAM_46735 RAM_46815 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_46825 SM00867 YceI-like domain RAM_46860 SM00382 ATPases associated with a variety of cellular activities RAM_46875 SM00354 helix_turn _helix lactose operon repressor RAM_46890 SM00926 Molybdopterin oxidoreductase Fe4S4 domain RAM_46935 SM00382 ATPases associated with a variety of cellular activities RAM_46955 SM00382 ATPases associated with a variety of cellular activities RAM_46955 SM01086 C-terminal, D2-small domain, of ClpB protein RAM_46965 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_46985 SM00495 Chitin-binding domain type 3 RAM_46995 SM00422 helix_turn_helix, mercury resistance RAM_47000 SM00271 DnaJ molecular chaperone homology domain RAM_47070 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_47155 SM00986 Uracil DNA glycosylase superfamily RAM_47155 SM00987 UreE urease accessory protein, C-terminal domain RAM_47160 SM00421 helix_turn_helix, Lux Regulon RAM_47180 SM00530 Helix-turn-helix XRE-family like proteins RAM_47185 SM00364 Leucine-rich repeats, bacterial type RAM_47185 SM00369 Leucine-rich repeats, typical (most populated) subfamily RAM_47195 SM00883 Chaperonin 10 Kd subunit RAM_47220 SM00382 ATPases associated with a variety of cellular activities RAM_47230 SM00062 Bacterial periplasmic substrate-binding proteins RAM_47245 SM00460 Transglutaminase/protease-like homologues RAM_47270 SM00861 Transketolase, pyrimidine binding domain RAM_47285 SM00382 ATPases associated with a variety of cellular activities RAM_47320 SM00487 DEAD-like helicases superfamily RAM_47355 SM00822 RAM_47355 RAM_47370 SM00422 helix_turn_helix, mercury resistance RAM_47390 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_47420 SM00530 Helix-turn-helix XRE-family like proteins RAM_47440 SM00382 ATPases associated with a variety of cellular activities RAM_47490 SM00421 helix_turn_helix, Lux Regulon RAM_47490 SM00448 cheY-homologous receiver domain RAM_47505 SM00382 ATPases associated with a variety of cellular activities RAM_47515 SM00382 ATPases associated with a variety of cellular activities RAM_47540 SM00382 ATPases associated with a variety of cellular activities RAM_47550 SM00421 helix_turn_helix, Lux Regulon RAM_47550 SM00448 cheY-homologous receiver domain RAM_47570 SM00822 RAM_47570 RAM_47590 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_47650 SM00518 AP endonuclease family 2 RAM_47710 SM00382 ATPases associated with a variety of cellular activities RAM_47715 SM00347 helix_turn_helix multiple antibiotic resistance protein RAM_47750 SM00421 helix_turn_helix, Lux Regulon RAM_47750 SM00448 cheY-homologous receiver domain RAM_47835 SM00822 RAM_47835 RAM_47880 SM00954 Region found in RelA / SpoT proteins RAM_47920 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. RAM_47970 SM00646 RAM_47970 RAM_47990 SM00470 ParB-like nuclease domain RAM_48010 SM00393 Putative single-stranded nucleic acids-binding domain RAM_48020 SM01234 RAM_48020